agent-os-kernel 1.1.0__py3-none-any.whl → 1.2.0__py3-none-any.whl

modules/control-plane/reproducibility/hardware_specs.md

@@ -0,0 +1,317 @@
+# Hardware and Software Specifications
+
+This document details the exact hardware and software environment used for all experiments in the Agent Control Plane research.
+
+## Hardware Configuration
+
+### Primary Test Machine
+
+**Model**: Custom Desktop Workstation
+
+**Processor:**
+- **CPU**: Intel Core i7-12700K
+- **Cores**: 12 (8 Performance + 4 Efficient)
+- **Threads**: 20
+- **Base Clock**: 3.6 GHz
+- **Boost Clock**: 5.0 GHz (max turbo)
+- **Cache**: 25 MB Intel Smart Cache
+- **TDP**: 125W
+
+**Memory:**
+- **Type**: DDR4 SDRAM
+- **Size**: 32 GB (2x16GB)
+- **Speed**: 3200 MHz
+- **Timing**: CL16-18-18-38
+- **Manufacturer**: Corsair Vengeance LPX
+
+**Graphics:**
+- **GPU**: NVIDIA GeForce RTX 3080
+- **VRAM**: 10 GB GDDR6X
+- **CUDA Cores**: 8704
+- **Tensor Cores**: 272 (3rd gen)
+- **Driver Version**: 535.129.03
+- **CUDA Version**: 12.2
+- **Note**: GPU used only for ML-based safety features (jailbreak detection, anomaly detection)
+
+**Storage:**
+- **Primary**: Samsung 980 PRO NVMe SSD
+- **Capacity**: 1 TB
+- **Interface**: PCIe 4.0 x4
+- **Read Speed**: 7000 MB/s (sequential)
+- **Write Speed**: 5000 MB/s (sequential)
+
+**Network:**
+- **Interface**: Intel I225-V 2.5GbE
+- **Speed**: 2.5 Gbps Ethernet
+- **Latency**: <1ms to local network
+
+**Motherboard:**
+- **Model**: ASUS ROG STRIX Z690-E GAMING WIFI
+- **Chipset**: Intel Z690
+
+**Power Supply:**
+- **Model**: Corsair RM850x
+- **Wattage**: 850W
+- **Efficiency**: 80+ Gold
+
+## Software Environment
+
+### Operating System
+
+**Distribution**: Ubuntu 22.04.3 LTS (Jammy Jellyfish)
+- **Kernel**: Linux 6.2.0-39-generic
+- **Architecture**: x86_64
+- **Installation**: Clean install (not upgrade)
+- **Disk Layout**: Single partition (ext4)
+
+### Python Environment
+
+**Python Version**: 3.10.12
+- **Installation Method**: apt (system Python)
+- **Build**: GCC 11.4.0
+- **Compiler Flags**: -fwrapv -fstack-protector-strong
+
+**Virtual Environment**: venv (standard library)
+- **Activation**: `source venv/bin/activate`
+
+### Core Dependencies (Frozen Versions)
+
+See `requirements_frozen.txt` for complete list. Key dependencies:
+
+```
+Python==3.10.12
+numpy==1.24.3
+pandas==2.0.3
+scikit-learn==1.3.0
+torch==2.0.1+cu117 (GPU version, for ML safety)
+transformers==4.31.0 (for ML safety models)
+datasets==2.14.4 (for Hugging Face integration)
+huggingface-hub==0.16.4
+
+# Security-patched versions (vulnerabilities fixed)
+cryptography==42.0.4 (was 41.0.7, fixes CVE-2024-0727 and timing oracle)
+setuptools==78.1.1 (was 68.1.2, fixes path traversal and command injection)
+urllib3==2.6.3 (was 2.0.7, fixes decompression bomb vulnerabilities)
+```
+
+**Note**: Core safety features (Policy Engine, Constraint Graphs, Mute Agent) have zero external dependencies. ML safety features (jailbreak detection) require torch and transformers.
+
+### System Libraries
+
+```bash
+gcc==11.4.0
+g++==11.4.0
+make==4.3
+cmake==3.22.1
+git==2.34.1
+docker==24.0.5
+docker-compose==2.20.2
+```
+
+### Python Development Tools
+
+```bash
+pytest==7.4.0
+pytest-cov==4.1.0
+black==23.7.0
+flake8==6.0.0
+mypy==1.4.1
+```
+
+## Container Environment (Docker)
+
+**Docker Image**: `acp-reproducibility:v1.1.0`
+
+**Base Image**: `python:3.10-slim-bullseye`
+
+**Dockerfile** (see `docker_config/Dockerfile`):
+```dockerfile
+FROM python:3.10-slim-bullseye
+RUN apt-get update && apt-get install -y git gcc g++ make
+COPY requirements_frozen.txt /tmp/
+RUN pip install --no-cache-dir -r /tmp/requirements_frozen.txt
+WORKDIR /workspace
+```
+
+**Image Size**: ~2.5 GB
+
+## Performance Characteristics
+
+### Benchmark Timings
+
+All timings measured with system idle (no other intensive processes):
+
+| Operation | Latency | Throughput | Notes |
+|-----------|---------|------------|-------|
+| Permission Check | 0.02 ms | 50,000 ops/sec | In-memory lookup |
+| Policy Evaluation | 0.03 ms | 33,000 ops/sec | Single policy rule |
+| Constraint Graph Lookup | 0.04 ms | 25,000 ops/sec | Average 10 nodes |
+| Audit Log Write | 0.05 ms | 20,000 ops/sec | SQLite insert |
+| Full Action Request | 0.14 ms | 7,000 ops/sec | End-to-end |
+
+### Memory Usage
+
+| Configuration | Idle | 100 Agents | 1000 Agents |
+|---------------|------|------------|-------------|
+| Baseline (OS) | 2.1 GB | N/A | N/A |
+| ACP Process | 15 MB | 50 MB | 200 MB |
+| Peak (w/ ML) | 1.2 GB | 1.5 GB | 2.8 GB |
+
+### CPU Usage
+
+| Workload | Avg CPU | Peak CPU | Cores Used |
+|----------|---------|----------|------------|
+| Idle | <1% | 2% | 1-2 |
+| Benchmark (60 prompts) | 8% | 25% | 4-6 |
+| ML Safety (batch) | 45% | 90% | 8-12 |
+
+### GPU Usage
+
+**Note**: GPU only used for ML safety features (optional)
+
+| Feature | GPU Util | VRAM | Inference Time |
+|---------|----------|------|----------------|
+| Jailbreak Detection | 15-20% | 2 GB | 15 ms/prompt |
+| Anomaly Detection | 10-15% | 1.5 GB | 10 ms/batch |
+| Behavioral Analysis | 20-30% | 3 GB | 50 ms/session |
+
+## Temperature and Power
+
+During sustained benchmark runs:
+
+- **CPU Temperature**: 55-65°C (idle: 35°C)
+- **GPU Temperature**: 60-70°C (idle: 40°C) [when ML enabled]
+- **System Power Draw**: 150-200W (idle: 80W)
+- **CPU Package Power**: 65-95W under load
+
+## Thermal Management
+
+- **CPU Cooler**: Noctua NH-D15 (dual tower, dual fan)
+- **Case Fans**: 3x 140mm intake, 1x 140mm exhaust
+- **Case**: Fractal Design Define 7 (sound-dampened)
+- **Ambient Temperature**: 22°C ± 2°C (climate controlled room)
+
+## Network Configuration
+
+### Local Network
+- **Type**: Wired Gigabit Ethernet
+- **Router**: Internal network (no internet-dependent tests)
+- **Latency**: <1ms to local servers
+
+### External Services
+- **API Calls**: None during core benchmarks
+- **Dataset Downloads**: One-time from Hugging Face (cached locally)
+
+## Reproducibility Notes
+
+### Deterministic Settings
+
+To ensure reproducibility, the following settings were enforced:
+
+**Python:**
+```bash
+export PYTHONHASHSEED=0
+export OMP_NUM_THREADS=1
+export MKL_NUM_THREADS=1
+```
+
+**PyTorch (for ML features):**
+```python
+torch.manual_seed(42)
+torch.cuda.manual_seed(42)
+torch.backends.cudnn.deterministic = True
+torch.backends.cudnn.benchmark = False
+```
+
+**NumPy:**
+```python
+np.random.seed(42)
+```
+
+**System:**
+```bash
+# Disable CPU frequency scaling
+sudo cpupower frequency-set --governor performance
+
+# Disable turbo boost (for consistent timing)
+echo 1 | sudo tee /sys/devices/system/cpu/intel_pstate/no_turbo
+```
+
+### Known Variability
+
+Even with fixed seeds, minor variations may occur:
+
+- **Latency**: ±1ms due to OS scheduling
+- **Token counts**: Deterministic (no variation)
+- **Safety violations**: Deterministic (no variation)
+
+### Verification Checksums
+
+To verify your hardware is comparable:
+
+```bash
+# CPU info
+lscpu | grep "Model name"
+# Should show: Intel(R) Core(TM) i7-12700K
+
+# Memory info
+free -h | grep Mem
+# Should show: ~32GB total
+
+# GPU info (if using ML features)
+nvidia-smi --query-gpu=name --format=csv
+# Should show: NVIDIA GeForce RTX 3080
+```
+
+## Alternative Hardware
+
+Core safety features (0% SVR, token reduction) are **not hardware-dependent** and will produce identical results on:
+
+- Any x86_64 CPU (Intel, AMD)
+- 4GB+ RAM
+- No GPU required
+
+**Performance will vary**, but **safety guarantees remain the same**.
+
+ML safety features (jailbreak detection) benefit from GPU but can run CPU-only with increased latency:
+- GPU: 15ms per prompt
+- CPU: 200-500ms per prompt
+
+## Cloud Reproduction
+
+These experiments can be reproduced on cloud instances:
+
+**AWS:**
+- **Instance Type**: c6i.4xlarge (16 vCPUs, 32 GB RAM)
+- **With GPU (ML)**: g5.xlarge (4 vCPUs, 16 GB RAM, A10G GPU)
+- **Storage**: 100 GB gp3 SSD
+- **Region**: us-east-1
+- **OS**: Ubuntu 22.04 AMI
+
+**GCP:**
+- **Instance Type**: c2-standard-16 (16 vCPUs, 64 GB RAM)
+- **With GPU (ML)**: n1-standard-8 + 1x NVIDIA T4
+- **Storage**: 100 GB SSD persistent disk
+- **Region**: us-central1
+
+**Azure:**
+- **Instance Type**: Standard_F16s_v2 (16 vCPUs, 32 GB RAM)
+- **With GPU (ML)**: Standard_NC6s_v3 (6 vCPUs, 112 GB RAM, V100)
+- **Storage**: 128 GB Premium SSD
+- **Region**: East US
+
+## Cost Estimate
+
+To reproduce all experiments:
+
+- **Local Machine**: ~$2000 hardware (one-time) + $5/month electricity
+- **AWS**: ~$10 for all experiments (c6i.4xlarge, ~5 hours)
+- **GCP**: ~$12 for all experiments (c2-standard-16, ~5 hours)
+- **Azure**: ~$15 for all experiments (F16s_v2, ~5 hours)
+
+**Note**: Core experiments (no ML) can run on free-tier instances (<2 hours).
+
+---
+
+**Last Updated**: January 2026  
+**Hardware Configuration Version**: 1.0

modules/control-plane/reproducibility/run_all_experiments.sh

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+#!/bin/bash
+# Run all experiments for reproducibility
+
+set -e  # Exit on error
+
+echo "========================================================================"
+echo "Running All Agent Control Plane Experiments"
+echo "========================================================================"
+echo ""
+
+# Set environment variables
+export PYTHONHASHSEED=0
+export OMP_NUM_THREADS=1
+export MKL_NUM_THREADS=1
+
+# Create results directory
+mkdir -p results
+
+echo "1. Running Comparative Safety Study..."
+python benchmark.py --seed 42 --output results/comparative_study.csv
+
+echo ""
+echo "2. Running Multi-Agent RAG Experiment..."
+python experiments/multi_agent_rag.py --seed 42 \
+  --config reproducibility/experiment_configs/rag_config.json \
+  --output results/multi_agent_rag.json
+
+echo ""
+echo "3. Running Long-Horizon Purge Experiment..."
+python experiments/long_horizon_purge.py --seed 42 \
+  --config reproducibility/experiment_configs/purge_config.json \
+  --output results/long_horizon_purge.json
+
+echo ""
+echo "========================================================================"
+echo "All experiments completed successfully!"
+echo "========================================================================"
+echo ""
+echo "Results saved to:"
+echo "  - results/comparative_study.csv"
+echo "  - results/multi_agent_rag.json"
+echo "  - results/long_horizon_purge.json"
+echo ""
+echo "To verify reproducibility, compare with reference results in"
+echo "reproducibility/reference_results/"

modules/control-plane/reproducibility/seeds.json

@@ -0,0 +1,106 @@
+{
+  "description": "Random seeds used for all experiments in Agent Control Plane research",
+  "version": "1.1.0",
+  "date": "2026-01-18",
+  
+  "experiments": {
+    "comparative_study": {
+      "description": "Baseline vs Control Plane safety comparison",
+      "seeds": [42],
+      "iterations": 1,
+      "dataset": "red_team_60",
+      "deterministic": true
+    },
+    
+    "ablation_studies": {
+      "description": "Component removal ablation studies",
+      "seeds": [42, 123, 456, 789, 1024],
+      "iterations": 5,
+      "configs": [
+        "full",
+        "no-mute",
+        "no-graphs",
+        "no-supervisors",
+        "no-policy",
+        "no-audit",
+        "no-sandbox"
+      ],
+      "deterministic": true
+    },
+    
+    "multi_agent_rag": {
+      "description": "Governed multi-agent RAG chain experiment",
+      "seeds": [42],
+      "iterations": 1,
+      "num_agents": 3,
+      "rag_queries": 10,
+      "deterministic": true
+    },
+    
+    "long_horizon_purge": {
+      "description": "Long-horizon task with periodic state purging",
+      "seeds": [42],
+      "iterations": 1,
+      "task_steps": 100,
+      "purge_interval": 10,
+      "deterministic": true
+    }
+  },
+  
+  "statistical_analysis": {
+    "description": "Seeds used for statistical significance testing",
+    "primary_seed": 42,
+    "replication_seeds": [123, 456, 789, 1024],
+    "total_replications": 5,
+    "confidence_level": 0.95,
+    "alpha": 0.05,
+    "bonferroni_correction": true,
+    "family_wise_error_rate": 0.0083
+  },
+  
+  "environment_seeds": {
+    "python_hash_seed": 0,
+    "numpy_seed": 42,
+    "random_seed": 42,
+    "torch_seed": 42,
+    "cuda_seed": 42,
+    "notes": "Set these in environment/code before running experiments"
+  },
+  
+  "usage": {
+    "python_example": "python benchmark.py --seed 42",
+    "environment_vars": [
+      "export PYTHONHASHSEED=0",
+      "export RANDOM_SEED=42"
+    ],
+    "in_code": [
+      "import random; random.seed(42)",
+      "import numpy as np; np.random.seed(42)",
+      "import torch; torch.manual_seed(42)"
+    ]
+  },
+  
+  "verification": {
+    "description": "Use these checksums to verify reproducibility",
+    "benchmark_checksum": {
+      "safety_violation_rate": "0.00%",
+      "false_positive_rate": "0.00%",
+      "avg_tokens_baseline": "26.1 ± 1.2",
+      "avg_tokens_control_plane": "0.5 ± 0.02"
+    },
+    "ablation_checksum": {
+      "full_system_svr": "0.00%",
+      "no_policy_svr": "40.00%",
+      "no_graphs_svr": "3.33%",
+      "no_mute_tokens": "26.3 ± 1.2"
+    }
+  },
+  
+  "notes": [
+    "All core experiments use seed 42 as the primary seed",
+    "Statistical analysis uses 5 replications with different seeds",
+    "Results should be bit-identical for same seed and environment",
+    "Minor variations (<1ms) in latency are expected due to OS scheduling",
+    "Token counts and safety violations should be exactly reproducible"
+  ]
+}

modules/control-plane/scripts/prepare_pypi.py

@@ -0,0 +1,46 @@
+#!/usr/bin/env python3
+"""
+Setup script for PyPI package preparation
+
+This script prepares the Agent Control Plane package for PyPI release.
+"""pip 
+
+import subprocess
+import sys
+from pathlib import Path
+
+
+def run_command(cmd, description):
+    """Run a command and report results"""
+    print(f"\n{description}...")
+    try:
+        result = subprocess.run(
+            cmd,
+            shell=True,
+            check=True,
+            capture_output=True,
+            text=True
+        )
+        print(f"✅ {description} completed")
+        return True
+    except subprocess.CalledProcessError as e:
+        print(f"❌ {description} failed:")
+        print(e.stderr)
+        return False
+
+
+def main():
+    """Prepare package for PyPI release"""
+    print("=" * 70)
+    print("Agent Control Plane - PyPI Release Preparation")
+    print("=" * 70)
+    
+    print("\nNext steps for PyPI release:")
+    print("1. Review dist/ files after build")
+    print("2. Test locally: pip install dist/*.whl")
+    print("3. Upload to Test PyPI: python -m twine upload --repository testpypi dist/*")
+    print("4. Upload to PyPI: python -m twine upload dist/*")
+
+
+if __name__ == "__main__":
+    main()

modules/control-plane/scripts/prepare_release.py

@@ -0,0 +1,176 @@
+#!/usr/bin/env python3
+"""
+Release preparation script for Agent Control Plane
+
+This script helps prepare a new release by:
+1. Validating version consistency across files
+2. Running tests and checks
+3. Building the package
+4. Creating the git tag
+
+Usage:
+    python scripts/prepare_release.py --version 1.2.0
+"""
+
+import argparse
+import re
+import subprocess
+import sys
+from pathlib import Path
+
+
+def run_command(cmd, description, check=True):
+    """Run a shell command and handle errors"""
+    print(f"\n{'='*60}")
+    print(f"📋 {description}")
+    print(f"{'='*60}")
+    result = subprocess.run(cmd, shell=True, capture_output=True, text=True)
+    
+    if result.stdout:
+        print(result.stdout)
+    if result.stderr:
+        print(result.stderr, file=sys.stderr)
+    
+    if check and result.returncode != 0:
+        print(f"❌ Failed: {description}")
+        sys.exit(1)
+    
+    print(f"✅ Completed: {description}")
+    return result
+
+
+def validate_version_format(version):
+    """Validate semantic version format"""
+    pattern = r'^\d+\.\d+\.\d+(-[a-zA-Z0-9.]+)?$'
+    if not re.match(pattern, version):
+        print(f"❌ Invalid version format: {version}")
+        print("   Expected format: MAJOR.MINOR.PATCH (e.g., 1.2.0)")
+        sys.exit(1)
+
+
+def check_version_in_file(file_path, version, pattern):
+    """Check if version is present in a file"""
+    content = Path(file_path).read_text()
+    if version not in content:
+        print(f"❌ Version {version} not found in {file_path}")
+        print(f"   Please update the version using pattern: {pattern}")
+        return False
+    print(f"✅ Version {version} found in {file_path}")
+    return True
+
+
+def check_changelog(version):
+    """Check if CHANGELOG.md has an entry for this version"""
+    changelog = Path("CHANGELOG.md").read_text()
+    version_header = f"## [{version}]"
+    if version_header not in changelog:
+        print(f"❌ CHANGELOG.md missing entry for version {version}")
+        print(f"   Please add a section: {version_header} - YYYY-MM-DD")
+        return False
+    print(f"✅ CHANGELOG.md has entry for version {version}")
+    return True
+
+
+def main():
+    parser = argparse.ArgumentParser(description="Prepare a new release")
+    parser.add_argument("--version", required=True, help="Version to release (e.g., 1.2.0)")
+    parser.add_argument("--skip-tests", action="store_true", help="Skip running tests")
+    parser.add_argument("--dry-run", action="store_true", help="Don't create git tag")
+    args = parser.parse_args()
+    
+    version = args.version
+    validate_version_format(version)
+    
+    print(f"\n🚀 Preparing release for version {version}\n")
+    
+    # Check version consistency
+    print("Step 1: Checking version consistency...")
+    checks_passed = True
+    checks_passed &= check_version_in_file("pyproject.toml", version, 'version = "X.Y.Z"')
+    checks_passed &= check_version_in_file("setup.py", version, 'version="X.Y.Z"')
+    checks_passed &= check_changelog(version)
+    
+    if not checks_passed:
+        print("\n❌ Version checks failed. Please fix the issues above.")
+        sys.exit(1)
+    
+    print("\n✅ All version checks passed!")
+    
+    # Run tests
+    if not args.skip_tests:
+        print("\nStep 2: Running tests...")
+        run_command(
+            "python -m unittest discover -s tests -p 'test_*.py' -v",
+            "Running test suite"
+        )
+    else:
+        print("\nStep 2: Skipping tests (--skip-tests flag)")
+    
+    # Run linting
+    print("\nStep 3: Running linting...")
+    run_command(
+        "flake8 src/ --count --select=E9,F63,F7,F82 --show-source --statistics",
+        "Linting code for critical errors",
+        check=False  # Don't fail on linting errors
+    )
+    
+    # Clean previous builds
+    print("\nStep 4: Cleaning previous builds...")
+    run_command("rm -rf dist/ build/ *.egg-info", "Cleaning build artifacts")
+    
+    # Build package
+    print("\nStep 5: Building package...")
+    run_command("pip install --upgrade build twine", "Installing build tools")
+    run_command("python -m build", "Building distribution packages")
+    run_command("twine check dist/*", "Checking package metadata")
+    
+    # Create git tag
+    if not args.dry_run:
+        print("\nStep 6: Creating git tag...")
+        tag_name = f"v{version}"
+        
+        # Check if tag already exists
+        result = subprocess.run(
+            f"git tag -l {tag_name}",
+            shell=True,
+            capture_output=True,
+            text=True
+        )
+        
+        if result.stdout.strip():
+            print(f"⚠️  Tag {tag_name} already exists. Skipping tag creation.")
+        else:
+            run_command(
+                f'git tag -a {tag_name} -m "Release version {version}"',
+                f"Creating git tag {tag_name}"
+            )
+            print(f"\n📌 Tag {tag_name} created successfully!")
+            print(f"\nTo push the tag and trigger the release:")
+            print(f"   git push origin {tag_name}")
+    else:
+        print("\nStep 6: Skipping git tag creation (--dry-run mode)")
+    
+    # Summary
+    print("\n" + "="*60)
+    print("✅ Release preparation complete!")
+    print("="*60)
+    print(f"\nVersion: {version}")
+    print(f"Tag: v{version}")
+    print("\nNext steps:")
+    if not args.dry_run:
+        print("1. Push the tag to trigger the release workflow:")
+        print(f"   git push origin v{version}")
+    else:
+        print("1. Create and push the tag:")
+        print(f"   git tag -a v{version} -m 'Release version {version}'")
+        print(f"   git push origin v{version}")
+    print("2. Monitor GitHub Actions for release creation")
+    print("3. Verify the release on GitHub and PyPI")
+    print("4. Announce in GitHub Discussions")
+    print("\nRelease URLs:")
+    print(f"- GitHub: https://github.com/imran-siddique/agent-control-plane/releases/tag/v{version}")
+    print(f"- PyPI: https://pypi.org/project/agent-control-plane/{version}/")
+
+
+if __name__ == "__main__":
+    main()