research-copilot 0.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (395) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +190 -0
  3. package/app/build/icon.icns +0 -0
  4. package/app/build/icon.ico +0 -0
  5. package/app/build/icon.png +0 -0
  6. package/app/out/main/index.mjs +6719 -0
  7. package/app/out/preload/index.js +141 -0
  8. package/app/out/renderer/assets/Inter-Variable-Latin-8kRkwJBP.woff2 +0 -0
  9. package/app/out/renderer/assets/Inter-Variable-LatinExt-B_-bZUTo.woff2 +0 -0
  10. package/app/out/renderer/assets/KaTeX_AMS-Regular-BQhdFMY1.woff2 +0 -0
  11. package/app/out/renderer/assets/KaTeX_AMS-Regular-DMm9YOAa.woff +0 -0
  12. package/app/out/renderer/assets/KaTeX_AMS-Regular-DRggAlZN.ttf +0 -0
  13. package/app/out/renderer/assets/KaTeX_Caligraphic-Bold-ATXxdsX0.ttf +0 -0
  14. package/app/out/renderer/assets/KaTeX_Caligraphic-Bold-BEiXGLvX.woff +0 -0
  15. package/app/out/renderer/assets/KaTeX_Caligraphic-Bold-Dq_IR9rO.woff2 +0 -0
  16. package/app/out/renderer/assets/KaTeX_Caligraphic-Regular-CTRA-rTL.woff +0 -0
  17. package/app/out/renderer/assets/KaTeX_Caligraphic-Regular-Di6jR-x-.woff2 +0 -0
  18. package/app/out/renderer/assets/KaTeX_Caligraphic-Regular-wX97UBjC.ttf +0 -0
  19. package/app/out/renderer/assets/KaTeX_Fraktur-Bold-BdnERNNW.ttf +0 -0
  20. package/app/out/renderer/assets/KaTeX_Fraktur-Bold-BsDP51OF.woff +0 -0
  21. package/app/out/renderer/assets/KaTeX_Fraktur-Bold-CL6g_b3V.woff2 +0 -0
  22. package/app/out/renderer/assets/KaTeX_Fraktur-Regular-CB_wures.ttf +0 -0
  23. package/app/out/renderer/assets/KaTeX_Fraktur-Regular-CTYiF6lA.woff2 +0 -0
  24. package/app/out/renderer/assets/KaTeX_Fraktur-Regular-Dxdc4cR9.woff +0 -0
  25. package/app/out/renderer/assets/KaTeX_Main-Bold-Cx986IdX.woff2 +0 -0
  26. package/app/out/renderer/assets/KaTeX_Main-Bold-Jm3AIy58.woff +0 -0
  27. package/app/out/renderer/assets/KaTeX_Main-Bold-waoOVXN0.ttf +0 -0
  28. package/app/out/renderer/assets/KaTeX_Main-BoldItalic-DxDJ3AOS.woff2 +0 -0
  29. package/app/out/renderer/assets/KaTeX_Main-BoldItalic-DzxPMmG6.ttf +0 -0
  30. package/app/out/renderer/assets/KaTeX_Main-BoldItalic-SpSLRI95.woff +0 -0
  31. package/app/out/renderer/assets/KaTeX_Main-Italic-3WenGoN9.ttf +0 -0
  32. package/app/out/renderer/assets/KaTeX_Main-Italic-BMLOBm91.woff +0 -0
  33. package/app/out/renderer/assets/KaTeX_Main-Italic-NWA7e6Wa.woff2 +0 -0
  34. package/app/out/renderer/assets/KaTeX_Main-Regular-B22Nviop.woff2 +0 -0
  35. package/app/out/renderer/assets/KaTeX_Main-Regular-Dr94JaBh.woff +0 -0
  36. package/app/out/renderer/assets/KaTeX_Main-Regular-ypZvNtVU.ttf +0 -0
  37. package/app/out/renderer/assets/KaTeX_Math-BoldItalic-B3XSjfu4.ttf +0 -0
  38. package/app/out/renderer/assets/KaTeX_Math-BoldItalic-CZnvNsCZ.woff2 +0 -0
  39. package/app/out/renderer/assets/KaTeX_Math-BoldItalic-iY-2wyZ7.woff +0 -0
  40. package/app/out/renderer/assets/KaTeX_Math-Italic-DA0__PXp.woff +0 -0
  41. package/app/out/renderer/assets/KaTeX_Math-Italic-flOr_0UB.ttf +0 -0
  42. package/app/out/renderer/assets/KaTeX_Math-Italic-t53AETM-.woff2 +0 -0
  43. package/app/out/renderer/assets/KaTeX_SansSerif-Bold-CFMepnvq.ttf +0 -0
  44. package/app/out/renderer/assets/KaTeX_SansSerif-Bold-D1sUS0GD.woff2 +0 -0
  45. package/app/out/renderer/assets/KaTeX_SansSerif-Bold-DbIhKOiC.woff +0 -0
  46. package/app/out/renderer/assets/KaTeX_SansSerif-Italic-C3H0VqGB.woff2 +0 -0
  47. package/app/out/renderer/assets/KaTeX_SansSerif-Italic-DN2j7dab.woff +0 -0
  48. package/app/out/renderer/assets/KaTeX_SansSerif-Italic-YYjJ1zSn.ttf +0 -0
  49. package/app/out/renderer/assets/KaTeX_SansSerif-Regular-BNo7hRIc.ttf +0 -0
  50. package/app/out/renderer/assets/KaTeX_SansSerif-Regular-CS6fqUqJ.woff +0 -0
  51. package/app/out/renderer/assets/KaTeX_SansSerif-Regular-DDBCnlJ7.woff2 +0 -0
  52. package/app/out/renderer/assets/KaTeX_Script-Regular-C5JkGWo-.ttf +0 -0
  53. package/app/out/renderer/assets/KaTeX_Script-Regular-D3wIWfF6.woff2 +0 -0
  54. package/app/out/renderer/assets/KaTeX_Script-Regular-D5yQViql.woff +0 -0
  55. package/app/out/renderer/assets/KaTeX_Size1-Regular-C195tn64.woff +0 -0
  56. package/app/out/renderer/assets/KaTeX_Size1-Regular-Dbsnue_I.ttf +0 -0
  57. package/app/out/renderer/assets/KaTeX_Size1-Regular-mCD8mA8B.woff2 +0 -0
  58. package/app/out/renderer/assets/KaTeX_Size2-Regular-B7gKUWhC.ttf +0 -0
  59. package/app/out/renderer/assets/KaTeX_Size2-Regular-Dy4dx90m.woff2 +0 -0
  60. package/app/out/renderer/assets/KaTeX_Size2-Regular-oD1tc_U0.woff +0 -0
  61. package/app/out/renderer/assets/KaTeX_Size3-Regular-CTq5MqoE.woff +0 -0
  62. package/app/out/renderer/assets/KaTeX_Size3-Regular-DgpXs0kz.ttf +0 -0
  63. package/app/out/renderer/assets/KaTeX_Size4-Regular-BF-4gkZK.woff +0 -0
  64. package/app/out/renderer/assets/KaTeX_Size4-Regular-DWFBv043.ttf +0 -0
  65. package/app/out/renderer/assets/KaTeX_Size4-Regular-Dl5lxZxV.woff2 +0 -0
  66. package/app/out/renderer/assets/KaTeX_Typewriter-Regular-C0xS9mPB.woff +0 -0
  67. package/app/out/renderer/assets/KaTeX_Typewriter-Regular-CO6r4hn1.woff2 +0 -0
  68. package/app/out/renderer/assets/KaTeX_Typewriter-Regular-D3Ib7_Hf.ttf +0 -0
  69. package/app/out/renderer/assets/MilkdownMarkdownEditor-bLPxrCVb.js +89821 -0
  70. package/app/out/renderer/assets/MilkdownMarkdownEditor-tTNRIB2K.css +2555 -0
  71. package/app/out/renderer/assets/Tableau10-BqnYsPR6.js +9 -0
  72. package/app/out/renderer/assets/apl-fqmucPXA.js +140 -0
  73. package/app/out/renderer/assets/arc-J47ePHZ2.js +132 -0
  74. package/app/out/renderer/assets/array-DgktLKBx.js +6 -0
  75. package/app/out/renderer/assets/asciiarmor-DucZyvP0.js +56 -0
  76. package/app/out/renderer/assets/asn1-BnOEsgAm.js +144 -0
  77. package/app/out/renderer/assets/asterisk-QAlztEwS.js +345 -0
  78. package/app/out/renderer/assets/blockDiagram-c4efeb88-5uRQXgQJ.js +1817 -0
  79. package/app/out/renderer/assets/brainfuck-DZVCuF_t.js +53 -0
  80. package/app/out/renderer/assets/c4Diagram-c83219d4-C4iCTPEL.js +2464 -0
  81. package/app/out/renderer/assets/channel-ZAmhHE3g.js +7 -0
  82. package/app/out/renderer/assets/classDiagram-beda092f-7NOZxq_W.js +357 -0
  83. package/app/out/renderer/assets/classDiagram-v2-2358418a-5fPT-cUH.js +291 -0
  84. package/app/out/renderer/assets/clike-xqXYL6ge.js +805 -0
  85. package/app/out/renderer/assets/clojure-BhXMqnxz.js +849 -0
  86. package/app/out/renderer/assets/clone-CsnzsYXQ.js +8 -0
  87. package/app/out/renderer/assets/cmake-BGaNd9E7.js +71 -0
  88. package/app/out/renderer/assets/cobol-4yqQntpt.js +120 -0
  89. package/app/out/renderer/assets/coffeescript-D2dXvhEc.js +308 -0
  90. package/app/out/renderer/assets/commonlisp-CF_VNHQR.js +130 -0
  91. package/app/out/renderer/assets/createText-1719965b-Cji7KN4K.js +4904 -0
  92. package/app/out/renderer/assets/crystal-DyuLTqLs.js +398 -0
  93. package/app/out/renderer/assets/css-c-jst79C.js +1783 -0
  94. package/app/out/renderer/assets/cypher-Dlu_3r4V.js +121 -0
  95. package/app/out/renderer/assets/d-UURgV0Ux.js +179 -0
  96. package/app/out/renderer/assets/diff-B_Bi2Crb.js +25 -0
  97. package/app/out/renderer/assets/dockerfile-Bvk733Ga.js +201 -0
  98. package/app/out/renderer/assets/dtd-Dy74G54E.js +114 -0
  99. package/app/out/renderer/assets/dylan-TSb-Nfix.js +314 -0
  100. package/app/out/renderer/assets/ebnf-DAomQUbD.js +139 -0
  101. package/app/out/renderer/assets/ecl-B59qGGVg.js +178 -0
  102. package/app/out/renderer/assets/edges-96097737-CD0EvAZQ.js +1844 -0
  103. package/app/out/renderer/assets/eiffel-Dze7nlu3.js +134 -0
  104. package/app/out/renderer/assets/elm-DG7jkhNZ.js +176 -0
  105. package/app/out/renderer/assets/erDiagram-0228fc6a-DRYXBpi7.js +1321 -0
  106. package/app/out/renderer/assets/erlang-BO6gOnGA.js +674 -0
  107. package/app/out/renderer/assets/factor-CMxFHDqz.js +65 -0
  108. package/app/out/renderer/assets/fcl-CDDUNjTj.js +141 -0
  109. package/app/out/renderer/assets/flowDb-c6c81e3f-CuoIN-Cy.js +1713 -0
  110. package/app/out/renderer/assets/flowDiagram-50d868cf-CPWPLOml.js +1272 -0
  111. package/app/out/renderer/assets/flowDiagram-v2-4f6560a1-C_R12s4S.js +33 -0
  112. package/app/out/renderer/assets/flowchart-elk-definition-6af322e1-BdKUSFpi.js +92921 -0
  113. package/app/out/renderer/assets/forth-B9D2JCeE.js +116 -0
  114. package/app/out/renderer/assets/fortran-CAG2BFbe.js +467 -0
  115. package/app/out/renderer/assets/ganttDiagram-a2739b55-ygqT5HlG.js +3399 -0
  116. package/app/out/renderer/assets/gas-d3KEcW3x.js +294 -0
  117. package/app/out/renderer/assets/gherkin-DhZlEZiy.js +115 -0
  118. package/app/out/renderer/assets/gitGraphDiagram-82fe8481-D97GT4iA.js +1791 -0
  119. package/app/out/renderer/assets/graph-DpC13d95.js +1237 -0
  120. package/app/out/renderer/assets/groovy-CpwJiBl7.js +223 -0
  121. package/app/out/renderer/assets/haskell-BlGBCCe3.js +459 -0
  122. package/app/out/renderer/assets/haxe-7MlzfeYV.js +514 -0
  123. package/app/out/renderer/assets/http-BqypyemW.js +79 -0
  124. package/app/out/renderer/assets/idl-4HIGJlDI.js +985 -0
  125. package/app/out/renderer/assets/index-4-ziknCv.js +292 -0
  126. package/app/out/renderer/assets/index-5325376f-Bbs7Fbqr.js +663 -0
  127. package/app/out/renderer/assets/index-B2jip-rk.js +2489 -0
  128. package/app/out/renderer/assets/index-BKTVfokE.js +312 -0
  129. package/app/out/renderer/assets/index-BiJbFgVG.js +118 -0
  130. package/app/out/renderer/assets/index-Bn433Fat.js +83 -0
  131. package/app/out/renderer/assets/index-BqDyyRCx.js +39679 -0
  132. package/app/out/renderer/assets/index-BzFMeMPn.js +158 -0
  133. package/app/out/renderer/assets/index-C-_uCjZJ.css +2701 -0
  134. package/app/out/renderer/assets/index-C1ithNW1.js +1765 -0
  135. package/app/out/renderer/assets/index-CAJkRYkO.js +407 -0
  136. package/app/out/renderer/assets/index-CleO0-yj.js +690 -0
  137. package/app/out/renderer/assets/index-Cq4MH3sY.js +1020 -0
  138. package/app/out/renderer/assets/index-CtA0Xj22.js +705 -0
  139. package/app/out/renderer/assets/index-CvAZkqBZ.js +83 -0
  140. package/app/out/renderer/assets/index-D3UDN-5c.js +152 -0
  141. package/app/out/renderer/assets/index-D4F9R5ao.js +179 -0
  142. package/app/out/renderer/assets/index-D6RguhZ5.js +328 -0
  143. package/app/out/renderer/assets/index-DnEowqXv.js +386 -0
  144. package/app/out/renderer/assets/index-K8c8Mqdy.js +98 -0
  145. package/app/out/renderer/assets/index-Kh14gO6K.js +62 -0
  146. package/app/out/renderer/assets/index-WFd2jRnA.js +333 -0
  147. package/app/out/renderer/assets/index-WgMfkRFp.js +313 -0
  148. package/app/out/renderer/assets/index-Y4lKyF6t.js +1042 -0
  149. package/app/out/renderer/assets/index-fx307_f1.js +643 -0
  150. package/app/out/renderer/assets/infoDiagram-8eee0895-ptaVSwzq.js +511 -0
  151. package/app/out/renderer/assets/init-ZxktEp_H.js +16 -0
  152. package/app/out/renderer/assets/javascript-C3MnDRiU.js +994 -0
  153. package/app/out/renderer/assets/journeyDiagram-c64418c1-aloEGOQp.js +1184 -0
  154. package/app/out/renderer/assets/julia-Bs6JJhYG.js +407 -0
  155. package/app/out/renderer/assets/layout-ZeuHE_aY.js +2217 -0
  156. package/app/out/renderer/assets/line-CAgaGl-S.js +45 -0
  157. package/app/out/renderer/assets/linear-DIg7lTe1.js +539 -0
  158. package/app/out/renderer/assets/livescript-DmzgM3Yt.js +296 -0
  159. package/app/out/renderer/assets/lua-8cJgIlqe.js +256 -0
  160. package/app/out/renderer/assets/mathematica-DNLOL9PQ.js +110 -0
  161. package/app/out/renderer/assets/mbox-Ga7d4MMN.js +117 -0
  162. package/app/out/renderer/assets/mindmap-definition-8da855dc-B8XVoUxz.js +36054 -0
  163. package/app/out/renderer/assets/mirc-Dma3B8rS.js +107 -0
  164. package/app/out/renderer/assets/mllike-DHn7xckP.js +334 -0
  165. package/app/out/renderer/assets/modelica-0d55jYY0.js +147 -0
  166. package/app/out/renderer/assets/mscgen-DdqZYINH.js +135 -0
  167. package/app/out/renderer/assets/mumps-Btr8VblO.js +93 -0
  168. package/app/out/renderer/assets/nginx-DTDtBDVN.js +141 -0
  169. package/app/out/renderer/assets/nsis-3zG7tgur.js +62 -0
  170. package/app/out/renderer/assets/ntriples-CvgOYMpL.js +153 -0
  171. package/app/out/renderer/assets/octave-DYBj3-tl.js +200 -0
  172. package/app/out/renderer/assets/ordinal-DSZU4PqD.js +76 -0
  173. package/app/out/renderer/assets/oz-R_e8WMIi.js +231 -0
  174. package/app/out/renderer/assets/pascal-GD8iposT.js +105 -0
  175. package/app/out/renderer/assets/path-Cp2qmpkd.js +109 -0
  176. package/app/out/renderer/assets/perl-DL9mHpoi.js +1105 -0
  177. package/app/out/renderer/assets/pieDiagram-a8764435-DlwoeBU2.js +770 -0
  178. package/app/out/renderer/assets/pig-C_4T4YIV.js +101 -0
  179. package/app/out/renderer/assets/powershell-B0suO7Vd.js +328 -0
  180. package/app/out/renderer/assets/properties-BR-vP1aU.js +58 -0
  181. package/app/out/renderer/assets/protobuf-BxgpyhoW.js +77 -0
  182. package/app/out/renderer/assets/pug-By0kVCfm.js +405 -0
  183. package/app/out/renderer/assets/puppet-Bdao66PW.js +137 -0
  184. package/app/out/renderer/assets/python-CvWbmiX4.js +427 -0
  185. package/app/out/renderer/assets/q-CrbCVq4a.js +131 -0
  186. package/app/out/renderer/assets/quadrantDiagram-1e28029f-BaSi1XB4.js +1200 -0
  187. package/app/out/renderer/assets/r-V7nswm59.js +170 -0
  188. package/app/out/renderer/assets/requirementDiagram-08caed73-D3EFyegZ.js +1092 -0
  189. package/app/out/renderer/assets/rpm-C-DLY-If.js +109 -0
  190. package/app/out/renderer/assets/ruby-JDKLJNK0.js +330 -0
  191. package/app/out/renderer/assets/sankeyDiagram-a04cb91d-Cv44AsnM.js +1174 -0
  192. package/app/out/renderer/assets/sas-D2UG-yhZ.js +207 -0
  193. package/app/out/renderer/assets/scheme-BKzrkGJD.js +222 -0
  194. package/app/out/renderer/assets/sequenceDiagram-c5b8d532-CuUBu-x4.js +3337 -0
  195. package/app/out/renderer/assets/shell-BlsXDxCn.js +222 -0
  196. package/app/out/renderer/assets/sieve-CjwBwOY5.js +135 -0
  197. package/app/out/renderer/assets/simple-mode-DMneyfDu.js +130 -0
  198. package/app/out/renderer/assets/smalltalk-BOIGQuhN.js +121 -0
  199. package/app/out/renderer/assets/solr-CwD7U71z.js +69 -0
  200. package/app/out/renderer/assets/sparql-DYskk2vE.js +249 -0
  201. package/app/out/renderer/assets/spreadsheet-Bgtt3oLP.js +87 -0
  202. package/app/out/renderer/assets/sql-BSrOzCRI.js +354 -0
  203. package/app/out/renderer/assets/stateDiagram-1ecb1508-BOU34Zp4.js +454 -0
  204. package/app/out/renderer/assets/stateDiagram-v2-c2b004d7-BgRoffou.js +326 -0
  205. package/app/out/renderer/assets/stex-B6LNC55o.js +231 -0
  206. package/app/out/renderer/assets/styles-b4e223ce-BMr9TPuj.js +1483 -0
  207. package/app/out/renderer/assets/styles-ca3715f6-DgbNw99p.js +1363 -0
  208. package/app/out/renderer/assets/styles-d45a18b0-DtRYKYKf.js +574 -0
  209. package/app/out/renderer/assets/stylus-BkS-boTH.js +565 -0
  210. package/app/out/renderer/assets/svgDrawCommon-b86b1483-Bein03PD.js +100 -0
  211. package/app/out/renderer/assets/swift-FRZi1uvB.js +291 -0
  212. package/app/out/renderer/assets/tcl-CUcaCdmq.js +114 -0
  213. package/app/out/renderer/assets/textile-BnFpjsrl.js +414 -0
  214. package/app/out/renderer/assets/tiddlywiki-CjprD-Qp.js +218 -0
  215. package/app/out/renderer/assets/tiki-B4EPSQ1G.js +265 -0
  216. package/app/out/renderer/assets/timeline-definition-faaaa080-BlWpLE_4.js +1212 -0
  217. package/app/out/renderer/assets/toml-BOuWGMcf.js +76 -0
  218. package/app/out/renderer/assets/troff-E1bJ0PPL.js +61 -0
  219. package/app/out/renderer/assets/ttcn-cfg-Dc39-fIP.js +133 -0
  220. package/app/out/renderer/assets/ttcn-tKd4HLu4.js +192 -0
  221. package/app/out/renderer/assets/turtle-Dq7-1WAf.js +124 -0
  222. package/app/out/renderer/assets/vb-Dp90gtsv.js +196 -0
  223. package/app/out/renderer/assets/vbscript-CI6_mxxU.js +479 -0
  224. package/app/out/renderer/assets/velocity-BwIZK1TH.js +149 -0
  225. package/app/out/renderer/assets/verilog-DDCYnHN8.js +430 -0
  226. package/app/out/renderer/assets/vhdl-DCkMIyT9.js +158 -0
  227. package/app/out/renderer/assets/webidl-BTLTThCm.js +204 -0
  228. package/app/out/renderer/assets/xquery-BgiOC5Ce.js +525 -0
  229. package/app/out/renderer/assets/xychartDiagram-f5964ef8-Bhga-YXm.js +1799 -0
  230. package/app/out/renderer/assets/yacas-b5lAVEIl.js +130 -0
  231. package/app/out/renderer/assets/z80-BZV19vqv.js +93 -0
  232. package/app/out/renderer/index.html +13 -0
  233. package/app/out/skills/community-builtin/README.md +29 -0
  234. package/app/out/skills/community-builtin/document-docx/SKILL.md +44 -0
  235. package/app/out/skills/community-builtin/document-docx/scripts/docx-to-markdown.sh +20 -0
  236. package/app/out/skills/community-builtin/document-docx/scripts/extract-docx-text.sh +28 -0
  237. package/app/out/skills/community-builtin/document-docx/scripts/init-docx-template.sh +32 -0
  238. package/app/out/skills/community-builtin/document-docx/scripts/setup-docx-tools.sh +10 -0
  239. package/app/out/skills/community-builtin/markitdown/SKILL.md +105 -0
  240. package/app/out/skills/community-builtin/markitdown/scripts/batch-convert.sh +40 -0
  241. package/app/out/skills/community-builtin/markitdown/scripts/convert-file.sh +24 -0
  242. package/app/out/skills/community-builtin/markitdown/scripts/setup-markitdown.sh +10 -0
  243. package/app/out/skills/community-builtin/repo-quick-audit/SKILL.md +27 -0
  244. package/app/out/skills/community-builtin/repo-quick-audit/scripts/audit-basics.sh +19 -0
  245. package/app/out/skills/research-pilot-default-project-skills/README.md +23 -0
  246. package/app/out/skills/research-pilot-default-project-skills/citation-management/SKILL.md +39 -0
  247. package/app/out/skills/research-pilot-default-project-skills/citation-management/scripts/doi-to-bibtex.sh +25 -0
  248. package/app/out/skills/research-pilot-default-project-skills/citation-management/scripts/normalize-bibtex-keys.sh +51 -0
  249. package/app/out/skills/research-pilot-default-project-skills/citation-management/scripts/setup-citation-tools.sh +10 -0
  250. package/app/out/skills/research-pilot-default-project-skills/citation-management/scripts/validate-bib.sh +31 -0
  251. package/app/out/skills/research-pilot-default-project-skills/matplotlib/SKILL.md +34 -0
  252. package/app/out/skills/research-pilot-default-project-skills/matplotlib/references/api_reference.md +412 -0
  253. package/app/out/skills/research-pilot-default-project-skills/matplotlib/references/common_issues.md +563 -0
  254. package/app/out/skills/research-pilot-default-project-skills/matplotlib/references/plot_types.md +476 -0
  255. package/app/out/skills/research-pilot-default-project-skills/matplotlib/references/styling_guide.md +589 -0
  256. package/app/out/skills/research-pilot-default-project-skills/matplotlib/references/subagent_quickstart.md +30 -0
  257. package/app/out/skills/research-pilot-default-project-skills/matplotlib/scripts/plot_template.py +401 -0
  258. package/app/out/skills/research-pilot-default-project-skills/matplotlib/scripts/style_configurator.py +409 -0
  259. package/app/out/skills/research-pilot-default-project-skills/research-grants/SKILL.md +38 -0
  260. package/app/out/skills/research-pilot-default-project-skills/research-grants/scripts/check-grant-compliance.sh +40 -0
  261. package/app/out/skills/research-pilot-default-project-skills/research-grants/scripts/grant-summary-card.sh +32 -0
  262. package/app/out/skills/research-pilot-default-project-skills/research-grants/scripts/init-grant-structure.sh +70 -0
  263. package/app/package.json +77 -0
  264. package/bin/cli.mjs +56 -0
  265. package/lib/README.md +145 -0
  266. package/lib/skills/_generated.ts +13 -0
  267. package/lib/skills/builtin/brainstorming-research-ideas/SKILL.md +280 -0
  268. package/lib/skills/builtin/coding/SKILL.md +114 -0
  269. package/lib/skills/builtin/creative-thinking-for-research/SKILL.md +273 -0
  270. package/lib/skills/builtin/matplotlib/SKILL.md +361 -0
  271. package/lib/skills/builtin/matplotlib/references/api_reference.md +412 -0
  272. package/lib/skills/builtin/matplotlib/references/common_issues.md +563 -0
  273. package/lib/skills/builtin/matplotlib/references/plot_types.md +476 -0
  274. package/lib/skills/builtin/matplotlib/references/styling_guide.md +589 -0
  275. package/lib/skills/builtin/matplotlib/scripts/plot_template.py +401 -0
  276. package/lib/skills/builtin/matplotlib/scripts/style_configurator.py +409 -0
  277. package/lib/skills/builtin/paper-writing/SKILL.md +554 -0
  278. package/lib/skills/builtin/paper-writing/references/checklists.md +524 -0
  279. package/lib/skills/builtin/paper-writing/references/citation-workflow.md +562 -0
  280. package/lib/skills/builtin/paper-writing/references/reviewer-guidelines.md +462 -0
  281. package/lib/skills/builtin/paper-writing/references/sources.md +189 -0
  282. package/lib/skills/builtin/paper-writing/references/systems-conferences.md +260 -0
  283. package/lib/skills/builtin/paper-writing/references/writing-guide.md +476 -0
  284. package/lib/skills/builtin/paper-writing/templates/README.md +408 -0
  285. package/lib/skills/builtin/paper-writing/templates/aaai2026/README.md +534 -0
  286. package/lib/skills/builtin/paper-writing/templates/aaai2026/aaai2026-unified-supp.tex +144 -0
  287. package/lib/skills/builtin/paper-writing/templates/aaai2026/aaai2026-unified-template.tex +952 -0
  288. package/lib/skills/builtin/paper-writing/templates/aaai2026/aaai2026.bib +111 -0
  289. package/lib/skills/builtin/paper-writing/templates/aaai2026/aaai2026.bst +1493 -0
  290. package/lib/skills/builtin/paper-writing/templates/aaai2026/aaai2026.sty +315 -0
  291. package/lib/skills/builtin/paper-writing/templates/acl/README.md +50 -0
  292. package/lib/skills/builtin/paper-writing/templates/acl/acl.sty +312 -0
  293. package/lib/skills/builtin/paper-writing/templates/acl/acl_latex.tex +377 -0
  294. package/lib/skills/builtin/paper-writing/templates/acl/acl_lualatex.tex +101 -0
  295. package/lib/skills/builtin/paper-writing/templates/acl/acl_natbib.bst +1940 -0
  296. package/lib/skills/builtin/paper-writing/templates/acl/anthology.bib.txt +26 -0
  297. package/lib/skills/builtin/paper-writing/templates/acl/custom.bib +70 -0
  298. package/lib/skills/builtin/paper-writing/templates/acl/formatting.md +326 -0
  299. package/lib/skills/builtin/paper-writing/templates/asplos2027/main.tex +459 -0
  300. package/lib/skills/builtin/paper-writing/templates/asplos2027/references.bib +135 -0
  301. package/lib/skills/builtin/paper-writing/templates/colm2025/README.md +3 -0
  302. package/lib/skills/builtin/paper-writing/templates/colm2025/colm2025_conference.bib +11 -0
  303. package/lib/skills/builtin/paper-writing/templates/colm2025/colm2025_conference.bst +1440 -0
  304. package/lib/skills/builtin/paper-writing/templates/colm2025/colm2025_conference.pdf +0 -0
  305. package/lib/skills/builtin/paper-writing/templates/colm2025/colm2025_conference.sty +218 -0
  306. package/lib/skills/builtin/paper-writing/templates/colm2025/colm2025_conference.tex +305 -0
  307. package/lib/skills/builtin/paper-writing/templates/colm2025/fancyhdr.sty +485 -0
  308. package/lib/skills/builtin/paper-writing/templates/colm2025/math_commands.tex +508 -0
  309. package/lib/skills/builtin/paper-writing/templates/colm2025/natbib.sty +1246 -0
  310. package/lib/skills/builtin/paper-writing/templates/iclr2026/fancyhdr.sty +485 -0
  311. package/lib/skills/builtin/paper-writing/templates/iclr2026/iclr2026_conference.bib +24 -0
  312. package/lib/skills/builtin/paper-writing/templates/iclr2026/iclr2026_conference.bst +1440 -0
  313. package/lib/skills/builtin/paper-writing/templates/iclr2026/iclr2026_conference.pdf +0 -0
  314. package/lib/skills/builtin/paper-writing/templates/iclr2026/iclr2026_conference.sty +246 -0
  315. package/lib/skills/builtin/paper-writing/templates/iclr2026/iclr2026_conference.tex +414 -0
  316. package/lib/skills/builtin/paper-writing/templates/iclr2026/math_commands.tex +508 -0
  317. package/lib/skills/builtin/paper-writing/templates/iclr2026/natbib.sty +1246 -0
  318. package/lib/skills/builtin/paper-writing/templates/icml2026/algorithm.sty +79 -0
  319. package/lib/skills/builtin/paper-writing/templates/icml2026/algorithmic.sty +201 -0
  320. package/lib/skills/builtin/paper-writing/templates/icml2026/example_paper.bib +75 -0
  321. package/lib/skills/builtin/paper-writing/templates/icml2026/example_paper.pdf +0 -0
  322. package/lib/skills/builtin/paper-writing/templates/icml2026/example_paper.tex +662 -0
  323. package/lib/skills/builtin/paper-writing/templates/icml2026/fancyhdr.sty +864 -0
  324. package/lib/skills/builtin/paper-writing/templates/icml2026/icml2026.bst +1443 -0
  325. package/lib/skills/builtin/paper-writing/templates/icml2026/icml2026.sty +767 -0
  326. package/lib/skills/builtin/paper-writing/templates/icml2026/icml_numpapers.pdf +0 -0
  327. package/lib/skills/builtin/paper-writing/templates/neurips2025/Makefile +36 -0
  328. package/lib/skills/builtin/paper-writing/templates/neurips2025/extra_pkgs.tex +53 -0
  329. package/lib/skills/builtin/paper-writing/templates/neurips2025/main.tex +38 -0
  330. package/lib/skills/builtin/paper-writing/templates/neurips2025/neurips.sty +382 -0
  331. package/lib/skills/builtin/paper-writing/templates/nsdi2027/main.tex +426 -0
  332. package/lib/skills/builtin/paper-writing/templates/nsdi2027/references.bib +151 -0
  333. package/lib/skills/builtin/paper-writing/templates/nsdi2027/usenix-2020-09.sty +83 -0
  334. package/lib/skills/builtin/paper-writing/templates/osdi2026/main.tex +429 -0
  335. package/lib/skills/builtin/paper-writing/templates/osdi2026/references.bib +150 -0
  336. package/lib/skills/builtin/paper-writing/templates/osdi2026/usenix-2020-09.sty +83 -0
  337. package/lib/skills/builtin/paper-writing/templates/sosp2026/main.tex +532 -0
  338. package/lib/skills/builtin/paper-writing/templates/sosp2026/references.bib +148 -0
  339. package/lib/skills/builtin/research-grants/SKILL.md +958 -0
  340. package/lib/skills/builtin/research-grants/assets/budget_justification_template.md +453 -0
  341. package/lib/skills/builtin/research-grants/assets/nih_specific_aims_template.md +166 -0
  342. package/lib/skills/builtin/research-grants/assets/nsf_project_summary_template.md +92 -0
  343. package/lib/skills/builtin/research-grants/references/README.md +285 -0
  344. package/lib/skills/builtin/research-grants/references/broader_impacts.md +392 -0
  345. package/lib/skills/builtin/research-grants/references/darpa_guidelines.md +636 -0
  346. package/lib/skills/builtin/research-grants/references/doe_guidelines.md +586 -0
  347. package/lib/skills/builtin/research-grants/references/nih_guidelines.md +851 -0
  348. package/lib/skills/builtin/research-grants/references/nsf_guidelines.md +570 -0
  349. package/lib/skills/builtin/research-grants/references/nstc_guidelines.md +733 -0
  350. package/lib/skills/builtin/research-grants/references/specific_aims_guide.md +458 -0
  351. package/lib/skills/builtin/rewrite-humanize/SKILL.md +116 -0
  352. package/lib/skills/builtin/rewrite-humanize/references/cs-venue-tone.md +57 -0
  353. package/lib/skills/builtin/rewrite-humanize/references/lexicon.md +50 -0
  354. package/lib/skills/builtin/scholar-evaluation/SKILL.md +300 -0
  355. package/lib/skills/builtin/scholar-evaluation/references/evaluation_framework.md +663 -0
  356. package/lib/skills/builtin/scholar-evaluation/scripts/calculate_scores.py +379 -0
  357. package/lib/skills/builtin/scientific-schematics/SKILL.md +603 -0
  358. package/lib/skills/builtin/scientific-schematics/references/QUICK_REFERENCE.md +182 -0
  359. package/lib/skills/builtin/scientific-schematics/references/README.md +292 -0
  360. package/lib/skills/builtin/scientific-schematics/references/best_practices.md +560 -0
  361. package/lib/skills/builtin/scientific-schematics/scripts/__pycache__/generate_schematic.cpython-312.pyc +0 -0
  362. package/lib/skills/builtin/scientific-schematics/scripts/__pycache__/generate_schematic_ai.cpython-312.pyc +0 -0
  363. package/lib/skills/builtin/scientific-schematics/scripts/example_usage.sh +85 -0
  364. package/lib/skills/builtin/scientific-schematics/scripts/generate_schematic.py +141 -0
  365. package/lib/skills/builtin/scientific-schematics/scripts/generate_schematic_ai.py +910 -0
  366. package/lib/skills/builtin/scientific-visualization/SKILL.md +749 -0
  367. package/lib/skills/builtin/scientific-visualization/assets/color_palettes.py +197 -0
  368. package/lib/skills/builtin/scientific-visualization/assets/nature.mplstyle +63 -0
  369. package/lib/skills/builtin/scientific-visualization/assets/presentation.mplstyle +61 -0
  370. package/lib/skills/builtin/scientific-visualization/assets/publication.mplstyle +68 -0
  371. package/lib/skills/builtin/scientific-visualization/references/color_palettes.md +348 -0
  372. package/lib/skills/builtin/scientific-visualization/references/journal_requirements.md +320 -0
  373. package/lib/skills/builtin/scientific-visualization/references/matplotlib_examples.md +620 -0
  374. package/lib/skills/builtin/scientific-visualization/references/publication_guidelines.md +205 -0
  375. package/lib/skills/builtin/scientific-visualization/scripts/figure_export.py +343 -0
  376. package/lib/skills/builtin/scientific-visualization/scripts/style_presets.py +416 -0
  377. package/lib/skills/builtin/scientific-writing/SKILL.md +745 -0
  378. package/lib/skills/builtin/scientific-writing/assets/REPORT_FORMATTING_GUIDE.md +574 -0
  379. package/lib/skills/builtin/scientific-writing/assets/scientific_report.sty +606 -0
  380. package/lib/skills/builtin/scientific-writing/assets/scientific_report_template.tex +449 -0
  381. package/lib/skills/builtin/scientific-writing/references/citation_styles.md +720 -0
  382. package/lib/skills/builtin/scientific-writing/references/figures_tables.md +806 -0
  383. package/lib/skills/builtin/scientific-writing/references/imrad_structure.md +686 -0
  384. package/lib/skills/builtin/scientific-writing/references/professional_report_formatting.md +664 -0
  385. package/lib/skills/builtin/scientific-writing/references/reporting_guidelines.md +748 -0
  386. package/lib/skills/builtin/scientific-writing/references/writing_principles.md +824 -0
  387. package/lib/skills/builtin/seaborn/SKILL.md +674 -0
  388. package/lib/skills/builtin/seaborn/references/examples.md +822 -0
  389. package/lib/skills/builtin/seaborn/references/function_reference.md +770 -0
  390. package/lib/skills/builtin/seaborn/references/objects_interface.md +964 -0
  391. package/lib/skills/data-analysis/SKILL.md +285 -0
  392. package/lib/skills/generate-skill-content.mjs +58 -0
  393. package/lib/skills/index.ts +34 -0
  394. package/lib/skills/loader.ts +452 -0
  395. package/package.json +62 -0
@@ -0,0 +1,170 @@
1
+ function wordObj(words) {
2
+ var res = {};
3
+ for (var i = 0; i < words.length; ++i) res[words[i]] = true;
4
+ return res;
5
+ }
6
+ var commonAtoms = ["NULL", "NA", "Inf", "NaN", "NA_integer_", "NA_real_", "NA_complex_", "NA_character_", "TRUE", "FALSE"];
7
+ var commonBuiltins = ["list", "quote", "bquote", "eval", "return", "call", "parse", "deparse"];
8
+ var commonKeywords = ["if", "else", "repeat", "while", "function", "for", "in", "next", "break"];
9
+ var commonBlockKeywords = ["if", "else", "repeat", "while", "function", "for"];
10
+ var atoms = wordObj(commonAtoms);
11
+ var builtins = wordObj(commonBuiltins);
12
+ var keywords = wordObj(commonKeywords);
13
+ var blockkeywords = wordObj(commonBlockKeywords);
14
+ var opChars = /[+\-*\/^<>=!&|~$:]/;
15
+ var curPunc;
16
+ function tokenBase(stream, state) {
17
+ curPunc = null;
18
+ var ch = stream.next();
19
+ if (ch == "#") {
20
+ stream.skipToEnd();
21
+ return "comment";
22
+ } else if (ch == "0" && stream.eat("x")) {
23
+ stream.eatWhile(/[\da-f]/i);
24
+ return "number";
25
+ } else if (ch == "." && stream.eat(/\d/)) {
26
+ stream.match(/\d*(?:e[+\-]?\d+)?/);
27
+ return "number";
28
+ } else if (/\d/.test(ch)) {
29
+ stream.match(/\d*(?:\.\d+)?(?:e[+\-]\d+)?L?/);
30
+ return "number";
31
+ } else if (ch == "'" || ch == '"') {
32
+ state.tokenize = tokenString(ch);
33
+ return "string";
34
+ } else if (ch == "`") {
35
+ stream.match(/[^`]+`/);
36
+ return "string.special";
37
+ } else if (ch == "." && stream.match(/.(?:[.]|\d+)/)) {
38
+ return "keyword";
39
+ } else if (/[a-zA-Z\.]/.test(ch)) {
40
+ stream.eatWhile(/[\w\.]/);
41
+ var word = stream.current();
42
+ if (atoms.propertyIsEnumerable(word)) return "atom";
43
+ if (keywords.propertyIsEnumerable(word)) {
44
+ if (blockkeywords.propertyIsEnumerable(word) && !stream.match(/\s*if(\s+|$)/, false))
45
+ curPunc = "block";
46
+ return "keyword";
47
+ }
48
+ if (builtins.propertyIsEnumerable(word)) return "builtin";
49
+ return "variable";
50
+ } else if (ch == "%") {
51
+ if (stream.skipTo("%")) stream.next();
52
+ return "variableName.special";
53
+ } else if (ch == "<" && stream.eat("-") || ch == "<" && stream.match("<-") || ch == "-" && stream.match(/>>?/)) {
54
+ return "operator";
55
+ } else if (ch == "=" && state.ctx.argList) {
56
+ return "operator";
57
+ } else if (opChars.test(ch)) {
58
+ if (ch == "$") return "operator";
59
+ stream.eatWhile(opChars);
60
+ return "operator";
61
+ } else if (/[\(\){}\[\];]/.test(ch)) {
62
+ curPunc = ch;
63
+ if (ch == ";") return "punctuation";
64
+ return null;
65
+ } else {
66
+ return null;
67
+ }
68
+ }
69
+ function tokenString(quote) {
70
+ return function(stream, state) {
71
+ if (stream.eat("\\")) {
72
+ var ch = stream.next();
73
+ if (ch == "x") stream.match(/^[a-f0-9]{2}/i);
74
+ else if ((ch == "u" || ch == "U") && stream.eat("{") && stream.skipTo("}")) stream.next();
75
+ else if (ch == "u") stream.match(/^[a-f0-9]{4}/i);
76
+ else if (ch == "U") stream.match(/^[a-f0-9]{8}/i);
77
+ else if (/[0-7]/.test(ch)) stream.match(/^[0-7]{1,2}/);
78
+ return "string.special";
79
+ } else {
80
+ var next;
81
+ while ((next = stream.next()) != null) {
82
+ if (next == quote) {
83
+ state.tokenize = tokenBase;
84
+ break;
85
+ }
86
+ if (next == "\\") {
87
+ stream.backUp(1);
88
+ break;
89
+ }
90
+ }
91
+ return "string";
92
+ }
93
+ };
94
+ }
95
+ var ALIGN_YES = 1, ALIGN_NO = 2, BRACELESS = 4;
96
+ function push(state, type, stream) {
97
+ state.ctx = {
98
+ type,
99
+ indent: state.indent,
100
+ flags: 0,
101
+ column: stream.column(),
102
+ prev: state.ctx
103
+ };
104
+ }
105
+ function setFlag(state, flag) {
106
+ var ctx = state.ctx;
107
+ state.ctx = {
108
+ type: ctx.type,
109
+ indent: ctx.indent,
110
+ flags: ctx.flags | flag,
111
+ column: ctx.column,
112
+ prev: ctx.prev
113
+ };
114
+ }
115
+ function pop(state) {
116
+ state.indent = state.ctx.indent;
117
+ state.ctx = state.ctx.prev;
118
+ }
119
+ const r = {
120
+ name: "r",
121
+ startState: function(indentUnit) {
122
+ return {
123
+ tokenize: tokenBase,
124
+ ctx: {
125
+ type: "top",
126
+ indent: -indentUnit,
127
+ flags: ALIGN_NO
128
+ },
129
+ indent: 0,
130
+ afterIdent: false
131
+ };
132
+ },
133
+ token: function(stream, state) {
134
+ if (stream.sol()) {
135
+ if ((state.ctx.flags & 3) == 0) state.ctx.flags |= ALIGN_NO;
136
+ if (state.ctx.flags & BRACELESS) pop(state);
137
+ state.indent = stream.indentation();
138
+ }
139
+ if (stream.eatSpace()) return null;
140
+ var style = state.tokenize(stream, state);
141
+ if (style != "comment" && (state.ctx.flags & ALIGN_NO) == 0) setFlag(state, ALIGN_YES);
142
+ if ((curPunc == ";" || curPunc == "{" || curPunc == "}") && state.ctx.type == "block") pop(state);
143
+ if (curPunc == "{") push(state, "}", stream);
144
+ else if (curPunc == "(") {
145
+ push(state, ")", stream);
146
+ if (state.afterIdent) state.ctx.argList = true;
147
+ } else if (curPunc == "[") push(state, "]", stream);
148
+ else if (curPunc == "block") push(state, "block", stream);
149
+ else if (curPunc == state.ctx.type) pop(state);
150
+ else if (state.ctx.type == "block" && style != "comment") setFlag(state, BRACELESS);
151
+ state.afterIdent = style == "variable" || style == "keyword";
152
+ return style;
153
+ },
154
+ indent: function(state, textAfter, cx) {
155
+ if (state.tokenize != tokenBase) return 0;
156
+ var firstChar = textAfter && textAfter.charAt(0), ctx = state.ctx, closing = firstChar == ctx.type;
157
+ if (ctx.flags & BRACELESS) ctx = ctx.prev;
158
+ if (ctx.type == "block") return ctx.indent + (firstChar == "{" ? 0 : cx.unit);
159
+ else if (ctx.flags & ALIGN_YES) return ctx.column + (closing ? 0 : 1);
160
+ else return ctx.indent + (closing ? 0 : cx.unit);
161
+ },
162
+ languageData: {
163
+ wordChars: ".",
164
+ commentTokens: { line: "#" },
165
+ autocomplete: commonAtoms.concat(commonBuiltins, commonKeywords)
166
+ }
167
+ };
168
+ export {
169
+ r
170
+ };