research-copilot 0.1.0

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Files changed (395) hide show
  1. package/LICENSE +21 -0
  2. package/README.md +190 -0
  3. package/app/build/icon.icns +0 -0
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@@ -0,0 +1,958 @@
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+ ---
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+ name: research-grants
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+ description: Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
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+ category: Writing & Review
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+ depends: [scientific-schematics]
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+ tags: [science, writing, grants]
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+ triggers: [write grant, grant proposal, NSF proposal, NIH proposal, specific aims, broader impacts, NSTC, 写基金, 基金申报, research proposal, funding application]
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+ allowed-tools: [Read, Write, Edit, Bash]
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+ license: MIT license
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+ metadata:
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+ skill-author: K-Dense Inc.
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+ ---
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+
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+ # Research Grant Writing
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+
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+ ## Overview
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+
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+ Research grant writing is the process of developing competitive funding proposals for federal agencies and foundations. Master agency-specific requirements, review criteria, narrative structure, budget preparation, and compliance for NSF (National Science Foundation), NIH (National Institutes of Health), DOE (Department of Energy), DARPA (Defense Advanced Research Projects Agency), and Taiwan's NSTC (National Science and Technology Council) submissions.
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+
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+ **Critical Principle: Grants are persuasive documents that must simultaneously demonstrate scientific rigor, innovation, feasibility, and broader impact.** Each agency has distinct priorities, review criteria, formatting requirements, and strategic goals that must be addressed.
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+
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+ ## When to Use This Skill
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+
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+ This skill should be used when:
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+ - Writing research proposals for NSF, NIH, DOE, DARPA, or NSTC programs
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+ - Preparing project descriptions, specific aims, or technical narratives
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+ - Developing broader impacts or significance statements
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+ - Creating research timelines and milestone plans
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+ - Preparing budget justifications and personnel allocation plans
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+ - Responding to program solicitations or funding announcements
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+ - Addressing reviewer comments in resubmissions
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+ - Planning multi-institutional collaborative proposals
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+ - Writing preliminary data or feasibility sections
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+ - Preparing biosketches, CVs, or facilities descriptions
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+
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+ ## Visual Enhancement with Scientific Schematics
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+
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+ **⚠️ MANDATORY: Every research grant proposal MUST include at least 1-2 AI-generated figures using the scientific-schematics skill.**
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+
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+ This is not optional. Grant proposals without visual elements are incomplete and less competitive. Before finalizing any document:
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+ 1. Generate at minimum ONE schematic or diagram (e.g., project timeline, methodology flowchart, or conceptual framework)
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+ 2. Prefer 2-3 figures for comprehensive proposals (research workflow, Gantt chart, preliminary data visualization)
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+
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+ **How to generate figures:**
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+ - Use the **scientific-schematics** skill to generate AI-powered publication-quality diagrams
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+ - Simply describe your desired diagram in natural language
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+ - Nano Banana Pro will automatically generate, review, and refine the schematic
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+
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+ **How to generate schematics:**
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+ ```bash
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+ python @skill:scientific-schematics/scripts/generate_schematic.py "your diagram description" -o @ws/figures/output.png
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+ ```
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+
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+ The AI will automatically:
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+ - Create publication-quality images with proper formatting
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+ - Review and refine through multiple iterations
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+ - Ensure accessibility (colorblind-friendly, high contrast)
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+ - Save outputs in the @ws/figures/ directory
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+
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+ **When to add schematics:**
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+ - Research methodology and workflow diagrams
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+ - Project timeline Gantt charts
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+ - Conceptual framework illustrations
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+ - System architecture diagrams (for technical proposals)
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+ - Experimental design flowcharts
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+ - Broader impacts activity diagrams
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+ - Collaboration network diagrams
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+ - Any complex concept that benefits from visualization
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+
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+ For detailed guidance on creating schematics, refer to the scientific-schematics skill documentation.
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+
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+ ---
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+
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+ ## Agency-Specific Overview
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+
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+ ### NSF (National Science Foundation)
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+ **Mission**: Promote the progress of science and advance national health, prosperity, and welfare
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+
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+ **Key Features**:
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+ - Intellectual Merit + Broader Impacts (equally weighted)
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+ - 15-page project description limit (most programs)
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+ - Emphasis on education, diversity, and societal benefit
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+ - Collaborative research encouraged
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+ - Open data and open science emphasis
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+ - Merit review process with panel + ad hoc reviewers
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+
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+ ### NIH (National Institutes of Health)
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+ **Mission**: Enhance health, lengthen life, and reduce illness and disability
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+
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+ **Key Features**:
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+ - Specific Aims (1 page) + Research Strategy (12 pages for R01)
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+ - Significance, Innovation, Approach as core review criteria
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+ - Preliminary data typically required for R01s
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+ - Emphasis on rigor, reproducibility, and clinical relevance
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+ - Modular budgets ($250K increments) for most R01s
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+ - Multiple resubmission opportunities
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+
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+ ### DOE (Department of Energy)
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+ **Mission**: Ensure America's security and prosperity through energy, environmental, and nuclear challenges
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+
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+ **Key Features**:
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+ - Focus on energy, climate, computational science, basic energy sciences
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+ - Often requires cost sharing or industry partnerships
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+ - Emphasis on national laboratory collaboration
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+ - Strong computational and experimental integration
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+ - Energy innovation and commercialization pathways
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+ - Varies by office (ARPA-E, Office of Science, EERE, etc.)
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+
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+ ### DARPA (Defense Advanced Research Projects Agency)
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+ **Mission**: Make pivotal investments in breakthrough technologies for national security
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+
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+ **Key Features**:
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+ - High-risk, high-reward transformative research
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+ - Focus on "DARPA-hard" problems (what if true, who cares)
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+ - Emphasis on prototypes, demonstrations, and transition paths
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+ - Often requires multiple phases (feasibility, development, demonstration)
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+ - Strong project management and milestone tracking
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+ - Teaming and collaboration often required
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+ - Varies dramatically by program manager and BAA (Broad Agency Announcement)
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+
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+ ### NSTC (National Science and Technology Council - Taiwan)
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+ **Mission**: Advance scientific breakthrough, industrial application, and societal impact in Taiwan.
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+
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+ **Key Features**:
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+ - **CM03 Form**: The core technical proposal format.
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+ - **Bilingual**: Abstract required in both Chinese and English.
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+ - **Innovation & Feasibility**: Primary review focus.
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+ - **Preliminary Data**: Highly critical for credibility.
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+ - **Research Architecture Diagram**: A mandatory visual element for clarity.
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+
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+ ## Core Components of Research Proposals
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+
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+ ### 1. Executive Summary / Project Summary / Abstract
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+
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+ Every proposal needs a concise overview that communicates the essential elements of the research to both technical reviewers and program officers.
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+
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+ **Purpose**: Provide a standalone summary that captures the research vision, significance, and approach
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+
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+ **Length**:
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+ - NSF: 1 page (Project Summary with separate Overview, Intellectual Merit, Broader Impacts)
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+ - NIH: 30 lines (Project Summary/Abstract)
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+ - DOE: Varies (typically 1 page)
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+ - DARPA: Varies (often 1-2 pages)
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+
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+ **Essential Elements**:
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+ - Clear statement of the problem or research question
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+ - Why this problem matters (significance, urgency, impact)
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+ - Novel approach or innovation
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+ - Expected outcomes and deliverables
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+ - Qualifications of the team
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+ - Broader impacts or translational pathway
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+
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+ **Writing Strategy**:
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+ - Open with a compelling hook that establishes importance
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+ - Use accessible language (avoid jargon in opening sentences)
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+ - State specific, measurable objectives
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+ - Convey enthusiasm and confidence
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+ - Ensure every sentence adds value (no filler)
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+ - End with transformative vision or impact statement
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+
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+ **Common Mistakes to Avoid**:
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+ - Being too technical or detailed (save for project description)
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+ - Failing to articulate "why now" or "why this team"
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+ - Vague objectives or outcomes
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+ - Neglecting broader impacts or significance
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+ - Generic statements that could apply to any proposal
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+
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+ ### 2. Project Description / Research Strategy
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+
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+ The core technical narrative that presents the research plan in detail.
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+
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+ **Structure Varies by Agency:**
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+
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+ **NSF Project Description** (typically 15 pages):
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+ - Introduction and background
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+ - Research objectives and questions
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+ - Preliminary results (if applicable)
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+ - Research plan and methodology
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+ - Timeline and milestones
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+ - Broader impacts (integrated throughout or separate section)
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+ - Prior NSF support (if applicable)
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+
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+ **NIH Research Strategy** (12 pages for R01):
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+ - Significance (why the problem matters)
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+ - Innovation (what's novel and transformative)
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+ - Approach (detailed research plan)
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+ - Preliminary data
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+ - Research design and methods
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+ - Expected outcomes
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+ - Potential problems and alternative approaches
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+
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+ **DOE Project Narrative** (varies):
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+ - Background and significance
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+ - Technical approach and innovation
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+ - Qualifications and experience
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+ - Facilities and resources
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+ - Project management and timeline
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+
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+ **DARPA Technical Volume** (varies):
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+ - Technical challenge and innovation
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+ - Approach and methodology
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+ - Schedule and milestones
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+ - Deliverables and metrics
204
+ - Team qualifications
205
+ - Risk assessment and mitigation
206
+
207
+ For detailed agency-specific guidance, refer to:
208
+ - `@skill/references/nsf_guidelines.md`
209
+ - `@skill/references/nih_guidelines.md`
210
+ - `@skill/references/doe_guidelines.md`
211
+ - `@skill/references/darpa_guidelines.md`
212
+ - `@skill/references/nstc_guidelines.md`
213
+
214
+ ### 3. Specific Aims (NIH) or Objectives (NSF/DOE/DARPA)
215
+
216
+ Clear, testable goals that structure the research plan.
217
+
218
+ **NIH Specific Aims Page** (1 page):
219
+ - Opening paragraph: Gap in knowledge and significance
220
+ - Long-term goal and immediate objectives
221
+ - Central hypothesis or research question
222
+ - 2-4 specific aims with sub-aims
223
+ - Expected outcomes and impact
224
+ - Payoff paragraph: Why this matters
225
+
226
+ **Structure for Each Aim:**
227
+ - Aim statement (1-2 sentences, starts with action verb)
228
+ - Rationale (why this aim, preliminary data support)
229
+ - Working hypothesis (testable prediction)
230
+ - Approach summary (brief methods overview)
231
+ - Expected outcomes and interpretation
232
+
233
+ **Writing Strategy**:
234
+ - Make aims independent but complementary
235
+ - Ensure each aim is achievable within timeline and budget
236
+ - Provide enough detail to judge feasibility
237
+ - Include contingency plans or alternative approaches
238
+ - Use parallel structure across aims
239
+ - Clearly state what will be learned from each aim
240
+
241
+ For detailed guidance, refer to `@skill/references/specific_aims_guide.md`.
242
+
243
+ ### 4. Broader Impacts (NSF) / Significance (NIH)
244
+
245
+ Articulate the societal, educational, or translational value of the research.
246
+
247
+ **NSF Broader Impacts** (critical component, equal weight with Intellectual Merit):
248
+
249
+ NSF explicitly evaluates broader impacts. Address at least one of these areas:
250
+ 1. **Advancing discovery and understanding while promoting teaching, training, and learning**
251
+ - Integration of research and education
252
+ - Training of students and postdocs
253
+ - Curriculum development
254
+ - Educational materials and resources
255
+
256
+ 2. **Broadening participation of underrepresented groups**
257
+ - Recruitment and retention strategies
258
+ - Partnerships with minority-serving institutions
259
+ - Outreach to underrepresented communities
260
+ - Mentoring programs
261
+
262
+ 3. **Enhancing infrastructure for research and education**
263
+ - Shared facilities or instrumentation
264
+ - Cyberinfrastructure and data resources
265
+ - Community-wide tools or databases
266
+ - Open-source software or methods
267
+
268
+ 4. **Broad dissemination to enhance scientific and technological understanding**
269
+ - Public outreach and science communication
270
+ - K-12 educational programs
271
+ - Museum exhibits or media engagement
272
+ - Policy briefs or stakeholder engagement
273
+
274
+ 5. **Benefits to society**
275
+ - Economic impact or commercialization
276
+ - Health, environment, or national security benefits
277
+ - Informed decision-making
278
+ - Workforce development
279
+
280
+ **Writing Strategy for NSF Broader Impacts**:
281
+ - Be specific with concrete activities, not vague statements
282
+ - Provide timeline and milestones for broader impacts activities
283
+ - Explain how impacts will be measured and assessed
284
+ - Connect to institutional resources and existing programs
285
+ - Show commitment through preliminary efforts or partnerships
286
+ - Integrate with research plan (not tacked on)
287
+
288
+ **NIH Significance**:
289
+ - Addresses important problem or critical barrier to progress
290
+ - Improves scientific knowledge, technical capability, or clinical practice
291
+ - Potential to lead to better outcomes, interventions, or understanding
292
+ - Rigor of prior research in the field
293
+ - Alignment with NIH mission and institute priorities
294
+
295
+ For detailed guidance, refer to `@skill/references/broader_impacts.md`.
296
+
297
+ ### 5. Innovation and Transformative Potential
298
+
299
+ Articulate what is novel, creative, and paradigm-shifting about the research.
300
+
301
+ **Innovation Elements to Highlight**:
302
+ - **Conceptual Innovation**: New frameworks, models, or theories
303
+ - **Methodological Innovation**: Novel techniques, approaches, or technologies
304
+ - **Integrative Innovation**: Combining disciplines or approaches in new ways
305
+ - **Translational Innovation**: New pathways from discovery to application
306
+ - **Scale Innovation**: Unprecedented scope or resolution
307
+
308
+ **Writing Strategy**:
309
+ - Clearly state what is innovative (don't assume it's obvious)
310
+ - Explain why current approaches are insufficient
311
+ - Describe how your innovation overcomes limitations
312
+ - Provide evidence that innovation is feasible (preliminary data, proof-of-concept)
313
+ - Distinguish incremental from transformative advances
314
+ - Balance innovation with feasibility (not too risky)
315
+
316
+ **Common Mistakes**:
317
+ - Claiming novelty without demonstrating knowledge of prior work
318
+ - Confusing "new to me" with "new to the field"
319
+ - Over-promising without supporting evidence
320
+ - Being too incremental (minor variation on existing work)
321
+ - Being too speculative (no path to success)
322
+
323
+ ### 6. Research Approach and Methods
324
+
325
+ Detailed description of how the research will be conducted.
326
+
327
+ **Essential Components**:
328
+ - Overall research design and framework
329
+ - Detailed methods for each aim/objective
330
+ - Sample sizes, statistical power, and analysis plans
331
+ - Timeline and sequence of activities
332
+ - Data collection, management, and analysis
333
+ - Quality control and validation approaches
334
+ - Potential problems and alternative strategies
335
+ - Rigor and reproducibility measures
336
+
337
+ **Writing Strategy**:
338
+ - Provide enough detail for reproducibility and feasibility assessment
339
+ - Use subheadings and figures to improve organization
340
+ - Justify choice of methods and approaches
341
+ - Address potential limitations proactively
342
+ - Include preliminary data demonstrating feasibility
343
+ - Show that you've thought through the research process
344
+ - Balance detail with readability (use supplementary materials for extensive details)
345
+
346
+ **For Experimental Research**:
347
+ - Describe experimental design (controls, replicates, blinding)
348
+ - Specify materials, reagents, and equipment
349
+ - Detail data collection protocols
350
+ - Explain statistical analysis plans
351
+ - Address rigor and reproducibility
352
+
353
+ **For Computational Research**:
354
+ - Describe algorithms, models, and software
355
+ - Specify datasets and validation approaches
356
+ - Explain computational resources required
357
+ - Address code availability and documentation
358
+ - Describe benchmarking and performance metrics
359
+
360
+ **For Clinical or Translational Research**:
361
+ - Describe study population and recruitment
362
+ - Detail intervention or treatment protocols
363
+ - Explain outcome measures and assessments
364
+ - Address regulatory approvals (IRB, IND, IDE)
365
+ - Describe clinical trial design and monitoring
366
+
367
+ For discipline- and agency-specific methodology expectations, compare the draft against the relevant agency guide:
368
+ - `@skill/references/nsf_guidelines.md`
369
+ - `@skill/references/nih_guidelines.md`
370
+ - `@skill/references/doe_guidelines.md`
371
+ - `@skill/references/darpa_guidelines.md`
372
+ - `@skill/references/nstc_guidelines.md`
373
+
374
+ ### 7. Preliminary Data and Feasibility
375
+
376
+ Demonstrate that the research is achievable and the team is capable.
377
+
378
+ **Purpose**:
379
+ - Prove that the proposed approach can work
380
+ - Show that the team has necessary expertise
381
+ - Demonstrate access to required resources
382
+ - Reduce perceived risk for reviewers
383
+ - Provide foundation for proposed work
384
+
385
+ **What to Include**:
386
+ - Pilot studies or proof-of-concept results
387
+ - Method development or optimization
388
+ - Access to unique resources (samples, data, collaborators)
389
+ - Relevant publications from your team
390
+ - Preliminary models or simulations
391
+ - Feasibility assessments or power calculations
392
+
393
+ **NIH Requirements**:
394
+ - R01 applications typically require substantial preliminary data
395
+ - R21 applications may have less stringent requirements
396
+ - New investigators may have less preliminary data
397
+ - Preliminary data should directly support proposed aims
398
+
399
+ **NSF Approach**:
400
+ - Preliminary data less commonly required than NIH
401
+ - May be important for high-risk or novel approaches
402
+ - Can strengthen proposal for competitive programs
403
+
404
+ **Writing Strategy**:
405
+ - Present most compelling data that supports your approach
406
+ - Clearly connect preliminary data to proposed aims
407
+ - Acknowledge limitations and how proposed work will address them
408
+ - Use figures and data visualizations effectively
409
+ - Avoid over-interpreting or overstating preliminary findings
410
+ - Show trajectory of your research program
411
+
412
+ ### 8. Timeline, Milestones, and Management Plan
413
+
414
+ Demonstrate that the project is well-planned and achievable within the proposed timeframe.
415
+
416
+ **Essential Elements**:
417
+ - Phased timeline with clear milestones
418
+ - Logical sequence and dependencies
419
+ - Realistic timeframes for each activity
420
+ - Decision points and go/no-go criteria
421
+ - Risk mitigation strategies
422
+ - Resource allocation across time
423
+ - Coordination plan for multi-institutional teams
424
+
425
+ **Presentation Formats**:
426
+ - Gantt charts showing overlapping activities
427
+ - Year-by-year breakdown of activities
428
+ - Quarterly milestones and deliverables
429
+ - Table of aims/tasks with timeline and personnel
430
+
431
+ **Writing Strategy**:
432
+ - Be realistic about what can be accomplished
433
+ - Build in time for unexpected delays or setbacks
434
+ - Show that timeline aligns with budget and personnel
435
+ - Demonstrate understanding of regulatory timelines (IRB, IACUC)
436
+ - Include time for dissemination and broader impacts
437
+ - Address how progress will be monitored and assessed
438
+
439
+ **DARPA Emphasis**:
440
+ - Particularly important for DARPA proposals
441
+ - Clear technical milestones with measurable metrics
442
+ - Quarterly deliverables and reporting
443
+ - Phase-based structure with exit criteria
444
+ - Demonstration and transition planning
445
+
446
+ Build the timeline directly from your aims, dependencies, staffing, and review milestones, then validate the schedule against the relevant agency guide and page-limit expectations.
447
+
448
+ ### 9. Team Qualifications and Collaboration
449
+
450
+ Demonstrate that the team has the expertise, experience, and resources to succeed.
451
+
452
+ **Essential Elements**:
453
+ - PI qualifications and relevant expertise
454
+ - Co-I and collaborator roles and contributions
455
+ - Track record in the research area
456
+ - Complementary expertise across team
457
+ - Institutional support and resources
458
+ - Prior collaboration history (if applicable)
459
+ - Mentoring and training plan (for students/postdocs)
460
+
461
+ **Writing Strategy**:
462
+ - Highlight most relevant publications and accomplishments
463
+ - Clearly define roles and responsibilities
464
+ - Show that team composition is necessary (not just convenient)
465
+ - Demonstrate successful prior collaborations
466
+ - Address how team will be managed and coordinated
467
+ - Explain institutional commitment and support
468
+
469
+ **Biosketches / CVs**:
470
+ - Follow agency-specific formats (NSF, NIH, DOE, DARPA differ)
471
+ - Highlight most relevant publications and accomplishments
472
+ - Include synergistic activities and collaborations
473
+ - Show trajectory and productivity
474
+ - Address any career gaps or interruptions
475
+
476
+ **Letters of Collaboration**:
477
+ - Specific commitments and contributions
478
+ - Demonstrates genuine partnership
479
+ - Includes resource sharing or access agreements
480
+ - Signed and on letterhead
481
+
482
+ Present the team with explicit roles, concrete deliverables, and collaborator commitments; use the relevant agency guide to check whether additional institutional statements or letters are expected.
483
+
484
+ ### 10. Budget and Budget Justification
485
+
486
+ Develop realistic budgets that align with the proposed work and agency guidelines.
487
+
488
+ **Budget Categories** (typical):
489
+ - **Personnel**: Salary and fringe for PI, co-Is, postdocs, students, staff
490
+ - **Equipment**: Items >$5,000 (varies by agency)
491
+ - **Travel**: Conferences, collaborations, fieldwork
492
+ - **Materials and Supplies**: Consumables, reagents, software
493
+ - **Other Direct Costs**: Publication costs, participant incentives, consulting
494
+ - **Indirect Costs (F&A)**: Institutional overhead (rates vary)
495
+ - **Subawards**: Costs for collaborating institutions
496
+
497
+ **Agency-Specific Considerations**:
498
+
499
+ **NSF**:
500
+ - Full budget justification required
501
+ - Cost sharing generally not required (but may strengthen proposal)
502
+ - Up to 2 months summer salary for faculty
503
+ - Graduate student support encouraged
504
+
505
+ **NIH**:
506
+ - Modular budgets for ≤$250K direct costs per year (R01)
507
+ - Detailed budgets for >$250K or complex awards
508
+ - Salary cap applies (~$221,900 for 2024)
509
+ - Limited to 1 month (8.33% FTE) for most PIs
510
+
511
+ **DOE**:
512
+ - Often requires cost sharing (especially ARPA-E)
513
+ - Detailed budget with quarterly breakdown
514
+ - Requires institutional commitment letters
515
+ - National laboratory collaboration budgets separate
516
+
517
+ **DARPA**:
518
+ - Detailed budgets by phase and task
519
+ - Requires supporting cost data for large procurements
520
+ - Often requires cost-plus or firm-fixed-price structures
521
+ - Travel budget for program meetings
522
+
523
+ **Budget Justification Writing**:
524
+ - Justify each line item in terms of the research plan
525
+ - Explain effort percentages for personnel
526
+ - Describe specific equipment and why necessary
527
+ - Justify travel (conferences, collaborations)
528
+ - Explain consultant roles and rates
529
+ - Show how budget aligns with timeline
530
+
531
+ For budget detail, use `@skill/assets/budget_justification_template.md` together with the relevant agency guide.
532
+
533
+ ## Review Criteria by Agency
534
+
535
+ Understanding how proposals are evaluated is critical for writing competitive applications.
536
+
537
+ ### NSF Review Criteria
538
+
539
+ **Intellectual Merit** (primary):
540
+ - What is the potential for the proposed activity to advance knowledge?
541
+ - How well-conceived and organized is the proposed activity?
542
+ - Is there sufficient access to resources?
543
+ - How well-qualified is the individual, team, or institution to conduct proposed activities?
544
+
545
+ **Broader Impacts** (equally important):
546
+ - What is the potential for the proposed activity to benefit society?
547
+ - To what extent does the proposal address broader impacts in meaningful ways?
548
+
549
+ **Additional Considerations**:
550
+ - Integration of research and education
551
+ - Diversity and inclusion
552
+ - Results from prior NSF support (if applicable)
553
+
554
+ ### NIH Review Criteria
555
+
556
+ **Scored Criteria** (1-9 scale, 1 = exceptional, 9 = poor):
557
+
558
+ 1. **Significance**
559
+ - Addresses important problem or critical barrier
560
+ - Improves scientific knowledge, technical capability, or clinical practice
561
+ - Aligns with NIH mission
562
+
563
+ 2. **Investigator(s)**
564
+ - Well-suited to the project
565
+ - Track record of accomplishments
566
+ - Adequate training and expertise
567
+
568
+ 3. **Innovation**
569
+ - Novel concepts, approaches, methodologies, or interventions
570
+ - Challenges existing paradigms
571
+ - Addresses important problem in creative ways
572
+
573
+ 4. **Approach**
574
+ - Well-reasoned and appropriate
575
+ - Rigorous and reproducible
576
+ - Adequately accounts for potential problems
577
+ - Feasible within timeline
578
+
579
+ 5. **Environment**
580
+ - Institutional support and resources
581
+ - Scientific environment contributes to probability of success
582
+
583
+ **Additional Review Considerations** (not scored but discussed):
584
+ - Protections for human subjects
585
+ - Inclusion of women, minorities, and children
586
+ - Vertebrate animal welfare
587
+ - Biohazards
588
+ - Resubmission response (if applicable)
589
+ - Budget and timeline appropriateness
590
+
591
+ ### DOE Review Criteria
592
+
593
+ Varies by program office, but generally includes:
594
+ - Scientific and/or technical merit
595
+ - Appropriateness of proposed method or approach
596
+ - Competency of personnel and adequacy of facilities
597
+ - Reasonableness and appropriateness of budget
598
+ - Relevance to DOE mission and program goals
599
+
600
+ ### DARPA Review Criteria
601
+
602
+ **DARPA-specific considerations**:
603
+ - Overall scientific and technical merit
604
+ - Potential contribution to DARPA mission
605
+ - Realism of proposed costs and availability of funds
606
+ - Clear articulation of the program payoff if the effort succeeds
607
+ - Credible explanation of how the work differs from current practice
608
+ - Concrete statement of why the result matters for national security or transition
609
+
610
+ ### NSTC Review Criteria
611
+
612
+ **Core Evaluation Dimensions**:
613
+ 1. **Innovation (創新性)**: Novelty of concept and approach.
614
+ 2. **Feasibility (可行性)**: Methodology rigor and preliminary data.
615
+ 3. **PI Capability (主持人能力)**: Track record and expertise.
616
+ 4. **Value (價值)**: Academic contribution and societal/industrial impact.
617
+
618
+ For full review language and agency nuance, consult:
619
+ - `@skill/references/nsf_guidelines.md`
620
+ - `@skill/references/nih_guidelines.md`
621
+ - `@skill/references/doe_guidelines.md`
622
+ - `@skill/references/darpa_guidelines.md`
623
+ - `@skill/references/nstc_guidelines.md`
624
+
625
+ ## Writing Principles for Competitive Proposals
626
+
627
+ ### Clarity and Accessibility
628
+
629
+ **Write for Multiple Audiences**:
630
+ - Technical reviewers in your field (will scrutinize methods)
631
+ - Reviewers in related but not identical fields (need context)
632
+ - Program officers (look for alignment with agency goals)
633
+ - Panel members reading 15+ proposals (need clear organization)
634
+
635
+ **Strategies**:
636
+ - Use clear section headings and subheadings
637
+ - Start sections with overview paragraphs
638
+ - Define technical terms and abbreviations
639
+ - Use figures, diagrams, and tables to clarify complex ideas
640
+ - Avoid jargon when possible; explain when necessary
641
+ - Use topic sentences to guide readers
642
+
643
+ ### Persuasive Argumentation
644
+
645
+ **Build a Compelling Narrative**:
646
+ - Establish the problem and its importance
647
+ - Show gaps in current knowledge or approaches
648
+ - Present your solution as innovative and feasible
649
+ - Demonstrate that you're the right team
650
+ - Show that success will have significant impact
651
+
652
+ **Structure of Persuasion**:
653
+ 1. **Hook**: Capture attention with significance
654
+ 2. **Problem**: Establish what's not known or not working
655
+ 3. **Solution**: Present your innovative approach
656
+ 4. **Evidence**: Support with preliminary data
657
+ 5. **Impact**: Show transformative potential
658
+ 6. **Team**: Demonstrate capability to deliver
659
+
660
+ **Language Choices**:
661
+ - Use active voice for clarity and confidence
662
+ - Choose strong verbs (investigate, elucidate, discover vs. look at, study)
663
+ - Be confident but not arrogant (avoid "obviously," "clearly")
664
+ - Acknowledge uncertainty appropriately
665
+ - Use precise language (avoid vague terms like "several," "various")
666
+
667
+ ### Visual Communication
668
+
669
+ **Effective Use of Figures**:
670
+ - Conceptual diagrams showing research framework
671
+ - Preliminary data demonstrating feasibility
672
+ - Timelines and Gantt charts
673
+ - Workflow diagrams showing methodology
674
+ - Expected results or predictions
675
+
676
+ **Design Principles**:
677
+ - Make figures self-explanatory with complete captions
678
+ - Use consistent color schemes and fonts
679
+ - Ensure readability (large enough fonts, clear labels)
680
+ - Integrate figures with text (refer to specific figures)
681
+ - Follow agency-specific formatting requirements
682
+
683
+ ### Addressing Risk and Feasibility
684
+
685
+ **Balance Innovation and Risk**:
686
+ - Acknowledge potential challenges
687
+ - Provide alternative approaches
688
+ - Show preliminary data reducing risk
689
+ - Demonstrate expertise to handle challenges
690
+ - Include contingency plans
691
+
692
+ **Common Concerns**:
693
+ - Too ambitious for timeline/budget
694
+ - Technically infeasible
695
+ - Team lacks necessary expertise
696
+ - Preliminary data insufficient
697
+ - Methods not adequately described
698
+ - Lack of innovation or significance
699
+
700
+ ### Integration and Coherence
701
+
702
+ **Ensure All Parts Align**:
703
+ - Budget supports activities in project description
704
+ - Timeline matches aims and milestones
705
+ - Team composition matches required expertise
706
+ - Broader impacts connect to research plan
707
+ - Letters of support confirm stated collaborations
708
+
709
+ **Avoid Contradictions**:
710
+ - Preliminary data vs. stated gaps
711
+ - Claimed expertise vs. publication record
712
+ - Stated aims vs. actual methods
713
+ - Budget vs. stated activities
714
+
715
+ ## Common Proposal Types
716
+
717
+ ### NSF Proposal Types
718
+
719
+ - **Standard Research Proposals**: Most common, up to $500K and 5 years
720
+ - **CAREER Awards**: Early career faculty, integrated research/education, $400-500K over 5 years
721
+ - **Collaborative Research**: Multiple institutions, separately submitted, shared research plan
722
+ - **RAPID**: Urgent research opportunities, up to $200K, no preliminary data required
723
+ - **EAGER**: High-risk, high-reward exploratory research, up to $300K
724
+ - **EArly-concept Grants for Exploratory Research (EAGER)**: Early-stage exploratory work
725
+
726
+ ### NIH Award Mechanisms
727
+
728
+ - **R01**: Research Project Grant, $250K+ per year, 3-5 years, most common
729
+ - **R21**: Exploratory/Developmental Research, up to $275K over 2 years, no preliminary data
730
+ - **R03**: Small Grant Program, up to $100K over 2 years
731
+ - **R15**: Academic Research Enhancement Awards (AREA), for primarily undergraduate institutions
732
+ - **R35**: MIRA (Maximizing Investigators' Research Award), program-specific
733
+ - **P01**: Program Project Grant, multi-project integrated research
734
+ - **U01**: Research Project Cooperative Agreement, NIH involvement in conduct
735
+
736
+ **Fellowship Mechanisms**:
737
+ - **F30**: Predoctoral MD/PhD Fellowship
738
+ - **F31**: Predoctoral Fellowship
739
+ - **F32**: Postdoctoral Fellowship
740
+ - **K99/R00**: Pathway to Independence Award
741
+ - **K08**: Mentored Clinical Scientist Research Career Development Award
742
+
743
+ ### DOE Programs
744
+
745
+ - **Office of Science**: Basic research in physical sciences, biological sciences, computing
746
+ - **ARPA-E**: Transformative energy technologies, requires cost sharing
747
+ - **EERE**: Applied research in renewable energy and energy efficiency
748
+ - **National Laboratories**: Collaborative research with DOE labs
749
+
750
+ ### DARPA Programs
751
+
752
+ - **Varies by Office**: BTO, DSO, I2O, MTO, STO, TTO
753
+ - **Program-Specific BAAs**: Broad Agency Announcements for specific thrusts
754
+ - **Young Faculty Award (YFA)**: Early career researchers, up to $500K
755
+ - **Director's Fellowship**: High-risk, paradigm-shifting research
756
+
757
+ For mechanism-specific scope, page limits, and program fit, consult the relevant agency guide rather than a generic cross-agency summary.
758
+
759
+ ## Resubmission Strategies
760
+
761
+ ### NIH Resubmission (A1)
762
+
763
+ **Introduction to Resubmission** (1 page):
764
+ - Summarize major criticisms from previous review
765
+ - Describe specific changes made in response
766
+ - Use bullet points for clarity
767
+ - Be respectful of reviewers' comments
768
+ - Highlight substantial improvements
769
+
770
+ **Strategies**:
771
+ - Address every major criticism
772
+ - Make changes visible (but don't use track changes in final)
773
+ - Strengthen weak areas (preliminary data, methods, significance)
774
+ - Consider changing aims if fundamentally flawed
775
+ - Get external feedback before resubmitting
776
+ - Use full 37-month window if needed for new data
777
+
778
+ **When Not to Resubmit**:
779
+ - Fundamental conceptual flaws
780
+ - Lack of innovation or significance
781
+ - Missing key expertise or resources
782
+ - Extensive revisions needed (consider new submission)
783
+
784
+ ### NSF Resubmission
785
+
786
+ **NSF allows resubmission after revision**:
787
+ - Address reviewer concerns in revised proposal
788
+ - No formal "introduction to resubmission" section
789
+ - May be reviewed by same or different panel
790
+ - Consider program officer feedback
791
+ - May need to wait for next submission cycle
792
+
793
+ For resubmissions, anchor the revision plan in the actual reviewer summary statement and the target agency's current instructions; the NIH and NSF guidance in this skill are the primary references.
794
+
795
+ ## Common Mistakes to Avoid
796
+
797
+ ### Conceptual Mistakes
798
+
799
+ 1. **Failing to Address Review Criteria**: Not explicitly discussing significance, innovation, approach, etc.
800
+ 2. **Mismatch with Agency Mission**: Proposing research that doesn't align with agency goals
801
+ 3. **Unclear Significance**: Failing to articulate why the research matters
802
+ 4. **Insufficient Innovation**: Incremental work presented as transformative
803
+ 5. **Vague Objectives**: Goals that are not specific or measurable
804
+
805
+ ### Writing Mistakes
806
+
807
+ 1. **Poor Organization**: Lack of clear structure and flow
808
+ 2. **Excessive Jargon**: Inaccessible to broader review panel
809
+ 3. **Verbosity**: Unnecessarily complex or wordy writing
810
+ 4. **Missing Context**: Assuming reviewers know your field deeply
811
+ 5. **Inconsistent Terminology**: Using different terms for same concept
812
+
813
+ ### Technical Mistakes
814
+
815
+ 1. **Inadequate Methods**: Insufficient detail to judge feasibility
816
+ 2. **Overly Ambitious**: Too much proposed for timeline/budget
817
+ 3. **No Preliminary Data**: For mechanisms requiring demonstrated feasibility
818
+ 4. **Poor Timeline**: Unrealistic or poorly justified schedule
819
+ 5. **Misaligned Budget**: Budget doesn't support proposed activities
820
+
821
+ ### Formatting Mistakes
822
+
823
+ 1. **Exceeding Page Limits**: Automatic rejection
824
+ 2. **Wrong Font or Margins**: Non-compliant formatting
825
+ 3. **Missing Required Sections**: Incomplete application
826
+ 4. **Poor Figure Quality**: Illegible or unprofessional figures
827
+ 5. **Inconsistent Citations**: Formatting errors in references
828
+
829
+ ### Strategic Mistakes
830
+
831
+ 1. **Wrong Program or Mechanism**: Proposing to inappropriate opportunity
832
+ 2. **Weak Team**: Insufficient expertise or missing key collaborators
833
+ 3. **No Broader Impacts**: For NSF, failing to adequately address
834
+ 4. **Ignoring Program Priorities**: Not aligning with current emphasis areas
835
+ 5. **Late Submission**: Technical issues or rushed preparation
836
+
837
+ ## Workflow for Grant Development
838
+
839
+ ### Phase 1: Planning and Preparation (2-6 months before deadline)
840
+
841
+ **Activities**:
842
+ - Identify appropriate funding opportunities
843
+ - Review program announcements and requirements
844
+ - Consult with program officers (if appropriate)
845
+ - Assemble team and confirm collaborations
846
+ - Develop preliminary data (if needed)
847
+ - Outline research plan and specific aims
848
+ - Review successful proposals (if available)
849
+
850
+ **Outputs**:
851
+ - Selected funding opportunity
852
+ - Assembled team with defined roles
853
+ - Preliminary outline of specific aims
854
+ - Gap analysis of needed preliminary data
855
+
856
+ ### Phase 2: Drafting (2-3 months before deadline)
857
+
858
+ **Activities**:
859
+ - Write specific aims or objectives (start here!)
860
+ - Develop project description/research strategy
861
+ - Create figures and data visualizations
862
+ - Draft timeline and milestones
863
+ - Prepare preliminary budget
864
+ - Write broader impacts or significance sections
865
+ - Request letters of support/collaboration
866
+
867
+ **Outputs**:
868
+ - Complete first draft of narrative sections
869
+ - Preliminary budget with justification
870
+ - Timeline and management plan
871
+ - Requested letters from collaborators
872
+
873
+ ### Phase 3: Internal Review (1-2 months before deadline)
874
+
875
+ **Activities**:
876
+ - Circulate draft to co-investigators
877
+ - Seek feedback from colleagues and mentors
878
+ - Request institutional review (if required)
879
+ - Mock review session (if possible)
880
+ - Revise based on feedback
881
+ - Refine budget and budget justification
882
+
883
+ **Outputs**:
884
+ - Revised draft incorporating feedback
885
+ - Refined budget aligned with revised plan
886
+ - Identified weaknesses and mitigation strategies
887
+
888
+ ### Phase 4: Finalization (2-4 weeks before deadline)
889
+
890
+ **Activities**:
891
+ - Final revisions to narrative
892
+ - Prepare all required forms and documents
893
+ - Finalize budget and budget justification
894
+ - Compile biosketches, CVs, and current & pending
895
+ - Collect letters of support
896
+ - Prepare data management plan (if required)
897
+ - Write project summary/abstract
898
+ - Proofread all materials
899
+
900
+ **Outputs**:
901
+ - Complete, polished proposal
902
+ - All required supplementary documents
903
+ - Formatted according to agency requirements
904
+
905
+ ### Phase 5: Submission (1 week before deadline)
906
+
907
+ **Activities**:
908
+ - Institutional review and approval
909
+ - Upload to submission portal
910
+ - Verify all documents and formatting
911
+ - Submit 24-48 hours before deadline
912
+ - Confirm successful submission
913
+ - Receive confirmation and proposal number
914
+
915
+ **Outputs**:
916
+ - Submitted proposal
917
+ - Submission confirmation
918
+ - Archived copy of all materials
919
+
920
+ **Critical Tip**: Never wait until the deadline. Portals crash, files corrupt, and emergencies happen. Aim for 48 hours early.
921
+
922
+ ## Integration with Other Skills
923
+
924
+ This skill works effectively with:
925
+ - **Scientific Writing**: For clear, compelling prose
926
+ - **Literature Review**: For comprehensive background sections
927
+ - **Peer Review**: For self-assessment before submission
928
+ - **Research Lookup**: For finding relevant citations and prior work
929
+ - **Data Visualization**: For creating effective figures
930
+
931
+ ## Resources
932
+
933
+ This skill includes comprehensive reference files covering specific aspects of grant writing:
934
+
935
+ - `@skill/references/README.md`: Index of the grant-writing reference pack
936
+ - `@skill/references/nsf_guidelines.md`: NSF-specific requirements, formatting, and strategy
937
+ - `@skill/references/nih_guidelines.md`: NIH mechanisms, review criteria, and submission structure
938
+ - `@skill/references/doe_guidelines.md`: DOE programs, emphasis areas, and application procedures
939
+ - `@skill/references/darpa_guidelines.md`: DARPA BAAs, program framing, and proposal strategy
940
+ - `@skill/references/nstc_guidelines.md`: NSTC proposal structure and review emphasis
941
+ - `@skill/references/broader_impacts.md`: Strategies for compelling NSF broader impacts
942
+ - `@skill/references/specific_aims_guide.md`: Writing effective NIH specific aims pages
943
+
944
+ Load these references as needed when working on specific aspects of grant writing.
945
+
946
+ ## Templates and Assets
947
+
948
+ - `@skill/assets/nsf_project_summary_template.md`: NSF project summary structure
949
+ - `@skill/assets/nih_specific_aims_template.md`: NIH specific aims page template
950
+ - `@skill/assets/budget_justification_template.md`: Budget justification structure
951
+
952
+ ## Scripts and Tools
953
+
954
+ This skill currently ships with reference documents and templates, but no bundled automation scripts. For figures and timelines, load `scientific-schematics` and generate the diagram there.
955
+
956
+ ---
957
+
958
+ **Final Note**: Grant writing is both an art and a science. Success requires not only excellent research ideas but also clear communication, strategic positioning, and meticulous attention to detail. Start early, seek feedback, and remember that even the best researchers face rejection—persistence and revision are key to funding success.