quantum-spherifier 1.0.0

package/research/hypotheses/quantum_algorithms/doc_6dbdd005/manifest.json

@@ -0,0 +1,143 @@
+{
+  "id": "doc_6dbdd005",
+  "version": "1.0",
+  "title": "Cat-qubit Bacon-Shor logical qubits with biased-noise protection, combined with QPE for molecular en",
+  "category": "hypotheses",
+  "topic": "quantum_algorithms",
+  "researchLine": "quantum_algorithms",
+  "tags": [
+    "algorithms",
+    "cross_linked",
+    "intermediate_result"
+  ],
+  "references": [
+    "qec_bacon_shor",
+    "qubit_cat",
+    "algo_qpe"
+  ],
+  "crossLinks": [
+    {
+      "id": "doc_005f1a09",
+      "shared": 3,
+      "relationship": "builds_on"
+    },
+    {
+      "id": "doc_05f0ed46",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_0b51b472",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_32b3ea58",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_54035ce1",
+      "shared": 1,
+      "relationship": "related"
+    }
+  ],
+  "patent": {
+    "eligible": false,
+    "claims": []
+  },
+  "createdAt": 1783513294713,
+  "updatedAt": 1783513294713,
+  "extra": {
+    "hypothesis": {
+      "statement": "Cat-qubit Bacon-Shor logical qubits with biased-noise protection, combined with QPE for molecular energy estimation, reduce the T-gate factory footprint by 4x-x, enabling FeMoco-scale chemistry on a 100000-physical-qubit processor — a coherent integration of QEC, qubit-modality, and algorithm advances.",
+      "rationale": "Synthesised by combining the qec_bacon_shor + qubit_cat + algo_qpe pattern within research line \"quantum_algorithms\" (cross-linking with \"molecular_simulation\"). The hypothesis is anchored to 3 knowledge-graph concepts to ensure no advance stays isolated.",
+      "supportingConcepts": [
+        "qec_bacon_shor",
+        "qubit_cat",
+        "algo_qpe"
+      ],
+      "predictedImpact": {
+        "metric": "factory_footprint",
+        "direction": "decrease",
+        "magnitude": "4x"
+      },
+      "parameters": {
+        "physicalQubits": 100000,
+        "logicalQubits": 3000,
+        "modality": "cat_bosonic",
+        "algorithm": "QPE",
+        "researchLine": "quantum_algorithms"
+      },
+      "feasibility": {
+        "tier": "long_term",
+        "confidence": 0.51,
+        "anchors": [],
+        "ruleResults": [
+          {
+            "tier": "mid_term",
+            "reason": "100000 physical qubits is 5-8 years from current 1K-scale"
+          },
+          {
+            "tier": "long_term",
+            "reason": "3000 logical qubits requires 2035+ fault-tolerant scale"
+          }
+        ],
+        "gaps": [
+          "Kilo-to-mega-qubit scale-up: requires new cryogenic wiring (cryo-CMOS) and calibration automation",
+          "Code distance must increase to ≥5 for multiple logical qubits with useful error rates"
+        ],
+        "costEstimate": {
+          "low": 5000000000,
+          "high": 50000000000,
+          "currency": "USD",
+          "note": "Order-of-magnitude estimate; refine with bottom-up EPC + cryogenics + control electronics analysis."
+        },
+        "timelineEstimate": "10-20 years",
+        "resourceProfile": {
+          "physicalQubits": 100000,
+          "logicalQubits": 3000,
+          "codeDistance": null,
+          "tgateCount": null,
+          "modality": "cat_bosonic",
+          "cryoRequired": false,
+          "operatingTemp": "10-20mK (dilution refrigerator)"
+        },
+        "crossLinks": {
+          "linkedConcepts": 3,
+          "totalConcepts": 3,
+          "sufficient": true,
+          "note": "Solution is cross-linked to the quantum knowledge graph."
+        },
+        "patentEligible": false
+      },
+      "patentabilityHint": "MAYBE",
+      "proposedExperiments": [
+        "Resource-estimate the algorithm at target precision: count T-gates, logical qubits, and magic-state factories.",
+        "Classically simulate a reduced version (8-16 qubits) to verify correctness and benchmark against classical alternatives.",
+        "Profile the circuit depth against expected hardware cycle times to confirm runtime feasibility."
+      ],
+      "source": "template",
+      "templatePattern": [
+        "qec_bacon_shor",
+        "qubit_cat",
+        "algo_qpe"
+      ],
+      "id": "hyp_c9acba16",
+      "researchLine": "quantum_algorithms",
+      "crossLink": true,
+      "pairedLine": "molecular_simulation",
+      "createdAt": 1783513294601,
+      "seedTopic": "qubit_nv_center"
+    },
+    "routing": {
+      "line": "quantum_algorithms",
+      "crossLink": true,
+      "pairedLine": "molecular_simulation",
+      "seedTopic": "algo_qsvt"
+    }
+  },
+  "files": {
+    "markdown": "main.md"
+  }
+}

package/research/hypotheses/quantum_algorithms/doc_b862fc72/main.md

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+# Fluxonium qubits with T1 = 1000 ms extend the effective circuit depth for NISQ-era VQE on transition-metal catalysts by 
+
+**ID:** hyp_38b55d85
+**Research Line:** quantum_algorithms (cross-linking with molecular_simulation)
+**Source:** template
+**Created:** 2026-07-08T12:16:32.840Z
+
+## Research Line: Quantum Algorithms
+
+Discover and optimize algorithms with provable or practical quantum advantage on near-term and fault-tolerant hardware.
+
+## Statement
+
+Fluxonium qubits with T1 = 1000 ms extend the effective circuit depth for NISQ-era VQE on transition-metal catalysts by 10x-x, while a QSVT-structured ansatz reduces gate count by 5-x — together enabling catalyst screening beyond classical DFT accuracy.
+
+## Rationale
+
+Synthesised by combining the algo_qsvt + qubit_fluxonium + sim_transition_metal pattern within research line "quantum_algorithms" (cross-linking with "molecular_simulation"). The hypothesis is anchored to 3 knowledge-graph concepts to ensure no advance stays isolated.
+
+## Supporting Concepts (Cross-Links)
+
+> quantum-spherifier principle: every hypothesis must cross-link to the KG — nothing stays isolated.
+
+- algo_qsvt
+- qubit_fluxonium
+- sim_transition_metal
+
+## Predicted Impact
+
+Metric: **effective_circuit_depth** — increase by 10x
+
+## Feasibility Assessment
+
+Tier: **mid_term** (confidence 0.51)
+
+### Resource Anchors
+
+
+### Identified Gaps
+
+
+### Resource Profile
+
+Physical qubits: 200
+Logical qubits: —
+Code distance: —
+Modality: fluxonium
+Operating temp: 10-20mK (dilution refrigerator)
+
+### Cross-Link Verification
+
+✓ Solution is cross-linked to 3 KG concept(s).
+
+## Proposed Experiments
+
+- Resource-estimate the algorithm at target precision: count T-gates, logical qubits, and magic-state factories.
+- Classically simulate a reduced version (8-16 qubits) to verify correctness and benchmark against classical alternatives.
+- Profile the circuit depth against expected hardware cycle times to confirm runtime feasibility.
+
+## Candidate Patent Claims
+

package/research/hypotheses/quantum_algorithms/doc_b862fc72/manifest.json

@@ -0,0 +1,140 @@
+{
+  "id": "doc_b862fc72",
+  "version": "1.0",
+  "title": "Fluxonium qubits with T1 = 1000 ms extend the effective circuit depth for NISQ-era VQE on transition",
+  "category": "hypotheses",
+  "topic": "quantum_algorithms",
+  "researchLine": "quantum_algorithms",
+  "tags": [
+    "algorithms",
+    "cross_linked",
+    "intermediate_result"
+  ],
+  "references": [
+    "algo_qsvt",
+    "qubit_fluxonium",
+    "sim_transition_metal"
+  ],
+  "crossLinks": [
+    {
+      "id": "doc_0894efe7",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_1f409f63",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_22744a09",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_273d88b1",
+      "shared": 3,
+      "relationship": "builds_on"
+    },
+    {
+      "id": "doc_3630eed6",
+      "shared": 1,
+      "relationship": "related"
+    }
+  ],
+  "patent": {
+    "eligible": false,
+    "claims": []
+  },
+  "createdAt": 1783512992900,
+  "updatedAt": 1783512992900,
+  "extra": {
+    "hypothesis": {
+      "statement": "Fluxonium qubits with T1 = 1000 ms extend the effective circuit depth for NISQ-era VQE on transition-metal catalysts by 10x-x, while a QSVT-structured ansatz reduces gate count by 5-x — together enabling catalyst screening beyond classical DFT accuracy.",
+      "rationale": "Synthesised by combining the algo_qsvt + qubit_fluxonium + sim_transition_metal pattern within research line \"quantum_algorithms\" (cross-linking with \"molecular_simulation\"). The hypothesis is anchored to 3 knowledge-graph concepts to ensure no advance stays isolated.",
+      "supportingConcepts": [
+        "algo_qsvt",
+        "qubit_fluxonium",
+        "sim_transition_metal"
+      ],
+      "predictedImpact": {
+        "metric": "effective_circuit_depth",
+        "direction": "increase",
+        "magnitude": "10x"
+      },
+      "parameters": {
+        "physicalQubits": 200,
+        "modality": "fluxonium",
+        "algorithm": "VQE_QSVT_ansatz",
+        "T1_s": 1,
+        "researchLine": "quantum_algorithms"
+      },
+      "feasibility": {
+        "tier": "mid_term",
+        "confidence": 0.51,
+        "anchors": [],
+        "ruleResults": [
+          {
+            "tier": "current",
+            "reason": "200 physical qubits demonstrated (IBM Condor 1121, Atom 1180)"
+          },
+          {
+            "tier": "current",
+            "reason": "T1=1000.0ms within superconducting / neutral atom range"
+          }
+        ],
+        "gaps": [],
+        "costEstimate": {
+          "low": 500000000,
+          "high": 5000000000,
+          "currency": "USD",
+          "note": "Order-of-magnitude estimate; refine with bottom-up EPC + cryogenics + control electronics analysis."
+        },
+        "timelineEstimate": "5-10 years",
+        "resourceProfile": {
+          "physicalQubits": 200,
+          "logicalQubits": null,
+          "codeDistance": null,
+          "tgateCount": null,
+          "modality": "fluxonium",
+          "cryoRequired": false,
+          "operatingTemp": "10-20mK (dilution refrigerator)"
+        },
+        "crossLinks": {
+          "linkedConcepts": 3,
+          "totalConcepts": 3,
+          "sufficient": true,
+          "note": "Solution is cross-linked to the quantum knowledge graph."
+        },
+        "patentEligible": false
+      },
+      "patentabilityHint": "MAYBE",
+      "proposedExperiments": [
+        "Resource-estimate the algorithm at target precision: count T-gates, logical qubits, and magic-state factories.",
+        "Classically simulate a reduced version (8-16 qubits) to verify correctness and benchmark against classical alternatives.",
+        "Profile the circuit depth against expected hardware cycle times to confirm runtime feasibility."
+      ],
+      "source": "template",
+      "templatePattern": [
+        "algo_qsvt",
+        "qubit_fluxonium",
+        "sim_transition_metal"
+      ],
+      "id": "hyp_38b55d85",
+      "researchLine": "quantum_algorithms",
+      "crossLink": true,
+      "pairedLine": "molecular_simulation",
+      "createdAt": 1783512992840,
+      "seedTopic": "qubit_nv_center"
+    },
+    "routing": {
+      "line": "quantum_algorithms",
+      "crossLink": true,
+      "pairedLine": "molecular_simulation",
+      "seedTopic": "algo_qsvt"
+    }
+  },
+  "files": {
+    "markdown": "main.md"
+  }
+}

package/research/hypotheses/quantum_algorithms/doc_cdf33ced/main.md

@@ -0,0 +1,63 @@
+# Cat-qubit Bacon-Shor logical qubits with biased-noise protection, combined with QPE for molecular energy estimation, red
+
+**ID:** hyp_3d0110c4
+**Research Line:** quantum_algorithms (cross-linking with molecular_simulation)
+**Source:** template
+**Created:** 2026-07-08T12:25:43.111Z
+
+## Research Line: Quantum Algorithms
+
+Discover and optimize algorithms with provable or practical quantum advantage on near-term and fault-tolerant hardware.
+
+## Statement
+
+Cat-qubit Bacon-Shor logical qubits with biased-noise protection, combined with QPE for molecular energy estimation, reduce the T-gate factory footprint by 4x-x, enabling FeMoco-scale chemistry on a 100000-physical-qubit processor — a coherent integration of QEC, qubit-modality, and algorithm advances.
+
+## Rationale
+
+Synthesised by combining the qec_bacon_shor + qubit_cat + algo_qpe pattern within research line "quantum_algorithms" (cross-linking with "molecular_simulation"). The hypothesis is anchored to 3 knowledge-graph concepts to ensure no advance stays isolated.
+
+## Supporting Concepts (Cross-Links)
+
+> quantum-spherifier principle: every hypothesis must cross-link to the KG — nothing stays isolated.
+
+- qec_bacon_shor
+- qubit_cat
+- algo_qpe
+
+## Predicted Impact
+
+Metric: **factory_footprint** — decrease by 4x
+
+## Feasibility Assessment
+
+Tier: **long_term** (confidence 0.51)
+
+### Resource Anchors
+
+
+### Identified Gaps
+
+- Kilo-to-mega-qubit scale-up: requires new cryogenic wiring (cryo-CMOS) and calibration automation
+- Code distance must increase to ≥5 for multiple logical qubits with useful error rates
+
+### Resource Profile
+
+Physical qubits: 100000
+Logical qubits: 3000
+Code distance: —
+Modality: cat_bosonic
+Operating temp: 10-20mK (dilution refrigerator)
+
+### Cross-Link Verification
+
+✓ Solution is cross-linked to 3 KG concept(s).
+
+## Proposed Experiments
+
+- Resource-estimate the algorithm at target precision: count T-gates, logical qubits, and magic-state factories.
+- Classically simulate a reduced version (8-16 qubits) to verify correctness and benchmark against classical alternatives.
+- Profile the circuit depth against expected hardware cycle times to confirm runtime feasibility.
+
+## Candidate Patent Claims
+

package/research/hypotheses/quantum_algorithms/doc_cdf33ced/manifest.json

@@ -0,0 +1,143 @@
+{
+  "id": "doc_cdf33ced",
+  "version": "1.0",
+  "title": "Cat-qubit Bacon-Shor logical qubits with biased-noise protection, combined with QPE for molecular en",
+  "category": "hypotheses",
+  "topic": "quantum_algorithms",
+  "researchLine": "quantum_algorithms",
+  "tags": [
+    "algorithms",
+    "cross_linked",
+    "intermediate_result"
+  ],
+  "references": [
+    "qec_bacon_shor",
+    "qubit_cat",
+    "algo_qpe"
+  ],
+  "crossLinks": [
+    {
+      "id": "doc_005f1a09",
+      "shared": 3,
+      "relationship": "builds_on"
+    },
+    {
+      "id": "doc_05f0ed46",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_0b51b472",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_14edc7a7",
+      "shared": 1,
+      "relationship": "related"
+    },
+    {
+      "id": "doc_27b9d2bc",
+      "shared": 1,
+      "relationship": "related"
+    }
+  ],
+  "patent": {
+    "eligible": false,
+    "claims": []
+  },
+  "createdAt": 1783513543201,
+  "updatedAt": 1783513543201,
+  "extra": {
+    "hypothesis": {
+      "statement": "Cat-qubit Bacon-Shor logical qubits with biased-noise protection, combined with QPE for molecular energy estimation, reduce the T-gate factory footprint by 4x-x, enabling FeMoco-scale chemistry on a 100000-physical-qubit processor — a coherent integration of QEC, qubit-modality, and algorithm advances.",
+      "rationale": "Synthesised by combining the qec_bacon_shor + qubit_cat + algo_qpe pattern within research line \"quantum_algorithms\" (cross-linking with \"molecular_simulation\"). The hypothesis is anchored to 3 knowledge-graph concepts to ensure no advance stays isolated.",
+      "supportingConcepts": [
+        "qec_bacon_shor",
+        "qubit_cat",
+        "algo_qpe"
+      ],
+      "predictedImpact": {
+        "metric": "factory_footprint",
+        "direction": "decrease",
+        "magnitude": "4x"
+      },
+      "parameters": {
+        "physicalQubits": 100000,
+        "logicalQubits": 3000,
+        "modality": "cat_bosonic",
+        "algorithm": "QPE",
+        "researchLine": "quantum_algorithms"
+      },
+      "feasibility": {
+        "tier": "long_term",
+        "confidence": 0.51,
+        "anchors": [],
+        "ruleResults": [
+          {
+            "tier": "mid_term",
+            "reason": "100000 physical qubits is 5-8 years from current 1K-scale"
+          },
+          {
+            "tier": "long_term",
+            "reason": "3000 logical qubits requires 2035+ fault-tolerant scale"
+          }
+        ],
+        "gaps": [
+          "Kilo-to-mega-qubit scale-up: requires new cryogenic wiring (cryo-CMOS) and calibration automation",
+          "Code distance must increase to ≥5 for multiple logical qubits with useful error rates"
+        ],
+        "costEstimate": {
+          "low": 5000000000,
+          "high": 50000000000,
+          "currency": "USD",
+          "note": "Order-of-magnitude estimate; refine with bottom-up EPC + cryogenics + control electronics analysis."
+        },
+        "timelineEstimate": "10-20 years",
+        "resourceProfile": {
+          "physicalQubits": 100000,
+          "logicalQubits": 3000,
+          "codeDistance": null,
+          "tgateCount": null,
+          "modality": "cat_bosonic",
+          "cryoRequired": false,
+          "operatingTemp": "10-20mK (dilution refrigerator)"
+        },
+        "crossLinks": {
+          "linkedConcepts": 3,
+          "totalConcepts": 3,
+          "sufficient": true,
+          "note": "Solution is cross-linked to the quantum knowledge graph."
+        },
+        "patentEligible": false
+      },
+      "patentabilityHint": "MAYBE",
+      "proposedExperiments": [
+        "Resource-estimate the algorithm at target precision: count T-gates, logical qubits, and magic-state factories.",
+        "Classically simulate a reduced version (8-16 qubits) to verify correctness and benchmark against classical alternatives.",
+        "Profile the circuit depth against expected hardware cycle times to confirm runtime feasibility."
+      ],
+      "source": "template",
+      "templatePattern": [
+        "qec_bacon_shor",
+        "qubit_cat",
+        "algo_qpe"
+      ],
+      "id": "hyp_3d0110c4",
+      "researchLine": "quantum_algorithms",
+      "crossLink": true,
+      "pairedLine": "molecular_simulation",
+      "createdAt": 1783513543111,
+      "seedTopic": "qubit_nv_center"
+    },
+    "routing": {
+      "line": "quantum_algorithms",
+      "crossLink": true,
+      "pairedLine": "molecular_simulation",
+      "seedTopic": "algo_qsvt"
+    }
+  },
+  "files": {
+    "markdown": "main.md"
+  }
+}

package/research/hypotheses/quantum_error_correction/doc_3986910a/main.md

@@ -0,0 +1,61 @@
+# Fluxonium qubits with T1 = 1000 ms extend the effective circuit depth for NISQ-era VQE on transition-metal catalysts by 
+
+**ID:** hyp_189a77a7
+**Research Line:** quantum_error_correction (cross-linking with molecular_simulation)
+**Source:** template
+**Created:** 2026-07-08T12:05:45.175Z
+
+## Research Line: Quantum Error Correction
+
+Build fault-tolerant logical qubits by suppressing physical errors below threshold and reducing overhead.
+
+## Statement
+
+Fluxonium qubits with T1 = 1000 ms extend the effective circuit depth for NISQ-era VQE on transition-metal catalysts by 10x-x, while a QSVT-structured ansatz reduces gate count by 5-x — together enabling catalyst screening beyond classical DFT accuracy.
+
+## Rationale
+
+Synthesised by combining the algo_qsvt + qubit_fluxonium + sim_transition_metal pattern within research line "quantum_error_correction" (cross-linking with "molecular_simulation"). The hypothesis is anchored to 3 knowledge-graph concepts to ensure no advance stays isolated.
+
+## Supporting Concepts (Cross-Links)
+
+> quantum-spherifier principle: every hypothesis must cross-link to the KG — nothing stays isolated.
+
+- algo_qsvt
+- qubit_fluxonium
+- sim_transition_metal
+
+## Predicted Impact
+
+Metric: **effective_circuit_depth** — increase by 10x
+
+## Feasibility Assessment
+
+Tier: **mid_term** (confidence 0.51)
+
+### Resource Anchors
+
+
+### Identified Gaps
+
+
+### Resource Profile
+
+Physical qubits: 200
+Logical qubits: —
+Code distance: —
+Modality: fluxonium
+Operating temp: 10-20mK (dilution refrigerator)
+
+### Cross-Link Verification
+
+✓ Solution is cross-linked to 3 KG concept(s).
+
+## Proposed Experiments
+
+- Implement a distance-7 code on a fluxonium processor and measure the logical error rate over 10000 cycles.
+- Simulate the decoder (MWPM or neural) under realistic circuit-level noise to verify threshold crossing.
+- Benchmark syndrome extraction latency against the coherence budget to ensure real-time decoding feasibility.
+
+## Candidate Patent Claims
+