pulseed 0.5.3 → 0.6.0

package/dist/platform/soil/sqlite-repository-storage.js

@@ -0,0 +1,278 @@
+import { randomUUID } from "node:crypto";
+import { SOIL_SCHEMA_SQL } from "./ddl.js";
+import { SoilEmbeddingSchema, SoilMutationSchema, SoilPageMemberSchema, } from "./contracts.js";
+import { encodeEmbedding, parseJsonArray, parseReindexRecordIds, serializeJson, unique, } from "./sqlite-repository-helpers.js";
+export function initializeSoilSqlite(db) {
+    db.pragma("journal_mode = WAL");
+    db.pragma("foreign_keys = ON");
+    db.exec(SOIL_SCHEMA_SQL);
+}
+export function initializeReadonlySoilSqlite(db) {
+    db.pragma("query_only = ON");
+}
+export function applySoilMutation(db, input) {
+    const mutation = SoilMutationSchema.parse(input);
+    const contentMutatedRecordIds = new Set();
+    const embeddedChunkIds = new Set();
+    const embeddedRecordIds = new Set();
+    const tx = db.transaction(() => {
+        for (const record of mutation.records) {
+            if (record.is_active) {
+                db
+                    .prepare("UPDATE soil_records SET is_active = 0 WHERE record_key = ? AND record_id != ? AND is_active = 1")
+                    .run(record.record_key, record.record_id);
+            }
+            db.prepare(`
+        INSERT INTO soil_records (
+          record_id, record_key, version, record_type, soil_id, title, summary, canonical_text,
+          goal_id, task_id, status, confidence, importance, source_reliability,
+          valid_from, valid_to, supersedes_record_id, is_active, source_type, source_id,
+          metadata_json, created_at, updated_at
+        ) VALUES (
+          @record_id, @record_key, @version, @record_type, @soil_id, @title, @summary, @canonical_text,
+          @goal_id, @task_id, @status, @confidence, @importance, @source_reliability,
+          @valid_from, @valid_to, @supersedes_record_id, @is_active, @source_type, @source_id,
+          @metadata_json, @created_at, @updated_at
+        )
+        ON CONFLICT(record_id) DO UPDATE SET
+          record_key = excluded.record_key,
+          version = excluded.version,
+          record_type = excluded.record_type,
+          soil_id = excluded.soil_id,
+          title = excluded.title,
+          summary = excluded.summary,
+          canonical_text = excluded.canonical_text,
+          goal_id = excluded.goal_id,
+          task_id = excluded.task_id,
+          status = excluded.status,
+          confidence = excluded.confidence,
+          importance = excluded.importance,
+          source_reliability = excluded.source_reliability,
+          valid_from = excluded.valid_from,
+          valid_to = excluded.valid_to,
+          supersedes_record_id = excluded.supersedes_record_id,
+          is_active = excluded.is_active,
+          source_type = excluded.source_type,
+          source_id = excluded.source_id,
+          metadata_json = excluded.metadata_json,
+          created_at = excluded.created_at,
+          updated_at = excluded.updated_at
+      `).run({
+                ...record,
+                is_active: record.is_active ? 1 : 0,
+                metadata_json: serializeJson(record.metadata_json),
+            });
+            contentMutatedRecordIds.add(record.record_id);
+        }
+        for (const chunk of mutation.chunks) {
+            db.prepare(`
+        INSERT INTO soil_chunks (
+          chunk_id, record_id, soil_id, chunk_index, chunk_kind, heading_path_json,
+          chunk_text, token_count, checksum, created_at
+        ) VALUES (
+          @chunk_id, @record_id, @soil_id, @chunk_index, @chunk_kind, @heading_path_json,
+          @chunk_text, @token_count, @checksum, @created_at
+        )
+        ON CONFLICT(chunk_id) DO UPDATE SET
+          record_id = excluded.record_id,
+          soil_id = excluded.soil_id,
+          chunk_index = excluded.chunk_index,
+          chunk_kind = excluded.chunk_kind,
+          heading_path_json = excluded.heading_path_json,
+          chunk_text = excluded.chunk_text,
+          token_count = excluded.token_count,
+          checksum = excluded.checksum,
+          created_at = excluded.created_at
+      `).run({
+                ...chunk,
+                heading_path_json: serializeJson(chunk.heading_path_json),
+            });
+            contentMutatedRecordIds.add(chunk.record_id);
+        }
+        for (const page of mutation.pages) {
+            db.prepare(`
+        INSERT INTO soil_pages (
+          page_id, soil_id, relative_path, route, kind, status, markdown, checksum, projected_at
+        ) VALUES (
+          @page_id, @soil_id, @relative_path, @route, @kind, @status, @markdown, @checksum, @projected_at
+        )
+        ON CONFLICT(page_id) DO UPDATE SET
+          soil_id = excluded.soil_id,
+          relative_path = excluded.relative_path,
+          route = excluded.route,
+          kind = excluded.kind,
+          status = excluded.status,
+          markdown = excluded.markdown,
+          checksum = excluded.checksum,
+          projected_at = excluded.projected_at
+      `).run(page);
+        }
+        for (const member of mutation.page_members) {
+            db.prepare(`
+        INSERT INTO soil_page_members (page_id, record_id, ordinal, role, confidence)
+        VALUES (@page_id, @record_id, @ordinal, @role, @confidence)
+        ON CONFLICT(page_id, record_id, role) DO UPDATE SET
+          ordinal = excluded.ordinal,
+          confidence = excluded.confidence
+      `).run(member);
+        }
+        for (const embedding of mutation.embeddings) {
+            const parsed = SoilEmbeddingSchema.parse(embedding);
+            db.prepare(`
+        INSERT INTO soil_embeddings (
+          chunk_id, model, embedding_version, encoding, embedding, embedded_at
+        ) VALUES (
+          @chunk_id, @model, @embedding_version, @encoding, @embedding, @embedded_at
+        )
+        ON CONFLICT(chunk_id, model, embedding_version) DO UPDATE SET
+          encoding = excluded.encoding,
+          embedding = excluded.embedding,
+          embedded_at = excluded.embedded_at
+      `).run({
+                chunk_id: parsed.chunk_id,
+                model: parsed.model,
+                embedding_version: parsed.embedding_version,
+                encoding: parsed.encoding,
+                embedding: encodeEmbedding(parsed),
+                embedded_at: parsed.embedded_at,
+            });
+            const chunk = db
+                .prepare("SELECT record_id FROM soil_chunks WHERE chunk_id = ?")
+                .get(parsed.chunk_id);
+            if (chunk) {
+                embeddedChunkIds.add(parsed.chunk_id);
+                embeddedRecordIds.add(chunk.record_id);
+            }
+        }
+        for (const edge of mutation.edges) {
+            db.prepare(`
+        INSERT INTO soil_edges (src_record_id, edge_type, dst_record_id, confidence)
+        VALUES (@src_record_id, @edge_type, @dst_record_id, @confidence)
+        ON CONFLICT(src_record_id, edge_type, dst_record_id) DO UPDATE SET
+          confidence = excluded.confidence
+      `).run(edge);
+        }
+        for (const tombstone of mutation.tombstones) {
+            db.prepare(`
+        INSERT INTO soil_tombstones (tombstone_id, record_id, record_key, version, reason, deleted_at)
+        VALUES (?, ?, ?, ?, ?, ?)
+      `).run(randomUUID(), tombstone.record_id, tombstone.record_key, tombstone.version, tombstone.reason, tombstone.deleted_at);
+            if (tombstone.record_id) {
+                db
+                    .prepare("UPDATE soil_records SET is_active = 0 WHERE record_id = ?")
+                    .run(tombstone.record_id);
+                contentMutatedRecordIds.add(tombstone.record_id);
+            }
+            if (tombstone.record_key) {
+                db
+                    .prepare("UPDATE soil_records SET is_active = 0 WHERE record_key = ?")
+                    .run(tombstone.record_key);
+                const rows = db
+                    .prepare("SELECT record_id FROM soil_records WHERE record_key = ?")
+                    .all(tombstone.record_key);
+                for (const row of rows) {
+                    contentMutatedRecordIds.add(row.record_id);
+                }
+            }
+        }
+        syncSoilFts(db, unique([...contentMutatedRecordIds]));
+        const fullyEmbeddedRecordIds = new Set(unique([...embeddedRecordIds]).filter((recordId) => recordHasCompleteEmbeddingMutation(db, recordId, embeddedChunkIds)));
+        completeOpenEmbeddingJobs(db, fullyEmbeddedRecordIds);
+        if (contentMutatedRecordIds.size > 0) {
+            const openEmbeddingRecordIds = new Set(loadOpenEmbeddingReindexRecordIds(db));
+            const insertJob = db.prepare(`
+        INSERT INTO soil_reindex_jobs (
+          job_id, scope, reason, status, payload_json, created_at
+        ) VALUES (?, ?, ?, ?, ?, ?)
+      `);
+            for (const recordId of unique([...contentMutatedRecordIds]).filter((id) => !fullyEmbeddedRecordIds.has(id) && !openEmbeddingRecordIds.has(id))) {
+                insertJob.run(randomUUID(), "embedding", "content mutation invalidated embeddings", "pending", JSON.stringify({ record_ids: [recordId] }), new Date().toISOString());
+            }
+        }
+    });
+    tx();
+}
+export function replaceSoilPageMembers(db, pageId, members) {
+    const parsed = members.map((member) => SoilPageMemberSchema.parse({ ...member, page_id: pageId }));
+    const tx = db.transaction(() => {
+        db.prepare("DELETE FROM soil_page_members WHERE page_id = ?").run(pageId);
+        for (const member of parsed) {
+            db.prepare(`
+        INSERT INTO soil_page_members (page_id, record_id, ordinal, role, confidence)
+        VALUES (@page_id, @record_id, @ordinal, @role, @confidence)
+      `).run(member);
+        }
+    });
+    tx();
+}
+export function loadOpenEmbeddingReindexRecordIds(db) {
+    const rows = db.prepare(`
+    SELECT payload_json
+    FROM soil_reindex_jobs
+    WHERE scope = 'embedding'
+      AND status IN ('pending', 'running')
+  `).all();
+    const recordIds = [];
+    for (const row of rows) {
+        recordIds.push(...parseReindexRecordIds(row.payload_json));
+    }
+    return unique(recordIds);
+}
+function recordHasCompleteEmbeddingMutation(db, recordId, embeddedChunkIds) {
+    const chunks = db
+        .prepare("SELECT chunk_id FROM soil_chunks WHERE record_id = ?")
+        .all(recordId);
+    return chunks.length > 0 && chunks.every((chunk) => embeddedChunkIds.has(chunk.chunk_id));
+}
+function completeOpenEmbeddingJobs(db, recordIds) {
+    if (recordIds.size === 0)
+        return;
+    const jobs = db.prepare(`
+    SELECT job_id, payload_json
+    FROM soil_reindex_jobs
+    WHERE scope = 'embedding'
+      AND status IN ('pending', 'running')
+  `).all();
+    const complete = db.prepare("UPDATE soil_reindex_jobs SET status = 'completed', completed_at = ? WHERE job_id = ?");
+    const completedAt = new Date().toISOString();
+    for (const job of jobs) {
+        const jobRecordIds = parseReindexRecordIds(job.payload_json);
+        if (jobRecordIds.length > 0 && jobRecordIds.every((recordId) => recordIds.has(recordId))) {
+            complete.run(completedAt, job.job_id);
+        }
+    }
+}
+function syncSoilFts(db, recordIds) {
+    if (recordIds.length === 0)
+        return;
+    db.prepare(`DELETE FROM soil_chunk_fts WHERE record_id IN (${recordIds.map(() => "?").join(", ")})`).run(...recordIds);
+    const rows = db.prepare(`
+    SELECT
+      sc.chunk_id,
+      sc.record_id,
+      sc.soil_id,
+      (
+        SELECT spm.page_id
+        FROM soil_page_members spm
+        WHERE spm.record_id = r.record_id
+        ORDER BY CASE WHEN spm.role = 'primary' THEN 0 ELSE 1 END, spm.ordinal, spm.page_id
+        LIMIT 1
+      ) AS page_id,
+      r.title AS title_context,
+      COALESCE(r.summary, '') AS summary_context,
+      sc.heading_path_json,
+      sc.chunk_text
+    FROM soil_chunks sc
+    JOIN soil_records r ON r.record_id = sc.record_id
+    WHERE sc.record_id IN (${recordIds.map(() => "?").join(", ")})
+  `).all(...recordIds);
+    const insert = db.prepare(`
+    INSERT INTO soil_chunk_fts (
+      chunk_id, record_id, soil_id, page_id, title_context, summary_context, heading_context, chunk_text
+    ) VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+  `);
+    for (const row of rows) {
+        insert.run(row.chunk_id, row.record_id, row.soil_id, row.page_id, row.title_context, row.summary_context, parseJsonArray(row.heading_path_json).join(" / "), row.chunk_text);
+    }
+}
+//# sourceMappingURL=sqlite-repository-storage.js.map

package/dist/platform/soil/sqlite-repository-storage.js.map

@@ -0,0 +1 @@
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package/dist/platform/soil/sqlite-repository.d.ts

@@ -5,6 +5,7 @@ export declare class SqliteSoilRepository implements SoilRepository {
     readonly dbPath: string;
     private constructor();
     static create(configInput?: SoilConfigInput): Promise<SqliteSoilRepository>;
+    static openExisting(configInput?: SoilConfigInput): Promise<SqliteSoilRepository | null>;
     close(): void;
     applyMutation(input: SoilMutationInput): Promise<void>;
     loadRecords(input?: SoilRecordFilterInput): Promise<SoilRecord[]>;
@@ -15,11 +16,7 @@ export declare class SqliteSoilRepository implements SoilRepository {
     searchHybrid(input: SoilSearchRequestInput): Promise<SoilCandidate[]>;
     searchLexical(input: SoilSearchRequestInput): Promise<SoilCandidate[]>;
     searchDense(input: SoilSearchRequestInput): Promise<SoilCandidate[]>;
-    private recordHasCompleteEmbeddingMutation;
-    private completeOpenEmbeddingJobs;
-    private loadOpenEmbeddingReindexRecordIds;
     loadPagesForRecords(recordIds: string[]): Promise<Map<string, SoilPage[]>>;
     loadPageMembers(pageIds: string[]): Promise<SoilPageMember[]>;
-    private syncFts;
 }
 //# sourceMappingURL=sqlite-repository.d.ts.map

package/dist/platform/soil/sqlite-repository.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"sqlite-repository.d.ts","sourceRoot":"","sources":["../../../src/platform/soil/sqlite-repository.ts"],"names":[],"mappings":"AAIA,OAAO,EAAqD,KAAK,eAAe,EAAE,MAAM,aAAa,CAAC;AACtG,OAAO,EAGL,KAAK,aAAa,EAClB,KAAK,iBAAiB,EACtB,KAAK,QAAQ,EACb,KAAK,cAAc,EACnB,KAAK,UAAU,EACf,KAAK,qBAAqB,EAC1B,KAAK,cAAc,EACnB,KAAK,sBAAsB,EAC3B,KAAK,gBAAgB,EACtB,MAAM,gBAAgB,CAAC;AAiBxB,qBAAa,oBAAqB,YAAW,cAAc;IAEvD,OAAO,CAAC,QAAQ,CAAC,EAAE;IACnB,QAAQ,CAAC,MAAM,EAAE,MAAM;IAFzB,OAAO;WAKM,MAAM,CAAC,WAAW,GAAE,eAAoB,GAAG,OAAO,CAAC,oBAAoB,CAAC;WASxE,YAAY,CAAC,WAAW,GAAE,eAAoB,GAAG,OAAO,CAAC,oBAAoB,GAAG,IAAI,CAAC;IAalG,KAAK,IAAI,IAAI;IAIP,aAAa,CAAC,KAAK,EAAE,iBAAiB,GAAG,OAAO,CAAC,IAAI,CAAC;IAItD,WAAW,CAAC,KAAK,GAAE,qBAA0B,GAAG,OAAO,CAAC,UAAU,EAAE,CAAC;IAgBrE,YAAY,CAAC,SAAS,EAAE,MAAM,EAAE,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAiBhE,WAAW,CAAC,KAAK,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IAI7C,kBAAkB,CAAC,MAAM,EAAE,MAAM,EAAE,OAAO,EAAE,cAAc,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC;IAI5E,YAAY,CAAC,KAAK,EAAE,sBAAsB,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAItE,YAAY,CAAC,KAAK,EAAE,sBAAsB,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;IA0BrE,aAAa,CAAC,KAAK,EAAE,sBAAsB,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;IAItE,WAAW,CAAC,KAAK,EAAE,sBAAsB,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;IAIpE,mBAAmB,CAAC,SAAS,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,CAAC,CAAC;IAmB1E,eAAe,CAAC,OAAO,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,cAAc,EAAE,CAAC;CAYpE"}