pulseed 0.5.3 → 0.6.0

package/dist/tools/mutation/TaskCreateTool/TaskCreateTool.d.ts

@@ -71,15 +71,15 @@ export declare const TaskCreateInputSchema: z.ZodObject<{
     reversibility: "unknown" | "reversible" | "irreversible";
     task_category: "normal" | "knowledge_acquisition" | "verification" | "observation" | "capability_acquisition";
     goalId: string;
-    primaryDimension: string;
     targetDimensions: string[];
+    primaryDimension: string;
     intended_direction?: "increase" | "decrease" | "neutral" | undefined;
     strategyId?: string | null | undefined;
 }, {
     work_description: string;
     goalId: string;
-    primaryDimension: string;
     targetDimensions: string[];
+    primaryDimension: string;
     constraints?: string[] | undefined;
     rationale?: string | undefined;
     approach?: string | undefined;
@@ -176,15 +176,15 @@ export declare class TaskCreateTool implements ITool<TaskCreateInput, unknown> {
         reversibility: "unknown" | "reversible" | "irreversible";
         task_category: "normal" | "knowledge_acquisition" | "verification" | "observation" | "capability_acquisition";
         goalId: string;
-        primaryDimension: string;
         targetDimensions: string[];
+        primaryDimension: string;
         intended_direction?: "increase" | "decrease" | "neutral" | undefined;
         strategyId?: string | null | undefined;
     }, {
         work_description: string;
         goalId: string;
-        primaryDimension: string;
         targetDimensions: string[];
+        primaryDimension: string;
         constraints?: string[] | undefined;
         rationale?: string | undefined;
         approach?: string | undefined;

package/dist/tools/network/McpStdioTool/McpStdioTool.d.ts

@@ -30,16 +30,16 @@ export declare const McpCallToolInputSchema: z.ZodObject<{
     tool_name: z.ZodString;
     arguments: z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
 }, "strip", z.ZodTypeAny, {
+    tool_name: string;
     command: string;
     timeoutMs: number;
     args: string[];
     arguments: Record<string, unknown>;
-    tool_name: string;
     cwd?: string | undefined;
     env?: Record<string, string> | undefined;
 }, {
-    command: string;
     tool_name: string;
+    command: string;
     cwd?: string | undefined;
     timeoutMs?: number | undefined;
     env?: Record<string, string> | undefined;
@@ -85,16 +85,16 @@ export declare class McpCallToolTool implements ITool<McpCallToolInput, unknown>
         tool_name: z.ZodString;
         arguments: z.ZodDefault<z.ZodRecord<z.ZodString, z.ZodUnknown>>;
     }, "strip", z.ZodTypeAny, {
+        tool_name: string;
         command: string;
         timeoutMs: number;
         args: string[];
         arguments: Record<string, unknown>;
-        tool_name: string;
         cwd?: string | undefined;
         env?: Record<string, string> | undefined;
     }, {
-        command: string;
         tool_name: string;
+        command: string;
         cwd?: string | undefined;
         timeoutMs?: number | undefined;
         env?: Record<string, string> | undefined;

package/dist/tools/query/CodeSearchRepairTool/CodeSearchRepairTool.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"CodeSearchRepairTool.d.ts","sourceRoot":"","sources":["../../../../src/tools/query/CodeSearchRepairTool/CodeSearchRepairTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAIxB,OAAO,KAAK,EAAE,KAAK,EAAE,qBAAqB,EAAE,eAAe,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAK9G,eAAO,MAAM,2BAA2B;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EActC,CAAC;AACH,MAAM,MAAM,qBAAqB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,2BAA2B,CAAC,CAAC;AAEhF,qBAAa,oBAAqB,YAAW,KAAK,CAAC,qBAAqB,EAAE,OAAO,CAAC;IAChF,QAAQ,CAAC,QAAQ,EAAE,YAAY,CAW7B;IACF,QAAQ,CAAC,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;OAA+B;IAEnD,WAAW,IAAI,MAAM;IAIf,IAAI,CAAC,KAAK,EAAE,qBAAqB,EAAE,OAAO,EAAE,eAAe,GAAG,OAAO,CAAC,UAAU,CAAC;IAyDjF,gBAAgB,CAAC,KAAK,EAAE,qBAAqB,EAAE,OAAO,CAAC,EAAE,eAAe,GAAG,OAAO,CAAC,qBAAqB,CAAC;IAe/G,iBAAiB,IAAI,OAAO;CAG7B"}

package/dist/tools/query/CodeSearchRepairTool/CodeSearchRepairTool.js

@@ -2,6 +2,7 @@ import { z } from "zod";
 import { SearchOrchestrator } from "../../../platform/code-search/orchestrator.js";
 import { parseVerificationSignal } from "../../../platform/code-search/verification-retrieval.js";
 import { validateFilePath } from "../../fs/FileValidationTool/FileValidationTool.js";
+import { resolveCodeSearchRoot } from "../code-search-root.js";
 import { MAX_OUTPUT_CHARS, PERMISSION_LEVEL, READ_ONLY, TAGS } from "./constants.js";
 import { DESCRIPTION } from "./prompt.js";
 export const CodeSearchRepairInputSchema = z.object({
@@ -38,7 +39,19 @@ export class CodeSearchRepairTool {
     }
     async call(input, context) {
         const startTime = Date.now();
-        const cwd = input.path ? validateFilePath(input.path, context.cwd).resolved : context.cwd;
+        let cwd;
+        try {
+            cwd = resolveCodeSearchRoot(input, context, "code_search_repair");
+        }
+        catch (err) {
+            return {
+                success: false,
+                data: { candidates: [], focusedTestSuggestions: [], warnings: [err.message] },
+                summary: `Repair code search failed: ${err.message}`,
+                error: err.message,
+                durationMs: Date.now() - startTime,
+            };
+        }
         const signal = parseVerificationSignal(input.verificationOutput);
         const orchestrator = new SearchOrchestrator(cwd);
         const prior = {
@@ -82,7 +95,15 @@ export class CodeSearchRepairTool {
         };
     }
     async checkPermissions(input, context) {
-        if (!context || !input.path)
+        if (!context)
+            return { status: "allowed" };
+        try {
+            resolveCodeSearchRoot(input, context, "code_search_repair");
+        }
+        catch (err) {
+            return { status: "denied", reason: err.message };
+        }
+        if (!input.path)
             return { status: "allowed" };
         const validation = validateFilePath(input.path, context.cwd, context.executionPolicy?.protectedPaths);
         if (!validation.valid) {

package/dist/tools/query/CodeSearchRepairTool/CodeSearchRepairTool.js.map

@@ -1 +1 @@
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+{"version":3,"file":"CodeSearchRepairTool.js","sourceRoot":"","sources":["../../../../src/tools/query/CodeSearchRepairTool/CodeSearchRepairTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,kBAAkB,EAAE,MAAM,+CAA+C,CAAC;AACnF,OAAO,EAAE,uBAAuB,EAAE,MAAM,yDAAyD,CAAC;AAClG,OAAO,EAAE,gBAAgB,EAAE,MAAM,mDAAmD,CAAC;AAErF,OAAO,EAAE,qBAAqB,EAAE,MAAM,wBAAwB,CAAC;AAC/D,OAAO,EAAE,gBAAgB,EAAE,gBAAgB,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACrF,OAAO,EAAE,WAAW,EAAE,MAAM,aAAa,CAAC;AAE1C,MAAM,CAAC,MAAM,2BAA2B,GAAG,CAAC,CAAC,MAAM,CAAC;IAClD,SAAS,EAAE,CAAC,CAAC,MAAM,CAAC;QAClB,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;QACvB,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,QAAQ,EAAE,cAAc,EAAE,kBAAkB,EAAE,UAAU,EAAE,SAAS,EAAE,YAAY,EAAE,YAAY,EAAE,iBAAiB,EAAE,SAAS,CAAC,CAAC,CAAC,QAAQ,EAAE;QAC1J,UAAU,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,EAAE;QAC1C,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QACjC,SAAS,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,EAAE;QACzC,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;KACpC,CAAC;IACF,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACnC,kBAAkB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC;IACrC,YAAY,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,EAAE;IAC5C,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;IACpC,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;CAC5B,CAAC,CAAC;AAGH,MAAM,OAAO,oBAAoB;IACtB,QAAQ,GAAiB;QAChC,IAAI,EAAE,oBAAoB;QAC1B,OAAO,EAAE,CAAC,oBAAoB,EAAE,oBAAoB,CAAC;QACrD,eAAe,EAAE,gBAAgB;QACjC,UAAU,EAAE,SAAS;QACrB,aAAa,EAAE,KAAK;QACpB,WAAW,EAAE,KAAK;QAClB,UAAU,EAAE,IAAI;QAChB,cAAc,EAAE,CAAC;QACjB,cAAc,EAAE,gBAAgB;QAChC,IAAI,EAAE,CAAC,GAAG,IAAI,CAAC;KAChB,CAAC;IACO,WAAW,GAAG,2BAA2B,CAAC;IAEnD,WAAW;QACT,OAAO,WAAW,CAAC;IACrB,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,KAA4B,EAAE,OAAwB;QAC/D,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAC7B,IAAI,GAAW,CAAC;QAChB,IAAI,CAAC;YACH,GAAG,GAAG,qBAAqB,CAAC,KAAK,EAAE,OAAO,EAAE,oBAAoB,CAAC,CAAC;QACpE,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO;gBACL,OAAO,EAAE,KAAK;gBACd,IAAI,EAAE,EAAE,UAAU,EAAE,EAAE,EAAE,sBAAsB,EAAE,EAAE,EAAE,QAAQ,EAAE,CAAE,GAAa,CAAC,OAAO,CAAC,EAAE;gBACxF,OAAO,EAAE,8BAA+B,GAAa,CAAC,OAAO,EAAE;gBAC/D,KAAK,EAAG,GAAa,CAAC,OAAO;gBAC7B,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;aACnC,CAAC;QACJ,CAAC;QACD,MAAM,MAAM,GAAG,uBAAuB,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC;QACjE,MAAM,YAAY,GAAG,IAAI,kBAAkB,CAAC,GAAG,CAAC,CAAC;QACjD,MAAM,KAAK,GAAG;YACZ,OAAO,EAAE,KAAK,CAAC,YAAY,IAAI,eAAe;YAC9C,IAAI,EAAE,EAAE,GAAG,KAAK,CAAC,SAAS,EAAE,GAAG,EAAE;YACjC,UAAU,EAAE,EAAE;YACd,KAAK,EAAE;gBACL,OAAO,EAAE,KAAK,CAAC,YAAY,IAAI,eAAe;gBAC9C,IAAI,EAAE,KAAK,CAAC,SAAS,CAAC,IAAI;gBAC1B,MAAM,EAAE,KAAK,CAAC,SAAS,CAAC,MAAM,IAAI,SAAS;gBAC3C,cAAc,EAAE,EAAE;gBAClB,6BAA6B,EAAE,EAAE;gBACjC,eAAe,EAAE,EAAE;gBACnB,kBAAkB,EAAE,EAAE;gBACtB,cAAc,EAAE,EAAE;gBAClB,iBAAiB,EAAE,EAAE;gBACrB,OAAO,EAAE,EAAE;gBACX,QAAQ,EAAE,EAAE;gBACZ,aAAa,EAAE,EAAE;gBACjB,UAAU,EAAE,EAAE;gBACd,mBAAmB,EAAE,CAAC,MAAM,CAAC;gBAC7B,WAAW,EAAE,EAAE;aAChB;SACF,CAAC;QACF,MAAM,UAAU,GAAG,MAAM,YAAY,CAAC,sBAAsB,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;QAC5E,OAAO;YACL,OAAO,EAAE,IAAI;YACb,IAAI,EAAE;gBACJ,MAAM;gBACN,aAAa,EAAE,KAAK,CAAC,aAAa;gBAClC,YAAY,EAAE,KAAK,CAAC,YAAY,IAAI,EAAE;gBACtC,UAAU;gBACV,sBAAsB,EAAE,UAAU;qBAC/B,MAAM,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,IAAI,SAAS,CAAC,MAAM,EAAE,IAAI,KAAK,MAAM,CAAC;qBAC3F,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC;qBACX,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC;aACtC;YACD,OAAO,EAAE,6BAA6B,MAAM,CAAC,IAAI,iBAAiB,UAAU,CAAC,MAAM,aAAa;YAChG,UAAU,EAAE,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS;YAClC,SAAS,EAAE,UAAU,CAAC,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,SAAS,CAAC,IAAI,CAAC;SACzD,CAAC;IACJ,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,KAA4B,EAAE,OAAyB;QAC5E,IAAI,CAAC,OAAO;YAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;QAC3C,IAAI,CAAC;YACH,qBAAqB,CAAC,KAAK,EAAE,OAAO,EAAE,oBAAoB,CAAC,CAAC;QAC9D,CAAC;QAAC,OAAO,GAAG,EAAE,CAAC;YACb,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAG,GAAa,CAAC,OAAO,EAAE,CAAC;QAC9D,CAAC;QACD,IAAI,CAAC,KAAK,CAAC,IAAI;YAAE,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;QAC9C,MAAM,UAAU,GAAG,gBAAgB,CAAC,KAAK,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,EAAE,OAAO,CAAC,eAAe,EAAE,cAAc,CAAC,CAAC;QACtG,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,CAAC;YACtB,OAAO,EAAE,MAAM,EAAE,gBAAgB,EAAE,MAAM,EAAE,4CAA4C,UAAU,CAAC,QAAQ,EAAE,EAAE,CAAC;QACjH,CAAC;QACD,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,CAAC;IAC/B,CAAC;IAED,iBAAiB;QACf,OAAO,IAAI,CAAC;IACd,CAAC;CACF"}

package/dist/tools/query/CodeSearchTool/CodeSearchTool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"CodeSearchTool.d.ts","sourceRoot":"","sources":["../../../../src/tools/query/CodeSearchTool/CodeSearchTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAKxB,OAAO,KAAK,EAAE,KAAK,EAAE,qBAAqB,EAAE,eAAe,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAI9G,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAehC,CAAC;AACH,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,qBAAqB,CAAC,CAAC;AAoBpE,qBAAa,cAAe,YAAW,KAAK,CAAC,eAAe,EAAE,OAAO,CAAC;IACpE,QAAQ,CAAC,QAAQ,EAAE,YAAY,CAW7B;IACF,QAAQ,CAAC,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;OAAyB;IAE7C,WAAW,IAAI,MAAM;IAIf,IAAI,CAAC,KAAK,EAAE,eAAe,EAAE,OAAO,EAAE,eAAe,GAAG,OAAO,CAAC,UAAU,CAAC;IA0B3E,gBAAgB,CAAC,KAAK,EAAE,eAAe,EAAE,OAAO,CAAC,EAAE,eAAe,GAAG,OAAO,CAAC,qBAAqB,CAAC;IASzG,iBAAiB,IAAI,OAAO;CAG7B"}
+{"version":3,"file":"CodeSearchTool.d.ts","sourceRoot":"","sources":["../../../../src/tools/query/CodeSearchTool/CodeSearchTool.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAKxB,OAAO,KAAK,EAAE,KAAK,EAAE,qBAAqB,EAAE,eAAe,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM,gBAAgB,CAAC;AAK9G,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAehC,CAAC;AACH,MAAM,MAAM,eAAe,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,qBAAqB,CAAC,CAAC;AAoBpE,qBAAa,cAAe,YAAW,KAAK,CAAC,eAAe,EAAE,OAAO,CAAC;IACpE,QAAQ,CAAC,QAAQ,EAAE,YAAY,CAW7B;IACF,QAAQ,CAAC,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;OAAyB;IAE7C,WAAW,IAAI,MAAM;IAIf,IAAI,CAAC,KAAK,EAAE,eAAe,EAAE,OAAO,EAAE,eAAe,GAAG,OAAO,CAAC,UAAU,CAAC;IAqC3E,gBAAgB,CAAC,KAAK,EAAE,eAAe,EAAE,OAAO,CAAC,EAAE,eAAe,GAAG,OAAO,CAAC,qBAAqB,CAAC;IAiBzG,iBAAiB,IAAI,OAAO;CAG7B"}

package/dist/tools/query/CodeSearchTool/CodeSearchTool.js

@@ -2,6 +2,7 @@ import { z } from "zod";
 import { SearchOrchestrator } from "../../../platform/code-search/orchestrator.js";
 import { saveCodeSearchSession } from "../../../platform/code-search/session-store.js";
 import { validateFilePath } from "../../fs/FileValidationTool/FileValidationTool.js";
+import { resolveCodeSearchRoot } from "../code-search-root.js";
 import { MAX_OUTPUT_CHARS, PERMISSION_LEVEL, READ_ONLY, TAGS } from "./constants.js";
 import { DESCRIPTION } from "./prompt.js";
 export const CodeSearchInputSchema = z.object({
@@ -56,7 +57,19 @@ export class CodeSearchTool {
     }
     async call(input, context) {
         const startTime = Date.now();
-        const cwd = input.path ? validateFilePath(input.path, context.cwd).resolved : context.cwd;
+        let cwd;
+        try {
+            cwd = resolveCodeSearchRoot(input, context, "code_search");
+        }
+        catch (err) {
+            return {
+                success: false,
+                data: { candidates: [], candidateIds: [], totalCandidates: 0, warnings: [err.message] },
+                summary: `Code search failed: ${err.message}`,
+                error: err.message,
+                durationMs: Date.now() - startTime,
+            };
+        }
         const orchestrator = new SearchOrchestrator(cwd);
         const session = await orchestrator.searchWithState({ ...input, cwd });
         saveCodeSearchSession(session, cwd);
@@ -80,8 +93,17 @@ export class CodeSearchTool {
         };
     }
     async checkPermissions(input, context) {
-        if (!context || !input.path)
+        if (!context)
+            return { status: "allowed" };
+        try {
+            resolveCodeSearchRoot(input, context, "code_search");
+        }
+        catch (err) {
+            return { status: "denied", reason: err.message };
+        }
+        if (!input.path) {
             return { status: "allowed" };
+        }
         const validation = validateFilePath(input.path, context.cwd, context.executionPolicy?.protectedPaths);
         if (!validation.valid) {
             return { status: "needs_approval", reason: `Searching outside the working directory: ${validation.resolved}` };

package/dist/tools/query/CodeSearchTool/CodeSearchTool.js.map

@@ -1 +1 @@
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package/dist/tools/query/MemoryRecallTool/MemoryRecallTool.d.ts

@@ -21,8 +21,8 @@ export declare const MemoryRecallInputSchema: z.ZodObject<{
 }, {
     query: string;
     exact?: boolean | undefined;
-    category?: string | undefined;
     mode?: "semantic" | "keyword" | undefined;
+    category?: string | undefined;
     limit?: number | undefined;
     memory_type?: "observation" | "fact" | "procedure" | "preference" | undefined;
     include_archived?: boolean | undefined;
@@ -54,8 +54,8 @@ export declare class MemoryRecallTool implements ITool<MemoryRecallInput, Memory
     }, {
         query: string;
         exact?: boolean | undefined;
-        category?: string | undefined;
         mode?: "semantic" | "keyword" | undefined;
+        category?: string | undefined;
         limit?: number | undefined;
         memory_type?: "observation" | "fact" | "procedure" | "preference" | undefined;
         include_archived?: boolean | undefined;

package/dist/tools/query/SoilQueryTool/SoilQueryTool.d.ts.map

@@ -1 +1 @@
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package/dist/tools/query/SoilQueryTool/SoilQueryTool.js

@@ -1,3 +1,5 @@
+import * as os from "node:os";
+import * as path from "node:path";
 import { z } from "zod";
 import { SoilRetriever, checkSoilIndexFresh, createSoilConfig, loadSoilIndexSnapshot, querySoilIndexSnapshot, SqliteSoilRepository, } from "../../../platform/soil/index.js";
 import { DESCRIPTION } from "./prompt.js";
@@ -134,6 +136,32 @@ function dedupeByKey(records, keyFn) {
     }
     return deduped;
 }
+function isUnsafeBroadRoot(rootDir) {
+    const resolved = path.resolve(rootDir);
+    const homeDir = path.resolve(os.homedir());
+    const homeParent = path.dirname(homeDir);
+    const filesystemRoot = path.parse(homeDir).root;
+    return resolved === filesystemRoot || resolved === homeParent || resolved === homeDir;
+}
+function resolveSoilQueryRoot(input, warnings) {
+    const defaultRoot = createSoilConfig().rootDir;
+    if (!input.rootDir) {
+        return defaultRoot;
+    }
+    const requestedRoot = path.resolve(input.rootDir);
+    if (!isUnsafeBroadRoot(requestedRoot)) {
+        return requestedRoot;
+    }
+    warnings.push(`Ignored unsafe Soil rootDir "${requestedRoot}"; using default Soil root "${defaultRoot}".`);
+    return defaultRoot;
+}
+function appendScanWarnings(warnings, scan) {
+    if (!scan?.truncated) {
+        return;
+    }
+    const reason = scan.reason ?? "scan_limit";
+    warnings.push(`Soil manifest scan stopped early (${reason}; matched ${scan.matchedFiles}/${scan.maxFiles} Markdown files, scanned ${scan.scannedDirs} dirs).`);
+}
 export class SoilQueryTool {
     queryEmbedding;
     constructor(options = {}) {
@@ -164,32 +192,34 @@ export class SoilQueryTool {
         const startTime = Date.now();
         try {
             const parsedInput = this.inputSchema.parse(input);
-            const retriever = SoilRetriever.create({ rootDir: parsedInput.rootDir });
-            const config = createSoilConfig({ rootDir: parsedInput.rootDir });
+            const warnings = [];
+            const effectiveRootDir = resolveSoilQueryRoot(parsedInput, warnings);
+            const effectiveInput = { ...parsedInput, rootDir: effectiveRootDir };
+            const retriever = SoilRetriever.create({ rootDir: effectiveRootDir });
+            const config = createSoilConfig({ rootDir: effectiveRootDir });
             const pages = [];
             const hits = [];
             let retrievalSource = "manifest";
-            const warnings = [];
             if (parsedInput.soil_id || parsedInput.path) {
-                const directRecords = await this.lookupDirectRecords(retriever, parsedInput);
+                const directRecords = await this.lookupDirectRecords(retriever, effectiveInput);
                 for (const record of directRecords) {
                     pages.push(toDirectItem(record));
                 }
             }
             if (parsedInput.query) {
-                const sqliteResult = await this.querySqlite(parsedInput);
+                const sqliteResult = await this.querySqlite(effectiveInput);
                 warnings.push(...sqliteResult.warnings);
                 if (sqliteResult.hits.length > 0) {
                     retrievalSource = "sqlite";
                     hits.push(...sqliteResult.hits);
                 }
-                const indexSnapshot = hits.length === 0 ? await loadSoilIndexSnapshot({ rootDir: parsedInput.rootDir }) : null;
+                const indexSnapshot = hits.length === 0 ? await loadSoilIndexSnapshot({ rootDir: effectiveRootDir }) : null;
                 const freshness = indexSnapshot
-                    ? await checkSoilIndexFresh({ rootDir: parsedInput.rootDir })
+                    ? await checkSoilIndexFresh({ rootDir: effectiveRootDir })
                     : null;
                 if (hits.length === 0 && indexSnapshot && freshness?.fresh) {
                     retrievalSource = "index";
-                    const queried = await querySoilIndexSnapshot(parsedInput.query, parsedInput.limit, { rootDir: parsedInput.rootDir });
+                    const queried = await querySoilIndexSnapshot(parsedInput.query, parsedInput.limit, { rootDir: effectiveRootDir });
                     for (const hit of queried) {
                         hits.push(toIndexHitItem(hit));
                     }
@@ -210,6 +240,7 @@ export class SoilQueryTool {
                     pages.push(toSummaryItem(record));
                 }
             }
+            appendScanWarnings(warnings, retriever.getLastScanStats());
             const dedupedPages = dedupeByKey(pages, (record) => `${record.soilId}:${record.relativePath}`);
             const output = {
                 rootDir: config.rootDir,
@@ -281,7 +312,10 @@ export class SoilQueryTool {
         let repository = null;
         const warnings = [];
         try {
-            repository = await SqliteSoilRepository.create({ rootDir: input.rootDir });
+            repository = await SqliteSoilRepository.openExisting({ rootDir: input.rootDir });
+            if (!repository) {
+                return { hits: [], warnings };
+            }
             const embedding = await this.embedQuery(input.query);
             if (embedding.warning) {
                 warnings.push(embedding.warning);

package/dist/tools/query/SoilQueryTool/SoilQueryTool.js.map

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package/dist/tools/query/code-search-root.d.ts

@@ -0,0 +1,8 @@
+import type { ToolCallContext } from "../types.js";
+export interface CodeSearchRootInput {
+    path?: string;
+}
+export declare function isBroadCodeSearchRoot(root: string): boolean;
+export declare function findCodeSearchProjectRoot(cwd: string): string | null;
+export declare function resolveCodeSearchRoot(input: CodeSearchRootInput, context: ToolCallContext, toolName: string): string;
+//# sourceMappingURL=code-search-root.d.ts.map

package/dist/tools/query/code-search-root.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"code-search-root.d.ts","sourceRoot":"","sources":["../../../src/tools/query/code-search-root.ts"],"names":[],"mappings":"AAIA,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,aAAa,CAAC;AAEnD,MAAM,WAAW,mBAAmB;IAClC,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAED,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAI3D;AAED,wBAAgB,yBAAyB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAYpE;AAED,wBAAgB,qBAAqB,CACnC,KAAK,EAAE,mBAAmB,EAC1B,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,MAAM,GACf,MAAM,CAiBR"}

package/dist/tools/query/code-search-root.js

@@ -0,0 +1,41 @@
+import * as fs from "node:fs";
+import * as os from "node:os";
+import * as path from "node:path";
+import { validateFilePath } from "../fs/FileValidationTool/FileValidationTool.js";
+export function isBroadCodeSearchRoot(root) {
+    const resolved = path.resolve(root);
+    const homeDir = path.resolve(os.homedir());
+    return resolved === path.parse(resolved).root || resolved === path.dirname(homeDir) || resolved === homeDir;
+}
+export function findCodeSearchProjectRoot(cwd) {
+    let current = path.resolve(cwd);
+    while (true) {
+        if (fs.existsSync(path.join(current, ".git")) || fs.existsSync(path.join(current, "package.json"))) {
+            return current;
+        }
+        const parent = path.dirname(current);
+        if (parent === current) {
+            return null;
+        }
+        current = parent;
+    }
+}
+export function resolveCodeSearchRoot(input, context, toolName) {
+    if (input.path) {
+        const resolvedPath = validateFilePath(input.path, context.cwd).resolved;
+        if (isBroadCodeSearchRoot(resolvedPath)) {
+            throw new Error(`${toolName} refused broad explicit path "${resolvedPath}".`);
+        }
+        return resolvedPath;
+    }
+    const projectRoot = findCodeSearchProjectRoot(context.cwd);
+    if (projectRoot && !isBroadCodeSearchRoot(projectRoot)) {
+        return projectRoot;
+    }
+    const resolvedCwd = path.resolve(context.cwd);
+    if (isBroadCodeSearchRoot(resolvedCwd)) {
+        throw new Error(`${toolName} requires a project working directory or an explicit path; refused broad root "${resolvedCwd}".`);
+    }
+    throw new Error(`${toolName} requires a project working directory or an explicit path; no project root found from "${resolvedCwd}".`);
+}
+//# sourceMappingURL=code-search-root.js.map

package/dist/tools/query/code-search-root.js.map

@@ -0,0 +1 @@
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package/dist/tools/query/runtime-dream-review-tool.d.ts

@@ -0,0 +1,34 @@
+import { z } from "zod";
+import type { StateManager } from "../../base/state/state-manager.js";
+import type { ITool, PermissionCheckResult, ToolCallContext, ToolDescriptionContext, ToolMetadata, ToolResult } from "../types.js";
+export declare const RuntimeDreamReviewInputSchema: z.ZodObject<{
+    run_id: z.ZodString;
+    request_guidance_injection: z.ZodDefault<z.ZodBoolean>;
+}, "strip", z.ZodTypeAny, {
+    run_id: string;
+    request_guidance_injection: boolean;
+}, {
+    run_id: string;
+    request_guidance_injection?: boolean | undefined;
+}>;
+export type RuntimeDreamReviewInput = z.infer<typeof RuntimeDreamReviewInputSchema>;
+export declare class RuntimeDreamReviewTool implements ITool<RuntimeDreamReviewInput, unknown> {
+    private readonly stateManager;
+    readonly metadata: ToolMetadata;
+    readonly inputSchema: z.ZodObject<{
+        run_id: z.ZodString;
+        request_guidance_injection: z.ZodDefault<z.ZodBoolean>;
+    }, "strip", z.ZodTypeAny, {
+        run_id: string;
+        request_guidance_injection: boolean;
+    }, {
+        run_id: string;
+        request_guidance_injection?: boolean | undefined;
+    }>;
+    constructor(stateManager: StateManager);
+    description(_context?: ToolDescriptionContext): string;
+    call(input: RuntimeDreamReviewInput, _context: ToolCallContext): Promise<ToolResult>;
+    checkPermissions(): Promise<PermissionCheckResult>;
+    isConcurrencySafe(): boolean;
+}
+//# sourceMappingURL=runtime-dream-review-tool.d.ts.map

package/dist/tools/query/runtime-dream-review-tool.d.ts.map

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package/dist/tools/query/runtime-dream-review-tool.js

@@ -0,0 +1,62 @@
+import { z } from "zod";
+import { createRuntimeDreamSidecarReview, RuntimeDreamSidecarReviewError, } from "../../runtime/dream-sidecar-review.js";
+export const RuntimeDreamReviewInputSchema = z.object({
+    run_id: z.string().min(1, "run_id is required"),
+    request_guidance_injection: z.boolean().default(false),
+});
+export class RuntimeDreamReviewTool {
+    stateManager;
+    metadata = {
+        name: "runtime_dream_review",
+        aliases: ["dream_review_run", "runtime_sidecar_dream_review"],
+        permissionLevel: "read_only",
+        isReadOnly: true,
+        isDestructive: false,
+        shouldDefer: false,
+        alwaysLoad: false,
+        maxConcurrency: 0,
+        maxOutputChars: 16000,
+        tags: ["session", "runtime", "dream", "self-grounding"],
+    };
+    inputSchema = RuntimeDreamReviewInputSchema;
+    constructor(stateManager) {
+        this.stateManager = stateManager;
+    }
+    description(_context) {
+        return "Attach a read-only Dream sidecar review to an active runtime/background run by id.";
+    }
+    async call(input, _context) {
+        const started = Date.now();
+        try {
+            const review = await createRuntimeDreamSidecarReview({
+                stateManager: this.stateManager,
+                runId: input.run_id,
+                requestGuidanceInjection: input.request_guidance_injection,
+            });
+            return {
+                success: true,
+                data: review,
+                summary: `Read-only Dream review attached to ${review.run.id}: ${review.trend_state.state}`,
+                durationMs: Date.now() - started,
+            };
+        }
+        catch (error) {
+            const code = error instanceof RuntimeDreamSidecarReviewError ? error.code : "unknown";
+            const message = error instanceof Error ? error.message : String(error);
+            return {
+                success: false,
+                data: { code },
+                summary: `runtime_dream_review failed: ${message}`,
+                error: message,
+                durationMs: Date.now() - started,
+            };
+        }
+    }
+    async checkPermissions() {
+        return { status: "allowed" };
+    }
+    isConcurrencySafe() {
+        return true;
+    }
+}
+//# sourceMappingURL=runtime-dream-review-tool.js.map

package/dist/tools/query/runtime-dream-review-tool.js.map

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