nlptoolkit-classification 1.0.8 → 1.0.9

package/dist/Performance/ExperimentPerformance.js

@@ -1,176 +1,199 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
     }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports", "./Performance", "fs", "./DetailedClassificationPerformance", "./ClassificationPerformance"], factory);
-    }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.ExperimentPerformance = void 0;
-    const Performance_1 = require("./Performance");
-    const fs = require("fs");
-    const DetailedClassificationPerformance_1 = require("./DetailedClassificationPerformance");
-    const ClassificationPerformance_1 = require("./ClassificationPerformance");
-    class ExperimentPerformance {
-        /**
-         * A constructor that takes a file name as an input and takes the inputs from that file assigns these inputs to the
-         * errorRate and adds them to the results {@link Array} as a new {@link Performance}.
-         *
-         * @param fileName String input.
-         */
-        constructor(fileName) {
-            this.results = new Array();
-            this.containsDetails = true;
-            this.classification = true;
-            if (fileName != undefined) {
-                let data = fs.readFileSync(fileName, 'utf8');
-                let lines = data.split("\n");
-                for (let line of lines) {
-                    this.results.push(new Performance_1.Performance(Number.parseFloat(line)));
-                }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ExperimentPerformance = void 0;
+const Performance_1 = require("./Performance");
+const fs = __importStar(require("fs"));
+const DetailedClassificationPerformance_1 = require("./DetailedClassificationPerformance");
+const ClassificationPerformance_1 = require("./ClassificationPerformance");
+class ExperimentPerformance {
+    results = new Array();
+    containsDetails = true;
+    classification = true;
+    /**
+     * A constructor that takes a file name as an input and takes the inputs from that file assigns these inputs to the
+     * errorRate and adds them to the results {@link Array} as a new {@link Performance}.
+     *
+     * @param fileName String input.
+     */
+    constructor(fileName) {
+        if (fileName != undefined) {
+            let data = fs.readFileSync(fileName, 'utf8');
+            let lines = data.split("\n");
+            for (let line of lines) {
+                this.results.push(new Performance_1.Performance(Number.parseFloat(line)));
             }
         }
-        /**
-         * The add method takes a {@link Performance} as an input and adds it to the results {@link Array}.
-         *
-         * @param performance {@link Performance} input.
-         */
-        add(performance) {
-            if (!(performance instanceof DetailedClassificationPerformance_1.DetailedClassificationPerformance)) {
-                this.containsDetails = false;
-            }
-            if (!(performance instanceof ClassificationPerformance_1.ClassificationPerformance)) {
-                this.classification = false;
-            }
-            this.results.push(performance);
+    }
+    /**
+     * The add method takes a {@link Performance} as an input and adds it to the results {@link Array}.
+     *
+     * @param performance {@link Performance} input.
+     */
+    add(performance) {
+        if (!(performance instanceof DetailedClassificationPerformance_1.DetailedClassificationPerformance)) {
+            this.containsDetails = false;
         }
-        /**
-         * The numberOfExperiments method returns the size of the results {@link Array}.
-         *
-         * @return The results {@link Array}.
-         */
-        numberOfExperiments() {
-            return this.results.length;
+        if (!(performance instanceof ClassificationPerformance_1.ClassificationPerformance)) {
+            this.classification = false;
         }
-        /**
-         * The getErrorRate method takes an index as an input and returns the errorRate at given index of
-         * results {@link Array}.
-         *
-         * @param index Index of results {@link Array} to retrieve.
-         * @return The errorRate at given index of results {@link Array}.
-         */
-        getErrorRate(index) {
-            return this.results[index].getErrorRate();
+        this.results.push(performance);
+    }
+    /**
+     * The numberOfExperiments method returns the size of the results {@link Array}.
+     *
+     * @return The results {@link Array}.
+     */
+    numberOfExperiments() {
+        return this.results.length;
+    }
+    /**
+     * The getErrorRate method takes an index as an input and returns the errorRate at given index of
+     * results {@link Array}.
+     *
+     * @param index Index of results {@link Array} to retrieve.
+     * @return The errorRate at given index of results {@link Array}.
+     */
+    getErrorRate(index) {
+        return this.results[index].getErrorRate();
+    }
+    /**
+     * The getAccuracy method takes an index as an input. It returns the accuracy of a {@link Performance} at given
+     * index of results {@link Array}.
+     *
+     * @param index Index of results {@link Array} to retrieve.
+     * @return The accuracy of a {@link Performance} at given index of results {@link Array}.
+     */
+    getAccuracy(index) {
+        if (this.results[index] instanceof ClassificationPerformance_1.ClassificationPerformance) {
+            return this.results[index].getAccuracy();
         }
-        /**
-         * The getAccuracy method takes an index as an input. It returns the accuracy of a {@link Performance} at given
-         * index of results {@link Array}.
-         *
-         * @param index Index of results {@link Array} to retrieve.
-         * @return The accuracy of a {@link Performance} at given index of results {@link Array}.
-         */
-        getAccuracy(index) {
-            if (this.results[index] instanceof ClassificationPerformance_1.ClassificationPerformance) {
-                return this.results[index].getAccuracy();
-            }
+    }
+    /**
+     * The meanPerformance method loops through the performances of results {@link Array} and sums up the errorRates
+     * of each then returns a new {@link Performance} with the mean of that summation.
+     *
+     * @return A new {@link Performance} with the mean of the summation of errorRates.
+     */
+    meanPerformance() {
+        let sumError = 0;
+        for (let performance of this.results) {
+            sumError += performance.getErrorRate();
         }
-        /**
-         * The meanPerformance method loops through the performances of results {@link Array} and sums up the errorRates
-         * of each then returns a new {@link Performance} with the mean of that summation.
-         *
-         * @return A new {@link Performance} with the mean of the summation of errorRates.
-         */
-        meanPerformance() {
-            let sumError = 0;
-            for (let performance of this.results) {
-                sumError += performance.getErrorRate();
-            }
-            return new Performance_1.Performance(sumError / this.results.length);
+        return new Performance_1.Performance(sumError / this.results.length);
+    }
+    /**
+     * The meanClassificationPerformance method loops through the performances of results {@link Array} and sums up the
+     * accuracy of each classification performance, then returns a new classificationPerformance with the mean of that
+     * summation.
+     *
+     * @return A new classificationPerformance with the mean of that summation.
+     */
+    meanClassificationPerformance() {
+        if (this.results.length == 0 || !this.classification) {
+            return undefined;
         }
-        /**
-         * The meanClassificationPerformance method loops through the performances of results {@link Array} and sums up the
-         * accuracy of each classification performance, then returns a new classificationPerformance with the mean of that
-         * summation.
-         *
-         * @return A new classificationPerformance with the mean of that summation.
-         */
-        meanClassificationPerformance() {
-            if (this.results.length == 0 || !this.classification) {
-                return undefined;
-            }
-            let sumAccuracy = 0;
-            for (let performance of this.results) {
-                let classificationPerformance = performance;
-                sumAccuracy += classificationPerformance.getAccuracy();
-            }
-            return new ClassificationPerformance_1.ClassificationPerformance(sumAccuracy / this.results.length);
+        let sumAccuracy = 0;
+        for (let performance of this.results) {
+            let classificationPerformance = performance;
+            sumAccuracy += classificationPerformance.getAccuracy();
         }
-        /**
-         * The meanDetailedPerformance method gets the first confusion matrix of results {@link Array}.
-         * Then, it adds new confusion matrices as the {@link DetailedClassificationPerformance} of
-         * other elements of results ArrayList' confusion matrices as a {@link DetailedClassificationPerformance}.
-         *
-         * @return A new {@link DetailedClassificationPerformance} with the {@link ConfusionMatrix} sum.
-         */
-        meanDetailedPerformance() {
-            if (this.results.length == 0 || !this.containsDetails) {
-                return undefined;
-            }
-            let sum = this.results[0].getConfusionMatrix();
-            for (let i = 1; i < this.results.length; i++) {
-                sum.addConfusionMatrix(this.results[i].getConfusionMatrix());
-            }
-            return new DetailedClassificationPerformance_1.DetailedClassificationPerformance(sum);
+        return new ClassificationPerformance_1.ClassificationPerformance(sumAccuracy / this.results.length);
+    }
+    /**
+     * The meanDetailedPerformance method gets the first confusion matrix of results {@link Array}.
+     * Then, it adds new confusion matrices as the {@link DetailedClassificationPerformance} of
+     * other elements of results ArrayList' confusion matrices as a {@link DetailedClassificationPerformance}.
+     *
+     * @return A new {@link DetailedClassificationPerformance} with the {@link ConfusionMatrix} sum.
+     */
+    meanDetailedPerformance() {
+        if (this.results.length == 0 || !this.containsDetails) {
+            return undefined;
         }
-        /**
-         * The standardDeviationPerformance method loops through the {@link Performance}s of results {@link Array} and
-         * returns a new Performance with the standard deviation.
-         *
-         * @return A new Performance with the standard deviation.
-         */
-        standardDeviationPerformance() {
-            let sumErrorRate = 0;
-            let averagePerformance = this.meanPerformance();
-            for (let performance of this.results) {
-                sumErrorRate += Math.pow(performance.getErrorRate() - averagePerformance.getErrorRate(), 2);
-            }
-            return new Performance_1.Performance(Math.sqrt(sumErrorRate / (this.results.length - 1)));
+        let sum = this.results[0].getConfusionMatrix();
+        for (let i = 1; i < this.results.length; i++) {
+            sum.addConfusionMatrix(this.results[i].getConfusionMatrix());
         }
-        /**
-         * The standardDeviationClassificationPerformance method loops through the {@link Performance}s of results {@link ArrayList} and
-         * returns a new {@link ClassificationPerformance} with standard deviation.
-         *
-         * @return A new {@link ClassificationPerformance} with standard deviation.
-         */
-        standardDeviationClassificationPerformance() {
-            if (this.results.length == 0 || !this.classification) {
-                return undefined;
-            }
-            let sumAccuracy = 0, sumErrorRate = 0;
-            let averageClassificationPerformance = this.meanClassificationPerformance();
-            for (let performance of this.results) {
-                let classificationPerformance = performance;
-                sumAccuracy += Math.pow(classificationPerformance.getAccuracy() - averageClassificationPerformance.getAccuracy(), 2);
-                sumErrorRate += Math.pow(classificationPerformance.getErrorRate() - averageClassificationPerformance.getErrorRate(), 2);
-            }
-            return new ClassificationPerformance_1.ClassificationPerformance(Math.sqrt(sumAccuracy / (this.results.length - 1)), Math.sqrt(sumErrorRate / (this.results.length - 1)));
+        return new DetailedClassificationPerformance_1.DetailedClassificationPerformance(sum);
+    }
+    /**
+     * The standardDeviationPerformance method loops through the {@link Performance}s of results {@link Array} and
+     * returns a new Performance with the standard deviation.
+     *
+     * @return A new Performance with the standard deviation.
+     */
+    standardDeviationPerformance() {
+        let sumErrorRate = 0;
+        let averagePerformance = this.meanPerformance();
+        for (let performance of this.results) {
+            sumErrorRate += Math.pow(performance.getErrorRate() - averagePerformance.getErrorRate(), 2);
+        }
+        return new Performance_1.Performance(Math.sqrt(sumErrorRate / (this.results.length - 1)));
+    }
+    /**
+     * The standardDeviationClassificationPerformance method loops through the {@link Performance}s of results {@link ArrayList} and
+     * returns a new {@link ClassificationPerformance} with standard deviation.
+     *
+     * @return A new {@link ClassificationPerformance} with standard deviation.
+     */
+    standardDeviationClassificationPerformance() {
+        if (this.results.length == 0 || !this.classification) {
+            return undefined;
         }
-        /**
-         * The isBetter method  takes an {@link ExperimentPerformance} as an input and returns true if the result of compareTo method is positive
-         * and false otherwise.
-         *
-         * @param experimentPerformance {@link ExperimentPerformance} input.
-         * @return True if the result of compareTo method is positive and false otherwise.
-         */
-        isBetter(experimentPerformance) {
-            let accuracy1 = this.meanClassificationPerformance().getAccuracy();
-            let accuracy2 = experimentPerformance.meanClassificationPerformance().getAccuracy();
-            return accuracy1 > accuracy2;
+        let sumAccuracy = 0, sumErrorRate = 0;
+        let averageClassificationPerformance = this.meanClassificationPerformance();
+        for (let performance of this.results) {
+            let classificationPerformance = performance;
+            sumAccuracy += Math.pow(classificationPerformance.getAccuracy() - averageClassificationPerformance.getAccuracy(), 2);
+            sumErrorRate += Math.pow(classificationPerformance.getErrorRate() - averageClassificationPerformance.getErrorRate(), 2);
         }
+        return new ClassificationPerformance_1.ClassificationPerformance(Math.sqrt(sumAccuracy / (this.results.length - 1)), Math.sqrt(sumErrorRate / (this.results.length - 1)));
     }
-    exports.ExperimentPerformance = ExperimentPerformance;
-});
+    /**
+     * The isBetter method  takes an {@link ExperimentPerformance} as an input and returns true if the result of compareTo method is positive
+     * and false otherwise.
+     *
+     * @param experimentPerformance {@link ExperimentPerformance} input.
+     * @return True if the result of compareTo method is positive and false otherwise.
+     */
+    isBetter(experimentPerformance) {
+        let accuracy1 = this.meanClassificationPerformance().getAccuracy();
+        let accuracy2 = experimentPerformance.meanClassificationPerformance().getAccuracy();
+        return accuracy1 > accuracy2;
+    }
+}
+exports.ExperimentPerformance = ExperimentPerformance;
 //# sourceMappingURL=ExperimentPerformance.js.map

package/dist/Performance/ExperimentPerformance.js.map

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package/dist/Performance/Performance.js

@@ -1,33 +1,24 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Performance = void 0;
+class Performance {
+    errorRate;
+    /**
+     * Constructor that sets the error rate.
+     *
+     * @param errorRate Double input.
+     */
+    constructor(errorRate) {
+        this.errorRate = errorRate;
     }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports"], factory);
+    /**
+     * Accessor for the error rate.
+     *
+     * @return Double errorRate.
+     */
+    getErrorRate() {
+        return this.errorRate;
     }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.Performance = void 0;
-    class Performance {
-        /**
-         * Constructor that sets the error rate.
-         *
-         * @param errorRate Double input.
-         */
-        constructor(errorRate) {
-            this.errorRate = errorRate;
-        }
-        /**
-         * Accessor for the error rate.
-         *
-         * @return Double errorRate.
-         */
-        getErrorRate() {
-            return this.errorRate;
-        }
-    }
-    exports.Performance = Performance;
-});
+}
+exports.Performance = Performance;
 //# sourceMappingURL=Performance.js.map

package/dist/Performance/Performance.js.map

@@ -1 +1 @@
-{"version":3,"file":"Performance.js","sourceRoot":"","sources":["../../source/Performance/Performance.ts"],"names":[],"mappings":";;;;;;;;;;;;IAAA,MAAa,WAAW;QAIpB;;;;WAIG;QACH,YAAY,SAAiB;YACzB,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;QAC9B,CAAC;QAED;;;;WAIG;QACH,YAAY;YACR,OAAO,IAAI,CAAC,SAAS,CAAA;QACzB,CAAC;KACJ;IArBD,kCAqBC"}
+{"version":3,"file":"Performance.js","sourceRoot":"","sources":["../../source/Performance/Performance.ts"],"names":[],"mappings":";;;AAAA,MAAa,WAAW;IAEV,SAAS,CAAQ;IAE3B;;;;OAIG;IACH,YAAY,SAAiB;QACzB,IAAI,CAAC,SAAS,GAAG,SAAS,CAAA;IAC9B,CAAC;IAED;;;;OAIG;IACH,YAAY;QACR,OAAO,IAAI,CAAC,SAAS,CAAA;IACzB,CAAC;CACJ;AArBD,kCAqBC"}

package/dist/StatisticalTest/Combined5x2F.js

@@ -1,55 +1,45 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
-    }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports", "./PairedTest", "./StatisticalTestResult", "nlptoolkit-math/dist/Distribution"], factory);
-    }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.Combined5x2F = void 0;
-    const PairedTest_1 = require("./PairedTest");
-    const StatisticalTestResult_1 = require("./StatisticalTestResult");
-    const Distribution_1 = require("nlptoolkit-math/dist/Distribution");
-    class Combined5x2F extends PairedTest_1.PairedTest {
-        /**
-         * Calculates the test statistic of the combined 5x2 cv F test.
-         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
-         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
-         * @return Given the performances of two classifiers, the test statistic of the combined 5x2 cv F test.
-         */
-        testStatistic(classifier1, classifier2) {
-            let difference = new Array();
-            let numerator = 0;
-            for (let i = 0; i < classifier1.numberOfExperiments(); i++) {
-                difference.push(classifier1.getErrorRate(i) - classifier2.getErrorRate(i));
-                numerator += difference[i] * difference[i];
-            }
-            let denominator = 0;
-            for (let i = 0; i < classifier1.numberOfExperiments() / 2; i++) {
-                let mean = (difference[2 * i] + difference[2 * i + 1]) / 2;
-                let variance = (difference[2 * i] - mean) * (difference[2 * i] - mean) +
-                    (difference[2 * i + 1] - mean) * (difference[2 * i + 1] - mean);
-                denominator += variance;
-            }
-            denominator *= 2;
-            return numerator / denominator;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.Combined5x2F = void 0;
+const PairedTest_1 = require("./PairedTest");
+const StatisticalTestResult_1 = require("./StatisticalTestResult");
+const Distribution_1 = require("nlptoolkit-math/dist/Distribution");
+class Combined5x2F extends PairedTest_1.PairedTest {
+    /**
+     * Calculates the test statistic of the combined 5x2 cv F test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Given the performances of two classifiers, the test statistic of the combined 5x2 cv F test.
+     */
+    testStatistic(classifier1, classifier2) {
+        let difference = new Array();
+        let numerator = 0;
+        for (let i = 0; i < classifier1.numberOfExperiments(); i++) {
+            difference.push(classifier1.getErrorRate(i) - classifier2.getErrorRate(i));
+            numerator += difference[i] * difference[i];
         }
-        /**
-         * Compares two classification algorithms based on their performances (accuracy or error rate) using combined 5x2 cv F test.
-         * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
-         * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
-         * @return Statistical test result of the comparison.
-         */
-        compareClassifiers(classifier1, classifier2) {
-            let statistic = this.testStatistic(classifier1, classifier2);
-            let degreeOfFreedom1 = classifier1.numberOfExperiments();
-            let degreeOfFreedom2 = classifier1.numberOfExperiments() / 2;
-            return new StatisticalTestResult_1.StatisticalTestResult(Distribution_1.Distribution.fDistribution(statistic, degreeOfFreedom1, degreeOfFreedom2), true);
+        let denominator = 0;
+        for (let i = 0; i < classifier1.numberOfExperiments() / 2; i++) {
+            let mean = (difference[2 * i] + difference[2 * i + 1]) / 2;
+            let variance = (difference[2 * i] - mean) * (difference[2 * i] - mean) +
+                (difference[2 * i + 1] - mean) * (difference[2 * i + 1] - mean);
+            denominator += variance;
         }
+        denominator *= 2;
+        return numerator / denominator;
+    }
+    /**
+     * Compares two classification algorithms based on their performances (accuracy or error rate) using combined 5x2 cv F test.
+     * @param classifier1 Performance (error rate or accuracy) results of the first classifier.
+     * @param classifier2 Performance (error rate or accuracy) results of the second classifier.
+     * @return Statistical test result of the comparison.
+     */
+    compareClassifiers(classifier1, classifier2) {
+        let statistic = this.testStatistic(classifier1, classifier2);
+        let degreeOfFreedom1 = classifier1.numberOfExperiments();
+        let degreeOfFreedom2 = classifier1.numberOfExperiments() / 2;
+        return new StatisticalTestResult_1.StatisticalTestResult(Distribution_1.Distribution.fDistribution(statistic, degreeOfFreedom1, degreeOfFreedom2), true);
     }
-    exports.Combined5x2F = Combined5x2F;
-});
+}
+exports.Combined5x2F = Combined5x2F;
 //# sourceMappingURL=Combined5x2F.js.map

package/dist/StatisticalTest/Combined5x2F.js.map

@@ -1 +1 @@
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