nlptoolkit-classification 1.0.8 → 1.0.9

package/dist/Model/Parametric/LdaModel.js

@@ -1,98 +1,90 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.LdaModel = void 0;
+const GaussianModel_1 = require("./GaussianModel");
+const Vector_1 = require("nlptoolkit-math/dist/Vector");
+const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
+const Partition_1 = require("../../InstanceList/Partition");
+const Matrix_1 = require("nlptoolkit-math/dist/Matrix");
+class LdaModel extends GaussianModel_1.GaussianModel {
+    w0;
+    w;
+    /**
+     * Loads a Linear Discriminant Analysis model from an input model file.
+     * @param fileName Model file name.
+     */
+    constructor2(fileName) {
+        let input = new FileContents_1.FileContents(fileName);
+        let size = this.loadPriorDistribution(input);
+        this.loadWandW0(input, size);
     }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports", "./GaussianModel", "nlptoolkit-math/dist/Vector", "nlptoolkit-util/dist/FileContents", "../../InstanceList/Partition", "nlptoolkit-math/dist/Matrix"], factory);
+    /**
+     * The calculateMetric method takes an {@link Instance} and a String as inputs. It returns the dot product of given Instance
+     * and wi plus w0i.
+     *
+     * @param instance {@link Instance} input.
+     * @param Ci       String input.
+     * @return The dot product of given Instance and wi plus w0i.
+     */
+    calculateMetric(instance, Ci) {
+        let xi = instance.toVector();
+        let wi = this.w.get(Ci);
+        let w0i = this.w0.get(Ci);
+        return wi.dotProduct(xi) + w0i;
     }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.LdaModel = void 0;
-    const GaussianModel_1 = require("./GaussianModel");
-    const Vector_1 = require("nlptoolkit-math/dist/Vector");
-    const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
-    const Partition_1 = require("../../InstanceList/Partition");
-    const Matrix_1 = require("nlptoolkit-math/dist/Matrix");
-    class LdaModel extends GaussianModel_1.GaussianModel {
-        /**
-         * Loads a Linear Discriminant Analysis model from an input model file.
-         * @param fileName Model file name.
-         */
-        constructor2(fileName) {
-            let input = new FileContents_1.FileContents(fileName);
-            let size = this.loadPriorDistribution(input);
-            this.loadWandW0(input, size);
+    /**
+     * Loads w0 and w hash maps from an input file. The number of items in the hash map is given by the parameter size.
+     * @param input Input file
+     * @param size Number of items in the hash map read.
+     * @throws IOException If the file can not be read, it throws IOException.
+     */
+    loadWandW0(input, size) {
+        this.w0 = new Map();
+        for (let i = 0; i < size; i++) {
+            let line = input.readLine();
+            let items = line.split(" ");
+            this.w0.set(items[0], parseFloat(items[1]));
         }
-        /**
-         * The calculateMetric method takes an {@link Instance} and a String as inputs. It returns the dot product of given Instance
-         * and wi plus w0i.
-         *
-         * @param instance {@link Instance} input.
-         * @param Ci       String input.
-         * @return The dot product of given Instance and wi plus w0i.
-         */
-        calculateMetric(instance, Ci) {
-            let xi = instance.toVector();
-            let wi = this.w.get(Ci);
-            let w0i = this.w0.get(Ci);
-            return wi.dotProduct(xi) + w0i;
-        }
-        /**
-         * Loads w0 and w hash maps from an input file. The number of items in the hash map is given by the parameter size.
-         * @param input Input file
-         * @param size Number of items in the hash map read.
-         * @throws IOException If the file can not be read, it throws IOException.
-         */
-        loadWandW0(input, size) {
-            this.w0 = new Map();
-            for (let i = 0; i < size; i++) {
-                let line = input.readLine();
-                let items = line.split(" ");
-                this.w0.set(items[0], parseFloat(items[1]));
-            }
-            this.w = this.loadVectors(input, size);
-        }
-        saveTxt(fileName) {
-        }
-        /**
-         * Training algorithm for the linear discriminant analysis classifier (Introduction to Machine Learning, Alpaydin, 2015).
-         *
-         * @param trainSet   Training data given to the algorithm.
-         * @param parameters -
-         */
-        train(trainSet, parameters) {
-            this.w0 = new Map();
-            this.w = new Map();
-            this.priorDistribution = trainSet.classDistribution();
-            let classLists = new Partition_1.Partition(trainSet);
-            let covariance = new Matrix_1.Matrix(trainSet.get(0).continuousAttributeSize(), trainSet.get(0).continuousAttributeSize());
-            for (let i = 0; i < classLists.size(); i++) {
-                let averageVector = new Vector_1.Vector(classLists.get(i).continuousAttributeAverage());
-                let classCovariance = classLists.get(i).covariance(averageVector);
-                classCovariance.multiplyWithConstant(classLists.get(i).size() - 1);
-                covariance.add(classCovariance);
-            }
-            covariance.divideByConstant(trainSet.size() - classLists.size());
-            covariance.inverse();
-            for (let i = 0; i < classLists.size(); i++) {
-                let Ci = classLists.get(i).getClassLabel();
-                let averageVector = new Vector_1.Vector(classLists.get(i).continuousAttributeAverage());
-                let wi = covariance.multiplyWithVectorFromRight(averageVector);
-                this.w.set(Ci, wi);
-                let w0i = -0.5 * wi.dotProduct(averageVector) + Math.log(this.priorDistribution.getProbability(Ci));
-                this.w0.set(Ci, w0i);
-            }
+        this.w = this.loadVectors(input, size);
+    }
+    saveTxt(fileName) {
+    }
+    /**
+     * Training algorithm for the linear discriminant analysis classifier (Introduction to Machine Learning, Alpaydin, 2015).
+     *
+     * @param trainSet   Training data given to the algorithm.
+     * @param parameters -
+     */
+    train(trainSet, parameters) {
+        this.w0 = new Map();
+        this.w = new Map();
+        this.priorDistribution = trainSet.classDistribution();
+        let classLists = new Partition_1.Partition(trainSet);
+        let covariance = new Matrix_1.Matrix(trainSet.get(0).continuousAttributeSize(), trainSet.get(0).continuousAttributeSize());
+        for (let i = 0; i < classLists.size(); i++) {
+            let averageVector = new Vector_1.Vector(classLists.get(i).continuousAttributeAverage());
+            let classCovariance = classLists.get(i).covariance(averageVector);
+            classCovariance.multiplyWithConstant(classLists.get(i).size() - 1);
+            covariance.add(classCovariance);
         }
-        /**
-         * Loads the Lda model from an input file.
-         * @param fileName File name of the Lda model.
-         */
-        loadModel(fileName) {
-            this.constructor2(fileName);
+        covariance.divideByConstant(trainSet.size() - classLists.size());
+        covariance.inverse();
+        for (let i = 0; i < classLists.size(); i++) {
+            let Ci = classLists.get(i).getClassLabel();
+            let averageVector = new Vector_1.Vector(classLists.get(i).continuousAttributeAverage());
+            let wi = covariance.multiplyWithVectorFromRight(averageVector);
+            this.w.set(Ci, wi);
+            let w0i = -0.5 * wi.dotProduct(averageVector) + Math.log(this.priorDistribution.getProbability(Ci));
+            this.w0.set(Ci, w0i);
         }
     }
-    exports.LdaModel = LdaModel;
-});
+    /**
+     * Loads the Lda model from an input file.
+     * @param fileName File name of the Lda model.
+     */
+    loadModel(fileName) {
+        this.constructor2(fileName);
+    }
+}
+exports.LdaModel = LdaModel;
 //# sourceMappingURL=LdaModel.js.map

package/dist/Model/Parametric/LdaModel.js.map

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package/dist/Model/Parametric/NaiveBayesModel.js

@@ -1,144 +1,131 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.NaiveBayesModel = void 0;
+const GaussianModel_1 = require("./GaussianModel");
+const DiscreteAttribute_1 = require("../../Attribute/DiscreteAttribute");
+const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
+const Partition_1 = require("../../InstanceList/Partition");
+class NaiveBayesModel extends GaussianModel_1.GaussianModel {
+    classMeans = undefined;
+    classDeviations = undefined;
+    classAttributeDistributions = undefined;
+    /**
+     * Loads a naive Bayes model from an input model file.
+     * @param fileName Model file name.
+     */
+    constructor3(fileName) {
+        let input = new FileContents_1.FileContents(fileName);
+        let size = this.loadPriorDistribution(input);
+        this.classMeans = this.loadVectors(input, size);
+        this.classDeviations = this.loadVectors(input, size);
     }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports", "./GaussianModel", "../../Attribute/DiscreteAttribute", "nlptoolkit-util/dist/FileContents", "../../InstanceList/Partition"], factory);
-    }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.NaiveBayesModel = void 0;
-    const GaussianModel_1 = require("./GaussianModel");
-    const DiscreteAttribute_1 = require("../../Attribute/DiscreteAttribute");
-    const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
-    const Partition_1 = require("../../InstanceList/Partition");
-    class NaiveBayesModel extends GaussianModel_1.GaussianModel {
-        constructor() {
-            super(...arguments);
-            this.classMeans = undefined;
-            this.classDeviations = undefined;
-            this.classAttributeDistributions = undefined;
+    /**
+     * The calculateMetric method takes an {@link Instance} and a String as inputs, and it returns the log likelihood of
+     * these inputs.
+     *
+     * @param instance {@link Instance} input.
+     * @param Ci       String input.
+     * @return The log likelihood of inputs.
+     */
+    calculateMetric(instance, Ci) {
+        if (this.classAttributeDistributions == undefined) {
+            return this.logLikelihoodContinuous(Ci, instance);
         }
-        /**
-         * Loads a naive Bayes model from an input model file.
-         * @param fileName Model file name.
-         */
-        constructor3(fileName) {
-            let input = new FileContents_1.FileContents(fileName);
-            let size = this.loadPriorDistribution(input);
-            this.classMeans = this.loadVectors(input, size);
-            this.classDeviations = this.loadVectors(input, size);
+        else {
+            return this.logLikelihoodDiscrete(Ci, instance);
         }
-        /**
-         * The calculateMetric method takes an {@link Instance} and a String as inputs, and it returns the log likelihood of
-         * these inputs.
-         *
-         * @param instance {@link Instance} input.
-         * @param Ci       String input.
-         * @return The log likelihood of inputs.
-         */
-        calculateMetric(instance, Ci) {
-            if (this.classAttributeDistributions == undefined) {
-                return this.logLikelihoodContinuous(Ci, instance);
-            }
-            else {
-                return this.logLikelihoodDiscrete(Ci, instance);
-            }
-        }
-        /**
-         * The logLikelihoodContinuous method takes an {@link Instance} and a class label as inputs. First it gets the logarithm
-         * of given class label's probability via prior distribution as logLikelihood. Then it loops times of given instance attribute size, and accumulates the
-         * logLikelihood by calculating -0.5 * ((xi - mi) / si )** 2).
-         *
-         * @param classLabel String input class label.
-         * @param instance   {@link Instance} input.
-         * @return The log likelihood of given class label and {@link Instance}.
-         */
-        logLikelihoodContinuous(classLabel, instance) {
-            let logLikelihood = Math.log(this.priorDistribution.getProbability(classLabel));
-            for (let i = 0; i < instance.attributeSize(); i++) {
-                let xi = instance.getAttribute(i).getValue();
-                let mi = this.classMeans.get(classLabel).getValue(i);
-                let si = this.classDeviations.get(classLabel).getValue(i);
-                if (si != 0) {
-                    logLikelihood += -0.5 * Math.pow((xi - mi) / si, 2);
-                }
-            }
-            return logLikelihood;
-        }
-        /**
-         * The logLikelihoodDiscrete method takes an {@link Instance} and a class label as inputs. First it gets the logarithm
-         * of given class label's probability via prior distribution as logLikelihood and gets the class attribute distribution of given class label.
-         * Then it loops times of given instance attribute size, and accumulates the logLikelihood by calculating the logarithm of
-         * corresponding attribute distribution's smoothed probability by using laplace smoothing on xi.
-         *
-         * @param classLabel String input class label.
-         * @param instance   {@link Instance} input.
-         * @return The log likelihood of given class label and {@link Instance}.
-         */
-        logLikelihoodDiscrete(classLabel, instance) {
-            let logLikelihood = Math.log(this.priorDistribution.getProbability(classLabel));
-            let attributeDistributions = this.classAttributeDistributions.get(classLabel);
-            for (let i = 0; i < instance.attributeSize(); i++) {
-                let xi = instance.getAttribute(i).getValue();
-                logLikelihood += Math.log(attributeDistributions[i].getProbabilityLaplaceSmoothing(xi));
+    }
+    /**
+     * The logLikelihoodContinuous method takes an {@link Instance} and a class label as inputs. First it gets the logarithm
+     * of given class label's probability via prior distribution as logLikelihood. Then it loops times of given instance attribute size, and accumulates the
+     * logLikelihood by calculating -0.5 * ((xi - mi) / si )** 2).
+     *
+     * @param classLabel String input class label.
+     * @param instance   {@link Instance} input.
+     * @return The log likelihood of given class label and {@link Instance}.
+     */
+    logLikelihoodContinuous(classLabel, instance) {
+        let logLikelihood = Math.log(this.priorDistribution.getProbability(classLabel));
+        for (let i = 0; i < instance.attributeSize(); i++) {
+            let xi = instance.getAttribute(i).getValue();
+            let mi = this.classMeans.get(classLabel).getValue(i);
+            let si = this.classDeviations.get(classLabel).getValue(i);
+            if (si != 0) {
+                logLikelihood += -0.5 * Math.pow((xi - mi) / si, 2);
             }
-            return logLikelihood;
         }
-        saveTxt(fileName) {
+        return logLikelihood;
+    }
+    /**
+     * The logLikelihoodDiscrete method takes an {@link Instance} and a class label as inputs. First it gets the logarithm
+     * of given class label's probability via prior distribution as logLikelihood and gets the class attribute distribution of given class label.
+     * Then it loops times of given instance attribute size, and accumulates the logLikelihood by calculating the logarithm of
+     * corresponding attribute distribution's smoothed probability by using laplace smoothing on xi.
+     *
+     * @param classLabel String input class label.
+     * @param instance   {@link Instance} input.
+     * @return The log likelihood of given class label and {@link Instance}.
+     */
+    logLikelihoodDiscrete(classLabel, instance) {
+        let logLikelihood = Math.log(this.priorDistribution.getProbability(classLabel));
+        let attributeDistributions = this.classAttributeDistributions.get(classLabel);
+        for (let i = 0; i < instance.attributeSize(); i++) {
+            let xi = instance.getAttribute(i).getValue();
+            logLikelihood += Math.log(attributeDistributions[i].getProbabilityLaplaceSmoothing(xi));
         }
-        /**
-         * Training algorithm for Naive Bayes algorithm with a continuous data set.
-         *
-         * @param classLists        Instances are divided into K lists, where each list contains only instances from a single class
-         */
-        trainContinuousVersion(classLists) {
-            this.classMeans = new Map();
-            this.classDeviations = new Map();
-            for (let i = 0; i < classLists.size(); i++) {
-                let classLabel = classLists.get(i).getClassLabel();
-                let averageVector = classLists.get(i).average().toVector();
-                this.classMeans.set(classLabel, averageVector);
-                let standardDeviationVector = classLists.get(i).standardDeviation().toVector();
-                this.classDeviations.set(classLabel, standardDeviationVector);
-            }
+        return logLikelihood;
+    }
+    saveTxt(fileName) {
+    }
+    /**
+     * Training algorithm for Naive Bayes algorithm with a continuous data set.
+     *
+     * @param classLists        Instances are divided into K lists, where each list contains only instances from a single class
+     */
+    trainContinuousVersion(classLists) {
+        this.classMeans = new Map();
+        this.classDeviations = new Map();
+        for (let i = 0; i < classLists.size(); i++) {
+            let classLabel = classLists.get(i).getClassLabel();
+            let averageVector = classLists.get(i).average().toVector();
+            this.classMeans.set(classLabel, averageVector);
+            let standardDeviationVector = classLists.get(i).standardDeviation().toVector();
+            this.classDeviations.set(classLabel, standardDeviationVector);
         }
-        /**
-         * Training algorithm for Naive Bayes algorithm with a discrete data set.
-         * @param classLists Instances are divided into K lists, where each list contains only instances from a single class
-         */
-        trainDiscreteVersion(classLists) {
-            this.classAttributeDistributions = new Map();
-            for (let i = 0; i < classLists.size(); i++) {
-                this.classAttributeDistributions.set(classLists.get(i).getClassLabel(), classLists.get(i).allAttributesDistribution());
-            }
+    }
+    /**
+     * Training algorithm for Naive Bayes algorithm with a discrete data set.
+     * @param classLists Instances are divided into K lists, where each list contains only instances from a single class
+     */
+    trainDiscreteVersion(classLists) {
+        this.classAttributeDistributions = new Map();
+        for (let i = 0; i < classLists.size(); i++) {
+            this.classAttributeDistributions.set(classLists.get(i).getClassLabel(), classLists.get(i).allAttributesDistribution());
         }
-        /**
-         * Training algorithm for Naive Bayes algorithm. It basically calls trainContinuousVersion for continuous data sets,
-         * trainDiscreteVersion for discrete data sets.
-         * @param trainSet Training data given to the algorithm
-         * @param parameters -
-         */
-        train(trainSet, parameters) {
-            this.priorDistribution = trainSet.classDistribution();
-            let classLists = new Partition_1.Partition(trainSet);
-            if (classLists.get(0).get(0).getAttribute(0) instanceof DiscreteAttribute_1.DiscreteAttribute) {
-                this.trainDiscreteVersion(classLists);
-            }
-            else {
-                this.trainContinuousVersion(classLists);
-            }
+    }
+    /**
+     * Training algorithm for Naive Bayes algorithm. It basically calls trainContinuousVersion for continuous data sets,
+     * trainDiscreteVersion for discrete data sets.
+     * @param trainSet Training data given to the algorithm
+     * @param parameters -
+     */
+    train(trainSet, parameters) {
+        this.priorDistribution = trainSet.classDistribution();
+        let classLists = new Partition_1.Partition(trainSet);
+        if (classLists.get(0).get(0).getAttribute(0) instanceof DiscreteAttribute_1.DiscreteAttribute) {
+            this.trainDiscreteVersion(classLists);
         }
-        /**
-         * Loads the naive Bayes model from an input file.
-         * @param fileName File name of the naive Bayes model.
-         */
-        loadModel(fileName) {
-            this.constructor3(fileName);
+        else {
+            this.trainContinuousVersion(classLists);
         }
     }
-    exports.NaiveBayesModel = NaiveBayesModel;
-});
+    /**
+     * Loads the naive Bayes model from an input file.
+     * @param fileName File name of the naive Bayes model.
+     */
+    loadModel(fileName) {
+        this.constructor3(fileName);
+    }
+}
+exports.NaiveBayesModel = NaiveBayesModel;
 //# sourceMappingURL=NaiveBayesModel.js.map

package/dist/Model/Parametric/NaiveBayesModel.js.map

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