nlptoolkit-classification 1.0.8 → 1.0.9

package/dist/Model/NeuralNetwork/DeepNetworkModel.js

@@ -1,187 +1,180 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DeepNetworkModel = void 0;
+const NeuralNetworkModel_1 = require("./NeuralNetworkModel");
+const Matrix_1 = require("nlptoolkit-math/dist/Matrix");
+const ActivationFunction_1 = require("../../Parameter/ActivationFunction");
+const Vector_1 = require("nlptoolkit-math/dist/Vector");
+const ClassificationPerformance_1 = require("../../Performance/ClassificationPerformance");
+const Random_1 = require("nlptoolkit-util/dist/Random");
+const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
+const Partition_1 = require("../../InstanceList/Partition");
+class DeepNetworkModel extends NeuralNetworkModel_1.NeuralNetworkModel {
+    weights;
+    hiddenLayerSize;
+    activationFunction;
+    /**
+     * The allocateWeights method takes {@link DeepNetworkParameter}s as an input. First it adds random weights to the {@link Array}
+     * of {@link Matrix} weights' first layer. Then it loops through the layers and adds random weights till the last layer.
+     * At the end it adds random weights to the last layer and also sets the hiddenLayerSize value.
+     *
+     * @param parameters {@link DeepNetworkParameter} input.
+     */
+    allocateWeights(parameters) {
+        this.weights = new Array();
+        this.weights.push(this.allocateLayerWeights(parameters.getHiddenNodes(0), this.d + 1, new Random_1.Random(parameters.getSeed())));
+        for (let i = 0; i < parameters.layerSize() - 1; i++) {
+            this.weights.push(this.allocateLayerWeights(parameters.getHiddenNodes(i + 1), parameters.getHiddenNodes(i) + 1, new Random_1.Random(parameters.getSeed())));
+        }
+        this.weights.push(this.allocateLayerWeights(this.K, parameters.getHiddenNodes(parameters.layerSize() - 1) + 1, new Random_1.Random(parameters.getSeed())));
+        this.hiddenLayerSize = parameters.layerSize();
     }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports", "./NeuralNetworkModel", "nlptoolkit-math/dist/Matrix", "../../Parameter/ActivationFunction", "nlptoolkit-math/dist/Vector", "../../Performance/ClassificationPerformance", "nlptoolkit-util/dist/Random", "nlptoolkit-util/dist/FileContents", "../../InstanceList/Partition"], factory);
+    /**
+     * The setBestWeights method creates an {@link Array} of Matrix as bestWeights and clones the values of weights {@link Array}
+     * into this newly created {@link Array}.
+     *
+     * @return An {@link Array} clones from the weights ArrayList.
+     */
+    setBestWeights() {
+        let bestWeights = new Array();
+        for (let m of this.weights) {
+            bestWeights.push(m.clone());
+        }
+        return bestWeights;
     }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.DeepNetworkModel = void 0;
-    const NeuralNetworkModel_1 = require("./NeuralNetworkModel");
-    const Matrix_1 = require("nlptoolkit-math/dist/Matrix");
-    const ActivationFunction_1 = require("../../Parameter/ActivationFunction");
-    const Vector_1 = require("nlptoolkit-math/dist/Vector");
-    const ClassificationPerformance_1 = require("../../Performance/ClassificationPerformance");
-    const Random_1 = require("nlptoolkit-util/dist/Random");
-    const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
-    const Partition_1 = require("../../InstanceList/Partition");
-    class DeepNetworkModel extends NeuralNetworkModel_1.NeuralNetworkModel {
-        /**
-         * The allocateWeights method takes {@link DeepNetworkParameter}s as an input. First it adds random weights to the {@link Array}
-         * of {@link Matrix} weights' first layer. Then it loops through the layers and adds random weights till the last layer.
-         * At the end it adds random weights to the last layer and also sets the hiddenLayerSize value.
-         *
-         * @param parameters {@link DeepNetworkParameter} input.
-         */
-        allocateWeights(parameters) {
-            this.weights = new Array();
-            this.weights.push(this.allocateLayerWeights(parameters.getHiddenNodes(0), this.d + 1, new Random_1.Random(parameters.getSeed())));
-            for (let i = 0; i < parameters.layerSize() - 1; i++) {
-                this.weights.push(this.allocateLayerWeights(parameters.getHiddenNodes(i + 1), parameters.getHiddenNodes(i) + 1, new Random_1.Random(parameters.getSeed())));
-            }
-            this.weights.push(this.allocateLayerWeights(this.K, parameters.getHiddenNodes(parameters.layerSize() - 1) + 1, new Random_1.Random(parameters.getSeed())));
-            this.hiddenLayerSize = parameters.layerSize();
+    /**
+     * Loads a deep network model from an input model file.
+     * @param fileName Model file name.
+     */
+    constructor2(fileName) {
+        let input = new FileContents_1.FileContents(fileName);
+        this.loadClassLabels(input);
+        this.hiddenLayerSize = parseInt(input.readLine());
+        this.weights = new Array();
+        for (let i = 0; i < this.hiddenLayerSize + 1; i++) {
+            this.weights.push(this.loadMatrix(input));
         }
-        /**
-         * The setBestWeights method creates an {@link Array} of Matrix as bestWeights and clones the values of weights {@link Array}
-         * into this newly created {@link Array}.
-         *
-         * @return An {@link Array} clones from the weights ArrayList.
-         */
-        setBestWeights() {
-            let bestWeights = new Array();
-            for (let m of this.weights) {
-                bestWeights.push(m.clone());
+        this.activationFunction = this.loadActivationFunction(input);
+    }
+    /**
+     * The calculateOutput method loops size of the weights times and calculate one hidden layer at a time and adds bias term.
+     * At the end it updates the output y value.
+     */
+    calculateOutput() {
+        let hiddenBiased;
+        for (let i = 0; i < this.weights.length - 1; i++) {
+            let hidden;
+            if (i == 0) {
+                hidden = this.calculateHidden(this.x, this.weights[i], this.activationFunction);
             }
-            return bestWeights;
-        }
-        /**
-         * Loads a deep network model from an input model file.
-         * @param fileName Model file name.
-         */
-        constructor2(fileName) {
-            let input = new FileContents_1.FileContents(fileName);
-            this.loadClassLabels(input);
-            this.hiddenLayerSize = parseInt(input.readLine());
-            this.weights = new Array();
-            for (let i = 0; i < this.hiddenLayerSize + 1; i++) {
-                this.weights.push(this.loadMatrix(input));
+            else {
+                hidden = this.calculateHidden(hiddenBiased, this.weights[i], this.activationFunction);
             }
-            this.activationFunction = this.loadActivationFunction(input);
+            hiddenBiased = hidden.biased();
         }
-        /**
-         * The calculateOutput method loops size of the weights times and calculate one hidden layer at a time and adds bias term.
-         * At the end it updates the output y value.
-         */
-        calculateOutput() {
-            let hiddenBiased;
-            for (let i = 0; i < this.weights.length - 1; i++) {
-                let hidden;
-                if (i == 0) {
-                    hidden = this.calculateHidden(this.x, this.weights[i], this.activationFunction);
-                }
-                else {
-                    hidden = this.calculateHidden(hiddenBiased, this.weights[i], this.activationFunction);
+        this.y = this.weights[this.weights.length - 1].multiplyWithVectorFromRight(hiddenBiased);
+    }
+    saveTxt(fileName) {
+    }
+    /**
+     * Training algorithm for deep network classifier.
+     *
+     * @param train  Training data given to the algorithm.
+     * @param params Parameters of the deep network algorithm. crossValidationRatio and seed are used as parameters.
+     * @throws DiscreteFeaturesNotAllowed Exception for discrete features.
+     */
+    train(train, params) {
+        this.initialize(train);
+        let parameters = params;
+        let partition = new Partition_1.Partition(train, parameters.getCrossValidationRatio(), true);
+        let trainSet = partition.get(1);
+        let validationSet = partition.get(0);
+        let tmpHidden = new Vector_1.Vector(0, 0);
+        let deltaWeights = new Array();
+        let hidden = new Array();
+        let hiddenBiased = new Array();
+        this.activationFunction = parameters.getActivationFunction();
+        this.allocateWeights(parameters);
+        let bestWeights = this.setBestWeights();
+        let bestClassificationPerformance = new ClassificationPerformance_1.ClassificationPerformance(0.0);
+        let epoch = parameters.getEpoch();
+        let learningRate = parameters.getLearningRate();
+        for (let i = 0; i < epoch; i++) {
+            trainSet.shuffle(new Random_1.Random(parameters.getSeed()));
+            for (let j = 0; j < trainSet.size(); j++) {
+                this.createInputVector(trainSet.get(j));
+                hidden = new Array();
+                hiddenBiased = new Array();
+                deltaWeights = new Array();
+                for (let k = 0; k < this.hiddenLayerSize; k++) {
+                    if (k == 0) {
+                        hidden.push(this.calculateHidden(this.x, this.weights[k], this.activationFunction));
+                    }
+                    else {
+                        hidden.push(this.calculateHidden(hiddenBiased[k - 1], this.weights[k], this.activationFunction));
+                    }
+                    hiddenBiased.push(hidden[k].biased());
                 }
-                hiddenBiased = hidden.biased();
-            }
-            this.y = this.weights[this.weights.length - 1].multiplyWithVectorFromRight(hiddenBiased);
-        }
-        saveTxt(fileName) {
-        }
-        /**
-         * Training algorithm for deep network classifier.
-         *
-         * @param train  Training data given to the algorithm.
-         * @param params Parameters of the deep network algorithm. crossValidationRatio and seed are used as parameters.
-         * @throws DiscreteFeaturesNotAllowed Exception for discrete features.
-         */
-        train(train, params) {
-            this.initialize(train);
-            let parameters = params;
-            let partition = new Partition_1.Partition(train, parameters.getCrossValidationRatio(), true);
-            let trainSet = partition.get(1);
-            let validationSet = partition.get(0);
-            let tmpHidden = new Vector_1.Vector(0, 0);
-            let deltaWeights = new Array();
-            let hidden = new Array();
-            let hiddenBiased = new Array();
-            this.activationFunction = parameters.getActivationFunction();
-            this.allocateWeights(parameters);
-            let bestWeights = this.setBestWeights();
-            let bestClassificationPerformance = new ClassificationPerformance_1.ClassificationPerformance(0.0);
-            let epoch = parameters.getEpoch();
-            let learningRate = parameters.getLearningRate();
-            for (let i = 0; i < epoch; i++) {
-                trainSet.shuffle(new Random_1.Random(parameters.getSeed()));
-                for (let j = 0; j < trainSet.size(); j++) {
-                    this.createInputVector(trainSet.get(j));
-                    hidden = new Array();
-                    hiddenBiased = new Array();
-                    deltaWeights = new Array();
-                    for (let k = 0; k < this.hiddenLayerSize; k++) {
-                        if (k == 0) {
-                            hidden.push(this.calculateHidden(this.x, this.weights[k], this.activationFunction));
-                        }
-                        else {
-                            hidden.push(this.calculateHidden(hiddenBiased[k - 1], this.weights[k], this.activationFunction));
-                        }
-                        hiddenBiased.push(hidden[k].biased());
+                let rMinusY = this.calculateRMinusY(trainSet.get(j), hiddenBiased[this.hiddenLayerSize - 1], this.weights[this.weights.length - 1]);
+                deltaWeights.splice(0, 0, new Matrix_1.Matrix(rMinusY, hiddenBiased[this.hiddenLayerSize - 1]));
+                for (let k = this.weights.length - 2; k >= 0; k--) {
+                    let tmph;
+                    if (k == this.weights.length - 2) {
+                        tmph = this.weights[k + 1].multiplyWithVectorFromLeft(rMinusY);
+                    }
+                    else {
+                        tmph = this.weights[k + 1].multiplyWithVectorFromLeft(tmpHidden);
                     }
-                    let rMinusY = this.calculateRMinusY(trainSet.get(j), hiddenBiased[this.hiddenLayerSize - 1], this.weights[this.weights.length - 1]);
-                    deltaWeights.splice(0, 0, new Matrix_1.Matrix(rMinusY, hiddenBiased[this.hiddenLayerSize - 1]));
-                    for (let k = this.weights.length - 2; k >= 0; k--) {
-                        let tmph;
-                        if (k == this.weights.length - 2) {
-                            tmph = this.weights[k + 1].multiplyWithVectorFromLeft(rMinusY);
-                        }
-                        else {
-                            tmph = this.weights[k + 1].multiplyWithVectorFromLeft(tmpHidden);
-                        }
-                        tmph.remove(0);
-                        let activationDerivative;
-                        switch (this.activationFunction) {
-                            case ActivationFunction_1.ActivationFunction.SIGMOID:
-                            default:
-                                let oneMinusHidden = this.calculateOneMinusHidden(hidden[k]);
-                                activationDerivative = oneMinusHidden.elementProduct(hidden[k]);
-                                break;
-                            case ActivationFunction_1.ActivationFunction.TANH:
-                                let one = new Vector_1.Vector(hidden.length, 1.0);
-                                hidden[k].tanh();
-                                activationDerivative = one.difference(hidden[k].elementProduct(hidden[k]));
-                                break;
-                            case ActivationFunction_1.ActivationFunction.RELU:
-                                hidden[k].reluDerivative();
-                                activationDerivative = hidden[k];
-                                break;
-                        }
-                        tmpHidden = tmph.elementProduct(activationDerivative);
-                        if (k == 0) {
-                            deltaWeights.splice(0, 0, new Matrix_1.Matrix(tmpHidden, this.x));
-                        }
-                        else {
-                            deltaWeights.splice(0, 0, new Matrix_1.Matrix(tmpHidden, hiddenBiased[k - 1]));
-                        }
+                    tmph.remove(0);
+                    let activationDerivative;
+                    switch (this.activationFunction) {
+                        case ActivationFunction_1.ActivationFunction.SIGMOID:
+                        default:
+                            let oneMinusHidden = this.calculateOneMinusHidden(hidden[k]);
+                            activationDerivative = oneMinusHidden.elementProduct(hidden[k]);
+                            break;
+                        case ActivationFunction_1.ActivationFunction.TANH:
+                            let one = new Vector_1.Vector(hidden.length, 1.0);
+                            hidden[k].tanh();
+                            activationDerivative = one.difference(hidden[k].elementProduct(hidden[k]));
+                            break;
+                        case ActivationFunction_1.ActivationFunction.RELU:
+                            hidden[k].reluDerivative();
+                            activationDerivative = hidden[k];
+                            break;
                     }
-                    for (let k = 0; k < this.weights.length; k++) {
-                        deltaWeights[k].multiplyWithConstant(learningRate);
-                        this.weights[k].add(deltaWeights[k]);
+                    tmpHidden = tmph.elementProduct(activationDerivative);
+                    if (k == 0) {
+                        deltaWeights.splice(0, 0, new Matrix_1.Matrix(tmpHidden, this.x));
+                    }
+                    else {
+                        deltaWeights.splice(0, 0, new Matrix_1.Matrix(tmpHidden, hiddenBiased[k - 1]));
                     }
                 }
-                let currentClassificationPerformance = this.testClassifier(validationSet);
-                if (currentClassificationPerformance.getAccuracy() > bestClassificationPerformance.getAccuracy()) {
-                    bestClassificationPerformance = currentClassificationPerformance;
-                    bestWeights = this.setBestWeights();
+                for (let k = 0; k < this.weights.length; k++) {
+                    deltaWeights[k].multiplyWithConstant(learningRate);
+                    this.weights[k].add(deltaWeights[k]);
                 }
-                learningRate *= parameters.getEtaDecrease();
             }
-            this.weights = new Array();
-            for (let m of bestWeights) {
-                this.weights.push(m);
+            let currentClassificationPerformance = this.testClassifier(validationSet);
+            if (currentClassificationPerformance.getAccuracy() > bestClassificationPerformance.getAccuracy()) {
+                bestClassificationPerformance = currentClassificationPerformance;
+                bestWeights = this.setBestWeights();
             }
+            learningRate *= parameters.getEtaDecrease();
         }
-        /**
-         * Loads the deep network model from an input file.
-         * @param fileName File name of the deep network model.
-         */
-        loadModel(fileName) {
-            this.constructor2(fileName);
+        this.weights = new Array();
+        for (let m of bestWeights) {
+            this.weights.push(m);
         }
     }
-    exports.DeepNetworkModel = DeepNetworkModel;
-});
+    /**
+     * Loads the deep network model from an input file.
+     * @param fileName File name of the deep network model.
+     */
+    loadModel(fileName) {
+        this.constructor2(fileName);
+    }
+}
+exports.DeepNetworkModel = DeepNetworkModel;
 //# sourceMappingURL=DeepNetworkModel.js.map

package/dist/Model/NeuralNetwork/DeepNetworkModel.js.map

@@ -1 +1 @@
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package/dist/Model/NeuralNetwork/LinearPerceptronModel.js

@@ -1,84 +1,75 @@
-(function (factory) {
-    if (typeof module === "object" && typeof module.exports === "object") {
-        var v = factory(require, exports);
-        if (v !== undefined) module.exports = v;
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.LinearPerceptronModel = void 0;
+const NeuralNetworkModel_1 = require("./NeuralNetworkModel");
+const Matrix_1 = require("nlptoolkit-math/dist/Matrix");
+const ClassificationPerformance_1 = require("../../Performance/ClassificationPerformance");
+const Random_1 = require("nlptoolkit-util/dist/Random");
+const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
+const Partition_1 = require("../../InstanceList/Partition");
+class LinearPerceptronModel extends NeuralNetworkModel_1.NeuralNetworkModel {
+    W;
+    /**
+     * Loads a linear perceptron model from an input model file.
+     * @param fileName Model file name.
+     */
+    constructor2(fileName) {
+        let input = new FileContents_1.FileContents(fileName);
+        this.loadClassLabels(input);
+        this.W = this.loadMatrix(input);
     }
-    else if (typeof define === "function" && define.amd) {
-        define(["require", "exports", "./NeuralNetworkModel", "nlptoolkit-math/dist/Matrix", "../../Performance/ClassificationPerformance", "nlptoolkit-util/dist/Random", "nlptoolkit-util/dist/FileContents", "../../InstanceList/Partition"], factory);
+    /**
+     * The calculateOutput method calculates the {@link Matrix} y by multiplying Matrix W with {@link Vector} x.
+     */
+    calculateOutput() {
+        this.y = this.W.multiplyWithVectorFromRight(this.x);
     }
-})(function (require, exports) {
-    "use strict";
-    Object.defineProperty(exports, "__esModule", { value: true });
-    exports.LinearPerceptronModel = void 0;
-    const NeuralNetworkModel_1 = require("./NeuralNetworkModel");
-    const Matrix_1 = require("nlptoolkit-math/dist/Matrix");
-    const ClassificationPerformance_1 = require("../../Performance/ClassificationPerformance");
-    const Random_1 = require("nlptoolkit-util/dist/Random");
-    const FileContents_1 = require("nlptoolkit-util/dist/FileContents");
-    const Partition_1 = require("../../InstanceList/Partition");
-    class LinearPerceptronModel extends NeuralNetworkModel_1.NeuralNetworkModel {
-        /**
-         * Loads a linear perceptron model from an input model file.
-         * @param fileName Model file name.
-         */
-        constructor2(fileName) {
-            let input = new FileContents_1.FileContents(fileName);
-            this.loadClassLabels(input);
-            this.W = this.loadMatrix(input);
-        }
-        /**
-         * The calculateOutput method calculates the {@link Matrix} y by multiplying Matrix W with {@link Vector} x.
-         */
-        calculateOutput() {
-            this.y = this.W.multiplyWithVectorFromRight(this.x);
-        }
-        saveTxt(fileName) {
-        }
-        /**
-         * Training algorithm for the linear perceptron algorithm. 20 percent of the data is separated as cross-validation
-         * data used for selecting the best weights. 80 percent of the data is used for training the linear perceptron with
-         * gradient descent.
-         *
-         * @param train   Training data given to the algorithm
-         * @param params Parameters of the linear perceptron.
-         */
-        train(train, params) {
-            this.initialize(train);
-            let parameters = params;
-            let partition = new Partition_1.Partition(train, parameters.getCrossValidationRatio(), true);
-            let trainSet = partition.get(1);
-            let validationSet = partition.get(0);
-            this.W = this.allocateLayerWeights(this.K, this.d + 1, new Random_1.Random(parameters.getSeed()));
-            let bestW = this.W.clone();
-            let bestClassificationPerformance = new ClassificationPerformance_1.ClassificationPerformance(0.0);
-            let epoch = parameters.getEpoch();
-            let learningRate = parameters.getLearningRate();
-            for (let i = 0; i < epoch; i++) {
-                trainSet.shuffle(new Random_1.Random(parameters.getSeed()));
-                for (let j = 0; j < trainSet.size(); j++) {
-                    this.createInputVector(trainSet.get(j));
-                    let rMinusY = this.calculateRMinusY(trainSet.get(j), this.x, this.W);
-                    let deltaW = new Matrix_1.Matrix(rMinusY, this.x);
-                    deltaW.multiplyWithConstant(learningRate);
-                    this.W.add(deltaW);
-                }
-                let currentClassificationPerformance = this.testClassifier(validationSet);
-                if (currentClassificationPerformance.getAccuracy() > bestClassificationPerformance.getAccuracy()) {
-                    bestClassificationPerformance = currentClassificationPerformance;
-                    bestW = this.W.clone();
-                }
-                learningRate *= parameters.getEtaDecrease();
+    saveTxt(fileName) {
+    }
+    /**
+     * Training algorithm for the linear perceptron algorithm. 20 percent of the data is separated as cross-validation
+     * data used for selecting the best weights. 80 percent of the data is used for training the linear perceptron with
+     * gradient descent.
+     *
+     * @param train   Training data given to the algorithm
+     * @param params Parameters of the linear perceptron.
+     */
+    train(train, params) {
+        this.initialize(train);
+        let parameters = params;
+        let partition = new Partition_1.Partition(train, parameters.getCrossValidationRatio(), true);
+        let trainSet = partition.get(1);
+        let validationSet = partition.get(0);
+        this.W = this.allocateLayerWeights(this.K, this.d + 1, new Random_1.Random(parameters.getSeed()));
+        let bestW = this.W.clone();
+        let bestClassificationPerformance = new ClassificationPerformance_1.ClassificationPerformance(0.0);
+        let epoch = parameters.getEpoch();
+        let learningRate = parameters.getLearningRate();
+        for (let i = 0; i < epoch; i++) {
+            trainSet.shuffle(new Random_1.Random(parameters.getSeed()));
+            for (let j = 0; j < trainSet.size(); j++) {
+                this.createInputVector(trainSet.get(j));
+                let rMinusY = this.calculateRMinusY(trainSet.get(j), this.x, this.W);
+                let deltaW = new Matrix_1.Matrix(rMinusY, this.x);
+                deltaW.multiplyWithConstant(learningRate);
+                this.W.add(deltaW);
             }
-            this.W = bestW;
-        }
-        /**
-         * Loads the linear perceptron model from an input file.
-         * @param fileName File name of the linear perceptron model.
-         */
-        loadModel(fileName) {
-            this.constructor2(fileName);
+            let currentClassificationPerformance = this.testClassifier(validationSet);
+            if (currentClassificationPerformance.getAccuracy() > bestClassificationPerformance.getAccuracy()) {
+                bestClassificationPerformance = currentClassificationPerformance;
+                bestW = this.W.clone();
+            }
+            learningRate *= parameters.getEtaDecrease();
         }
+        this.W = bestW;
+    }
+    /**
+     * Loads the linear perceptron model from an input file.
+     * @param fileName File name of the linear perceptron model.
+     */
+    loadModel(fileName) {
+        this.constructor2(fileName);
     }
-    exports.LinearPerceptronModel = LinearPerceptronModel;
-});
+}
+exports.LinearPerceptronModel = LinearPerceptronModel;
 //# sourceMappingURL=LinearPerceptronModel.js.map

package/dist/Model/NeuralNetwork/LinearPerceptronModel.js.map

@@ -1 +1 @@
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