molstar 4.2.0 → 4.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1216) hide show
  1. package/build/viewer/molstar.css +1 -1
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/docking-viewer/viewport.d.ts +1 -1
  4. package/lib/apps/docking-viewer/viewport.js +2 -1
  5. package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
  6. package/lib/apps/mesoscale-explorer/app.js +12 -1
  7. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  8. package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
  9. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  10. package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
  13. package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  14. package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
  16. package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +83 -8
  22. package/lib/apps/mesoscale-explorer/index.html +6 -1
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -0
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
  26. package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  27. package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
  28. package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  29. package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
  30. package/lib/apps/viewer/app.d.ts +12 -5
  31. package/lib/apps/viewer/app.js +30 -1
  32. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
  33. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  34. package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
  35. package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
  36. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  37. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
  38. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  39. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
  40. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  41. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
  42. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  43. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
  45. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  46. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
  47. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  48. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
  49. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
  50. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
  51. package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
  54. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  55. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
  58. package/lib/commonjs/apps/viewer/app.d.ts +12 -5
  59. package/lib/commonjs/apps/viewer/app.js +29 -0
  60. package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
  61. package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
  62. package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
  63. package/lib/commonjs/cli/cifschema/util/generate.js +1 -2
  64. package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
  65. package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
  66. package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
  67. package/lib/commonjs/cli/structure-info/helpers.js +2 -3
  68. package/lib/commonjs/cli/structure-info/model.js +11 -12
  69. package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
  70. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
  71. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  72. package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
  73. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  74. package/lib/commonjs/examples/lighting/index.js +2 -1
  75. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
  76. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
  77. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
  78. package/lib/commonjs/examples/task.js +6 -6
  79. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
  80. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
  81. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
  82. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
  83. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
  84. package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
  85. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
  86. package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
  87. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  88. package/lib/commonjs/extensions/anvil/behavior.js +2 -2
  89. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  90. package/lib/commonjs/extensions/anvil/representation.js +3 -3
  91. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
  92. package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
  93. package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
  94. package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
  95. package/lib/commonjs/extensions/assembly-symmetry/prop.js +3 -3
  96. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  97. package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
  98. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +2 -2
  99. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
  100. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  101. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
  102. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +2 -2
  103. package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
  104. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  105. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
  106. package/lib/commonjs/extensions/g3d/data.js +2 -3
  107. package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
  108. package/lib/commonjs/extensions/g3d/model.js +5 -5
  109. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
  110. package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
  111. package/lib/commonjs/extensions/meshes/examples.js +9 -9
  112. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -5
  113. package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
  114. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
  115. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
  116. package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
  117. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
  118. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
  119. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
  120. package/lib/commonjs/extensions/model-export/export.js +2 -2
  121. package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
  122. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
  123. package/lib/commonjs/extensions/mp4-export/encoder.js +2 -3
  124. package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
  125. package/lib/commonjs/extensions/mvs/camera.js +4 -5
  126. package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
  127. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -34
  128. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
  129. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
  130. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
  131. package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
  132. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
  133. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
  134. package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
  135. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
  136. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
  137. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
  138. package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
  139. package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
  140. package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
  141. package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
  142. package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
  143. package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
  144. package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
  145. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  146. package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
  147. package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
  148. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
  149. package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
  150. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  151. package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
  152. package/lib/commonjs/extensions/mvs/load.js +1 -2
  153. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
  154. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
  155. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
  156. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
  157. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -2
  158. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
  159. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
  160. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
  161. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
  162. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
  163. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  164. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
  165. package/lib/commonjs/extensions/sb-ncbr/index.d.ts +8 -0
  166. package/lib/commonjs/extensions/sb-ncbr/index.js +14 -1
  167. package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
  168. package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
  169. package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
  170. package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.d.ts +20 -0
  171. package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.js +89 -0
  172. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.d.ts +26 -0
  173. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +473 -0
  174. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.d.ts +40 -0
  175. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +96 -0
  176. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +146 -0
  177. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.js +28 -0
  178. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.d.ts +12 -0
  179. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +54 -0
  180. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.d.ts +19 -0
  181. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +26 -0
  182. package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.d.ts +29 -0
  183. package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.js +99 -0
  184. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
  185. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
  186. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
  187. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
  188. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
  189. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
  190. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
  191. package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
  192. package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
  193. package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
  194. package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
  195. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +26 -1
  196. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
  197. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
  198. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  199. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  200. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  201. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  202. package/lib/commonjs/mol-canvas3d/passes/dof.d.ts +34 -0
  203. package/lib/commonjs/mol-canvas3d/passes/dof.js +167 -0
  204. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +2 -0
  205. package/lib/commonjs/mol-canvas3d/passes/draw.js +31 -8
  206. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +10 -0
  207. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  208. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
  209. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +9 -0
  210. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -2
  211. package/lib/commonjs/mol-canvas3d/util.js +3 -4
  212. package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
  213. package/lib/commonjs/mol-data/db/column.d.ts +1 -1
  214. package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
  215. package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
  216. package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
  217. package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
  218. package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
  219. package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
  220. package/lib/commonjs/mol-data/int/linked-index.js +1 -2
  221. package/lib/commonjs/mol-data/util/array.js +5 -6
  222. package/lib/commonjs/mol-data/util/buckets.js +1 -2
  223. package/lib/commonjs/mol-data/util/combination.js +2 -2
  224. package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
  225. package/lib/commonjs/mol-data/util/grouping.js +2 -3
  226. package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
  227. package/lib/commonjs/mol-data/util/sort.js +5 -6
  228. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
  229. package/lib/commonjs/mol-geo/geometry/base.js +3 -3
  230. package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
  231. package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
  232. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
  233. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
  234. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  235. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
  236. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
  237. package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
  238. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  239. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  240. package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
  241. package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
  242. package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
  243. package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
  244. package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
  245. package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
  246. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
  247. package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
  248. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
  249. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
  250. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
  251. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
  252. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
  253. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  254. package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
  255. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  256. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
  257. package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
  258. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
  259. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
  260. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
  261. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
  262. package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
  263. package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
  264. package/lib/commonjs/mol-geo/primitive/box.js +3 -4
  265. package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
  266. package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
  267. package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
  268. package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
  269. package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
  270. package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
  271. package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
  272. package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
  273. package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
  274. package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
  275. package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
  276. package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
  277. package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
  278. package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
  279. package/lib/commonjs/mol-geo/primitive/star.js +2 -2
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  1117. package/lib/mol-plugin-state/transforms/data.js +30 -1
  1118. package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
  1119. package/lib/mol-plugin-ui/base.js +2 -1
  1120. package/lib/mol-plugin-ui/controls/icons.d.ts +5 -0
  1121. package/lib/mol-plugin-ui/controls/icons.js +10 -0
  1122. package/lib/mol-plugin-ui/controls/parameters.d.ts +3 -3
  1123. package/lib/mol-plugin-ui/controls.js +1 -1
  1124. package/lib/mol-plugin-ui/left-panel.d.ts +0 -1
  1125. package/lib/mol-plugin-ui/plugin.js +3 -2
  1126. package/lib/mol-plugin-ui/skin/base/components/controls.scss +6 -0
  1127. package/lib/mol-plugin-ui/spec.d.ts +10 -10
  1128. package/lib/mol-plugin-ui/spec.js +1 -1
  1129. package/lib/mol-plugin-ui/state/apply-action.d.ts +1 -1
  1130. package/lib/mol-plugin-ui/state/update-transform.d.ts +1 -1
  1131. package/lib/mol-plugin-ui/structure/quick-styles.d.ts +2 -1
  1132. package/lib/mol-plugin-ui/structure/quick-styles.js +5 -2
  1133. package/lib/mol-plugin-ui/structure/selection.d.ts +2 -2
  1134. package/lib/mol-plugin-ui/viewport/simple-settings.js +3 -0
  1135. package/lib/mol-repr/representation.d.ts +3 -3
  1136. package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
  1137. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  1138. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  1139. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  1140. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  1141. package/lib/mol-repr/structure/complex-visual.d.ts +5 -0
  1142. package/lib/mol-repr/structure/params.d.ts +5 -0
  1143. package/lib/mol-repr/structure/registry.d.ts +11 -0
  1144. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  1145. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  1146. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  1147. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  1148. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  1149. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  1150. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  1151. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  1152. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  1153. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  1154. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  1155. package/lib/mol-repr/structure/units-visual.d.ts +5 -0
  1156. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  1157. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  1158. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  1159. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  1160. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  1161. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  1162. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  1163. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  1164. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  1165. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  1166. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  1167. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  1168. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  1169. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  1170. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  1171. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  1172. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  1173. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  1174. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  1175. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  1176. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  1177. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  1178. package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +60 -60
  1179. package/lib/mol-repr/volume/direct-volume.d.ts +48 -45
  1180. package/lib/mol-repr/volume/isosurface.d.ts +95 -90
  1181. package/lib/mol-repr/volume/registry.d.ts +63 -60
  1182. package/lib/mol-repr/volume/segment.d.ts +80 -75
  1183. package/lib/mol-repr/volume/slice.d.ts +45 -45
  1184. package/lib/mol-script/language/symbol-table/core.d.ts +1 -1
  1185. package/lib/mol-state/object.d.ts +4 -4
  1186. package/lib/mol-state/state.d.ts +4 -4
  1187. package/lib/mol-state/transform.d.ts +1 -1
  1188. package/lib/mol-state/transformer.d.ts +1 -1
  1189. package/lib/mol-task/util/scheduler.d.ts +0 -1
  1190. package/lib/mol-theme/color/atom-id.d.ts +2 -2
  1191. package/lib/mol-theme/color/chain-id.d.ts +2 -2
  1192. package/lib/mol-theme/color/element-index.d.ts +2 -2
  1193. package/lib/mol-theme/color/entity-id.d.ts +2 -2
  1194. package/lib/mol-theme/color/entity-source.d.ts +2 -2
  1195. package/lib/mol-theme/color/external-volume.d.ts +2 -2
  1196. package/lib/mol-theme/color/model-index.d.ts +2 -2
  1197. package/lib/mol-theme/color/operator-hkl.d.ts +2 -2
  1198. package/lib/mol-theme/color/operator-name.d.ts +2 -2
  1199. package/lib/mol-theme/color/polymer-id.d.ts +2 -2
  1200. package/lib/mol-theme/color/polymer-index.d.ts +2 -2
  1201. package/lib/mol-theme/color/structure-index.d.ts +2 -2
  1202. package/lib/mol-theme/color/trajectory-index.d.ts +2 -2
  1203. package/lib/mol-theme/color/unit-index.d.ts +2 -2
  1204. package/lib/mol-theme/color/volume-segment.d.ts +2 -2
  1205. package/lib/mol-theme/color.d.ts +16 -16
  1206. package/lib/mol-theme/theme.d.ts +3 -3
  1207. package/lib/mol-util/color/palette.d.ts +4 -3
  1208. package/lib/mol-util/color/scale.d.ts +2 -1
  1209. package/lib/mol-util/data-source.d.ts +0 -1
  1210. package/lib/mol-util/nodejs-shims.d.ts +1 -1
  1211. package/lib/servers/model/config.d.ts +4 -4
  1212. package/lib/servers/model/utils/tar.d.ts +0 -1
  1213. package/lib/servers/volume/common/binary-schema.d.ts +0 -1
  1214. package/lib/servers/volume/common/data-format.d.ts +0 -1
  1215. package/lib/servers/volume/config.d.ts +1 -5
  1216. package/package.json +18 -16
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "molstar",
3
- "version": "4.2.0",
3
+ "version": "4.4.0",
4
4
  "description": "A comprehensive macromolecular library.",
5
5
  "homepage": "https://github.com/molstar/molstar#readme",
6
6
  "repository": {
@@ -106,7 +106,9 @@
106
106
  "Yakov Pechersky <ffxen158@gmail.com>",
107
107
  "Christian Dominguez <christian.99dominguez@gmail.com>",
108
108
  "Cai Huiyu <szmun.caihy@gmail.com>",
109
- "Ryan DiRisio <rjdiris@gmail.com>"
109
+ "Ryan DiRisio <rjdiris@gmail.com>",
110
+ "Dušan Veľký <dvelky@mail.muni.cz>",
111
+ "Neli Fonseca <neli@ebi.ac.uk>"
110
112
  ],
111
113
  "license": "MIT",
112
114
  "devDependencies": {
@@ -114,15 +116,15 @@
114
116
  "@types/gl": "^6.0.5",
115
117
  "@types/pngjs": "^6.0.5",
116
118
  "@types/jest": "^29.5.12",
117
- "@types/react": "^18.3.1",
119
+ "@types/react": "^18.3.3",
118
120
  "@types/react-dom": "^18.3.0",
119
- "@typescript-eslint/eslint-plugin": "^7.8.0",
120
- "@typescript-eslint/parser": "^7.8.0",
121
+ "@typescript-eslint/eslint-plugin": "^7.14.1",
122
+ "@typescript-eslint/parser": "^7.14.1",
121
123
  "benchmark": "^2.1.4",
122
124
  "concurrently": "^8.2.2",
123
125
  "cpx2": "^7.0.1",
124
126
  "crypto-browserify": "^3.12.0",
125
- "css-loader": "^7.1.1",
127
+ "css-loader": "^7.1.2",
126
128
  "eslint": "^8.57.0",
127
129
  "extra-watch-webpack-plugin": "^1.0.3",
128
130
  "file-loader": "^6.2.0",
@@ -135,14 +137,14 @@
135
137
  "raw-loader": "^4.0.2",
136
138
  "react": "^18.3.1",
137
139
  "react-dom": "^18.3.1",
138
- "sass": "^1.76.0",
140
+ "sass": "^1.77.6",
139
141
  "sass-loader": "^14.2.1",
140
- "simple-git": "^3.24.0",
142
+ "simple-git": "^3.25.0",
141
143
  "stream-browserify": "^3.0.0",
142
144
  "style-loader": "^4.0.0",
143
- "ts-jest": "^29.1.2",
144
- "typescript": "^5.4.5",
145
- "webpack": "^5.91.0",
145
+ "ts-jest": "^29.1.5",
146
+ "typescript": "^5.5.2",
147
+ "webpack": "^5.92.1",
146
148
  "webpack-cli": "^5.1.4"
147
149
  },
148
150
  "dependencies": {
@@ -150,9 +152,9 @@
150
152
  "@types/benchmark": "^2.1.5",
151
153
  "@types/compression": "1.7.5",
152
154
  "@types/express": "^4.17.21",
153
- "@types/node": "^18.19.31",
155
+ "@types/node": "^18.19.39",
154
156
  "@types/node-fetch": "^2.6.11",
155
- "@types/swagger-ui-dist": "3.30.4",
157
+ "@types/swagger-ui-dist": "3.30.5",
156
158
  "argparse": "^2.0.1",
157
159
  "body-parser": "^1.20.2",
158
160
  "compression": "^1.7.4",
@@ -160,13 +162,13 @@
160
162
  "express": "^4.19.2",
161
163
  "h264-mp4-encoder": "^1.0.12",
162
164
  "immer": "^10.1.1",
163
- "immutable": "^4.3.5",
165
+ "immutable": "^4.3.6",
164
166
  "io-ts": "^2.2.21",
165
167
  "node-fetch": "^2.7.0",
166
168
  "react-markdown": "^9.0.1",
167
169
  "rxjs": "^7.8.1",
168
- "swagger-ui-dist": "^5.17.2",
169
- "tslib": "^2.6.2",
170
+ "swagger-ui-dist": "^5.17.14",
171
+ "tslib": "^2.6.3",
170
172
  "util.promisify": "^1.1.2",
171
173
  "xhr2": "^0.2.1"
172
174
  },