molstar 4.2.0 → 4.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1216) hide show
  1. package/build/viewer/molstar.css +1 -1
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/docking-viewer/viewport.d.ts +1 -1
  4. package/lib/apps/docking-viewer/viewport.js +2 -1
  5. package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
  6. package/lib/apps/mesoscale-explorer/app.js +12 -1
  7. package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  8. package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
  9. package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  10. package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
  11. package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  12. package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
  13. package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  14. package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
  15. package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
  16. package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  17. package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
  18. package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  19. package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
  20. package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
  21. package/lib/apps/mesoscale-explorer/data/state.js +83 -8
  22. package/lib/apps/mesoscale-explorer/index.html +6 -1
  23. package/lib/apps/mesoscale-explorer/style.scss +33 -0
  24. package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  25. package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
  26. package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  27. package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
  28. package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  29. package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
  30. package/lib/apps/viewer/app.d.ts +12 -5
  31. package/lib/apps/viewer/app.js +30 -1
  32. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
  33. package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
  34. package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
  35. package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
  36. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
  37. package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
  38. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
  39. package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
  40. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
  41. package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
  42. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
  43. package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
  44. package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
  45. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
  46. package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
  47. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
  48. package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
  49. package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
  50. package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
  51. package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
  52. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
  53. package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
  54. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
  55. package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
  56. package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
  57. package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
  58. package/lib/commonjs/apps/viewer/app.d.ts +12 -5
  59. package/lib/commonjs/apps/viewer/app.js +29 -0
  60. package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
  61. package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
  62. package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
  63. package/lib/commonjs/cli/cifschema/util/generate.js +1 -2
  64. package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
  65. package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
  66. package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
  67. package/lib/commonjs/cli/structure-info/helpers.js +2 -3
  68. package/lib/commonjs/cli/structure-info/model.js +11 -12
  69. package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
  70. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
  71. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  72. package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
  73. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  74. package/lib/commonjs/examples/lighting/index.js +2 -1
  75. package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
  76. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
  77. package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
  78. package/lib/commonjs/examples/task.js +6 -6
  79. package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
  80. package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
  81. package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
  82. package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
  83. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
  84. package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
  85. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
  86. package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
  87. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  88. package/lib/commonjs/extensions/anvil/behavior.js +2 -2
  89. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  90. package/lib/commonjs/extensions/anvil/representation.js +3 -3
  91. package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
  92. package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
  93. package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
  94. package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
  95. package/lib/commonjs/extensions/assembly-symmetry/prop.js +3 -3
  96. package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
  97. package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
  98. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +2 -2
  99. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
  100. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  101. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
  102. package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +2 -2
  103. package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
  104. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
  105. package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
  106. package/lib/commonjs/extensions/g3d/data.js +2 -3
  107. package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
  108. package/lib/commonjs/extensions/g3d/model.js +5 -5
  109. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
  110. package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
  111. package/lib/commonjs/extensions/meshes/examples.js +9 -9
  112. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -5
  113. package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
  114. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
  115. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
  116. package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
  117. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
  118. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
  119. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
  120. package/lib/commonjs/extensions/model-export/export.js +2 -2
  121. package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
  122. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
  123. package/lib/commonjs/extensions/mp4-export/encoder.js +2 -3
  124. package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
  125. package/lib/commonjs/extensions/mvs/camera.js +4 -5
  126. package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
  127. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -34
  128. package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
  129. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
  130. package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
  131. package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
  132. package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
  133. package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
  134. package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
  135. package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
  136. package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
  137. package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
  138. package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
  139. package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
  140. package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
  141. package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
  142. package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
  143. package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
  144. package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
  145. package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
  146. package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
  147. package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
  148. package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
  149. package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
  150. package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
  151. package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
  152. package/lib/commonjs/extensions/mvs/load.js +1 -2
  153. package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
  154. package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
  155. package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
  156. package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
  157. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -2
  158. package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
  159. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
  160. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
  161. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
  162. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
  163. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  164. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
  165. package/lib/commonjs/extensions/sb-ncbr/index.d.ts +8 -0
  166. package/lib/commonjs/extensions/sb-ncbr/index.js +14 -1
  167. package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
  168. package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
  169. package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
  170. package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.d.ts +20 -0
  171. package/lib/commonjs/extensions/sb-ncbr/tunnels/actions.js +89 -0
  172. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.d.ts +26 -0
  173. package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +473 -0
  174. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.d.ts +40 -0
  175. package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +96 -0
  176. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +146 -0
  177. package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.js +28 -0
  178. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.d.ts +12 -0
  179. package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +54 -0
  180. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.d.ts +19 -0
  181. package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +26 -0
  182. package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.d.ts +29 -0
  183. package/lib/commonjs/extensions/sb-ncbr/tunnels/representation.js +99 -0
  184. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
  185. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
  186. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
  187. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
  188. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
  189. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
  190. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
  191. package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
  192. package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
  193. package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
  194. package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
  195. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +26 -1
  196. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
  197. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
  198. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  199. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  200. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  201. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  202. package/lib/commonjs/mol-canvas3d/passes/dof.d.ts +34 -0
  203. package/lib/commonjs/mol-canvas3d/passes/dof.js +167 -0
  204. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +2 -0
  205. package/lib/commonjs/mol-canvas3d/passes/draw.js +31 -8
  206. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +10 -0
  207. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
  208. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
  209. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +9 -0
  210. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +12 -2
  211. package/lib/commonjs/mol-canvas3d/util.js +3 -4
  212. package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
  213. package/lib/commonjs/mol-data/db/column.d.ts +1 -1
  214. package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
  215. package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
  216. package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
  217. package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
  218. package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
  219. package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
  220. package/lib/commonjs/mol-data/int/linked-index.js +1 -2
  221. package/lib/commonjs/mol-data/util/array.js +5 -6
  222. package/lib/commonjs/mol-data/util/buckets.js +1 -2
  223. package/lib/commonjs/mol-data/util/combination.js +2 -2
  224. package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
  225. package/lib/commonjs/mol-data/util/grouping.js +2 -3
  226. package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
  227. package/lib/commonjs/mol-data/util/sort.js +5 -6
  228. package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
  229. package/lib/commonjs/mol-geo/geometry/base.js +3 -3
  230. package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
  231. package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
  232. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
  233. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
  234. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
  235. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
  236. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
  237. package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
  238. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
  239. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  240. package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
  241. package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
  242. package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
  243. package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
  244. package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
  245. package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
  246. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
  247. package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
  248. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
  249. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
  250. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
  251. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
  252. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
  253. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  254. package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
  255. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  256. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
  257. package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
  258. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
  259. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
  260. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
  261. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
  262. package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
  263. package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
  264. package/lib/commonjs/mol-geo/primitive/box.js +3 -4
  265. package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
  266. package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
  267. package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
  268. package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
  269. package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
  270. package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
  271. package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
  272. package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
  273. package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
  274. package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
  275. package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
  276. package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
  277. package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
  278. package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
  279. package/lib/commonjs/mol-geo/primitive/star.js +2 -2
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  1117. package/lib/mol-plugin-state/transforms/data.js +30 -1
  1118. package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
  1119. package/lib/mol-plugin-ui/base.js +2 -1
  1120. package/lib/mol-plugin-ui/controls/icons.d.ts +5 -0
  1121. package/lib/mol-plugin-ui/controls/icons.js +10 -0
  1122. package/lib/mol-plugin-ui/controls/parameters.d.ts +3 -3
  1123. package/lib/mol-plugin-ui/controls.js +1 -1
  1124. package/lib/mol-plugin-ui/left-panel.d.ts +0 -1
  1125. package/lib/mol-plugin-ui/plugin.js +3 -2
  1126. package/lib/mol-plugin-ui/skin/base/components/controls.scss +6 -0
  1127. package/lib/mol-plugin-ui/spec.d.ts +10 -10
  1128. package/lib/mol-plugin-ui/spec.js +1 -1
  1129. package/lib/mol-plugin-ui/state/apply-action.d.ts +1 -1
  1130. package/lib/mol-plugin-ui/state/update-transform.d.ts +1 -1
  1131. package/lib/mol-plugin-ui/structure/quick-styles.d.ts +2 -1
  1132. package/lib/mol-plugin-ui/structure/quick-styles.js +5 -2
  1133. package/lib/mol-plugin-ui/structure/selection.d.ts +2 -2
  1134. package/lib/mol-plugin-ui/viewport/simple-settings.js +3 -0
  1135. package/lib/mol-repr/representation.d.ts +3 -3
  1136. package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
  1137. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  1138. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  1139. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  1140. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  1141. package/lib/mol-repr/structure/complex-visual.d.ts +5 -0
  1142. package/lib/mol-repr/structure/params.d.ts +5 -0
  1143. package/lib/mol-repr/structure/registry.d.ts +11 -0
  1144. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  1145. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  1146. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  1147. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  1148. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  1149. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  1150. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  1151. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  1152. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  1153. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  1154. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  1155. package/lib/mol-repr/structure/units-visual.d.ts +5 -0
  1156. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  1157. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  1158. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  1159. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  1160. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  1161. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  1162. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  1163. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  1164. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  1165. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  1166. package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
  1167. package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
  1168. package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
  1169. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  1170. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  1171. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  1172. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  1173. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  1174. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  1175. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  1176. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  1177. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  1178. package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +60 -60
  1179. package/lib/mol-repr/volume/direct-volume.d.ts +48 -45
  1180. package/lib/mol-repr/volume/isosurface.d.ts +95 -90
  1181. package/lib/mol-repr/volume/registry.d.ts +63 -60
  1182. package/lib/mol-repr/volume/segment.d.ts +80 -75
  1183. package/lib/mol-repr/volume/slice.d.ts +45 -45
  1184. package/lib/mol-script/language/symbol-table/core.d.ts +1 -1
  1185. package/lib/mol-state/object.d.ts +4 -4
  1186. package/lib/mol-state/state.d.ts +4 -4
  1187. package/lib/mol-state/transform.d.ts +1 -1
  1188. package/lib/mol-state/transformer.d.ts +1 -1
  1189. package/lib/mol-task/util/scheduler.d.ts +0 -1
  1190. package/lib/mol-theme/color/atom-id.d.ts +2 -2
  1191. package/lib/mol-theme/color/chain-id.d.ts +2 -2
  1192. package/lib/mol-theme/color/element-index.d.ts +2 -2
  1193. package/lib/mol-theme/color/entity-id.d.ts +2 -2
  1194. package/lib/mol-theme/color/entity-source.d.ts +2 -2
  1195. package/lib/mol-theme/color/external-volume.d.ts +2 -2
  1196. package/lib/mol-theme/color/model-index.d.ts +2 -2
  1197. package/lib/mol-theme/color/operator-hkl.d.ts +2 -2
  1198. package/lib/mol-theme/color/operator-name.d.ts +2 -2
  1199. package/lib/mol-theme/color/polymer-id.d.ts +2 -2
  1200. package/lib/mol-theme/color/polymer-index.d.ts +2 -2
  1201. package/lib/mol-theme/color/structure-index.d.ts +2 -2
  1202. package/lib/mol-theme/color/trajectory-index.d.ts +2 -2
  1203. package/lib/mol-theme/color/unit-index.d.ts +2 -2
  1204. package/lib/mol-theme/color/volume-segment.d.ts +2 -2
  1205. package/lib/mol-theme/color.d.ts +16 -16
  1206. package/lib/mol-theme/theme.d.ts +3 -3
  1207. package/lib/mol-util/color/palette.d.ts +4 -3
  1208. package/lib/mol-util/color/scale.d.ts +2 -1
  1209. package/lib/mol-util/data-source.d.ts +0 -1
  1210. package/lib/mol-util/nodejs-shims.d.ts +1 -1
  1211. package/lib/servers/model/config.d.ts +4 -4
  1212. package/lib/servers/model/utils/tar.d.ts +0 -1
  1213. package/lib/servers/volume/common/binary-schema.d.ts +0 -1
  1214. package/lib/servers/volume/common/data-format.d.ts +0 -1
  1215. package/lib/servers/volume/config.d.ts +1 -5
  1216. package/package.json +18 -16
@@ -5,7 +5,13 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.applyTextureMeshSubstanceSmoothing = exports.applyTextureMeshEmissiveSmoothing = exports.applyTextureMeshTransparencySmoothing = exports.applyTextureMeshOverpaintSmoothing = exports.applyTextureMeshColorSmoothing = exports.calcTextureMeshColorSmoothing = exports.ColorNormalizeSchema = exports.ColorAccumulateSchema = void 0;
8
+ exports.ColorNormalizeSchema = exports.ColorAccumulateSchema = void 0;
9
+ exports.calcTextureMeshColorSmoothing = calcTextureMeshColorSmoothing;
10
+ exports.applyTextureMeshColorSmoothing = applyTextureMeshColorSmoothing;
11
+ exports.applyTextureMeshOverpaintSmoothing = applyTextureMeshOverpaintSmoothing;
12
+ exports.applyTextureMeshTransparencySmoothing = applyTextureMeshTransparencySmoothing;
13
+ exports.applyTextureMeshEmissiveSmoothing = applyTextureMeshEmissiveSmoothing;
14
+ exports.applyTextureMeshSubstanceSmoothing = applyTextureMeshSubstanceSmoothing;
9
15
  const mol_util_1 = require("../../../mol-util");
10
16
  const renderable_1 = require("../../../mol-gl/renderable");
11
17
  const texture_1 = require("../../../mol-gl/webgl/texture");
@@ -317,7 +323,6 @@ function calcTextureMeshColorSmoothing(input, resolution, stride, webgl, texture
317
323
  // printTextureImage(readTexture(webgl, texture), { scale: 0.75 });
318
324
  return { texture, gridDim, gridTexDim: linear_algebra_1.Vec2.create(width, height), gridTransform, type };
319
325
  }
320
- exports.calcTextureMeshColorSmoothing = calcTextureMeshColorSmoothing;
321
326
  //
322
327
  const ColorSmoothingRgbName = 'color-smoothing-rgb';
323
328
  const ColorSmoothingRgbaName = 'color-smoothing-rgba';
@@ -353,7 +358,6 @@ function applyTextureMeshColorSmoothing(values, resolution, stride, webgl, color
353
358
  mol_util_1.ValueCell.update(values.uColorGridDim, smoothingData.gridDim);
354
359
  mol_util_1.ValueCell.update(values.uColorGridTransform, smoothingData.gridTransform);
355
360
  }
356
- exports.applyTextureMeshColorSmoothing = applyTextureMeshColorSmoothing;
357
361
  function isSupportedOverpaintType(x) {
358
362
  return x === 'groupInstance';
359
363
  }
@@ -385,7 +389,6 @@ function applyTextureMeshOverpaintSmoothing(values, resolution, stride, webgl, c
385
389
  mol_util_1.ValueCell.update(values.uOverpaintGridDim, smoothingData.gridDim);
386
390
  mol_util_1.ValueCell.update(values.uOverpaintGridTransform, smoothingData.gridTransform);
387
391
  }
388
- exports.applyTextureMeshOverpaintSmoothing = applyTextureMeshOverpaintSmoothing;
389
392
  function isSupportedTransparencyType(x) {
390
393
  return x === 'groupInstance';
391
394
  }
@@ -417,7 +420,6 @@ function applyTextureMeshTransparencySmoothing(values, resolution, stride, webgl
417
420
  mol_util_1.ValueCell.update(values.uTransparencyGridDim, smoothingData.gridDim);
418
421
  mol_util_1.ValueCell.update(values.uTransparencyGridTransform, smoothingData.gridTransform);
419
422
  }
420
- exports.applyTextureMeshTransparencySmoothing = applyTextureMeshTransparencySmoothing;
421
423
  function isSupportedEmissiveType(x) {
422
424
  return x === 'groupInstance';
423
425
  }
@@ -449,7 +451,6 @@ function applyTextureMeshEmissiveSmoothing(values, resolution, stride, webgl, co
449
451
  mol_util_1.ValueCell.update(values.uEmissiveGridDim, smoothingData.gridDim);
450
452
  mol_util_1.ValueCell.update(values.uEmissiveGridTransform, smoothingData.gridTransform);
451
453
  }
452
- exports.applyTextureMeshEmissiveSmoothing = applyTextureMeshEmissiveSmoothing;
453
454
  function isSupportedSubstanceType(x) {
454
455
  return x === 'groupInstance';
455
456
  }
@@ -481,4 +482,3 @@ function applyTextureMeshSubstanceSmoothing(values, resolution, stride, webgl, c
481
482
  mol_util_1.ValueCell.update(values.uSubstanceGridDim, smoothingData.gridDim);
482
483
  mol_util_1.ValueCell.update(values.uSubstanceGridTransform, smoothingData.gridTransform);
483
484
  }
484
- exports.applyTextureMeshSubstanceSmoothing = applyTextureMeshSubstanceSmoothing;
@@ -48,6 +48,7 @@ export declare namespace TextureMesh {
48
48
  flipSided: PD.BooleanParam;
49
49
  flatShaded: PD.BooleanParam;
50
50
  ignoreLight: PD.BooleanParam;
51
+ celShaded: PD.BooleanParam;
51
52
  xrayShaded: PD.Select<boolean | "inverted">;
52
53
  transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
53
54
  bumpFrequency: PD.Numeric;
@@ -93,6 +93,7 @@ var TextureMesh;
93
93
  flipSided: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory),
94
94
  flatShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory),
95
95
  ignoreLight: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory),
96
+ celShaded: param_definition_1.ParamDefinition.Boolean(false, base_1.BaseGeometry.ShadingCategory),
96
97
  xrayShaded: param_definition_1.ParamDefinition.Select(false, [[false, 'Off'], [true, 'On'], ['inverted', 'Inverted']], base_1.BaseGeometry.ShadingCategory),
97
98
  transparentBackfaces: param_definition_1.ParamDefinition.Select('off', param_definition_1.ParamDefinition.arrayToOptions(['off', 'on', 'opaque']), base_1.BaseGeometry.ShadingCategory),
98
99
  bumpFrequency: param_definition_1.ParamDefinition.Numeric(0, { min: 0, max: 10, step: 0.1 }, base_1.BaseGeometry.ShadingCategory),
@@ -184,6 +185,7 @@ var TextureMesh;
184
185
  dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded),
185
186
  dFlipSided: mol_util_1.ValueCell.create(props.flipSided),
186
187
  dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight),
188
+ dCelShaded: mol_util_1.ValueCell.create(props.celShaded),
187
189
  dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded === 'inverted' ? 'inverted' : props.xrayShaded === true ? 'on' : 'off'),
188
190
  dTransparentBackfaces: mol_util_1.ValueCell.create(props.transparentBackfaces),
189
191
  uBumpFrequency: mol_util_1.ValueCell.create(props.bumpFrequency),
@@ -202,6 +204,7 @@ var TextureMesh;
202
204
  mol_util_1.ValueCell.updateIfChanged(values.dFlatShaded, props.flatShaded);
203
205
  mol_util_1.ValueCell.updateIfChanged(values.dFlipSided, props.flipSided);
204
206
  mol_util_1.ValueCell.updateIfChanged(values.dIgnoreLight, props.ignoreLight);
207
+ mol_util_1.ValueCell.updateIfChanged(values.dCelShaded, props.celShaded);
205
208
  mol_util_1.ValueCell.updateIfChanged(values.dXrayShaded, props.xrayShaded === 'inverted' ? 'inverted' : props.xrayShaded === true ? 'on' : 'off');
206
209
  mol_util_1.ValueCell.updateIfChanged(values.dTransparentBackfaces, props.transparentBackfaces);
207
210
  mol_util_1.ValueCell.updateIfChanged(values.uBumpFrequency, props.bumpFrequency);
@@ -5,7 +5,10 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.updateTransformData = exports.fillIdentityTransform = exports.createIdentityTransform = exports.createTransform = void 0;
8
+ exports.createTransform = createTransform;
9
+ exports.createIdentityTransform = createIdentityTransform;
10
+ exports.fillIdentityTransform = fillIdentityTransform;
11
+ exports.updateTransformData = updateTransformData;
9
12
  const mol_util_1 = require("../../mol-util");
10
13
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
11
14
  const array_1 = require("../../mol-util/array");
@@ -54,20 +57,17 @@ function createTransform(transformArray, instanceCount, invariantBoundingSphere,
54
57
  updateTransformData(transformData, invariantBoundingSphere, cellSize, batchSize);
55
58
  return transformData;
56
59
  }
57
- exports.createTransform = createTransform;
58
60
  const identityTransform = new Float32Array(16);
59
61
  linear_algebra_1.Mat4.toArray(linear_algebra_1.Mat4.identity(), identityTransform, 0);
60
62
  function createIdentityTransform(transformData) {
61
63
  return createTransform(new Float32Array(identityTransform), 1, undefined, 0, 0, transformData);
62
64
  }
63
- exports.createIdentityTransform = createIdentityTransform;
64
65
  function fillIdentityTransform(transform, count) {
65
66
  for (let i = 0; i < count; i++) {
66
67
  transform.set(identityTransform, i * 16);
67
68
  }
68
69
  return transform;
69
70
  }
70
- exports.fillIdentityTransform = fillIdentityTransform;
71
71
  /**
72
72
  * updates per-instance transform calculated for instance `i` as
73
73
  * `aTransform[i] = matrix * transform[i] * extraTransform[i]`
@@ -101,4 +101,3 @@ function updateTransformData(transformData, invariantBoundingSphere, cellSize, b
101
101
  mol_util_1.ValueCell.update(transformData.aTransform, aTransform);
102
102
  }
103
103
  }
104
- exports.updateTransformData = updateTransformData;
@@ -5,7 +5,11 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.createEmptyTransparency = exports.createTransparency = exports.clearTransparency = exports.getTransparencyAverage = exports.applyTransparencyValue = void 0;
8
+ exports.applyTransparencyValue = applyTransparencyValue;
9
+ exports.getTransparencyAverage = getTransparencyAverage;
10
+ exports.clearTransparency = clearTransparency;
11
+ exports.createTransparency = createTransparency;
12
+ exports.createEmptyTransparency = createEmptyTransparency;
9
13
  const value_cell_1 = require("../../mol-util/value-cell");
10
14
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
11
15
  const util_1 = require("../../mol-gl/renderable/util");
@@ -16,7 +20,6 @@ function applyTransparencyValue(array, start, end, value) {
16
20
  }
17
21
  return true;
18
22
  }
19
- exports.applyTransparencyValue = applyTransparencyValue;
20
23
  function getTransparencyAverage(array, count) {
21
24
  if (count === 0 || array.length < count)
22
25
  return 0;
@@ -26,11 +29,9 @@ function getTransparencyAverage(array, count) {
26
29
  }
27
30
  return sum / (255 * count);
28
31
  }
29
- exports.getTransparencyAverage = getTransparencyAverage;
30
32
  function clearTransparency(array, start, end) {
31
33
  array.fill(0, start, end);
32
34
  }
33
- exports.clearTransparency = clearTransparency;
34
35
  function createTransparency(count, type, transparencyData) {
35
36
  const transparency = (0, util_1.createTextureImage)(Math.max(1, count), 1, Uint8Array, transparencyData && transparencyData.tTransparency.ref.value.array);
36
37
  if (transparencyData) {
@@ -55,7 +56,6 @@ function createTransparency(count, type, transparencyData) {
55
56
  };
56
57
  }
57
58
  }
58
- exports.createTransparency = createTransparency;
59
59
  const emptyTransparencyTexture = { array: new Uint8Array(1), width: 1, height: 1 };
60
60
  function createEmptyTransparency(transparencyData) {
61
61
  if (transparencyData) {
@@ -77,4 +77,3 @@ function createEmptyTransparency(transparencyData) {
77
77
  };
78
78
  }
79
79
  }
80
- exports.createEmptyTransparency = createEmptyTransparency;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.BoxCage = exports.PerforatedBox = exports.Box = void 0;
8
+ exports.Box = Box;
9
+ exports.PerforatedBox = PerforatedBox;
10
+ exports.BoxCage = BoxCage;
9
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
12
  const primitive_1 = require("./primitive");
11
13
  const polygon_1 = require("./polygon");
@@ -62,14 +64,12 @@ function Box() {
62
64
  box = createBox(false);
63
65
  return box;
64
66
  }
65
- exports.Box = Box;
66
67
  let perforatedBox;
67
68
  function PerforatedBox() {
68
69
  if (!perforatedBox)
69
70
  perforatedBox = createBox(true);
70
71
  return perforatedBox;
71
72
  }
72
- exports.PerforatedBox = PerforatedBox;
73
73
  let boxCage;
74
74
  function BoxCage() {
75
75
  if (!boxCage) {
@@ -90,4 +90,3 @@ function BoxCage() {
90
90
  }
91
91
  return boxCage;
92
92
  }
93
- exports.BoxCage = BoxCage;
@@ -5,19 +5,19 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.transformCage = exports.cloneCage = exports.createCage = void 0;
8
+ exports.createCage = createCage;
9
+ exports.cloneCage = cloneCage;
10
+ exports.transformCage = transformCage;
9
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
12
  function createCage(vertices, edges) {
11
13
  return { vertices, edges };
12
14
  }
13
- exports.createCage = createCage;
14
15
  function cloneCage(cage) {
15
16
  return {
16
17
  vertices: new Float32Array(cage.vertices),
17
18
  edges: new Uint32Array(cage.edges)
18
19
  };
19
20
  }
20
- exports.cloneCage = cloneCage;
21
21
  const tmpV = linear_algebra_1.Vec3.zero();
22
22
  /** Transform primitive in-place */
23
23
  function transformCage(cage, t) {
@@ -29,4 +29,3 @@ function transformCage(cage, t) {
29
29
  }
30
30
  return cage;
31
31
  }
32
- exports.transformCage = transformCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Circle = exports.DefaultCircleProps = void 0;
8
+ exports.DefaultCircleProps = void 0;
9
+ exports.Circle = Circle;
9
10
  exports.DefaultCircleProps = {
10
11
  radius: 1,
11
12
  segments: 36,
@@ -64,4 +65,3 @@ function Circle(props) {
64
65
  }
65
66
  return { vertices, normals, indices };
66
67
  }
67
- exports.Circle = Circle;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Cylinder = exports.DefaultCylinderProps = void 0;
8
+ exports.DefaultCylinderProps = void 0;
9
+ exports.Cylinder = Cylinder;
9
10
  // adapted from three.js, MIT License Copyright 2010-2018 three.js authors
10
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
11
12
  exports.DefaultCylinderProps = {
@@ -124,4 +125,3 @@ function Cylinder(props) {
124
125
  }
125
126
  }
126
127
  }
127
- exports.Cylinder = Cylinder;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.DodecahedronCage = exports.Dodecahedron = exports.dodecahedronFaces = exports.dodecahedronVertices = void 0;
8
+ exports.dodecahedronFaces = exports.dodecahedronVertices = void 0;
9
+ exports.Dodecahedron = Dodecahedron;
10
+ exports.DodecahedronCage = DodecahedronCage;
9
11
  const primitive_1 = require("./primitive");
10
12
  const cage_1 = require("./cage");
11
13
  const t = (1 + Math.sqrt(5)) / 2;
@@ -58,9 +60,7 @@ function Dodecahedron() {
58
60
  dodecahedron = (0, primitive_1.createPrimitive)(exports.dodecahedronVertices, dodecahedronIndices);
59
61
  return dodecahedron;
60
62
  }
61
- exports.Dodecahedron = Dodecahedron;
62
63
  const dodecahedronCage = (0, cage_1.createCage)(exports.dodecahedronVertices, dodecahedronEdges);
63
64
  function DodecahedronCage() {
64
65
  return dodecahedronCage;
65
66
  }
66
- exports.DodecahedronCage = DodecahedronCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.IcosahedronCage = exports.Icosahedron = void 0;
8
+ exports.Icosahedron = Icosahedron;
9
+ exports.IcosahedronCage = IcosahedronCage;
9
10
  const primitive_1 = require("./primitive");
10
11
  const cage_1 = require("./cage");
11
12
  const t = (1 + Math.sqrt(5)) / 2;
@@ -31,9 +32,7 @@ function Icosahedron() {
31
32
  icosahedron = (0, primitive_1.createPrimitive)(icosahedronVertices, icosahedronIndices);
32
33
  return icosahedron;
33
34
  }
34
- exports.Icosahedron = Icosahedron;
35
35
  const icosahedronCage = (0, cage_1.createCage)(icosahedronVertices, icosahedronEdges);
36
36
  function IcosahedronCage() {
37
37
  return icosahedronCage;
38
38
  }
39
- exports.IcosahedronCage = IcosahedronCage;
@@ -5,7 +5,10 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.OctahedronCage = exports.PerforatedOctahedron = exports.Octahedron = exports.perforatedOctahedronIndices = exports.octahedronIndices = exports.octahedronVertices = void 0;
8
+ exports.perforatedOctahedronIndices = exports.octahedronIndices = exports.octahedronVertices = void 0;
9
+ exports.Octahedron = Octahedron;
10
+ exports.PerforatedOctahedron = PerforatedOctahedron;
11
+ exports.OctahedronCage = OctahedronCage;
9
12
  const primitive_1 = require("./primitive");
10
13
  const cage_1 = require("./cage");
11
14
  exports.octahedronVertices = [
@@ -34,16 +37,13 @@ function Octahedron() {
34
37
  octahedron = (0, primitive_1.createPrimitive)(exports.octahedronVertices, exports.octahedronIndices);
35
38
  return octahedron;
36
39
  }
37
- exports.Octahedron = Octahedron;
38
40
  let perforatedOctahedron;
39
41
  function PerforatedOctahedron() {
40
42
  if (!perforatedOctahedron)
41
43
  perforatedOctahedron = (0, primitive_1.createPrimitive)(exports.octahedronVertices, exports.perforatedOctahedronIndices);
42
44
  return perforatedOctahedron;
43
45
  }
44
- exports.PerforatedOctahedron = PerforatedOctahedron;
45
46
  const octahedronCage = (0, cage_1.createCage)(exports.octahedronVertices, octahedronEdges);
46
47
  function OctahedronCage() {
47
48
  return octahedronCage;
48
49
  }
49
- exports.OctahedronCage = OctahedronCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.PlaneCage = exports.Plane = void 0;
8
+ exports.Plane = Plane;
9
+ exports.PlaneCage = PlaneCage;
9
10
  const plane = {
10
11
  vertices: new Float32Array([
11
12
  -0.5, 0.5, 0,
@@ -31,8 +32,6 @@ const planeCage = {
31
32
  function Plane() {
32
33
  return plane;
33
34
  }
34
- exports.Plane = Plane;
35
35
  function PlaneCage() {
36
36
  return planeCage;
37
37
  }
38
- exports.PlaneCage = PlaneCage;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.polygon = void 0;
8
+ exports.polygon = polygon;
9
9
  /**
10
10
  * Create 3d points for a polygon:
11
11
  * 3 for a triangle, 4 for a rectangle, 5 for a pentagon, 6 for a hexagon...
@@ -24,4 +24,3 @@ function polygon(sideCount, shift, radius = -1) {
24
24
  }
25
25
  return points;
26
26
  }
27
- exports.polygon = polygon;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Polyhedron = exports.DefaultPolyhedronProps = void 0;
8
+ exports.DefaultPolyhedronProps = void 0;
9
+ exports.Polyhedron = Polyhedron;
9
10
  // adapted from three.js, MIT License Copyright 2010-2018 three.js authors
10
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
11
12
  const util_1 = require("../util");
@@ -80,7 +81,6 @@ function Polyhedron(_vertices, _indices, props) {
80
81
  }
81
82
  }
82
83
  }
83
- exports.Polyhedron = Polyhedron;
84
84
  function createBuilder() {
85
85
  const vertices = [];
86
86
  const indices = [];
@@ -5,7 +5,10 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.transformPrimitive = exports.PrimitiveBuilder = exports.copyPrimitive = exports.createPrimitive = void 0;
8
+ exports.createPrimitive = createPrimitive;
9
+ exports.copyPrimitive = copyPrimitive;
10
+ exports.PrimitiveBuilder = PrimitiveBuilder;
11
+ exports.transformPrimitive = transformPrimitive;
9
12
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
13
  const a = (0, linear_algebra_1.Vec3)(), b = (0, linear_algebra_1.Vec3)(), c = (0, linear_algebra_1.Vec3)();
11
14
  /** Create primitive with face normals from vertices and indices */
@@ -20,7 +23,6 @@ function createPrimitive(vertices, indices) {
20
23
  }
21
24
  return builder.getPrimitive();
22
25
  }
23
- exports.createPrimitive = createPrimitive;
24
26
  function copyPrimitive(primitive) {
25
27
  return {
26
28
  vertices: new Float32Array(primitive.vertices),
@@ -28,7 +30,6 @@ function copyPrimitive(primitive) {
28
30
  indices: new Uint32Array(primitive.indices)
29
31
  };
30
32
  }
31
- exports.copyPrimitive = copyPrimitive;
32
33
  const vn = (0, linear_algebra_1.Vec3)();
33
34
  /** Builder to create primitive with face normals */
34
35
  function PrimitiveBuilder(triangleCount, vertexCount) {
@@ -76,7 +77,6 @@ function PrimitiveBuilder(triangleCount, vertexCount) {
76
77
  getPrimitive: () => ({ vertices, normals, indices })
77
78
  };
78
79
  }
79
- exports.PrimitiveBuilder = PrimitiveBuilder;
80
80
  const tmpV = (0, linear_algebra_1.Vec3)();
81
81
  const tmpMat3 = (0, linear_algebra_1.Mat3)();
82
82
  /** Transform primitive in-place */
@@ -93,4 +93,3 @@ function transformPrimitive(primitive, t) {
93
93
  }
94
94
  return primitive;
95
95
  }
96
- exports.transformPrimitive = transformPrimitive;
@@ -5,7 +5,17 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.HexagonalPrismCage = exports.PentagonalPrismCage = exports.DiamondPrismCage = exports.PrismCage = exports.HeptagonalPrism = exports.ShiftedHexagonalPrism = exports.HexagonalPrism = exports.PentagonalPrism = exports.DiamondPrism = exports.Prism = exports.DefaultPrismProps = void 0;
8
+ exports.DefaultPrismProps = void 0;
9
+ exports.Prism = Prism;
10
+ exports.DiamondPrism = DiamondPrism;
11
+ exports.PentagonalPrism = PentagonalPrism;
12
+ exports.HexagonalPrism = HexagonalPrism;
13
+ exports.ShiftedHexagonalPrism = ShiftedHexagonalPrism;
14
+ exports.HeptagonalPrism = HeptagonalPrism;
15
+ exports.PrismCage = PrismCage;
16
+ exports.DiamondPrismCage = DiamondPrismCage;
17
+ exports.PentagonalPrismCage = PentagonalPrismCage;
18
+ exports.HexagonalPrismCage = HexagonalPrismCage;
9
19
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
20
  const primitive_1 = require("./primitive");
11
21
  const polygon_1 = require("./polygon");
@@ -100,42 +110,36 @@ function Prism(points, props) {
100
110
  }
101
111
  return builder.getPrimitive();
102
112
  }
103
- exports.Prism = Prism;
104
113
  let diamond;
105
114
  function DiamondPrism() {
106
115
  if (!diamond)
107
116
  diamond = Prism((0, polygon_1.polygon)(4, false));
108
117
  return diamond;
109
118
  }
110
- exports.DiamondPrism = DiamondPrism;
111
119
  let pentagonalPrism;
112
120
  function PentagonalPrism() {
113
121
  if (!pentagonalPrism)
114
122
  pentagonalPrism = Prism((0, polygon_1.polygon)(5, false));
115
123
  return pentagonalPrism;
116
124
  }
117
- exports.PentagonalPrism = PentagonalPrism;
118
125
  let hexagonalPrism;
119
126
  function HexagonalPrism() {
120
127
  if (!hexagonalPrism)
121
128
  hexagonalPrism = Prism((0, polygon_1.polygon)(6, false));
122
129
  return hexagonalPrism;
123
130
  }
124
- exports.HexagonalPrism = HexagonalPrism;
125
131
  let shiftedHexagonalPrism;
126
132
  function ShiftedHexagonalPrism() {
127
133
  if (!shiftedHexagonalPrism)
128
134
  shiftedHexagonalPrism = Prism((0, polygon_1.polygon)(6, true));
129
135
  return shiftedHexagonalPrism;
130
136
  }
131
- exports.ShiftedHexagonalPrism = ShiftedHexagonalPrism;
132
137
  let heptagonalPrism;
133
138
  function HeptagonalPrism() {
134
139
  if (!heptagonalPrism)
135
140
  heptagonalPrism = Prism((0, polygon_1.polygon)(7, false));
136
141
  return heptagonalPrism;
137
142
  }
138
- exports.HeptagonalPrism = HeptagonalPrism;
139
143
  //
140
144
  /**
141
145
  * Create a prism cage
@@ -159,25 +163,21 @@ function PrismCage(points, height = 1) {
159
163
  }
160
164
  return { vertices, edges };
161
165
  }
162
- exports.PrismCage = PrismCage;
163
166
  let diamondCage;
164
167
  function DiamondPrismCage() {
165
168
  if (!diamondCage)
166
169
  diamondCage = PrismCage((0, polygon_1.polygon)(4, false));
167
170
  return diamondCage;
168
171
  }
169
- exports.DiamondPrismCage = DiamondPrismCage;
170
172
  let pentagonalPrismCage;
171
173
  function PentagonalPrismCage() {
172
174
  if (!pentagonalPrismCage)
173
175
  pentagonalPrismCage = PrismCage((0, polygon_1.polygon)(5, false));
174
176
  return pentagonalPrismCage;
175
177
  }
176
- exports.PentagonalPrismCage = PentagonalPrismCage;
177
178
  let hexagonalPrismCage;
178
179
  function HexagonalPrismCage() {
179
180
  if (!hexagonalPrismCage)
180
181
  hexagonalPrismCage = PrismCage((0, polygon_1.polygon)(6, false));
181
182
  return hexagonalPrismCage;
182
183
  }
183
- exports.HexagonalPrismCage = HexagonalPrismCage;
@@ -5,7 +5,12 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.OctagonalPyramidCage = exports.PyramidCage = exports.PerforatedOctagonalPyramid = exports.OctagonalPyramid = exports.TriangularPyramid = exports.Pyramid = void 0;
8
+ exports.Pyramid = Pyramid;
9
+ exports.TriangularPyramid = TriangularPyramid;
10
+ exports.OctagonalPyramid = OctagonalPyramid;
11
+ exports.PerforatedOctagonalPyramid = PerforatedOctagonalPyramid;
12
+ exports.PyramidCage = PyramidCage;
13
+ exports.OctagonalPyramidCage = OctagonalPyramidCage;
9
14
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
15
  const primitive_1 = require("./primitive");
11
16
  const polygon_1 = require("./polygon");
@@ -51,21 +56,18 @@ function Pyramid(points) {
51
56
  }
52
57
  return builder.getPrimitive();
53
58
  }
54
- exports.Pyramid = Pyramid;
55
59
  let triangularPyramid;
56
60
  function TriangularPyramid() {
57
61
  if (!triangularPyramid)
58
62
  triangularPyramid = Pyramid((0, polygon_1.polygon)(3, true));
59
63
  return triangularPyramid;
60
64
  }
61
- exports.TriangularPyramid = TriangularPyramid;
62
65
  let octagonalPyramid;
63
66
  function OctagonalPyramid() {
64
67
  if (!octagonalPyramid)
65
68
  octagonalPyramid = Pyramid((0, polygon_1.polygon)(8, true));
66
69
  return octagonalPyramid;
67
70
  }
68
- exports.OctagonalPyramid = OctagonalPyramid;
69
71
  let perforatedOctagonalPyramid;
70
72
  function PerforatedOctagonalPyramid() {
71
73
  if (!perforatedOctagonalPyramid) {
@@ -90,7 +92,6 @@ function PerforatedOctagonalPyramid() {
90
92
  }
91
93
  return perforatedOctagonalPyramid;
92
94
  }
93
- exports.PerforatedOctagonalPyramid = PerforatedOctagonalPyramid;
94
95
  //
95
96
  /**
96
97
  * Create a prism cage
@@ -115,11 +116,9 @@ function PyramidCage(points) {
115
116
  }
116
117
  return { vertices, edges };
117
118
  }
118
- exports.PyramidCage = PyramidCage;
119
119
  let octagonalPyramidCage;
120
120
  function OctagonalPyramidCage() {
121
121
  if (!octagonalPyramidCage)
122
122
  octagonalPyramidCage = PyramidCage((0, polygon_1.polygon)(8, true));
123
123
  return octagonalPyramidCage;
124
124
  }
125
- exports.OctagonalPyramidCage = OctagonalPyramidCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Sphere = exports.sphereVertexCount = void 0;
8
+ exports.sphereVertexCount = sphereVertexCount;
9
+ exports.Sphere = Sphere;
9
10
  const polyhedron_1 = require("./polyhedron");
10
11
  const icosahedron_1 = require("./icosahedron");
11
12
  const { vertices, indices } = (0, icosahedron_1.Icosahedron)();
@@ -13,9 +14,7 @@ const { vertices, indices } = (0, icosahedron_1.Icosahedron)();
13
14
  function sphereVertexCount(detail) {
14
15
  return 10 * Math.pow(Math.pow(2, detail), 2) + 2;
15
16
  }
16
- exports.sphereVertexCount = sphereVertexCount;
17
17
  /** Create sphere by subdividing an icosahedron */
18
18
  function Sphere(detail) {
19
19
  return (0, polyhedron_1.Polyhedron)(vertices, indices, { detail, radius: 1 });
20
20
  }
21
- exports.Sphere = Sphere;
@@ -5,7 +5,7 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.SpikedBall = void 0;
8
+ exports.SpikedBall = SpikedBall;
9
9
  const primitive_1 = require("./primitive");
10
10
  const dodecahedron_1 = require("./dodecahedron");
11
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
@@ -52,4 +52,3 @@ function SpikedBall(radiusRatio = 1) {
52
52
  }
53
53
  return (0, primitive_1.createPrimitive)(vertices, indices);
54
54
  }
55
- exports.SpikedBall = SpikedBall;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Star = exports.DefaultStarProps = void 0;
8
+ exports.DefaultStarProps = void 0;
9
+ exports.Star = Star;
9
10
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
10
11
  const primitive_1 = require("./primitive");
11
12
  exports.DefaultStarProps = {
@@ -44,4 +45,3 @@ function Star(props) {
44
45
  }
45
46
  return builder.getPrimitive();
46
47
  }
47
- exports.Star = Star;
@@ -5,7 +5,9 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.TetrahedronCage = exports.Tetrahedron = exports.tetrahedronIndices = exports.tetrahedronVertices = void 0;
8
+ exports.tetrahedronIndices = exports.tetrahedronVertices = void 0;
9
+ exports.Tetrahedron = Tetrahedron;
10
+ exports.TetrahedronCage = TetrahedronCage;
9
11
  const primitive_1 = require("./primitive");
10
12
  const cage_1 = require("./cage");
11
13
  exports.tetrahedronVertices = [
@@ -24,9 +26,7 @@ function Tetrahedron() {
24
26
  tetrahedron = (0, primitive_1.createPrimitive)(exports.tetrahedronVertices, exports.tetrahedronIndices);
25
27
  return tetrahedron;
26
28
  }
27
- exports.Tetrahedron = Tetrahedron;
28
29
  const tetrahedronCage = (0, cage_1.createCage)(exports.tetrahedronVertices, tetrahedronEdges);
29
30
  function TetrahedronCage() {
30
31
  return tetrahedronCage;
31
32
  }
32
- exports.TetrahedronCage = TetrahedronCage;
@@ -5,7 +5,8 @@
5
5
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
6
6
  */
7
7
  Object.defineProperty(exports, "__esModule", { value: true });
8
- exports.Torus = exports.DefaultTorusProps = void 0;
8
+ exports.DefaultTorusProps = void 0;
9
+ exports.Torus = Torus;
9
10
  // adapted from three.js, MIT License Copyright 2010-2021 three.js authors
10
11
  const linear_algebra_1 = require("../../mol-math/linear-algebra");
11
12
  exports.DefaultTorusProps = {
@@ -59,4 +60,3 @@ function Torus(props) {
59
60
  indices: new Uint32Array(indices)
60
61
  };
61
62
  }
62
- exports.Torus = Torus;