molstar 4.2.0 → 4.4.0

package/lib/commonjs/servers/volume/common/data-format.js

@@ -7,7 +7,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.readHeader = exports.encodeHeader = void 0;
+exports.encodeHeader = encodeHeader;
+exports.readHeader = readHeader;
 const tslib_1 = require("tslib");
 const Schema = tslib_1.__importStar(require("./binary-schema"));
 var _schema;
@@ -44,7 +45,6 @@ const headerSchema = _schema.schema;
 function encodeHeader(header) {
     return Schema.encode(headerSchema, header);
 }
-exports.encodeHeader = encodeHeader;
 async function readHeader(file) {
     let { buffer } = await file.readBuffer(0, 4 * 4096);
     const headerSize = buffer.readInt32LE(0);
@@ -54,4 +54,3 @@ async function readHeader(file) {
     const header = Schema.decode(headerSchema, buffer, 4);
     return { header, dataOffset: headerSize + 4 };
 }
-exports.readHeader = readHeader;

package/lib/commonjs/servers/volume/common/file.js

@@ -7,7 +7,10 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.writeInt = exports.createFile = exports.exists = exports.openRead = void 0;
+exports.openRead = openRead;
+exports.exists = exists;
+exports.createFile = createFile;
+exports.writeInt = writeInt;
 const tslib_1 = require("tslib");
 const fs = tslib_1.__importStar(require("fs"));
 const path = tslib_1.__importStar(require("path"));
@@ -28,7 +31,6 @@ async function openRead(filename) {
         });
     });
 }
-exports.openRead = openRead;
 function makeDir(path, root) {
     const dirs = path.split(/\/|\\/g), dir = dirs.shift();
     root = (root || '') + dir + '/';
@@ -44,7 +46,6 @@ function makeDir(path, root) {
 function exists(filename) {
     return fs.existsSync(filename);
 }
-exports.exists = exists;
 function createFile(filename) {
     return new Promise((res, rej) => {
         if (fs.existsSync(filename))
@@ -58,10 +59,8 @@ function createFile(filename) {
         });
     });
 }
-exports.createFile = createFile;
 const smallBuffer = simple_buffer_1.SimpleBuffer.fromBuffer(Buffer.alloc(8));
 async function writeInt(file, value, position) {
     smallBuffer.writeInt32LE(value, 0);
     await file.writeBuffer(position, smallBuffer, 4);
 }
-exports.writeInt = writeInt;

package/lib/commonjs/servers/volume/config.d.ts

@@ -36,11 +36,7 @@ export declare const LimitsConfig: {
     maxOutputSizeInVoxelCountByPrecisionLevel: number[];
 };
 export declare function configureServer(): void;
-export declare function configureLocal(): {
-    maxRequestBlockCount: number;
-    maxFractionalBoxVolume: number;
-    maxOutputSizeInVoxelCountByPrecisionLevel: number[];
-} & {
+export declare function configureLocal(): LimitsConfig & {
     jobs: string;
     jobsTemplate: any;
 };

package/lib/commonjs/servers/volume/config.js

@@ -6,7 +6,9 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.configureLocal = exports.configureServer = exports.LimitsConfig = exports.ServerConfig = void 0;
+exports.LimitsConfig = exports.ServerConfig = void 0;
+exports.configureServer = configureServer;
+exports.configureLocal = configureLocal;
 const tslib_1 = require("tslib");
 const argparse = tslib_1.__importStar(require("argparse"));
 const type_helpers_1 = require("../../mol-util/type-helpers");
@@ -167,7 +169,6 @@ function configureServer() {
         process.exit(1);
     }
 }
-exports.configureServer = configureServer;
 function configureLocal() {
     const parser = new argparse.ArgumentParser({
         // version: VOLUME_SERVER_VERSION,
@@ -200,4 +201,3 @@ function configureLocal() {
         process.exit(1);
     }
 }
-exports.configureLocal = configureLocal;

package/lib/commonjs/servers/volume/pack/data-model.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.samplingBlockCount = exports.createHeader = void 0;
+exports.createHeader = createHeader;
+exports.samplingBlockCount = samplingBlockCount;
 const FORMAT_VERSION = '1.0.0';
 function createHeader(ctx) {
     const header = ctx.channels[0].data.header;
@@ -34,8 +35,6 @@ function createHeader(ctx) {
         })
     };
 }
-exports.createHeader = createHeader;
 function samplingBlockCount(sampling, blockSize) {
     return sampling.sampleCount.map(c => Math.ceil(c / blockSize)).reduce((c, v) => c * v, 1);
 }
-exports.samplingBlockCount = samplingBlockCount;

package/lib/commonjs/servers/volume/pack/downsampling.js

@@ -7,7 +7,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.finalize = exports.downsampleLayer = void 0;
+exports.downsampleLayer = downsampleLayer;
+exports.finalize = finalize;
 /**
  * Downsamples each slice of input data and checks if there is enough data to perform
  * higher rate downsampling.
@@ -24,7 +25,6 @@ function downsampleLayer(ctx) {
         }
     }
 }
-exports.downsampleLayer = downsampleLayer;
 /**
  * When the "native" (rate = 1) sampling is finished, there might still
  * be some data left to be processed for the higher rate samplings.
@@ -44,7 +44,6 @@ function finalize(ctx) {
         }
     }
 }
-exports.finalize = finalize;
 /**
  * The functions downsampleH and downsampleHK both essentially do the
  * same thing: downsample along H (1st axis in axis order) and K (2nd axis in axis order) axes respectively.

package/lib/commonjs/servers/volume/pack/format/ccp4.js

@@ -6,7 +6,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Ccp4Provider = exports.readSlices = void 0;
+exports.Ccp4Provider = void 0;
+exports.readSlices = readSlices;
 const parser_1 = require("../../../../mol-io/reader/ccp4/parser");
 const ccp4_1 = require("../../../../mol-model-formats/volume/ccp4");
 async function readHeader(name, file) {
@@ -46,5 +47,4 @@ async function readSlices(data) {
         slices.isFinished = true;
     }
 }
-exports.readSlices = readSlices;
 exports.Ccp4Provider = { readHeader, readSlices };

package/lib/commonjs/servers/volume/pack/format/dsn6.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Dsn6Provider = exports.readSlices = void 0;
+exports.Dsn6Provider = void 0;
+exports.readSlices = readSlices;
 const parser_1 = require("../../../../mol-io/reader/dsn6/parser");
 const typed_array_1 = require("../../../../mol-io/common/typed-array");
 async function readHeader(name, file) {
@@ -52,5 +53,4 @@ async function readSlices(data) {
         slices.isFinished = true;
     }
 }
-exports.readSlices = readSlices;
 exports.Dsn6Provider = { readHeader, readSlices };

package/lib/commonjs/servers/volume/pack/format.js

@@ -6,7 +6,10 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.open = exports.getProviderFromType = exports.compareHeaders = exports.assignSliceBuffer = void 0;
+exports.assignSliceBuffer = assignSliceBuffer;
+exports.compareHeaders = compareHeaders;
+exports.getProviderFromType = getProviderFromType;
+exports.open = open;
 const tslib_1 = require("tslib");
 const File = tslib_1.__importStar(require("../common/file"));
 const ccp4_1 = require("./format/ccp4");
@@ -29,7 +32,6 @@ function assignSliceBuffer(data, blockSizeInMB) {
         isFinished: false
     };
 }
-exports.assignSliceBuffer = assignSliceBuffer;
 function compareProp(a, b) {
     if (a instanceof Array && b instanceof Array) {
         if (a.length !== b.length)
@@ -49,14 +51,12 @@ function compareHeaders(a, b) {
     }
     return true;
 }
-exports.compareHeaders = compareHeaders;
 function getProviderFromType(type) {
     switch (type) {
         case 'ccp4': return ccp4_1.Ccp4Provider;
         case 'dsn6': return dsn6_1.Dsn6Provider;
     }
 }
-exports.getProviderFromType = getProviderFromType;
 async function open(name, filename, type) {
     const provider = getProviderFromType(type);
     const descriptor = await File.openRead(filename);
@@ -65,4 +65,3 @@ async function open(name, filename, type) {
     const data = { header, file, slices: void 0 };
     return { data, provider };
 }
-exports.open = open;

package/lib/commonjs/servers/volume/pack/main.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.pack = void 0;
+exports.pack = pack;
 const tslib_1 = require("tslib");
 const Format = tslib_1.__importStar(require("./format"));
 const File = tslib_1.__importStar(require("../common/file"));
@@ -23,7 +23,6 @@ async function pack(input, blockSizeInMB, isPeriodic, outputFilename, format) {
         process.exit(1);
     }
 }
-exports.pack = pack;
 function getTime() {
     const t = process.hrtime();
     return t[0] * 1000 + t[1] / 1000000;

package/lib/commonjs/servers/volume/pack/sampling.js

@@ -7,7 +7,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.processData = exports.createContext = void 0;
+exports.createContext = createContext;
+exports.processData = processData;
 const tslib_1 = require("tslib");
 const Data = tslib_1.__importStar(require("./data-model"));
 const File = tslib_1.__importStar(require("../common/file"));
@@ -53,7 +54,6 @@ async function createContext(filename, channels, blockSize, isPeriodic) {
     ctx.totalByteSize = ctx.dataByteOffset + byteOffset;
     return ctx;
 }
-exports.createContext = createContext;
 async function processData(ctx) {
     const channel = ctx.channels[0];
     while (!channel.data.slices.isFinished) {
@@ -63,7 +63,6 @@ async function processData(ctx) {
         await processSlices(ctx);
     }
 }
-exports.processData = processData;
 /** Determine the suitable sampling rates for the input data */
 function getSamplingCounts(baseSampleCount, blockSize) {
     const ret = [baseSampleCount];

package/lib/commonjs/servers/volume/pack/writer.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.writeBlockLayer = void 0;
+exports.writeBlockLayer = writeBlockLayer;
 const typed_array_1 = require("../../../mol-io/common/typed-array");
 const simple_buffer_1 = require("../../../mol-io/common/simple-buffer");
 /** Converts a layer to blocks and writes them to the output file. */
@@ -25,7 +25,6 @@ async function writeBlockLayer(ctx, sampling) {
     }
     sampling.blocks.slicesWritten = 0;
 }
-exports.writeBlockLayer = writeBlockLayer;
 /** Fill a cube at position (u,v) with values from each of the channel */
 function fillCubeBuffer(ctx, sampling, u, v) {
     const { blockSize, cubeBuffer } = ctx;

package/lib/commonjs/servers/volume/server/algebra/box.js

@@ -3,7 +3,20 @@
  * Copyright (c) 2016 - now, David Sehnal, licensed under Apache 2.0, See LICENSE file for more info.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.volume = exports.dimensions = exports.intersect = exports.areIntersecting = exports.bounding = exports.fractionalFromBlock = exports.fractionalToDomain = exports.clampGridToSamples = exports.shift = exports.expandGridBox = exports.fractionalBoxReorderAxes = exports.gridToFractional = exports.fractionalToGrid = exports.cartesianToFractional = void 0;
+exports.cartesianToFractional = cartesianToFractional;
+exports.fractionalToGrid = fractionalToGrid;
+exports.gridToFractional = gridToFractional;
+exports.fractionalBoxReorderAxes = fractionalBoxReorderAxes;
+exports.expandGridBox = expandGridBox;
+exports.shift = shift;
+exports.clampGridToSamples = clampGridToSamples;
+exports.fractionalToDomain = fractionalToDomain;
+exports.fractionalFromBlock = fractionalFromBlock;
+exports.bounding = bounding;
+exports.areIntersecting = areIntersecting;
+exports.intersect = intersect;
+exports.dimensions = dimensions;
+exports.volume = volume;
 const tslib_1 = require("tslib");
 const Coords = tslib_1.__importStar(require("./coordinate"));
 // CONVERSIONS
@@ -21,15 +34,12 @@ function cartesianToFractional(box, spacegroup) {
     ].map(c => Coords.cartesianToFractional(Coords.cartesian(c[0], c[1], c[2]), spacegroup));
     return bounding(corners);
 }
-exports.cartesianToFractional = cartesianToFractional;
 function fractionalToGrid(box, domain) {
     return { a: Coords.fractionalToGrid(box.a, domain, 'bottom'), b: Coords.fractionalToGrid(box.b, domain, 'top') };
 }
-exports.fractionalToGrid = fractionalToGrid;
 function gridToFractional(box) {
     return { a: Coords.gridToFractional(box.a), b: Coords.gridToFractional(box.b) };
 }
-exports.gridToFractional = gridToFractional;
 function fractionalBoxReorderAxes(box, axisOrder) {
     const { a, b } = box;
     return {
@@ -37,7 +47,6 @@ function fractionalBoxReorderAxes(box, axisOrder) {
         b: Coords.withCoord(b, b[axisOrder[0]], b[axisOrder[1]], b[axisOrder[2]])
     };
 }
-exports.fractionalBoxReorderAxes = fractionalBoxReorderAxes;
 function expandGridBox(box, by) {
     const { a, b } = box;
     return {
@@ -45,16 +54,13 @@ function expandGridBox(box, by) {
         b: Coords.withCoord(b, b[0] + by, b[1] + by, b[2] + by)
     };
 }
-exports.expandGridBox = expandGridBox;
 // MISC
 function shift(box, offset) {
     return { a: Coords.add(box.a, offset), b: Coords.add(box.b, offset) };
 }
-exports.shift = shift;
 function clampGridToSamples(box) {
     return { a: Coords.clampGridToSamples(box.a), b: Coords.clampGridToSamples(box.b) };
 }
-exports.clampGridToSamples = clampGridToSamples;
 function fractionalToDomain(box, kind, delta) {
     const ds = Coords.fractional(box.b[0] - box.a[0], box.b[1] - box.a[1], box.b[2] - box.a[2]);
     return Coords.domain(kind, {
@@ -64,7 +70,6 @@ function fractionalToDomain(box, kind, delta) {
         sampleCount: Coords.sampleCounts(ds, delta)
     });
 }
-exports.fractionalToDomain = fractionalToDomain;
 function fractionalFromBlock(block) {
     const { domain } = block;
     const a = Coords.gridToFractional(block);
@@ -74,7 +79,6 @@ function fractionalFromBlock(block) {
     }
     return { a, b };
 }
-exports.fractionalFromBlock = fractionalFromBlock;
 function bounding(xs) {
     const a = Coords.clone(xs[0]);
     const b = Coords.clone(xs[0]);
@@ -86,7 +90,6 @@ function bounding(xs) {
     }
     return { a, b };
 }
-exports.bounding = bounding;
 function areIntersecting(box1, box2) {
     for (let i = 0; i < 3; i++) {
         const x = box1.a[i], y = box1.b[i];
@@ -96,7 +99,6 @@ function areIntersecting(box1, box2) {
     }
     return true;
 }
-exports.areIntersecting = areIntersecting;
 function intersect(box1, box2) {
     const a = Coords.clone(box1.a);
     const b = Coords.clone(box1.a);
@@ -110,12 +112,9 @@ function intersect(box1, box2) {
     }
     return { a, b };
 }
-exports.intersect = intersect;
 function dimensions(box) {
     return [box.b[0] - box.a[0], box.b[1] - box.a[1], box.b[2] - box.a[2]];
 }
-exports.dimensions = dimensions;
 function volume(box) {
     return (box.b[0] - box.a[0]) * (box.b[1] - box.a[1]) * (box.b[2] - box.a[2]);
 }
-exports.volume = volume;

package/lib/commonjs/servers/volume/server/algebra/coordinate.js

@@ -3,7 +3,23 @@
  * Copyright (c) 2016 - now, David Sehnal, licensed under Apache 2.0, See LICENSE file for more info.
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.round = exports.sampleCounts = exports.gridMetrics = exports.linearGridIndex = exports.invert = exports.sub = exports.add = exports.clampGridToSamples = exports.gridToFractional = exports.fractionalToGrid = exports.cartesianToFractional = exports.clone = exports.withCoord = exports.grid = exports.fractional = exports.cartesian = exports.domain = void 0;
+exports.domain = domain;
+exports.cartesian = cartesian;
+exports.fractional = fractional;
+exports.grid = grid;
+exports.withCoord = withCoord;
+exports.clone = clone;
+exports.cartesianToFractional = cartesianToFractional;
+exports.fractionalToGrid = fractionalToGrid;
+exports.gridToFractional = gridToFractional;
+exports.clampGridToSamples = clampGridToSamples;
+exports.add = add;
+exports.sub = sub;
+exports.invert = invert;
+exports.linearGridIndex = linearGridIndex;
+exports.gridMetrics = gridMetrics;
+exports.sampleCounts = sampleCounts;
+exports.round = round;
 const linear_algebra_1 = require("../../../../mol-math/linear-algebra");
 // CONSTRUCTORS
 function domain(kind, info) {
@@ -17,19 +33,15 @@ function domain(kind, info) {
         sampleVolume: sc[0] * sc[1] * sc[2]
     };
 }
-exports.domain = domain;
 function cartesian(x, y, z) {
     return { 0: x, 1: y, 2: z, kind: 0 /* Space.Cartesian */ };
 }
-exports.cartesian = cartesian;
 function fractional(x, y, z) {
     return { 0: x, 1: y, 2: z, kind: 1 /* Space.Fractional */ };
 }
-exports.fractional = fractional;
 function grid(domain, x, y, z) {
     return { 0: x, 1: y, 2: z, kind: 2 /* Space.Grid */, domain };
 }
-exports.grid = grid;
 function withCoord(a, x, y, z) {
     switch (a.kind) {
         case 0 /* Space.Cartesian */: return cartesian(x, y, z);
@@ -37,17 +49,14 @@ function withCoord(a, x, y, z) {
         case 2 /* Space.Grid */: return grid(a.domain, x, y, z);
     }
 }
-exports.withCoord = withCoord;
 function clone(a) {
     return withCoord(a, a[0], a[1], a[2]);
 }
-exports.clone = clone;
 // CONVERSIONS
 function cartesianToFractional(a, spacegroup) {
     const coord = Helpers.transform(a, spacegroup.toFractional);
     return fractional(coord[0], coord[1], coord[2]);
 }
-exports.cartesianToFractional = cartesianToFractional;
 function fractionalToGrid(a, domain, snap) {
     const { origin, delta } = domain;
     const coord = grid(domain, 0.1, 0.1, 0.1);
@@ -56,7 +65,6 @@ function fractionalToGrid(a, domain, snap) {
     }
     return coord;
 }
-exports.fractionalToGrid = fractionalToGrid;
 function gridToFractional(a) {
     const { origin, delta } = a.domain;
     const coord = fractional(0.1, 0.1, 0.1);
@@ -65,7 +73,6 @@ function gridToFractional(a) {
     }
     return coord;
 }
-exports.gridToFractional = gridToFractional;
 // MISC
 function clampGridToSamples(a) {
     const { sampleCount } = a.domain;
@@ -80,25 +87,20 @@ function clampGridToSamples(a) {
     }
     return coord;
 }
-exports.clampGridToSamples = clampGridToSamples;
 function add(a, b) {
     return withCoord(a, a[0] + b[0], a[1] + b[1], a[2] + b[2]);
 }
-exports.add = add;
 function sub(a, b) {
     return withCoord(a, a[0] - b[0], a[1] - b[1], a[2] - b[2]);
 }
-exports.sub = sub;
 function invert(a) {
     return withCoord(a, -a[0], -a[1], -a[2]);
 }
-exports.invert = invert;
 /** Maps each grid point to a unique integer */
 function linearGridIndex(a) {
     const samples = a.domain.sampleCount;
     return a[0] + samples[0] * (a[1] + a[2] * samples[1]);
 }
-exports.linearGridIndex = linearGridIndex;
 function gridMetrics(dimensions) {
     return {
         sizeX: dimensions[0],
@@ -106,7 +108,6 @@ function gridMetrics(dimensions) {
         sizeXYZ: dimensions[0] * dimensions[1] * dimensions[2]
     };
 }
-exports.gridMetrics = gridMetrics;
 function sampleCounts(dimensions, delta) {
     return [
         Helpers.snap(dimensions[0] / delta[0], 'top'),
@@ -114,12 +115,10 @@ function sampleCounts(dimensions, delta) {
         Helpers.snap(dimensions[2] / delta[2], 'top')
     ];
 }
-exports.sampleCounts = sampleCounts;
 // to prevent floating point rounding errors
 function round(v) {
     return Math.round(10000000 * v) / 10000000;
 }
-exports.round = round;
 var Helpers;
 (function (Helpers) {
     function transform(x, matrix) {

package/lib/commonjs/servers/volume/server/api.js

@@ -7,7 +7,9 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.queryBox = exports.getExtendedHeaderJson = exports.getOutputFilename = void 0;
+exports.getOutputFilename = getOutputFilename;
+exports.getExtendedHeaderJson = getExtendedHeaderJson;
+exports.queryBox = queryBox;
 const tslib_1 = require("tslib");
 const File = tslib_1.__importStar(require("../common/file"));
 const execute_1 = require("./query/execute");
@@ -26,7 +28,6 @@ function getOutputFilename(source, id, { asBinary, box, detail, forcedSamplingLe
         : `${box.kind === 'Cartesian' ? 'cartn' : 'frac'}_${r(box.a[0])}_${r(box.a[1])}_${r(box.a[2])}_${r(box.b[0])}_${r(box.b[1])}_${r(box.b[2])}`;
     return `${n(source)}_${n(id)}-${boxInfo}_${det}.${asBinary ? 'bcif' : 'cif'}`;
 }
-exports.getOutputFilename = getOutputFilename;
 /** Reads the header and includes information about available detail levels */
 async function getExtendedHeaderJson(filename, sourceId) {
     console_logger_1.ConsoleLogger.log('Header', sourceId);
@@ -55,11 +56,9 @@ async function getExtendedHeaderJson(filename, sourceId) {
         return void 0;
     }
 }
-exports.getExtendedHeaderJson = getExtendedHeaderJson;
 async function queryBox(params, outputProvider) {
     return await (0, execute_1.execute)(params, outputProvider);
 }
-exports.queryBox = queryBox;
 async function readHeader(filename, sourceId) {
     let file;
     try {

package/lib/commonjs/servers/volume/server/local-api.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.run = void 0;
+exports.run = run;
 const tslib_1 = require("tslib");
 const Api = tslib_1.__importStar(require("./api"));
 const Coordinate = tslib_1.__importStar(require("./algebra/coordinate"));
@@ -28,7 +28,6 @@ async function run(jobs) {
         console.log(`[Progress] ${progress}/${jobs.length} in ${elapsed.toFixed(2)}s`);
     }
 }
-exports.run = run;
 function getTime() {
     const t = process.hrtime();
     return t[0] * 1000 + t[1] / 1000000;

package/lib/commonjs/servers/volume/server/query/compose.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.compose = void 0;
+exports.compose = compose;
 const tslib_1 = require("tslib");
 const Box = tslib_1.__importStar(require("../algebra/box"));
 const Coords = tslib_1.__importStar(require("../algebra/coordinate"));
@@ -17,7 +17,6 @@ async function compose(query) {
         await fillBlock(query, block);
     }
 }
-exports.compose = compose;
 async function readBlock(query, coord, blockBox) {
     const { valueType, blockSize } = query.data.header;
     const elementByteSize = (0, typed_array_1.getElementByteSize)(valueType);

package/lib/commonjs/servers/volume/server/query/encode.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.encode = void 0;
+exports.encode = encode;
 const cif_1 = require("../../../../mol-io/writer/cif");
 const version_1 = require("../version");
 const binary_cif_1 = require("../../../../mol-io/common/binary-cif");
@@ -18,7 +18,6 @@ function encode(query, output) {
     w.encode();
     w.writeTo(output);
 }
-exports.encode = encode;
 function string(name, str, isSpecified) {
     if (isSpecified) {
         return cif_1.CifWriter.Field.str(name, (i, d) => str(d), { valueKind: (i, d) => isSpecified(d) ? 0 /* Column.ValueKinds.Present */ : 1 /* Column.ValueKinds.NotPresent */ });

package/lib/commonjs/servers/volume/server/query/execute.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.execute = void 0;
+exports.execute = execute;
 const tslib_1 = require("tslib");
 const DataFormat = tslib_1.__importStar(require("../../common/data-format"));
 const File = tslib_1.__importStar(require("../../common/file"));
@@ -47,7 +47,6 @@ async function execute(params, outputProvider) {
         state_1.State.pendingQueries--;
     }
 }
-exports.execute = execute;
 function getTime() {
     const t = process.hrtime();
     return t[0] * 1000 + t[1] / 1000000;

package/lib/commonjs/servers/volume/server/query/identify.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.findUniqueBlocks = void 0;
+exports.findUniqueBlocks = findUniqueBlocks;
 const tslib_1 = require("tslib");
 const Coords = tslib_1.__importStar(require("../algebra/coordinate"));
 const Box = tslib_1.__importStar(require("../algebra/box"));
@@ -38,7 +38,6 @@ function findUniqueBlocks(data, sampling, queryBox) {
     });
     return blockList;
 }
-exports.findUniqueBlocks = findUniqueBlocks;
 /**
  * Find the integer interval [x, y] so that for all k \in [x, y]
  * [a + k, b + k] intersects with (u, v)

package/lib/commonjs/servers/volume/server/web-api.js

@@ -8,7 +8,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.init = void 0;
+exports.init = init;
 const tslib_1 = require("tslib");
 const Api = tslib_1.__importStar(require("./api"));
 const Coords = tslib_1.__importStar(require("./algebra/coordinate"));
@@ -45,7 +45,6 @@ function init(app) {
         shortcutIconLink: web_schema_1.shortcutIconLink
     }));
 }
-exports.init = init;
 function getMapFileFn() {
     const map = new Function('type', 'id', 'interpolate', [
         'id = id.toLowerCase()',

package/lib/commonjs/servers/volume/server/web-schema.js

@@ -6,7 +6,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.shortcutIconLink = exports.getSchema = void 0;
+exports.shortcutIconLink = void 0;
+exports.getSchema = getSchema;
 const version_1 = require("./version");
 const config_1 = require("../config");
 function getSchema() {
@@ -257,5 +258,4 @@ function getSchema() {
         }
     };
 }
-exports.getSchema = getSchema;
 exports.shortcutIconLink = `<link rel='shortcut icon' href='data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAACAAAAAgCAMAAABEpIrGAAAABGdBTUEAALGPC/xhBQAAAAFzUkdCAK7OHOkAAAAnUExURQAAAMIrHrspHr0oH7soILonHrwqH7onILsoHrsoH7soH7woILwpIKgVokoAAAAMdFJOUwAQHzNxWmBHS5XO6jdtAmoAAACZSURBVDjLxZNRCsQgDAVNXmwb9f7nXZEaLRgXloXOhwQdjMYYwpOLw55fBT46KhbOKhmRR2zLcFJQj8UR+HxFgArIF5BKJbEncC6NDEdI5SatBRSDJwGAoiFDONrEJXWYhGMIcRJGCrb1TOtDahfUuQXd10jkFYq0ViIrbUpNcVT6redeC1+b9tH2WLR93Sx2VCzkv/7NjfABxjQHksGB7lAAAAAASUVORK5CYII=' />`;

package/lib/examples/lighting/index.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2023 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */