molstar 3.8.2 → 3.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (516) hide show
  1. package/build/viewer/index.html +4 -1
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/viewer/app.d.ts +1 -1
  4. package/lib/apps/viewer/app.js +1 -1
  5. package/lib/apps/viewer/index.html +4 -1
  6. package/lib/cli/cif2bcif/converter.js +1 -1
  7. package/lib/commonjs/apps/viewer/app.d.ts +1 -1
  8. package/lib/commonjs/apps/viewer/app.js +2 -1
  9. package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
  10. package/lib/commonjs/examples/alpha-orbitals/index.d.ts +1 -1
  11. package/lib/commonjs/examples/alpha-orbitals/index.js +4 -1
  12. package/lib/commonjs/examples/basic-wrapper/custom-theme.js +1 -1
  13. package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +3 -3
  14. package/lib/commonjs/extensions/alpha-orbitals/density.d.ts +1 -1
  15. package/lib/commonjs/extensions/alpha-orbitals/density.js +6 -2
  16. package/lib/commonjs/extensions/alpha-orbitals/orbitals.d.ts +1 -1
  17. package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +6 -3
  18. package/lib/commonjs/extensions/anvil/algorithm.js +1 -1
  19. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  20. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  21. package/lib/commonjs/extensions/cellpack/state.js +1 -1
  22. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +1 -1
  23. package/lib/commonjs/extensions/g3d/model.js +1 -1
  24. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
  25. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
  26. package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +1 -1
  27. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +4 -4
  28. package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +1 -1
  29. package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
  30. package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
  31. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  32. package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
  33. package/lib/commonjs/mol-canvas3d/controls/trackball.js +7 -7
  34. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +14 -14
  35. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +5 -5
  36. package/lib/commonjs/mol-canvas3d/passes/draw.js +34 -5
  37. package/lib/commonjs/mol-canvas3d/passes/fxaa.js +5 -0
  38. package/lib/commonjs/mol-canvas3d/passes/marking.js +5 -0
  39. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +9 -0
  40. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +18 -5
  41. package/lib/commonjs/mol-canvas3d/passes/pick.js +125 -24
  42. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
  43. package/lib/commonjs/mol-canvas3d/passes/smaa.js +4 -0
  44. package/lib/commonjs/mol-canvas3d/passes/wboit.js +4 -0
  45. package/lib/commonjs/mol-data/db/column.js +5 -5
  46. package/lib/commonjs/mol-data/db/table.js +2 -2
  47. package/lib/commonjs/mol-data/util/array.d.ts +1 -1
  48. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
  49. package/lib/commonjs/mol-gl/compute/grid3d.d.ts +2 -2
  50. package/lib/commonjs/mol-gl/compute/grid3d.js +30 -8
  51. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
  52. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
  53. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
  54. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +6 -1
  55. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
  56. package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
  57. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
  58. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -10
  59. package/lib/commonjs/mol-gl/renderer.js +77 -32
  60. package/lib/commonjs/mol-gl/scene.js +2 -0
  61. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  62. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  63. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  64. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  65. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  66. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  67. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  68. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  69. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  70. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  71. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  72. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  73. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  74. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  75. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +1 -1
  76. package/lib/commonjs/mol-gl/shader/lines.frag.js +1 -1
  77. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  78. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  79. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +1 -1
  80. package/lib/commonjs/mol-gl/shader/points.frag.js +1 -1
  81. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  82. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  83. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +1 -1
  84. package/lib/commonjs/mol-gl/shader/text.frag.js +1 -1
  85. package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
  86. package/lib/commonjs/mol-gl/shader-code.js +41 -9
  87. package/lib/commonjs/mol-gl/webgl/compat.d.ts +34 -1
  88. package/lib/commonjs/mol-gl/webgl/compat.js +50 -2
  89. package/lib/commonjs/mol-gl/webgl/context.d.ts +2 -0
  90. package/lib/commonjs/mol-gl/webgl/context.js +3 -0
  91. package/lib/commonjs/mol-gl/webgl/extensions.d.ts +3 -2
  92. package/lib/commonjs/mol-gl/webgl/extensions.js +6 -1
  93. package/lib/commonjs/mol-gl/webgl/timer.d.ts +22 -0
  94. package/lib/commonjs/mol-gl/webgl/timer.js +169 -0
  95. package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +18 -18
  96. package/lib/commonjs/mol-io/common/binary-cif/decoder.js +16 -16
  97. package/lib/commonjs/mol-io/common/binary-cif/encoding.js +9 -9
  98. package/lib/commonjs/mol-io/reader/cif/binary/field.js +3 -3
  99. package/lib/commonjs/mol-io/reader/cif/data-model.js +14 -14
  100. package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
  101. package/lib/commonjs/mol-io/reader/cif/text/parser.js +23 -23
  102. package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +1 -1
  103. package/lib/commonjs/mol-io/reader/common/text/column/token.js +1 -1
  104. package/lib/commonjs/mol-io/reader/common/text/number-parser.js +6 -6
  105. package/lib/commonjs/mol-io/reader/csv/parser.js +8 -8
  106. package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -10
  107. package/lib/commonjs/mol-io/writer/cif/encoder/text.js +7 -7
  108. package/lib/commonjs/mol-io/writer/cif/encoder.js +8 -8
  109. package/lib/commonjs/mol-io/writer/mol2/encoder.js +4 -4
  110. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +13 -2
  111. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +3 -3
  112. package/lib/commonjs/mol-model/sequence/sequence.js +9 -9
  113. package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
  114. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
  115. package/lib/commonjs/mol-model/structure/export/categories/utils.js +1 -1
  116. package/lib/commonjs/mol-model/structure/model/model.js +2 -2
  117. package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +6 -6
  118. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
  119. package/lib/commonjs/mol-model/structure/model/types.js +116 -116
  120. package/lib/commonjs/mol-model/structure/query/context.js +1 -1
  121. package/lib/commonjs/mol-model/structure/query/queries/generators.js +5 -5
  122. package/lib/commonjs/mol-model/structure/query/queries/internal.js +4 -4
  123. package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +4 -4
  124. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
  125. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +9 -9
  126. package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +106 -106
  127. package/lib/commonjs/mol-model/structure/structure/element/loci.js +5 -5
  128. package/lib/commonjs/mol-model/structure/structure/element/stats.js +5 -5
  129. package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
  130. package/lib/commonjs/mol-model/structure/structure/structure.js +11 -11
  131. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
  132. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
  133. package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +2 -2
  134. package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +1 -1
  135. package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +6 -6
  136. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +6 -6
  137. package/lib/commonjs/mol-model/structure/structure/unit.js +16 -16
  138. package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
  139. package/lib/commonjs/mol-model/structure/util.js +4 -4
  140. package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -2
  141. package/lib/commonjs/mol-model-formats/structure/basic/parser.js +4 -4
  142. package/lib/commonjs/mol-model-formats/structure/basic/properties.js +1 -1
  143. package/lib/commonjs/mol-model-formats/structure/basic/sort.js +1 -1
  144. package/lib/commonjs/mol-model-formats/structure/basic/util.js +1 -1
  145. package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
  146. package/lib/commonjs/mol-model-formats/structure/common/entity.js +1 -1
  147. package/lib/commonjs/mol-model-formats/structure/cube.js +1 -1
  148. package/lib/commonjs/mol-model-formats/structure/gro.js +1 -1
  149. package/lib/commonjs/mol-model-formats/structure/mol.js +1 -1
  150. package/lib/commonjs/mol-model-formats/structure/mol2.js +4 -4
  151. package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -1
  152. package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
  153. package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
  154. package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
  155. package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +8 -8
  156. package/lib/commonjs/mol-model-formats/structure/psf.js +1 -1
  157. package/lib/commonjs/mol-model-formats/structure/top.js +1 -1
  158. package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -1
  159. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
  160. package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
  161. package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +2 -2
  162. package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +31 -31
  163. package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +22 -22
  164. package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +32 -32
  165. package/lib/commonjs/mol-model-props/computed/interactions/charged.js +39 -39
  166. package/lib/commonjs/mol-model-props/computed/interactions/common.js +34 -34
  167. package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +1 -1
  168. package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
  169. package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
  170. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
  171. package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +9 -9
  172. package/lib/commonjs/mol-model-props/computed/interactions/metal.js +26 -26
  173. package/lib/commonjs/mol-model-props/computed/interactions/refine.js +20 -20
  174. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
  175. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
  176. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
  177. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
  178. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
  179. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
  180. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
  181. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
  182. package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +30 -30
  183. package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
  184. package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +10 -10
  185. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
  186. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
  187. package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -1
  188. package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
  189. package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -1
  190. package/lib/commonjs/mol-plugin/animation-loop.js +18 -5
  191. package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +12 -12
  192. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +7 -7
  193. package/lib/commonjs/mol-plugin/context.d.ts +2 -2
  194. package/lib/commonjs/mol-plugin/state.d.ts +1 -14
  195. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +12 -11
  196. package/lib/commonjs/mol-plugin-state/formats/volume.js +20 -13
  197. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +5 -5
  198. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  199. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -1
  200. package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
  201. package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +1 -1
  202. package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
  203. package/lib/commonjs/mol-plugin-ui/viewport.d.ts +2 -2
  204. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
  205. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
  206. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -12
  207. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +12 -12
  208. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
  209. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
  210. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
  211. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
  212. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
  213. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
  214. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
  215. package/lib/commonjs/mol-repr/structure/visual/util/common.js +3 -3
  216. package/lib/commonjs/mol-repr/structure/visual/util/link.js +30 -30
  217. package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
  218. package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
  219. package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
  220. package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +6 -6
  221. package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +2 -2
  222. package/lib/commonjs/mol-script/runtime/query/table.js +13 -13
  223. package/lib/commonjs/mol-state/object.d.ts +3 -3
  224. package/lib/commonjs/mol-task/util/user-timing.js +1 -1
  225. package/lib/commonjs/mol-theme/clipping.js +19 -19
  226. package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
  227. package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +1 -1
  228. package/lib/commonjs/mol-theme/color/chain-id.js +4 -4
  229. package/lib/commonjs/mol-theme/color/element-index.js +1 -1
  230. package/lib/commonjs/mol-theme/color/element-symbol.js +1 -1
  231. package/lib/commonjs/mol-theme/color/entity-id.js +4 -4
  232. package/lib/commonjs/mol-theme/color/entity-source.js +5 -4
  233. package/lib/commonjs/mol-theme/color/hydrophobicity.js +1 -1
  234. package/lib/commonjs/mol-theme/color/illustrative.js +1 -1
  235. package/lib/commonjs/mol-theme/color/model-index.js +1 -1
  236. package/lib/commonjs/mol-theme/color/molecule-type.js +8 -8
  237. package/lib/commonjs/mol-theme/color/occupancy.js +1 -1
  238. package/lib/commonjs/mol-theme/color/operator-hkl.js +1 -1
  239. package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
  240. package/lib/commonjs/mol-theme/color/partial-charge.js +1 -1
  241. package/lib/commonjs/mol-theme/color/polymer-id.js +4 -4
  242. package/lib/commonjs/mol-theme/color/polymer-index.js +1 -1
  243. package/lib/commonjs/mol-theme/color/residue-name.js +1 -1
  244. package/lib/commonjs/mol-theme/color/secondary-structure.js +12 -12
  245. package/lib/commonjs/mol-theme/color/sequence-id.js +7 -7
  246. package/lib/commonjs/mol-theme/color/shape-group.js +1 -1
  247. package/lib/commonjs/mol-theme/color/uncertainty.js +1 -1
  248. package/lib/commonjs/mol-theme/color/uniform.js +1 -1
  249. package/lib/commonjs/mol-theme/color/unit-index.js +1 -1
  250. package/lib/commonjs/mol-theme/color/volume-value.js +1 -1
  251. package/lib/commonjs/mol-theme/label.js +3 -3
  252. package/lib/commonjs/mol-util/binding.js +4 -4
  253. package/lib/commonjs/mol-util/debug.d.ts +6 -1
  254. package/lib/commonjs/mol-util/debug.js +11 -1
  255. package/lib/commonjs/mol-util/input/input-observer.js +20 -20
  256. package/lib/commonjs/mol-util/string-builder.js +1 -1
  257. package/lib/commonjs/servers/model/preprocess/converter.js +1 -1
  258. package/lib/commonjs/servers/model/server/query.js +1 -1
  259. package/lib/commonjs/servers/model/utils/fetch-retry.js +3 -2
  260. package/lib/commonjs/servers/volume/server/algebra/coordinate.js +6 -6
  261. package/lib/commonjs/servers/volume/server/query/encode.js +1 -1
  262. package/lib/examples/alpha-orbitals/index.d.ts +1 -1
  263. package/lib/examples/alpha-orbitals/index.html +11 -0
  264. package/lib/examples/alpha-orbitals/index.js +4 -1
  265. package/lib/examples/basic-wrapper/custom-theme.js +1 -1
  266. package/lib/examples/proteopedia-wrapper/coloring.js +3 -3
  267. package/lib/extensions/alpha-orbitals/density.d.ts +1 -1
  268. package/lib/extensions/alpha-orbitals/density.js +6 -2
  269. package/lib/extensions/alpha-orbitals/orbitals.d.ts +1 -1
  270. package/lib/extensions/alpha-orbitals/orbitals.js +6 -3
  271. package/lib/extensions/anvil/algorithm.js +1 -1
  272. package/lib/extensions/cellpack/color/generate.js +1 -1
  273. package/lib/extensions/cellpack/color/provided.js +1 -1
  274. package/lib/extensions/cellpack/state.js +1 -1
  275. package/lib/extensions/dnatco/confal-pyramids/color.js +1 -1
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@@ -19,7 +19,7 @@ import { StateObjectSelector } from '../../mol-state';
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  import { Color } from '../../mol-util/color';
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  import '../../mol-util/polyfill';
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  export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
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- export { setDebugMode, setProductionMode } from '../../mol-util/debug';
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+ export { setDebugMode, setProductionMode, setTimingMode } from '../../mol-util/debug';
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  declare const DefaultViewerOptions: {
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  customFormats: [string, DataFormatProvider<any, any, any>][];
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  extensions: ("cellpack" | "g3d" | "geo-export" | "model-export" | "mp4-export" | "pdbe-structure-quality-report" | "zenodo-import" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "ma-quality-assessment")[];
@@ -35,7 +35,7 @@ import { Asset } from '../../mol-util/assets';
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  import '../../mol-util/polyfill';
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  import { ObjectKeys } from '../../mol-util/type-helpers';
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  export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
38
- export { setDebugMode, setProductionMode } from '../../mol-util/debug';
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+ export { setDebugMode, setProductionMode, setTimingMode } from '../../mol-util/debug';
39
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  var CustomFormats = [
40
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  ['g3d', G3dProvider]
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  ];
@@ -46,7 +46,10 @@
46
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  }
47
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48
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  var debugMode = getParam('debug-mode', '[^&]+').trim() === '1';
49
- if (debugMode) molstar.setDebugMode(debugMode, debugMode);
49
+ if (debugMode) molstar.setDebugMode(debugMode);
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+
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+ var timingMode = getParam('timing-mode', '[^&]+').trim() === '1';
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+ if (timingMode) molstar.setTimingMode(timingMode);
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  var hideControls = getParam('hide-controls', '[^&]+').trim() === '1';
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  var collapseLeftPanel = getParam('collapse-left-panel', '[^&]+').trim() === '1';
@@ -82,7 +82,7 @@ function getCategoryInstanceProvider(cat, fields) {
82
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  function classify(name, field) {
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  var type = getCifFieldType(field);
84
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  if (type['@type'] === 'str') {
85
- return { name: name, type: 0 /* Str */, value: field.str, valueKind: field.valueKind };
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+ return { name: name, type: 0 /* CifWriter.Field.Type.Str */, value: field.str, valueKind: field.valueKind };
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  }
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  else if (type['@type'] === 'float') {
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  var encoder = classifyFloatArray(field.toFloatArray({ array: Float64Array }));
@@ -19,7 +19,7 @@ import { StateObjectSelector } from '../../mol-state';
19
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  import { Color } from '../../mol-util/color';
20
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  import '../../mol-util/polyfill';
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  export { PLUGIN_VERSION as version } from '../../mol-plugin/version';
22
- export { setDebugMode, setProductionMode } from '../../mol-util/debug';
22
+ export { setDebugMode, setProductionMode, setTimingMode } from '../../mol-util/debug';
23
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  declare const DefaultViewerOptions: {
24
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  customFormats: [string, DataFormatProvider<any, any, any>][];
25
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  extensions: ("cellpack" | "g3d" | "geo-export" | "model-export" | "mp4-export" | "pdbe-structure-quality-report" | "zenodo-import" | "dnatco-confal-pyramids" | "rcsb-assembly-symmetry" | "rcsb-validation-report" | "anvil-membrane-orientation" | "ma-quality-assessment")[];
@@ -6,7 +6,7 @@
6
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  * @author Alexander Rose <alexander.rose@weirdbyte.de>
7
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  */
8
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  Object.defineProperty(exports, "__esModule", { value: true });
9
- exports.ViewerAutoPreset = exports.Viewer = exports.setProductionMode = exports.setDebugMode = exports.version = void 0;
9
+ exports.ViewerAutoPreset = exports.Viewer = exports.setTimingMode = exports.setProductionMode = exports.setDebugMode = exports.version = void 0;
10
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  var tslib_1 = require("tslib");
11
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  var behavior_1 = require("../../extensions/anvil/behavior");
12
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  var cellpack_1 = require("../../extensions/cellpack");
@@ -42,6 +42,7 @@ Object.defineProperty(exports, "version", { enumerable: true, get: function () {
42
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  var debug_1 = require("../../mol-util/debug");
43
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  Object.defineProperty(exports, "setDebugMode", { enumerable: true, get: function () { return debug_1.setDebugMode; } });
44
44
  Object.defineProperty(exports, "setProductionMode", { enumerable: true, get: function () { return debug_1.setProductionMode; } });
45
+ Object.defineProperty(exports, "setTimingMode", { enumerable: true, get: function () { return debug_1.setTimingMode; } });
45
46
  var CustomFormats = [
46
47
  ['g3d', format_1.G3dProvider]
47
48
  ];
@@ -85,7 +85,7 @@ function getCategoryInstanceProvider(cat, fields) {
85
85
  function classify(name, field) {
86
86
  var type = (0, cif_1.getCifFieldType)(field);
87
87
  if (type['@type'] === 'str') {
88
- return { name: name, type: 0 /* Str */, value: field.str, valueKind: field.valueKind };
88
+ return { name: name, type: 0 /* CifWriter.Field.Type.Str */, value: field.str, valueKind: field.valueKind };
89
89
  }
90
90
  else if (type['@type'] === 'float') {
91
91
  var encoder = (0, binary_cif_1.classifyFloatArray)(field.toFloatArray({ array: Float64Array }));
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  */
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
@@ -21,6 +21,7 @@ var controls_1 = require("./controls");
21
21
  var example_data_1 = require("./example-data");
22
22
  require("./index.html");
23
23
  require('mol-plugin-ui/skin/light.scss');
24
+ var debug_1 = require("../../mol-util/debug");
24
25
  var AlphaOrbitalsExample = /** @class */ (function () {
25
26
  function AlphaOrbitalsExample() {
26
27
  this.params = new rxjs_1.BehaviorSubject({});
@@ -232,3 +233,5 @@ var AlphaOrbitalsExample = /** @class */ (function () {
232
233
  }());
233
234
  exports.AlphaOrbitalsExample = AlphaOrbitalsExample;
234
235
  window.AlphaOrbitalsExample = new AlphaOrbitalsExample();
236
+ window.AlphaOrbitalsExample.setDebugMode = debug_1.setDebugMode;
237
+ window.AlphaOrbitalsExample.setTimingMode = debug_1.setTimingMode;
@@ -40,7 +40,7 @@ exports.CustomColorTheme = CustomColorTheme;
40
40
  exports.CustomColorThemeProvider = {
41
41
  name: 'basic-wrapper-custom-color-theme',
42
42
  label: 'Custom Color Theme',
43
- category: "Miscellaneous" /* Misc */,
43
+ category: "Miscellaneous" /* ColorTheme.Category.Misc */,
44
44
  factory: CustomColorTheme,
45
45
  getParams: function () { return ({}); },
46
46
  defaultValues: {},
@@ -23,10 +23,10 @@ function createProteopediaCustomTheme(colors) {
23
23
  }
24
24
  function getAsymId(unit) {
25
25
  switch (unit.kind) {
26
- case 0 /* Atomic */:
26
+ case 0 /* Unit.Kind.Atomic */:
27
27
  return structure_1.StructureProperties.chain.label_asym_id;
28
- case 1 /* Spheres */:
29
- case 2 /* Gaussians */:
28
+ case 1 /* Unit.Kind.Spheres */:
29
+ case 2 /* Unit.Kind.Gaussians */:
30
30
  return structure_1.StructureProperties.coarse.asym_id;
31
31
  }
32
32
  }
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * @author David Sehnal <david.sehnal@gmail.com>
5
5
  */
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * @author David Sehnal <david.sehnal@gmail.com>
6
6
  */
@@ -10,6 +10,7 @@ var tslib_1 = require("tslib");
10
10
  var util_1 = require("../../mol-data/util");
11
11
  var grid3d_1 = require("../../mol-gl/compute/grid3d");
12
12
  var mol_task_1 = require("../../mol-task");
13
+ var debug_1 = require("../../mol-util/debug");
13
14
  var data_model_1 = require("./data-model");
14
15
  var compute_1 = require("./gpu/compute");
15
16
  function createSphericalCollocationDensityGrid(params, orbitals, webgl) {
@@ -21,10 +22,13 @@ function createSphericalCollocationDensityGrid(params, orbitals, webgl) {
21
22
  case 0:
22
23
  cubeGrid = (0, data_model_1.initCubeGrid)(params);
23
24
  if (!(0, grid3d_1.canComputeGrid3dOnGPU)(webgl)) return [3 /*break*/, 2];
25
+ if (debug_1.isTimingMode)
26
+ webgl.timer.mark('createSphericalCollocationDensityGrid');
24
27
  return [4 /*yield*/, (0, compute_1.gpuComputeAlphaOrbitalsDensityGridValues)(ctx, webgl, cubeGrid, orbitals)];
25
28
  case 1:
26
- // console.time('gpu');
27
29
  matrix = _a.sent();
30
+ if (debug_1.isTimingMode)
31
+ webgl.timer.markEnd('createSphericalCollocationDensityGrid');
28
32
  return [3 /*break*/, 3];
29
33
  case 2: throw new Error('Missing OES_texture_float WebGL extension.');
30
34
  case 3:
@@ -1,5 +1,5 @@
1
1
  /**
2
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
2
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
3
  *
4
4
  * Inspired by https://github.com/dgasmith/gau2grid.
5
5
  *
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  /**
3
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
4
  *
5
5
  * Inspired by https://github.com/dgasmith/gau2grid.
6
6
  *
@@ -12,10 +12,10 @@ var tslib_1 = require("tslib");
12
12
  var util_1 = require("../../mol-data/util");
13
13
  var grid3d_1 = require("../../mol-gl/compute/grid3d");
14
14
  var mol_task_1 = require("../../mol-task");
15
+ var debug_1 = require("../../mol-util/debug");
15
16
  var collocation_1 = require("./collocation");
16
17
  var data_model_1 = require("./data-model");
17
18
  var compute_1 = require("./gpu/compute");
18
- // setDebugMode(true);
19
19
  function createSphericalCollocationGrid(params, orbital, webgl) {
20
20
  var _this = this;
21
21
  return mol_task_1.Task.create('Spherical Collocation Grid', function (ctx) { return tslib_1.__awaiter(_this, void 0, void 0, function () {
@@ -25,10 +25,13 @@ function createSphericalCollocationGrid(params, orbital, webgl) {
25
25
  case 0:
26
26
  cubeGrid = (0, data_model_1.initCubeGrid)(params);
27
27
  if (!(0, grid3d_1.canComputeGrid3dOnGPU)(webgl)) return [3 /*break*/, 2];
28
+ if (debug_1.isTimingMode)
29
+ webgl.timer.mark('createSphericalCollocationGrid');
28
30
  return [4 /*yield*/, (0, compute_1.gpuComputeAlphaOrbitalsGridValues)(ctx, webgl, cubeGrid, orbital)];
29
31
  case 1:
30
- // console.time('gpu');
31
32
  matrix = _a.sent();
33
+ if (debug_1.isTimingMode)
34
+ webgl.timer.markEnd('createSphericalCollocationGrid');
32
35
  return [3 /*break*/, 4];
33
36
  case 2: return [4 /*yield*/, (0, collocation_1.sphericalCollocation)(cubeGrid, orbital, ctx)];
34
37
  case 3:
@@ -97,7 +97,7 @@ function initialize(structure, props, accessibleSurfaceArea) {
97
97
  eI = elements[j];
98
98
  l.element = eI;
99
99
  // consider only amino acids in chains
100
- if ((0, util_1.getElementMoleculeType)(unit, eI) !== 5 /* Protein */ || !isPartOfEntity(l)) {
100
+ if ((0, util_1.getElementMoleculeType)(unit, eI) !== 5 /* MoleculeType.Protein */ || !isPartOfEntity(l)) {
101
101
  continue;
102
102
  }
103
103
  // only CA is considered for downstream operations
@@ -74,7 +74,7 @@ exports.CellPackGenerateColorTheme = CellPackGenerateColorTheme;
74
74
  exports.CellPackGenerateColorThemeProvider = {
75
75
  name: 'cellpack-generate',
76
76
  label: 'CellPack Generate',
77
- category: "Chain Property" /* Chain */,
77
+ category: "Chain Property" /* ColorTheme.Category.Chain */,
78
78
  factory: CellPackGenerateColorTheme,
79
79
  getParams: getCellPackGenerateColorThemeParams,
80
80
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.CellPackGenerateColorThemeParams),
@@ -54,7 +54,7 @@ exports.CellPackProvidedColorTheme = CellPackProvidedColorTheme;
54
54
  exports.CellPackProvidedColorThemeProvider = {
55
55
  name: 'cellpack-provided',
56
56
  label: 'CellPack Provided',
57
- category: "Chain Property" /* Chain */,
57
+ category: "Chain Property" /* ColorTheme.Category.Chain */,
58
58
  factory: CellPackProvidedColorTheme,
59
59
  getParams: getCellPackProvidedColorThemeParams,
60
60
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.CellPackProvidedColorThemeParams),
@@ -338,7 +338,7 @@ var StructureFromAssemblies = objects_1.PluginStateTransform.BuiltIn({
338
338
  invariantId = u.invariantId + offsetInvariantId;
339
339
  if (u.invariantId > maxInvariantId)
340
340
  maxInvariantId = u.invariantId;
341
- builder.addUnit(u.kind, u.model, u.conformation.operator, u.elements, 0 /* None */, invariantId);
341
+ builder.addUnit(u.kind, u.model, u.conformation.operator, u.elements, 0 /* Unit.Trait.None */, invariantId);
342
342
  }
343
343
  offsetInvariantId += maxInvariantId + 1;
344
344
  }
@@ -257,7 +257,7 @@ exports.ConfalPyramidsColorTheme = ConfalPyramidsColorTheme;
257
257
  exports.ConfalPyramidsColorThemeProvider = {
258
258
  name: 'confal-pyramids',
259
259
  label: 'Confal Pyramids',
260
- category: "Residue Property" /* Residue */,
260
+ category: "Residue Property" /* ColorTheme.Category.Residue */,
261
261
  factory: ConfalPyramidsColorTheme,
262
262
  getParams: getConfalPyramidsColorThemeParams,
263
263
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.ConfalPyramidsColorThemeParams),
@@ -96,7 +96,7 @@ function getTraj(ctx, data) {
96
96
  for (i = 0; i < rowCount; ++i) {
97
97
  e = normalized.entity_id[i];
98
98
  eName.customName = e;
99
- entityId = entityBuilder.getEntityId(e, 7 /* DNA */, e, eName);
99
+ entityId = entityBuilder.getEntityId(e, 7 /* MoleculeType.DNA */, e, eName);
100
100
  entityIds[i] = entityId;
101
101
  }
102
102
  ihm_sphere_obj_site = db_1.Table.ofPartialColumns(schema_1.BasicSchema.ihm_sphere_obj_site, {
@@ -80,7 +80,7 @@ exports.PLDDTConfidenceColorTheme = PLDDTConfidenceColorTheme;
80
80
  exports.PLDDTConfidenceColorThemeProvider = {
81
81
  name: 'plddt-confidence',
82
82
  label: 'pLDDT Confidence',
83
- category: "Validation" /* Validation */,
83
+ category: "Validation" /* ColorTheme.Category.Validation */,
84
84
  factory: PLDDTConfidenceColorTheme,
85
85
  getParams: getPLDDTConfidenceColorThemeParams,
86
86
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(getPLDDTConfidenceColorThemeParams({})),
@@ -66,7 +66,7 @@ exports.QmeanScoreColorTheme = QmeanScoreColorTheme;
66
66
  exports.QmeanScoreColorThemeProvider = {
67
67
  name: 'qmean-score',
68
68
  label: 'QMEAN Score',
69
- category: "Validation" /* Validation */,
69
+ category: "Validation" /* ColorTheme.Category.Validation */,
70
70
  factory: QmeanScoreColorTheme,
71
71
  getParams: getQmeanScoreColorThemeParams,
72
72
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(getQmeanScoreColorThemeParams({})),
@@ -83,7 +83,7 @@ exports.StructureQualityReportColorTheme = StructureQualityReportColorTheme;
83
83
  exports.StructureQualityReportColorThemeProvider = {
84
84
  name: 'pdbe-structure-quality-report',
85
85
  label: 'Structure Quality Report',
86
- category: "Validation" /* Validation */,
86
+ category: "Validation" /* ColorTheme.Category.Validation */,
87
87
  factory: StructureQualityReportColorTheme,
88
88
  getParams: function (ctx) {
89
89
  var issueTypes = prop_1.StructureQualityReport.getIssueTypes(ctx.structure);
@@ -15,10 +15,10 @@ var palette_1 = require("../../../mol-util/color/palette");
15
15
  var DefaultColor = (0, color_1.Color)(0xCCCCCC);
16
16
  function getAsymId(unit) {
17
17
  switch (unit.kind) {
18
- case 0 /* Atomic */:
18
+ case 0 /* Unit.Kind.Atomic */:
19
19
  return structure_1.StructureProperties.chain.label_asym_id;
20
- case 1 /* Spheres */:
21
- case 2 /* Gaussians */:
20
+ case 1 /* Unit.Kind.Spheres */:
21
+ case 2 /* Unit.Kind.Gaussians */:
22
22
  return structure_1.StructureProperties.coarse.asym_id;
23
23
  }
24
24
  }
@@ -88,7 +88,7 @@ exports.AssemblySymmetryClusterColorTheme = AssemblySymmetryClusterColorTheme;
88
88
  exports.AssemblySymmetryClusterColorThemeProvider = {
89
89
  name: prop_1.AssemblySymmetry.Tag.Cluster,
90
90
  label: 'Assembly Symmetry Cluster',
91
- category: "Symmetry" /* Symmetry */,
91
+ category: "Symmetry" /* ColorTheme.Category.Symmetry */,
92
92
  factory: AssemblySymmetryClusterColorTheme,
93
93
  getParams: getAssemblySymmetryClusterColorThemeParams,
94
94
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.AssemblySymmetryClusterColorThemeParams),
@@ -66,7 +66,7 @@ exports.DensityFitColorTheme = DensityFitColorTheme;
66
66
  exports.DensityFitColorThemeProvider = {
67
67
  name: prop_1.ValidationReport.Tag.DensityFit,
68
68
  label: 'Density Fit',
69
- category: "Validation" /* Validation */,
69
+ category: "Validation" /* ColorTheme.Category.Validation */,
70
70
  factory: DensityFitColorTheme,
71
71
  getParams: function () { return ({}); },
72
72
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues({}),
@@ -55,7 +55,7 @@ function GeometryQualityColorTheme(ctx, props) {
55
55
  if (value === undefined)
56
56
  return DefaultColor;
57
57
  var count = set_1.SetUtils.differenceSize(value, ignore_1);
58
- if (count > 0 && polymerType_1[rI] === 0 /* NA */) {
58
+ if (count > 0 && polymerType_1[rI] === 0 /* PolymerType.NA */) {
59
59
  count = 0;
60
60
  if (!ignore_1.has('clash') && clashes_1.getVertexEdgeCount(element) > 0)
61
61
  count += 1;
@@ -97,7 +97,7 @@ exports.GeometryQualityColorTheme = GeometryQualityColorTheme;
97
97
  exports.GeometryQualityColorThemeProvider = {
98
98
  name: prop_1.ValidationReport.Tag.GeometryQuality,
99
99
  label: 'Geometry Quality',
100
- category: "Validation" /* Validation */,
100
+ category: "Validation" /* ColorTheme.Category.Validation */,
101
101
  factory: GeometryQualityColorTheme,
102
102
  getParams: getGeometricQualityColorThemeParams,
103
103
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues(getGeometricQualityColorThemeParams({})),
@@ -54,7 +54,7 @@ exports.RandomCoilIndexColorTheme = RandomCoilIndexColorTheme;
54
54
  exports.RandomCoilIndexColorThemeProvider = {
55
55
  name: prop_1.ValidationReport.Tag.RandomCoilIndex,
56
56
  label: 'Random Coil Index',
57
- category: "Validation" /* Validation */,
57
+ category: "Validation" /* ColorTheme.Category.Validation */,
58
58
  factory: RandomCoilIndexColorTheme,
59
59
  getParams: function () { return ({}); },
60
60
  defaultValues: param_definition_1.ParamDefinition.getDefaultValues({}),
@@ -42,7 +42,7 @@ function createIntraUnitClashCylinderMesh(ctx, unit, structure, theme, props, me
42
42
  pos(elements[a[edgeIndex]], posA);
43
43
  pos(elements[b[edgeIndex]], posB);
44
44
  },
45
- style: function (edgeIndex) { return 6 /* Disk */; },
45
+ style: function (edgeIndex) { return 6 /* LinkStyle.Disk */; },
46
46
  radius: function (edgeIndex) { return magnitude[edgeIndex] * sizeFactor; },
47
47
  };
48
48
  var _a = (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh), m = _a.mesh, boundingSphere = _a.boundingSphere;
@@ -143,7 +143,7 @@ function createInterUnitClashCylinderMesh(ctx, structure, theme, props, mesh) {
143
143
  uA.conformation.position(uA.elements[b.indexA], posA);
144
144
  uB.conformation.position(uB.elements[b.indexB], posB);
145
145
  },
146
- style: function (edgeIndex) { return 6 /* Disk */; },
146
+ style: function (edgeIndex) { return 6 /* LinkStyle.Disk */; },
147
147
  radius: function (edgeIndex) { return edges[edgeIndex].props.magnitude * sizeFactor; }
148
148
  };
149
149
  var _a = (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh), m = _a.mesh, boundingSphere = _a.boundingSphere;
@@ -302,6 +302,8 @@ var Canvas3D;
302
302
  stereoCamera.update();
303
303
  cam = stereoCamera;
304
304
  }
305
+ if (debug_1.isTimingMode)
306
+ webgl.timer.mark('Canvas3D.render');
305
307
  var ctx = { renderer: renderer, camera: cam, scene: scene, helper: helper };
306
308
  if (multi_sample_1.MultiSamplePass.isEnabled(p.multiSample)) {
307
309
  var forceOn = !cameraChanged && markingUpdated && !controls.isAnimating;
@@ -310,6 +312,8 @@ var Canvas3D;
310
312
  else {
311
313
  passes.draw.render(ctx, p, true);
312
314
  }
315
+ if (debug_1.isTimingMode)
316
+ webgl.timer.markEnd('Canvas3D.render');
313
317
  // if only marking has updated, do not set the flag to dirty
314
318
  pickHelper.dirty = pickHelper.dirty || shouldRender;
315
319
  didRender = true;
@@ -21,14 +21,14 @@ var B = input_observer_1.ButtonsType;
21
21
  var M = input_observer_1.ModifiersKeys;
22
22
  var Trigger = binding_1.Binding.Trigger;
23
23
  exports.DefaultTrackballBindings = {
24
- dragRotate: (0, binding_1.Binding)([Trigger(1 /* Primary */, M.create())], 'Rotate', 'Drag using ${triggers}'),
25
- dragRotateZ: (0, binding_1.Binding)([Trigger(1 /* Primary */, M.create({ shift: true }))], 'Rotate around z-axis', 'Drag using ${triggers}'),
26
- dragPan: (0, binding_1.Binding)([Trigger(2 /* Secondary */, M.create()), Trigger(1 /* Primary */, M.create({ control: true }))], 'Pan', 'Drag using ${triggers}'),
24
+ dragRotate: (0, binding_1.Binding)([Trigger(1 /* B.Flag.Primary */, M.create())], 'Rotate', 'Drag using ${triggers}'),
25
+ dragRotateZ: (0, binding_1.Binding)([Trigger(1 /* B.Flag.Primary */, M.create({ shift: true }))], 'Rotate around z-axis', 'Drag using ${triggers}'),
26
+ dragPan: (0, binding_1.Binding)([Trigger(2 /* B.Flag.Secondary */, M.create()), Trigger(1 /* B.Flag.Primary */, M.create({ control: true }))], 'Pan', 'Drag using ${triggers}'),
27
27
  dragZoom: binding_1.Binding.Empty,
28
- dragFocus: (0, binding_1.Binding)([Trigger(8 /* Forth */, M.create())], 'Focus', 'Drag using ${triggers}'),
29
- dragFocusZoom: (0, binding_1.Binding)([Trigger(4 /* Auxilary */, M.create())], 'Focus and zoom', 'Drag using ${triggers}'),
30
- scrollZoom: (0, binding_1.Binding)([Trigger(4 /* Auxilary */, M.create())], 'Zoom', 'Scroll using ${triggers}'),
31
- scrollFocus: (0, binding_1.Binding)([Trigger(4 /* Auxilary */, M.create({ shift: true }))], 'Clip', 'Scroll using ${triggers}'),
28
+ dragFocus: (0, binding_1.Binding)([Trigger(8 /* B.Flag.Forth */, M.create())], 'Focus', 'Drag using ${triggers}'),
29
+ dragFocusZoom: (0, binding_1.Binding)([Trigger(4 /* B.Flag.Auxilary */, M.create())], 'Focus and zoom', 'Drag using ${triggers}'),
30
+ scrollZoom: (0, binding_1.Binding)([Trigger(4 /* B.Flag.Auxilary */, M.create())], 'Zoom', 'Scroll using ${triggers}'),
31
+ scrollFocus: (0, binding_1.Binding)([Trigger(4 /* B.Flag.Auxilary */, M.create({ shift: true }))], 'Clip', 'Scroll using ${triggers}'),
32
32
  scrollFocusZoom: binding_1.Binding.Empty,
33
33
  };
34
34
  exports.TrackballControlsParams = {
@@ -89,7 +89,7 @@ var CameraHelper = /** @class */ (function () {
89
89
  });
90
90
  CameraHelper.prototype.getLoci = function (pickingId) {
91
91
  var objectId = pickingId.objectId, groupId = pickingId.groupId, instanceId = pickingId.instanceId;
92
- if (!this.renderObject || objectId !== this.renderObject.id || groupId === 0 /* None */)
92
+ if (!this.renderObject || objectId !== this.renderObject.id || groupId === 0 /* CameraHelperAxis.None */)
93
93
  return loci_1.EmptyLoci;
94
94
  return CameraAxesLoci(this, groupId, instanceId);
95
95
  };
@@ -117,12 +117,12 @@ var CameraHelper = /** @class */ (function () {
117
117
  exports.CameraHelper = CameraHelper;
118
118
  function getAxisLabel(axis) {
119
119
  switch (axis) {
120
- case 1 /* X */: return 'X Axis';
121
- case 2 /* Y */: return 'Y Axis';
122
- case 3 /* Z */: return 'Z Axis';
123
- case 4 /* XY */: return 'XY Plane';
124
- case 5 /* XZ */: return 'XZ Plane';
125
- case 6 /* YZ */: return 'YZ Plane';
120
+ case 1 /* CameraHelperAxis.X */: return 'X Axis';
121
+ case 2 /* CameraHelperAxis.Y */: return 'Y Axis';
122
+ case 3 /* CameraHelperAxis.Z */: return 'Z Axis';
123
+ case 4 /* CameraHelperAxis.XY */: return 'XY Plane';
124
+ case 5 /* CameraHelperAxis.XZ */: return 'XZ Plane';
125
+ case 6 /* CameraHelperAxis.YZ */: return 'YZ Plane';
126
126
  default: return 'Axes';
127
127
  }
128
128
  }
@@ -164,33 +164,33 @@ function createAxesMesh(scale, mesh) {
164
164
  var y = linear_algebra_1.Vec3.scale((0, linear_algebra_1.Vec3)(), linear_algebra_1.Vec3.unitY, scale);
165
165
  var z = linear_algebra_1.Vec3.scale((0, linear_algebra_1.Vec3)(), linear_algebra_1.Vec3.unitZ, scale);
166
166
  var cylinderProps = { radiusTop: radius, radiusBottom: radius, radialSegments: 32 };
167
- state.currentGroup = 0 /* None */;
167
+ state.currentGroup = 0 /* CameraHelperAxis.None */;
168
168
  (0, sphere_1.addSphere)(state, linear_algebra_1.Vec3.origin, radius, 2);
169
- state.currentGroup = 1 /* X */;
169
+ state.currentGroup = 1 /* CameraHelperAxis.X */;
170
170
  (0, sphere_1.addSphere)(state, x, radius, 2);
171
171
  (0, cylinder_1.addCylinder)(state, linear_algebra_1.Vec3.origin, x, 1, cylinderProps);
172
- state.currentGroup = 2 /* Y */;
172
+ state.currentGroup = 2 /* CameraHelperAxis.Y */;
173
173
  (0, sphere_1.addSphere)(state, y, radius, 2);
174
174
  (0, cylinder_1.addCylinder)(state, linear_algebra_1.Vec3.origin, y, 1, cylinderProps);
175
- state.currentGroup = 3 /* Z */;
175
+ state.currentGroup = 3 /* CameraHelperAxis.Z */;
176
176
  (0, sphere_1.addSphere)(state, z, radius, 2);
177
177
  (0, cylinder_1.addCylinder)(state, linear_algebra_1.Vec3.origin, z, 1, cylinderProps);
178
178
  linear_algebra_1.Vec3.scale(x, x, 0.5);
179
179
  linear_algebra_1.Vec3.scale(y, y, 0.5);
180
180
  linear_algebra_1.Vec3.scale(z, z, 0.5);
181
- state.currentGroup = 4 /* XY */;
181
+ state.currentGroup = 4 /* CameraHelperAxis.XY */;
182
182
  mesh_builder_1.MeshBuilder.addTriangle(state, linear_algebra_1.Vec3.origin, x, y);
183
183
  mesh_builder_1.MeshBuilder.addTriangle(state, linear_algebra_1.Vec3.origin, y, x);
184
184
  var xy = linear_algebra_1.Vec3.add((0, linear_algebra_1.Vec3)(), x, y);
185
185
  mesh_builder_1.MeshBuilder.addTriangle(state, xy, x, y);
186
186
  mesh_builder_1.MeshBuilder.addTriangle(state, xy, y, x);
187
- state.currentGroup = 5 /* XZ */;
187
+ state.currentGroup = 5 /* CameraHelperAxis.XZ */;
188
188
  mesh_builder_1.MeshBuilder.addTriangle(state, linear_algebra_1.Vec3.origin, x, z);
189
189
  mesh_builder_1.MeshBuilder.addTriangle(state, linear_algebra_1.Vec3.origin, z, x);
190
190
  var xz = linear_algebra_1.Vec3.add((0, linear_algebra_1.Vec3)(), x, z);
191
191
  mesh_builder_1.MeshBuilder.addTriangle(state, xz, x, z);
192
192
  mesh_builder_1.MeshBuilder.addTriangle(state, xz, z, x);
193
- state.currentGroup = 6 /* YZ */;
193
+ state.currentGroup = 6 /* CameraHelperAxis.YZ */;
194
194
  mesh_builder_1.MeshBuilder.addTriangle(state, linear_algebra_1.Vec3.origin, y, z);
195
195
  mesh_builder_1.MeshBuilder.addTriangle(state, linear_algebra_1.Vec3.origin, z, y);
196
196
  var yz = linear_algebra_1.Vec3.add((0, linear_algebra_1.Vec3)(), y, z);
@@ -88,7 +88,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
88
88
  };
89
89
  Canvas3dInteractionHelper.prototype.identify = function (e, t) {
90
90
  var xyChanged = this.startX !== this.endX || this.startY !== this.endY;
91
- if (e === 2 /* Drag */) {
91
+ if (e === 2 /* InputEvent.Drag */) {
92
92
  if (xyChanged && !this.outsideViewport(this.startX, this.startY)) {
93
93
  this.events.drag.next({ current: this.prevLoci, buttons: this.buttons, button: this.button, modifiers: this.modifiers, pageStart: linear_algebra_1.Vec2.create(this.startX, this.startY), pageEnd: linear_algebra_1.Vec2.create(this.endX, this.endY) });
94
94
  this.startX = this.endX;
@@ -103,7 +103,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
103
103
  this.startX = this.endX;
104
104
  this.startY = this.endY;
105
105
  }
106
- if (e === 1 /* Click */) {
106
+ if (e === 1 /* InputEvent.Click */) {
107
107
  var loci_1 = this.getLoci(this.id, this.position);
108
108
  this.events.click.next({ current: loci_1, buttons: this.buttons, button: this.button, modifiers: this.modifiers, page: linear_algebra_1.Vec2.create(this.endX, this.endY), position: this.position });
109
109
  this.prevLoci = loci_1;
@@ -119,7 +119,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
119
119
  if (this.inside && t - this.prevT > 1000 / this.props.maxFps) {
120
120
  this.prevT = t;
121
121
  this.currentIdentifyT = t;
122
- this.identify(this.isInteracting ? 2 /* Drag */ : 0 /* Move */, t);
122
+ this.identify(this.isInteracting ? 2 /* InputEvent.Drag */ : 0 /* InputEvent.Move */, t);
123
123
  }
124
124
  };
125
125
  Canvas3dInteractionHelper.prototype.leave = function () {
@@ -143,7 +143,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
143
143
  this.buttons = buttons;
144
144
  this.button = button;
145
145
  this.modifiers = modifiers;
146
- this.identify(1 /* Click */, 0);
146
+ this.identify(1 /* InputEvent.Click */, 0);
147
147
  };
148
148
  Canvas3dInteractionHelper.prototype.drag = function (x, y, buttons, button, modifiers) {
149
149
  this.endX = x;
@@ -151,7 +151,7 @@ var Canvas3dInteractionHelper = /** @class */ (function () {
151
151
  this.buttons = buttons;
152
152
  this.button = button;
153
153
  this.modifiers = modifiers;
154
- this.identify(2 /* Drag */, 0);
154
+ this.identify(2 /* InputEvent.Drag */, 0);
155
155
  };
156
156
  Canvas3dInteractionHelper.prototype.modify = function (modifiers) {
157
157
  if (input_observer_1.ModifiersKeys.areEqual(modifiers, this.modifiers))