molstar 3.8.2 → 3.9.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/index.html +4 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/viewer/app.d.ts +1 -1
- package/lib/apps/viewer/app.js +1 -1
- package/lib/apps/viewer/index.html +4 -1
- package/lib/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/apps/viewer/app.d.ts +1 -1
- package/lib/commonjs/apps/viewer/app.js +2 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.d.ts +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +4 -1
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +3 -3
- package/lib/commonjs/extensions/alpha-orbitals/density.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/density.js +6 -2
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.d.ts +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +6 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
- package/lib/commonjs/extensions/cellpack/state.js +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +1 -1
- package/lib/commonjs/extensions/g3d/model.js +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +4 -4
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/mol-canvas3d/canvas3d.js +4 -0
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +7 -7
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +14 -14
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +5 -5
- package/lib/commonjs/mol-canvas3d/passes/draw.js +34 -5
- package/lib/commonjs/mol-canvas3d/passes/fxaa.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/marking.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +9 -0
- package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +18 -5
- package/lib/commonjs/mol-canvas3d/passes/pick.js +125 -24
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +5 -0
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +4 -0
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +4 -0
- package/lib/commonjs/mol-data/db/column.js +5 -5
- package/lib/commonjs/mol-data/db/table.js +2 -2
- package/lib/commonjs/mol-data/util/array.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
- package/lib/commonjs/mol-gl/compute/grid3d.d.ts +2 -2
- package/lib/commonjs/mol-gl/compute/grid3d.js +30 -8
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +6 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -10
- package/lib/commonjs/mol-gl/renderer.js +77 -32
- package/lib/commonjs/mol-gl/scene.js +2 -0
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/points.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/text.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +41 -9
- package/lib/commonjs/mol-gl/webgl/compat.d.ts +34 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +50 -2
- package/lib/commonjs/mol-gl/webgl/context.d.ts +2 -0
- package/lib/commonjs/mol-gl/webgl/context.js +3 -0
- package/lib/commonjs/mol-gl/webgl/extensions.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/extensions.js +6 -1
- package/lib/commonjs/mol-gl/webgl/timer.d.ts +22 -0
- package/lib/commonjs/mol-gl/webgl/timer.js +169 -0
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +18 -18
- package/lib/commonjs/mol-io/common/binary-cif/decoder.js +16 -16
- package/lib/commonjs/mol-io/common/binary-cif/encoding.js +9 -9
- package/lib/commonjs/mol-io/reader/cif/binary/field.js +3 -3
- package/lib/commonjs/mol-io/reader/cif/data-model.js +14 -14
- package/lib/commonjs/mol-io/reader/cif/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +23 -23
- package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/column/token.js +1 -1
- package/lib/commonjs/mol-io/reader/common/text/number-parser.js +6 -6
- package/lib/commonjs/mol-io/reader/csv/parser.js +8 -8
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +10 -10
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +7 -7
- package/lib/commonjs/mol-io/writer/cif/encoder.js +8 -8
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +4 -4
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +13 -2
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +3 -3
- package/lib/commonjs/mol-model/sequence/sequence.js +9 -9
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +2 -2
- package/lib/commonjs/mol-model/structure/export/categories/utils.js +1 -1
- package/lib/commonjs/mol-model/structure/model/model.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +6 -6
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.js +116 -116
- package/lib/commonjs/mol-model/structure/query/context.js +1 -1
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +5 -5
- package/lib/commonjs/mol-model/structure/query/queries/internal.js +4 -4
- package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +4 -4
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +9 -9
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +106 -106
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/structure.js +11 -11
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +6 -6
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +6 -6
- package/lib/commonjs/mol-model/structure/structure/unit.js +16 -16
- package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
- package/lib/commonjs/mol-model/structure/util.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +2 -2
- package/lib/commonjs/mol-model-formats/structure/basic/parser.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/basic/properties.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/sort.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/util.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cif-core.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/common/entity.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/cube.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/gro.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/mol2.js +4 -4
- package/lib/commonjs/mol-model-formats/structure/prmtop.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +8 -8
- package/lib/commonjs/mol-model-formats/structure/psf.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/top.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/xyz.js +1 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +2 -2
- package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +31 -31
- package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +22 -22
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +32 -32
- package/lib/commonjs/mol-model-props/computed/interactions/charged.js +39 -39
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +34 -34
- package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
- package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
- package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +9 -9
- package/lib/commonjs/mol-model-props/computed/interactions/metal.js +26 -26
- package/lib/commonjs/mol-model-props/computed/interactions/refine.js +20 -20
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +30 -30
- package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
- package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +10 -10
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
- package/lib/commonjs/mol-model-props/sequence/sifts-mapping.js +1 -1
- package/lib/commonjs/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
- package/lib/commonjs/mol-plugin/animation-loop.d.ts +2 -1
- package/lib/commonjs/mol-plugin/animation-loop.js +18 -5
- package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +12 -12
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +7 -7
- package/lib/commonjs/mol-plugin/context.d.ts +2 -2
- package/lib/commonjs/mol-plugin/state.d.ts +1 -14
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +12 -11
- package/lib/commonjs/mol-plugin-state/formats/volume.js +20 -13
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +5 -5
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +1 -1
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -12
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +12 -12
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +30 -30
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +6 -6
- package/lib/commonjs/mol-script/language/symbol-table/core.d.ts +2 -2
- package/lib/commonjs/mol-script/runtime/query/table.js +13 -13
- package/lib/commonjs/mol-state/object.d.ts +3 -3
- package/lib/commonjs/mol-task/util/user-timing.js +1 -1
- package/lib/commonjs/mol-theme/clipping.js +19 -19
- package/lib/commonjs/mol-theme/color/atom-id.js +1 -1
- package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +1 -1
- package/lib/commonjs/mol-theme/color/chain-id.js +4 -4
- package/lib/commonjs/mol-theme/color/element-index.js +1 -1
- package/lib/commonjs/mol-theme/color/element-symbol.js +1 -1
- package/lib/commonjs/mol-theme/color/entity-id.js +4 -4
- package/lib/commonjs/mol-theme/color/entity-source.js +5 -4
- package/lib/commonjs/mol-theme/color/hydrophobicity.js +1 -1
- package/lib/commonjs/mol-theme/color/illustrative.js +1 -1
- package/lib/commonjs/mol-theme/color/model-index.js +1 -1
- package/lib/commonjs/mol-theme/color/molecule-type.js +8 -8
- package/lib/commonjs/mol-theme/color/occupancy.js +1 -1
- package/lib/commonjs/mol-theme/color/operator-hkl.js +1 -1
- package/lib/commonjs/mol-theme/color/operator-name.js +1 -1
- package/lib/commonjs/mol-theme/color/partial-charge.js +1 -1
- package/lib/commonjs/mol-theme/color/polymer-id.js +4 -4
- package/lib/commonjs/mol-theme/color/polymer-index.js +1 -1
- package/lib/commonjs/mol-theme/color/residue-name.js +1 -1
- package/lib/commonjs/mol-theme/color/secondary-structure.js +12 -12
- package/lib/commonjs/mol-theme/color/sequence-id.js +7 -7
- package/lib/commonjs/mol-theme/color/shape-group.js +1 -1
- package/lib/commonjs/mol-theme/color/uncertainty.js +1 -1
- package/lib/commonjs/mol-theme/color/uniform.js +1 -1
- package/lib/commonjs/mol-theme/color/unit-index.js +1 -1
- package/lib/commonjs/mol-theme/color/volume-value.js +1 -1
- package/lib/commonjs/mol-theme/label.js +3 -3
- package/lib/commonjs/mol-util/binding.js +4 -4
- package/lib/commonjs/mol-util/debug.d.ts +6 -1
- package/lib/commonjs/mol-util/debug.js +11 -1
- package/lib/commonjs/mol-util/input/input-observer.js +20 -20
- package/lib/commonjs/mol-util/string-builder.js +1 -1
- package/lib/commonjs/servers/model/preprocess/converter.js +1 -1
- package/lib/commonjs/servers/model/server/query.js +1 -1
- package/lib/commonjs/servers/model/utils/fetch-retry.js +3 -2
- package/lib/commonjs/servers/volume/server/algebra/coordinate.js +6 -6
- package/lib/commonjs/servers/volume/server/query/encode.js +1 -1
- package/lib/examples/alpha-orbitals/index.d.ts +1 -1
- package/lib/examples/alpha-orbitals/index.html +11 -0
- package/lib/examples/alpha-orbitals/index.js +4 -1
- package/lib/examples/basic-wrapper/custom-theme.js +1 -1
- package/lib/examples/proteopedia-wrapper/coloring.js +3 -3
- package/lib/extensions/alpha-orbitals/density.d.ts +1 -1
- package/lib/extensions/alpha-orbitals/density.js +6 -2
- package/lib/extensions/alpha-orbitals/orbitals.d.ts +1 -1
- package/lib/extensions/alpha-orbitals/orbitals.js +6 -3
- package/lib/extensions/anvil/algorithm.js +1 -1
- package/lib/extensions/cellpack/color/generate.js +1 -1
- package/lib/extensions/cellpack/color/provided.js +1 -1
- package/lib/extensions/cellpack/state.js +1 -1
- package/lib/extensions/dnatco/confal-pyramids/color.js +1 -1
- package/lib/extensions/g3d/model.js +1 -1
- package/lib/extensions/model-archive/quality-assessment/color/plddt.js +1 -1
- package/lib/extensions/model-archive/quality-assessment/color/qmean.js +1 -1
- package/lib/extensions/pdbe/structure-quality-report/color.js +1 -1
- package/lib/extensions/rcsb/assembly-symmetry/color.js +4 -4
- package/lib/extensions/rcsb/validation-report/color/density-fit.js +1 -1
- package/lib/extensions/rcsb/validation-report/color/geometry-quality.js +2 -2
- package/lib/extensions/rcsb/validation-report/color/random-coil-index.js +1 -1
- package/lib/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/mol-canvas3d/canvas3d.js +5 -1
- package/lib/mol-canvas3d/controls/trackball.js +7 -7
- package/lib/mol-canvas3d/helper/camera-helper.js +14 -14
- package/lib/mol-canvas3d/helper/interaction-events.js +5 -5
- package/lib/mol-canvas3d/passes/draw.js +34 -5
- package/lib/mol-canvas3d/passes/fxaa.js +5 -0
- package/lib/mol-canvas3d/passes/marking.js +5 -0
- package/lib/mol-canvas3d/passes/multi-sample.js +9 -0
- package/lib/mol-canvas3d/passes/pick.d.ts +18 -5
- package/lib/mol-canvas3d/passes/pick.js +125 -24
- package/lib/mol-canvas3d/passes/postprocessing.js +5 -0
- package/lib/mol-canvas3d/passes/smaa.js +5 -1
- package/lib/mol-canvas3d/passes/wboit.js +5 -1
- package/lib/mol-data/db/column.js +5 -5
- package/lib/mol-data/db/table.js +2 -2
- package/lib/mol-data/util/array.d.ts +1 -1
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +13 -0
- package/lib/mol-gl/compute/grid3d.d.ts +2 -2
- package/lib/mol-gl/compute/grid3d.js +30 -8
- package/lib/mol-gl/compute/histogram-pyramid/reduction.d.ts +1 -1
- package/lib/mol-gl/compute/histogram-pyramid/reduction.js +6 -1
- package/lib/mol-gl/compute/histogram-pyramid/sum.d.ts +1 -1
- package/lib/mol-gl/compute/histogram-pyramid/sum.js +6 -1
- package/lib/mol-gl/compute/marching-cubes/active-voxels.d.ts +1 -1
- package/lib/mol-gl/compute/marching-cubes/active-voxels.js +6 -1
- package/lib/mol-gl/compute/marching-cubes/isosurface.d.ts +1 -1
- package/lib/mol-gl/compute/marching-cubes/isosurface.js +10 -10
- package/lib/mol-gl/renderer.js +77 -32
- package/lib/mol-gl/scene.js +2 -0
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/mol-gl/shader/image.frag.js +1 -1
- package/lib/mol-gl/shader/lines.frag.d.ts +1 -1
- package/lib/mol-gl/shader/lines.frag.js +1 -1
- package/lib/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/mol-gl/shader/points.frag.d.ts +1 -1
- package/lib/mol-gl/shader/points.frag.js +1 -1
- package/lib/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/mol-gl/shader/text.frag.d.ts +1 -1
- package/lib/mol-gl/shader/text.frag.js +1 -1
- package/lib/mol-gl/shader-code.d.ts +1 -1
- package/lib/mol-gl/shader-code.js +41 -9
- package/lib/mol-gl/webgl/compat.d.ts +34 -1
- package/lib/mol-gl/webgl/compat.js +48 -1
- package/lib/mol-gl/webgl/context.d.ts +2 -0
- package/lib/mol-gl/webgl/context.js +3 -0
- package/lib/mol-gl/webgl/extensions.d.ts +3 -2
- package/lib/mol-gl/webgl/extensions.js +7 -2
- package/lib/mol-gl/webgl/timer.d.ts +22 -0
- package/lib/mol-gl/webgl/timer.js +164 -0
- package/lib/mol-io/common/binary-cif/array-encoder.js +18 -18
- package/lib/mol-io/common/binary-cif/decoder.js +16 -16
- package/lib/mol-io/common/binary-cif/encoding.js +9 -9
- package/lib/mol-io/reader/cif/binary/field.js +3 -3
- package/lib/mol-io/reader/cif/data-model.js +14 -14
- package/lib/mol-io/reader/cif/schema.js +1 -1
- package/lib/mol-io/reader/cif/text/parser.js +23 -23
- package/lib/mol-io/reader/common/text/column/fixed.js +1 -1
- package/lib/mol-io/reader/common/text/column/token.js +1 -1
- package/lib/mol-io/reader/common/text/number-parser.js +6 -6
- package/lib/mol-io/reader/csv/parser.js +8 -8
- package/lib/mol-io/writer/cif/encoder/binary.js +10 -10
- package/lib/mol-io/writer/cif/encoder/text.js +7 -7
- package/lib/mol-io/writer/cif/encoder.js +8 -8
- package/lib/mol-io/writer/mol2/encoder.js +4 -4
- package/lib/mol-math/geometry/gaussian-density/gpu.js +13 -2
- package/lib/mol-model/sequence/alignment/sequence.js +3 -3
- package/lib/mol-model/sequence/sequence.js +9 -9
- package/lib/mol-model/structure/export/categories/atom_site_operator_mapping.js +3 -3
- package/lib/mol-model/structure/export/categories/secondary-structure.js +2 -2
- package/lib/mol-model/structure/export/categories/utils.js +1 -1
- package/lib/mol-model/structure/model/model.js +2 -2
- package/lib/mol-model/structure/model/properties/custom/indexed.js +6 -6
- package/lib/mol-model/structure/model/properties/utils/atomic-ranges.js +1 -1
- package/lib/mol-model/structure/model/types.js +116 -116
- package/lib/mol-model/structure/query/context.js +1 -1
- package/lib/mol-model/structure/query/queries/generators.js +5 -5
- package/lib/mol-model/structure/query/queries/internal.js +4 -4
- package/lib/mol-model/structure/query/queries/modifiers.js +4 -4
- package/lib/mol-model/structure/query/utils/structure-distance.d.ts +5 -54
- package/lib/mol-model/structure/query/utils/structure-distance.js +9 -9
- package/lib/mol-model/structure/structure/carbohydrates/constants.js +106 -106
- package/lib/mol-model/structure/structure/element/loci.js +5 -5
- package/lib/mol-model/structure/structure/element/stats.js +5 -5
- package/lib/mol-model/structure/structure/properties.js +5 -5
- package/lib/mol-model/structure/structure/structure.js +11 -11
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +5 -5
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +4 -4
- package/lib/mol-model/structure/structure/unit/bonds.js +2 -2
- package/lib/mol-model/structure/structure/unit/resonance.js +1 -1
- package/lib/mol-model/structure/structure/unit/rings/compute.js +6 -6
- package/lib/mol-model/structure/structure/unit/rings.js +6 -6
- package/lib/mol-model/structure/structure/unit.js +16 -16
- package/lib/mol-model/structure/structure/util/superposition-sifts-mapping.js +1 -1
- package/lib/mol-model/structure/util.js +4 -4
- package/lib/mol-model-formats/structure/basic/atomic.js +2 -2
- package/lib/mol-model-formats/structure/basic/parser.js +4 -4
- package/lib/mol-model-formats/structure/basic/properties.js +1 -1
- package/lib/mol-model-formats/structure/basic/sort.js +1 -1
- package/lib/mol-model-formats/structure/basic/util.js +1 -1
- package/lib/mol-model-formats/structure/cif-core.js +6 -6
- package/lib/mol-model-formats/structure/common/entity.js +1 -1
- package/lib/mol-model-formats/structure/cube.js +1 -1
- package/lib/mol-model-formats/structure/gro.js +1 -1
- package/lib/mol-model-formats/structure/mol.js +1 -1
- package/lib/mol-model-formats/structure/mol2.js +4 -4
- package/lib/mol-model-formats/structure/prmtop.js +1 -1
- package/lib/mol-model-formats/structure/property/bonds/chem_comp.js +3 -3
- package/lib/mol-model-formats/structure/property/bonds/index-pair.js +1 -1
- package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +6 -6
- package/lib/mol-model-formats/structure/property/secondary-structure.js +8 -8
- package/lib/mol-model-formats/structure/psf.js +1 -1
- package/lib/mol-model-formats/structure/top.js +1 -1
- package/lib/mol-model-formats/structure/xyz.js +1 -1
- package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +2 -2
- package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +3 -3
- package/lib/mol-model-props/computed/accessible-surface-area.js +2 -2
- package/lib/mol-model-props/computed/chemistry/functional-group.js +31 -31
- package/lib/mol-model-props/computed/chemistry/geometry.js +22 -22
- package/lib/mol-model-props/computed/chemistry/valence-model.js +32 -32
- package/lib/mol-model-props/computed/interactions/charged.js +39 -39
- package/lib/mol-model-props/computed/interactions/common.js +34 -34
- package/lib/mol-model-props/computed/interactions/contacts-builder.js +1 -1
- package/lib/mol-model-props/computed/interactions/contacts.js +1 -1
- package/lib/mol-model-props/computed/interactions/halogen-bonds.js +12 -12
- package/lib/mol-model-props/computed/interactions/hydrogen-bonds.js +32 -32
- package/lib/mol-model-props/computed/interactions/hydrophobic.js +9 -9
- package/lib/mol-model-props/computed/interactions/metal.js +26 -26
- package/lib/mol-model-props/computed/interactions/refine.js +20 -20
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +2 -2
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +2 -2
- package/lib/mol-model-props/computed/secondary-structure/dssp/bends.js +1 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/bridges.js +12 -12
- package/lib/mol-model-props/computed/secondary-structure/dssp/helices.js +6 -6
- package/lib/mol-model-props/computed/secondary-structure/dssp/ladders.js +3 -3
- package/lib/mol-model-props/computed/secondary-structure/dssp/sheets.js +11 -11
- package/lib/mol-model-props/computed/secondary-structure/dssp/turns.js +3 -3
- package/lib/mol-model-props/computed/secondary-structure/dssp.js +30 -30
- package/lib/mol-model-props/computed/themes/accessible-surface-area.js +1 -1
- package/lib/mol-model-props/computed/themes/interaction-type.js +10 -10
- package/lib/mol-model-props/integrative/cross-link-restraint/color.js +1 -1
- package/lib/mol-model-props/integrative/cross-link-restraint/format.js +3 -3
- package/lib/mol-model-props/sequence/sifts-mapping.js +1 -1
- package/lib/mol-model-props/sequence/themes/sifts-mapping.js +1 -1
- package/lib/mol-plugin/animation-loop.d.ts +2 -1
- package/lib/mol-plugin/animation-loop.js +18 -5
- package/lib/mol-plugin/behavior/dynamic/camera.js +12 -12
- package/lib/mol-plugin/behavior/dynamic/representation.js +7 -7
- package/lib/mol-plugin/context.d.ts +2 -2
- package/lib/mol-plugin/state.d.ts +1 -14
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/formats/volume.d.ts +12 -11
- package/lib/mol-plugin-state/formats/volume.js +20 -13
- package/lib/mol-plugin-state/helpers/structure-selection-query.js +5 -5
- package/lib/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/mol-plugin-ui/controls/parameters.d.ts +1 -1
- package/lib/mol-plugin-ui/sequence/polymer.js +1 -1
- package/lib/mol-plugin-ui/sequence/sequence.js +1 -1
- package/lib/mol-plugin-ui/structure/focus.js +1 -1
- package/lib/mol-plugin-ui/viewport.d.ts +2 -2
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +10 -10
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +10 -10
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +12 -12
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +12 -12
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +16 -16
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +1 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +4 -4
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.js +1 -1
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +2 -2
- package/lib/mol-repr/structure/visual/util/bond.js +2 -2
- package/lib/mol-repr/structure/visual/util/common.js +3 -3
- package/lib/mol-repr/structure/visual/util/link.js +30 -30
- package/lib/mol-repr/structure/visual/util/polymer/backbone.js +6 -6
- package/lib/mol-repr/structure/visual/util/polymer/gap-iterator.js +3 -3
- package/lib/mol-repr/structure/visual/util/polymer/trace-iterator.js +20 -20
- package/lib/mol-repr/structure/visual/util/polymer.js +6 -6
- package/lib/mol-script/language/symbol-table/core.d.ts +2 -2
- package/lib/mol-script/runtime/query/table.js +13 -13
- package/lib/mol-state/object.d.ts +3 -3
- package/lib/mol-task/util/user-timing.js +1 -1
- package/lib/mol-theme/clipping.js +19 -19
- package/lib/mol-theme/color/atom-id.js +1 -1
- package/lib/mol-theme/color/carbohydrate-symbol.js +1 -1
- package/lib/mol-theme/color/chain-id.js +4 -4
- package/lib/mol-theme/color/element-index.js +1 -1
- package/lib/mol-theme/color/element-symbol.js +1 -1
- package/lib/mol-theme/color/entity-id.js +4 -4
- package/lib/mol-theme/color/entity-source.js +5 -4
- package/lib/mol-theme/color/hydrophobicity.js +1 -1
- package/lib/mol-theme/color/illustrative.js +1 -1
- package/lib/mol-theme/color/model-index.js +1 -1
- package/lib/mol-theme/color/molecule-type.js +8 -8
- package/lib/mol-theme/color/occupancy.js +1 -1
- package/lib/mol-theme/color/operator-hkl.js +1 -1
- package/lib/mol-theme/color/operator-name.js +1 -1
- package/lib/mol-theme/color/partial-charge.js +1 -1
- package/lib/mol-theme/color/polymer-id.js +4 -4
- package/lib/mol-theme/color/polymer-index.js +1 -1
- package/lib/mol-theme/color/residue-name.js +1 -1
- package/lib/mol-theme/color/secondary-structure.js +12 -12
- package/lib/mol-theme/color/sequence-id.js +7 -7
- package/lib/mol-theme/color/shape-group.js +1 -1
- package/lib/mol-theme/color/uncertainty.js +1 -1
- package/lib/mol-theme/color/uniform.js +1 -1
- package/lib/mol-theme/color/unit-index.js +1 -1
- package/lib/mol-theme/color/volume-value.js +1 -1
- package/lib/mol-theme/label.js +3 -3
- package/lib/mol-util/binding.js +4 -4
- package/lib/mol-util/debug.d.ts +6 -1
- package/lib/mol-util/debug.js +9 -1
- package/lib/mol-util/input/input-observer.js +20 -20
- package/lib/mol-util/string-builder.js +1 -1
- package/lib/servers/model/preprocess/converter.js +1 -1
- package/lib/servers/model/server/query.js +1 -1
- package/lib/servers/model/utils/fetch-retry.js +3 -2
- package/lib/servers/volume/server/algebra/coordinate.js +6 -6
- package/lib/servers/volume/server/query/encode.js +1 -1
- package/package.json +8 -8
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renderable.render();
|
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if (isTimingMode)
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+
webgl.timer.markEnd('Grid3dCompute.render');
|
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|
_d.label = 8;
|
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|
case 8:
|
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+
if (isTimingMode)
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webgl.timer.mark('Grid3dCompute.readPixels');
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webgl.readPixels(0, 0, uWidth, uWidth, array);
|
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webgl.timer.markEnd('Grid3dCompute.readPixels');
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return [2 /*return*/, new Float32Array(array.buffer, array.byteOffset, nx * ny * nz)];
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}
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});
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@@ -1,5 +1,5 @@
|
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1
1
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/**
|
|
2
|
-
* Copyright (c) 2019-
|
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2
|
+
* Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
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5
5
|
*/
|
|
@@ -15,6 +15,7 @@ import { isPowerOfTwo } from '../../../mol-math/misc';
|
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15
15
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import { quad_vert } from '../../../mol-gl/shader/quad.vert';
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import { reduction_frag } from '../../../mol-gl/shader/histogram-pyramid/reduction.frag';
|
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import { isWebGL2 } from '../../webgl/compat';
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+
import { isTimingMode } from '../../../mol-util/debug';
|
|
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19
|
var HistopyramidReductionSchema = __assign(__assign({}, QuadSchema), { tInputLevel: TextureSpec('texture', 'rgba', 'float', 'nearest'), tPreviousLevel: TextureSpec('texture', 'rgba', 'float', 'nearest'), uSize: UniformSpec('f'), uTexSize: UniformSpec('f'), uFirst: UniformSpec('b') });
|
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var HistogramPyramidName = 'histogram-pyramid';
|
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|
function getHistopyramidReductionRenderable(ctx, inputLevel, previousLevel) {
|
|
@@ -79,6 +80,8 @@ function tryGetFramebuffer(name, webgl) {
|
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return webgl.namedFramebuffers[_name];
|
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}
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|
export function createHistogramPyramid(ctx, inputTexture, scale, gridTexDim) {
|
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+
if (isTimingMode)
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|
+
ctx.timer.mark('createHistogramPyramid');
|
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var gl = ctx.gl;
|
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var w = inputTexture.getWidth();
|
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87
|
var h = inputTexture.getHeight();
|
|
@@ -142,6 +145,8 @@ export function createHistogramPyramid(ctx, inputTexture, scale, gridTexDim) {
|
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offset += size;
|
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|
}
|
|
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|
gl.finish();
|
|
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+
if (isTimingMode)
|
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+
ctx.timer.markEnd('createHistogramPyramid');
|
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|
// printTexture(ctx, pyramidTex, 2)
|
|
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151
|
//
|
|
147
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|
// return at least a count of one to avoid issues downstram
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2019-
|
|
2
|
+
* Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -14,6 +14,7 @@ import { QuadSchema, QuadValues } from '../util';
|
|
|
14
14
|
import { quad_vert } from '../../../mol-gl/shader/quad.vert';
|
|
15
15
|
import { sum_frag } from '../../../mol-gl/shader/histogram-pyramid/sum.frag';
|
|
16
16
|
import { isWebGL2 } from '../../webgl/compat';
|
|
17
|
+
import { isTimingMode } from '../../../mol-util/debug';
|
|
17
18
|
var HistopyramidSumSchema = __assign(__assign({}, QuadSchema), { tTexture: TextureSpec('texture', 'rgba', 'float', 'nearest') });
|
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19
|
var HistopyramidSumName = 'histopyramid-sum';
|
|
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20
|
function getHistopyramidSumRenderable(ctx, texture) {
|
|
@@ -47,6 +48,8 @@ function setRenderingDefaults(ctx) {
|
|
|
47
48
|
var sumBytes = new Uint8Array(4);
|
|
48
49
|
var sumInts = new Int32Array(4);
|
|
49
50
|
export function getHistopyramidSum(ctx, pyramidTopTexture) {
|
|
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|
+
if (isTimingMode)
|
|
52
|
+
ctx.timer.mark('getHistopyramidSum');
|
|
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53
|
var gl = ctx.gl, resources = ctx.resources;
|
|
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54
|
var renderable = getHistopyramidSumRenderable(ctx, pyramidTopTexture);
|
|
52
55
|
ctx.state.currentRenderItemId = -1;
|
|
@@ -68,6 +71,8 @@ export function getHistopyramidSum(ctx, pyramidTopTexture) {
|
|
|
68
71
|
gl.finish();
|
|
69
72
|
ctx.readPixels(0, 0, 1, 1, isWebGL2(gl) ? sumInts : sumBytes);
|
|
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73
|
ctx.unbindFramebuffer();
|
|
74
|
+
if (isTimingMode)
|
|
75
|
+
ctx.timer.markEnd('getHistopyramidSum');
|
|
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76
|
return isWebGL2(gl)
|
|
72
77
|
? sumInts[0]
|
|
73
78
|
: unpackRGBToInt(sumBytes[0], sumBytes[1], sumBytes[2]);
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2019-
|
|
2
|
+
* Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -13,6 +13,7 @@ import { QuadSchema, QuadValues } from '../util';
|
|
|
13
13
|
import { getTriCount } from './tables';
|
|
14
14
|
import { quad_vert } from '../../../mol-gl/shader/quad.vert';
|
|
15
15
|
import { activeVoxels_frag } from '../../../mol-gl/shader/marching-cubes/active-voxels.frag';
|
|
16
|
+
import { isTimingMode } from '../../../mol-util/debug';
|
|
16
17
|
var ActiveVoxelsSchema = __assign(__assign({}, QuadSchema), { tTriCount: TextureSpec('image-uint8', 'alpha', 'ubyte', 'nearest'), tVolumeData: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'), uIsoValue: UniformSpec('f'), uGridDim: UniformSpec('v3'), uGridTexDim: UniformSpec('v3'), uScale: UniformSpec('v2') });
|
|
17
18
|
var ActiveVoxelsName = 'active-voxels';
|
|
18
19
|
function getActiveVoxelsRenderable(ctx, volumeData, gridDim, gridTexDim, isoValue, scale) {
|
|
@@ -49,6 +50,8 @@ function setRenderingDefaults(ctx) {
|
|
|
49
50
|
state.clearColor(0, 0, 0, 0);
|
|
50
51
|
}
|
|
51
52
|
export function calcActiveVoxels(ctx, volumeData, gridDim, gridTexDim, isoValue, gridScale) {
|
|
53
|
+
if (isTimingMode)
|
|
54
|
+
ctx.timer.mark('calcActiveVoxels');
|
|
52
55
|
var gl = ctx.gl, resources = ctx.resources;
|
|
53
56
|
var width = volumeData.getWidth();
|
|
54
57
|
var height = volumeData.getHeight();
|
|
@@ -75,5 +78,7 @@ export function calcActiveVoxels(ctx, volumeData, gridDim, gridTexDim, isoValue,
|
|
|
75
78
|
// console.log('volumeData', volumeData);
|
|
76
79
|
// console.log('at', readTexture(ctx, activeVoxelsTex));
|
|
77
80
|
gl.finish();
|
|
81
|
+
if (isTimingMode)
|
|
82
|
+
ctx.timer.markEnd('calcActiveVoxels');
|
|
78
83
|
return activeVoxelsTex;
|
|
79
84
|
}
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2019-
|
|
2
|
+
* Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*/
|
|
@@ -16,6 +16,7 @@ import { quad_vert } from '../../../mol-gl/shader/quad.vert';
|
|
|
16
16
|
import { isosurface_frag } from '../../../mol-gl/shader/marching-cubes/isosurface.frag';
|
|
17
17
|
import { calcActiveVoxels } from './active-voxels';
|
|
18
18
|
import { isWebGL2 } from '../../webgl/compat';
|
|
19
|
+
import { isTimingMode } from '../../../mol-util/debug';
|
|
19
20
|
var IsosurfaceSchema = __assign(__assign({}, QuadSchema), { tTriIndices: TextureSpec('image-uint8', 'alpha', 'ubyte', 'nearest'), tActiveVoxelsPyramid: TextureSpec('texture', 'rgba', 'float', 'nearest'), tActiveVoxelsBase: TextureSpec('texture', 'rgba', 'float', 'nearest'), tVolumeData: TextureSpec('texture', 'rgba', 'ubyte', 'nearest'), uIsoValue: UniformSpec('f'), uSize: UniformSpec('f'), uLevels: UniformSpec('f'), uCount: UniformSpec('f'), uInvert: UniformSpec('b'), uGridDim: UniformSpec('v3'), uGridTexDim: UniformSpec('v3'), uGridTransform: UniformSpec('m4'), uScale: UniformSpec('v2'), dPackedGroup: DefineSpec('boolean'), dAxisOrder: DefineSpec('string', ['012', '021', '102', '120', '201', '210']) });
|
|
20
21
|
var IsosurfaceName = 'isosurface';
|
|
21
22
|
function getIsosurfaceRenderable(ctx, activeVoxelsPyramid, activeVoxelsBase, volumeData, gridDim, gridTexDim, transform, isoValue, levels, scale, count, invert, packedGroup, axisOrder) {
|
|
@@ -64,6 +65,8 @@ export function createIsosurfaceBuffers(ctx, activeVoxelsBase, volumeData, histo
|
|
|
64
65
|
var drawBuffers = ctx.extensions.drawBuffers;
|
|
65
66
|
if (!drawBuffers)
|
|
66
67
|
throw new Error('need WebGL draw buffers');
|
|
68
|
+
if (isTimingMode)
|
|
69
|
+
ctx.timer.mark('createIsosurfaceBuffers');
|
|
67
70
|
var gl = ctx.gl, resources = ctx.resources, extensions = ctx.extensions;
|
|
68
71
|
var pyramidTex = histogramPyramid.pyramidTex, height = histogramPyramid.height, levels = histogramPyramid.levels, scale = histogramPyramid.scale, count = histogramPyramid.count;
|
|
69
72
|
var width = pyramidTex.getWidth();
|
|
@@ -121,6 +124,8 @@ export function createIsosurfaceBuffers(ctx, activeVoxelsBase, volumeData, histo
|
|
|
121
124
|
gl.clear(gl.COLOR_BUFFER_BIT);
|
|
122
125
|
renderable.render();
|
|
123
126
|
gl.finish();
|
|
127
|
+
if (isTimingMode)
|
|
128
|
+
ctx.timer.markEnd('createIsosurfaceBuffers');
|
|
124
129
|
return { vertexTexture: vertexTexture, groupTexture: groupTexture, normalTexture: normalTexture, vertexCount: count };
|
|
125
130
|
}
|
|
126
131
|
//
|
|
@@ -134,17 +139,12 @@ export function createIsosurfaceBuffers(ctx, activeVoxelsBase, volumeData, histo
|
|
|
134
139
|
* Implementation based on http://www.miaumiau.cat/2016/10/stream-compaction-in-webgl/
|
|
135
140
|
*/
|
|
136
141
|
export function extractIsosurface(ctx, volumeData, gridDim, gridTexDim, gridTexScale, transform, isoValue, invert, packedGroup, axisOrder, vertexTexture, groupTexture, normalTexture) {
|
|
137
|
-
|
|
142
|
+
if (isTimingMode)
|
|
143
|
+
ctx.timer.mark('extractIsosurface');
|
|
138
144
|
var activeVoxelsTex = calcActiveVoxels(ctx, volumeData, gridDim, gridTexDim, isoValue, gridTexScale);
|
|
139
|
-
// ctx.waitForGpuCommandsCompleteSync();
|
|
140
|
-
// console.timeEnd('calcActiveVoxels');
|
|
141
|
-
// console.time('createHistogramPyramid');
|
|
142
145
|
var compacted = createHistogramPyramid(ctx, activeVoxelsTex, gridTexScale, gridTexDim);
|
|
143
|
-
// ctx.waitForGpuCommandsCompleteSync();
|
|
144
|
-
// console.timeEnd('createHistogramPyramid');
|
|
145
|
-
// console.time('createIsosurfaceBuffers');
|
|
146
146
|
var gv = createIsosurfaceBuffers(ctx, activeVoxelsTex, volumeData, compacted, gridDim, gridTexDim, transform, isoValue, invert, packedGroup, axisOrder, vertexTexture, groupTexture, normalTexture);
|
|
147
|
-
|
|
148
|
-
|
|
147
|
+
if (isTimingMode)
|
|
148
|
+
ctx.timer.markEnd('extractIsosurface');
|
|
149
149
|
return gv;
|
|
150
150
|
}
|
package/lib/mol-gl/renderer.js
CHANGED
|
@@ -11,6 +11,7 @@ import { ParamDefinition as PD } from '../mol-util/param-definition';
|
|
|
11
11
|
import { degToRad } from '../mol-math/misc';
|
|
12
12
|
import { arrayMapUpsert } from '../mol-util/array';
|
|
13
13
|
import { clamp } from '../mol-math/interpolate';
|
|
14
|
+
import { isTimingMode } from '../mol-util/debug';
|
|
14
15
|
export var RendererParams = {
|
|
15
16
|
backgroundColor: PD.Color(Color(0x000000), { description: 'Background color of the 3D canvas' }),
|
|
16
17
|
pickingAlphaThreshold: PD.Numeric(0.5, { min: 0.0, max: 1.0, step: 0.01 }, { description: 'The minimum opacity value needed for an object to be pickable.' }),
|
|
@@ -105,8 +106,8 @@ var Renderer;
|
|
|
105
106
|
uFogColor: ValueCell.create(bgColor),
|
|
106
107
|
uRenderMask: ValueCell.create(0),
|
|
107
108
|
uMarkingDepthTest: ValueCell.create(false),
|
|
108
|
-
uPickType: ValueCell.create(0 /* None */),
|
|
109
|
-
uMarkingType: ValueCell.create(0 /* None */),
|
|
109
|
+
uPickType: ValueCell.create(0 /* PickType.None */),
|
|
110
|
+
uMarkingType: ValueCell.create(0 /* MarkingType.None */),
|
|
110
111
|
uTransparentBackground: ValueCell.create(false),
|
|
111
112
|
uLightDirection: ValueCell.create(light.direction),
|
|
112
113
|
uLightColor: ValueCell.create(light.color),
|
|
@@ -160,7 +161,7 @@ var Renderer;
|
|
|
160
161
|
state.depthMask(false);
|
|
161
162
|
}
|
|
162
163
|
}
|
|
163
|
-
else if (flag === 1 /* BlendedFront */) {
|
|
164
|
+
else if (flag === 1 /* Flag.BlendedFront */) {
|
|
164
165
|
state.enable(gl.CULL_FACE);
|
|
165
166
|
if ((_a = r.values.dFlipSided) === null || _a === void 0 ? void 0 : _a.ref.value) {
|
|
166
167
|
state.frontFace(gl.CW);
|
|
@@ -171,7 +172,7 @@ var Renderer;
|
|
|
171
172
|
state.cullFace(gl.BACK);
|
|
172
173
|
}
|
|
173
174
|
}
|
|
174
|
-
else if (flag === 2 /* BlendedBack */) {
|
|
175
|
+
else if (flag === 2 /* Flag.BlendedBack */) {
|
|
175
176
|
state.enable(gl.CULL_FACE);
|
|
176
177
|
if ((_b = r.values.dFlipSided) === null || _b === void 0 ? void 0 : _b.ref.value) {
|
|
177
178
|
state.frontFace(gl.CW);
|
|
@@ -240,83 +241,107 @@ var Renderer;
|
|
|
240
241
|
state.currentRenderItemId = -1;
|
|
241
242
|
};
|
|
242
243
|
var renderPick = function (group, camera, variant, depthTexture, pickType) {
|
|
244
|
+
if (isTimingMode)
|
|
245
|
+
ctx.timer.mark('Renderer.renderPick');
|
|
243
246
|
state.disable(gl.BLEND);
|
|
244
247
|
state.enable(gl.DEPTH_TEST);
|
|
245
248
|
state.depthMask(true);
|
|
246
|
-
updateInternal(group, camera, depthTexture, 0 /* All */, false);
|
|
249
|
+
updateInternal(group, camera, depthTexture, 0 /* Mask.All */, false);
|
|
247
250
|
ValueCell.updateIfChanged(globalUniforms.uPickType, pickType);
|
|
248
251
|
var renderables = group.renderables;
|
|
249
252
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
250
253
|
if (!renderables[i].state.colorOnly) {
|
|
251
|
-
renderObject(renderables[i], variant, 0 /* None */);
|
|
254
|
+
renderObject(renderables[i], variant, 0 /* Flag.None */);
|
|
252
255
|
}
|
|
253
256
|
}
|
|
257
|
+
if (isTimingMode)
|
|
258
|
+
ctx.timer.markEnd('Renderer.renderPick');
|
|
254
259
|
};
|
|
255
260
|
var renderDepth = function (group, camera, depthTexture) {
|
|
261
|
+
if (isTimingMode)
|
|
262
|
+
ctx.timer.mark('Renderer.renderDepth');
|
|
256
263
|
state.disable(gl.BLEND);
|
|
257
264
|
state.enable(gl.DEPTH_TEST);
|
|
258
265
|
state.depthMask(true);
|
|
259
|
-
updateInternal(group, camera, depthTexture, 0 /* All */, false);
|
|
266
|
+
updateInternal(group, camera, depthTexture, 0 /* Mask.All */, false);
|
|
260
267
|
var renderables = group.renderables;
|
|
261
268
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
262
|
-
renderObject(renderables[i], 'depth', 0 /* None */);
|
|
269
|
+
renderObject(renderables[i], 'depth', 0 /* Flag.None */);
|
|
263
270
|
}
|
|
271
|
+
if (isTimingMode)
|
|
272
|
+
ctx.timer.markEnd('Renderer.renderDepth');
|
|
264
273
|
};
|
|
265
274
|
var renderDepthOpaque = function (group, camera, depthTexture) {
|
|
266
275
|
var _a;
|
|
276
|
+
if (isTimingMode)
|
|
277
|
+
ctx.timer.mark('Renderer.renderDepthOpaque');
|
|
267
278
|
state.disable(gl.BLEND);
|
|
268
279
|
state.enable(gl.DEPTH_TEST);
|
|
269
280
|
state.depthMask(true);
|
|
270
|
-
updateInternal(group, camera, depthTexture, 1 /* Opaque */, false);
|
|
281
|
+
updateInternal(group, camera, depthTexture, 1 /* Mask.Opaque */, false);
|
|
271
282
|
var renderables = group.renderables;
|
|
272
283
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
273
284
|
var r = renderables[i];
|
|
274
285
|
if (r.state.opaque && r.values.transparencyAverage.ref.value !== 1 && !((_a = r.values.dXrayShaded) === null || _a === void 0 ? void 0 : _a.ref.value)) {
|
|
275
|
-
renderObject(r, 'depth', 0 /* None */);
|
|
286
|
+
renderObject(r, 'depth', 0 /* Flag.None */);
|
|
276
287
|
}
|
|
277
288
|
}
|
|
289
|
+
if (isTimingMode)
|
|
290
|
+
ctx.timer.markEnd('Renderer.renderDepthOpaque');
|
|
278
291
|
};
|
|
279
292
|
var renderDepthTransparent = function (group, camera, depthTexture) {
|
|
280
293
|
var _a;
|
|
294
|
+
if (isTimingMode)
|
|
295
|
+
ctx.timer.mark('Renderer.renderDepthTransparent');
|
|
281
296
|
state.disable(gl.BLEND);
|
|
282
297
|
state.enable(gl.DEPTH_TEST);
|
|
283
298
|
state.depthMask(true);
|
|
284
|
-
updateInternal(group, camera, depthTexture, 2 /* Transparent */, false);
|
|
299
|
+
updateInternal(group, camera, depthTexture, 2 /* Mask.Transparent */, false);
|
|
285
300
|
var renderables = group.renderables;
|
|
286
301
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
287
302
|
var r = renderables[i];
|
|
288
303
|
if (!r.state.opaque || r.values.transparencyAverage.ref.value > 0 || ((_a = r.values.dXrayShaded) === null || _a === void 0 ? void 0 : _a.ref.value)) {
|
|
289
|
-
renderObject(r, 'depth', 0 /* None */);
|
|
304
|
+
renderObject(r, 'depth', 0 /* Flag.None */);
|
|
290
305
|
}
|
|
291
306
|
}
|
|
307
|
+
if (isTimingMode)
|
|
308
|
+
ctx.timer.markEnd('Renderer.renderDepthTransparent');
|
|
292
309
|
};
|
|
293
310
|
var renderMarkingDepth = function (group, camera, depthTexture) {
|
|
311
|
+
if (isTimingMode)
|
|
312
|
+
ctx.timer.mark('Renderer.renderMarkingDepth');
|
|
294
313
|
state.disable(gl.BLEND);
|
|
295
314
|
state.enable(gl.DEPTH_TEST);
|
|
296
315
|
state.depthMask(true);
|
|
297
|
-
updateInternal(group, camera, depthTexture, 0 /* All */, false);
|
|
298
|
-
ValueCell.updateIfChanged(globalUniforms.uMarkingType, 1 /* Depth */);
|
|
316
|
+
updateInternal(group, camera, depthTexture, 0 /* Mask.All */, false);
|
|
317
|
+
ValueCell.updateIfChanged(globalUniforms.uMarkingType, 1 /* MarkingType.Depth */);
|
|
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318
|
var renderables = group.renderables;
|
|
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319
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
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320
|
var r = renderables[i];
|
|
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321
|
if (r.values.markerAverage.ref.value !== 1) {
|
|
303
|
-
renderObject(renderables[i], 'marking', 0 /* None */);
|
|
322
|
+
renderObject(renderables[i], 'marking', 0 /* Flag.None */);
|
|
304
323
|
}
|
|
305
324
|
}
|
|
325
|
+
if (isTimingMode)
|
|
326
|
+
ctx.timer.markEnd('Renderer.renderMarkingDepth');
|
|
306
327
|
};
|
|
307
328
|
var renderMarkingMask = function (group, camera, depthTexture) {
|
|
329
|
+
if (isTimingMode)
|
|
330
|
+
ctx.timer.mark('Renderer.renderMarkingMask');
|
|
308
331
|
state.disable(gl.BLEND);
|
|
309
332
|
state.enable(gl.DEPTH_TEST);
|
|
310
333
|
state.depthMask(true);
|
|
311
|
-
updateInternal(group, camera, depthTexture, 0 /* All */, !!depthTexture);
|
|
312
|
-
ValueCell.updateIfChanged(globalUniforms.uMarkingType, 2 /* Mask */);
|
|
334
|
+
updateInternal(group, camera, depthTexture, 0 /* Mask.All */, !!depthTexture);
|
|
335
|
+
ValueCell.updateIfChanged(globalUniforms.uMarkingType, 2 /* MarkingType.Mask */);
|
|
313
336
|
var renderables = group.renderables;
|
|
314
337
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
315
338
|
var r = renderables[i];
|
|
316
339
|
if (r.values.markerAverage.ref.value > 0) {
|
|
317
|
-
renderObject(renderables[i], 'marking', 0 /* None */);
|
|
340
|
+
renderObject(renderables[i], 'marking', 0 /* Flag.None */);
|
|
318
341
|
}
|
|
319
342
|
}
|
|
343
|
+
if (isTimingMode)
|
|
344
|
+
ctx.timer.markEnd('Renderer.renderMarkingMask');
|
|
320
345
|
};
|
|
321
346
|
var renderBlended = function (group, camera, depthTexture) {
|
|
322
347
|
renderBlendedOpaque(group, camera, depthTexture);
|
|
@@ -324,25 +349,31 @@ var Renderer;
|
|
|
324
349
|
};
|
|
325
350
|
var renderBlendedOpaque = function (group, camera, depthTexture) {
|
|
326
351
|
var _a, _b;
|
|
352
|
+
if (isTimingMode)
|
|
353
|
+
ctx.timer.mark('Renderer.renderBlendedOpaque');
|
|
327
354
|
state.disable(gl.BLEND);
|
|
328
355
|
state.enable(gl.DEPTH_TEST);
|
|
329
356
|
state.depthMask(true);
|
|
330
|
-
updateInternal(group, camera, depthTexture, 1 /* Opaque */, false);
|
|
357
|
+
updateInternal(group, camera, depthTexture, 1 /* Mask.Opaque */, false);
|
|
331
358
|
var renderables = group.renderables;
|
|
332
359
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
333
360
|
var r = renderables[i];
|
|
334
361
|
if (r.state.opaque) {
|
|
335
|
-
renderObject(r, 'colorBlended', 0 /* None */);
|
|
362
|
+
renderObject(r, 'colorBlended', 0 /* Flag.None */);
|
|
336
363
|
}
|
|
337
364
|
else if (((_a = r.values.uDoubleSided) === null || _a === void 0 ? void 0 : _a.ref.value) && ((_b = r.values.dTransparentBackfaces) === null || _b === void 0 ? void 0 : _b.ref.value) === 'opaque') {
|
|
338
|
-
renderObject(r, 'colorBlended', 2 /* BlendedBack */);
|
|
365
|
+
renderObject(r, 'colorBlended', 2 /* Flag.BlendedBack */);
|
|
339
366
|
}
|
|
340
367
|
}
|
|
368
|
+
if (isTimingMode)
|
|
369
|
+
ctx.timer.markEnd('Renderer.renderBlendedOpaque');
|
|
341
370
|
};
|
|
342
371
|
var renderBlendedTransparent = function (group, camera, depthTexture) {
|
|
343
372
|
var _a, _b;
|
|
373
|
+
if (isTimingMode)
|
|
374
|
+
ctx.timer.mark('Renderer.renderBlendedTransparent');
|
|
344
375
|
state.enable(gl.DEPTH_TEST);
|
|
345
|
-
updateInternal(group, camera, depthTexture, 2 /* Transparent */, false);
|
|
376
|
+
updateInternal(group, camera, depthTexture, 2 /* Mask.Transparent */, false);
|
|
346
377
|
var renderables = group.renderables;
|
|
347
378
|
if (transparentBackground) {
|
|
348
379
|
state.blendFunc(gl.ONE, gl.ONE_MINUS_SRC_ALPHA);
|
|
@@ -355,7 +386,7 @@ var Renderer;
|
|
|
355
386
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
356
387
|
var r = renderables[i];
|
|
357
388
|
if (!r.state.opaque && r.state.writeDepth) {
|
|
358
|
-
renderObject(r, 'colorBlended', 0 /* None */);
|
|
389
|
+
renderObject(r, 'colorBlended', 0 /* Flag.None */);
|
|
359
390
|
}
|
|
360
391
|
}
|
|
361
392
|
state.depthMask(false);
|
|
@@ -365,34 +396,42 @@ var Renderer;
|
|
|
365
396
|
if ((_a = r.values.uDoubleSided) === null || _a === void 0 ? void 0 : _a.ref.value) {
|
|
366
397
|
// render frontfaces and backfaces separately to avoid artefacts
|
|
367
398
|
if (((_b = r.values.dTransparentBackfaces) === null || _b === void 0 ? void 0 : _b.ref.value) !== 'opaque') {
|
|
368
|
-
renderObject(r, 'colorBlended', 2 /* BlendedBack */);
|
|
399
|
+
renderObject(r, 'colorBlended', 2 /* Flag.BlendedBack */);
|
|
369
400
|
}
|
|
370
|
-
renderObject(r, 'colorBlended', 1 /* BlendedFront */);
|
|
401
|
+
renderObject(r, 'colorBlended', 1 /* Flag.BlendedFront */);
|
|
371
402
|
}
|
|
372
403
|
else {
|
|
373
|
-
renderObject(r, 'colorBlended', 0 /* None */);
|
|
404
|
+
renderObject(r, 'colorBlended', 0 /* Flag.None */);
|
|
374
405
|
}
|
|
375
406
|
}
|
|
376
407
|
}
|
|
408
|
+
if (isTimingMode)
|
|
409
|
+
ctx.timer.markEnd('Renderer.renderBlendedTransparent');
|
|
377
410
|
};
|
|
378
411
|
var renderBlendedVolume = function (group, camera, depthTexture) {
|
|
412
|
+
if (isTimingMode)
|
|
413
|
+
ctx.timer.mark('Renderer.renderBlendedVolume');
|
|
379
414
|
state.blendFunc(gl.ONE, gl.ONE_MINUS_SRC_ALPHA);
|
|
380
415
|
state.enable(gl.BLEND);
|
|
381
|
-
updateInternal(group, camera, depthTexture, 2 /* Transparent */, false);
|
|
416
|
+
updateInternal(group, camera, depthTexture, 2 /* Mask.Transparent */, false);
|
|
382
417
|
var renderables = group.renderables;
|
|
383
418
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
384
419
|
var r = renderables[i];
|
|
385
420
|
if (r.values.dGeometryType.ref.value === 'directVolume') {
|
|
386
|
-
renderObject(r, 'colorBlended', 0 /* None */);
|
|
421
|
+
renderObject(r, 'colorBlended', 0 /* Flag.None */);
|
|
387
422
|
}
|
|
388
423
|
}
|
|
424
|
+
if (isTimingMode)
|
|
425
|
+
ctx.timer.markEnd('Renderer.renderBlendedVolume');
|
|
389
426
|
};
|
|
390
427
|
var renderWboitOpaque = function (group, camera, depthTexture) {
|
|
391
428
|
var _a, _b, _c;
|
|
429
|
+
if (isTimingMode)
|
|
430
|
+
ctx.timer.mark('Renderer.renderWboitOpaque');
|
|
392
431
|
state.disable(gl.BLEND);
|
|
393
432
|
state.enable(gl.DEPTH_TEST);
|
|
394
433
|
state.depthMask(true);
|
|
395
|
-
updateInternal(group, camera, depthTexture, 1 /* Opaque */, false);
|
|
434
|
+
updateInternal(group, camera, depthTexture, 1 /* Mask.Opaque */, false);
|
|
396
435
|
var renderables = group.renderables;
|
|
397
436
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
398
437
|
var r = renderables[i];
|
|
@@ -400,13 +439,17 @@ var Renderer;
|
|
|
400
439
|
// uAlpha is updated in "render" so we need to recompute it here
|
|
401
440
|
var alpha = clamp(r.values.alpha.ref.value * r.state.alphaFactor, 0, 1);
|
|
402
441
|
if ((alpha === 1 && r.values.transparencyAverage.ref.value !== 1 && r.values.dGeometryType.ref.value !== 'directVolume' && ((_a = r.values.dPointStyle) === null || _a === void 0 ? void 0 : _a.ref.value) !== 'fuzzy' && !((_b = r.values.dXrayShaded) === null || _b === void 0 ? void 0 : _b.ref.value)) || ((_c = r.values.dTransparentBackfaces) === null || _c === void 0 ? void 0 : _c.ref.value) === 'opaque') {
|
|
403
|
-
renderObject(r, 'colorWboit', 0 /* None */);
|
|
442
|
+
renderObject(r, 'colorWboit', 0 /* Flag.None */);
|
|
404
443
|
}
|
|
405
444
|
}
|
|
445
|
+
if (isTimingMode)
|
|
446
|
+
ctx.timer.markEnd('Renderer.renderWboitOpaque');
|
|
406
447
|
};
|
|
407
448
|
var renderWboitTransparent = function (group, camera, depthTexture) {
|
|
408
449
|
var _a, _b;
|
|
409
|
-
|
|
450
|
+
if (isTimingMode)
|
|
451
|
+
ctx.timer.mark('Renderer.renderWboitTransparent');
|
|
452
|
+
updateInternal(group, camera, depthTexture, 2 /* Mask.Transparent */, false);
|
|
410
453
|
var renderables = group.renderables;
|
|
411
454
|
for (var i = 0, il = renderables.length; i < il; ++i) {
|
|
412
455
|
var r = renderables[i];
|
|
@@ -414,9 +457,11 @@ var Renderer;
|
|
|
414
457
|
// uAlpha is updated in "render" so we need to recompute it here
|
|
415
458
|
var alpha = clamp(r.values.alpha.ref.value * r.state.alphaFactor, 0, 1);
|
|
416
459
|
if (alpha < 1 || r.values.transparencyAverage.ref.value > 0 || r.values.dGeometryType.ref.value === 'directVolume' || ((_a = r.values.dPointStyle) === null || _a === void 0 ? void 0 : _a.ref.value) === 'fuzzy' || !!r.values.uBackgroundColor || ((_b = r.values.dXrayShaded) === null || _b === void 0 ? void 0 : _b.ref.value)) {
|
|
417
|
-
renderObject(r, 'colorWboit', 0 /* None */);
|
|
460
|
+
renderObject(r, 'colorWboit', 0 /* Flag.None */);
|
|
418
461
|
}
|
|
419
462
|
}
|
|
463
|
+
if (isTimingMode)
|
|
464
|
+
ctx.timer.markEnd('Renderer.renderWboitTransparent');
|
|
420
465
|
};
|
|
421
466
|
return {
|
|
422
467
|
clear: function (toBackgroundColor, ignoreTransparentBackground) {
|
package/lib/mol-gl/scene.js
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
export declare const assign_color_varying = "\n#if defined(dRenderVariant_color)\n #if defined(dColorType_attribute)\n vColor.rgb = aColor;\n #elif defined(dColorType_instance)\n vColor.rgb = readFromTexture(tColor, aInstance, uColorTexDim).rgb;\n #elif defined(dColorType_group)\n vColor.rgb = readFromTexture(tColor, group, uColorTexDim).rgb;\n #elif defined(dColorType_groupInstance)\n vColor.rgb = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim).rgb;\n #elif defined(dColorType_vertex)\n vColor.rgb = readFromTexture(tColor, VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_vertexInstance)\n vColor.rgb = readFromTexture(tColor, int(aInstance) * uVertexCount + VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_volume)\n vec3 cgridPos = (uColorGridTransform.w * (position - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #elif defined(dColorType_volumeInstance)\n vec3 cgridPos = (uColorGridTransform.w * (vModelPosition - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #endif\n\n #ifdef dUsePalette\n vPaletteV = ((vColor.r * 256.0 * 256.0 * 255.0 + vColor.g * 256.0 * 255.0 + vColor.b * 255.0) - 1.0) / 16777215.0;\n #endif\n\n #ifdef dOverpaint\n #if defined(dOverpaintType_groupInstance)\n vOverpaint = readFromTexture(tOverpaint, aInstance * float(uGroupCount) + group, uOverpaintTexDim);\n #elif defined(dOverpaintType_vertexInstance)\n vOverpaint = readFromTexture(tOverpaint, int(aInstance) * uVertexCount + VertexID, uOverpaintTexDim);\n #elif defined(dOverpaintType_volumeInstance)\n vec3 ogridPos = (uOverpaintGridTransform.w * (vModelPosition - uOverpaintGridTransform.xyz)) / uOverpaintGridDim;\n vOverpaint = texture3dFrom2dLinear(tOverpaintGrid, ogridPos, uOverpaintGridDim, uOverpaintTexDim);\n #endif\n\n // pre-mix to avoid darkening due to empty overpaint\n #ifdef dColorType_uniform\n vOverpaint.rgb = mix(uColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #else\n vOverpaint.rgb = mix(vColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #endif\n #endif\n\n #ifdef dSubstance\n #if defined(dSubstanceType_groupInstance)\n vSubstance = readFromTexture(tSubstance, aInstance * float(uGroupCount) + group, uSubstanceTexDim);\n #elif defined(dSubstanceType_vertexInstance)\n vSubstance = readFromTexture(tSubstance, int(aInstance) * uVertexCount + VertexID, uSubstanceTexDim);\n #elif defined(dSubstanceType_volumeInstance)\n vec3 sgridPos = (uSubstanceGridTransform.w * (vModelPosition - uSubstanceGridTransform.xyz)) / uSubstanceGridDim;\n vSubstance = texture3dFrom2dLinear(tSubstanceGrid, sgridPos, uSubstanceGridDim, uSubstanceTexDim);\n #endif\n\n // pre-mix to avoid artifacts due to empty substance\n vSubstance.rgb = mix(vec3(uMetalness, uRoughness, uBumpiness), vSubstance.rgb, vSubstance.a);\n #endif\n#elif defined(dRenderVariant_pick)\n if (uPickType == 1) {\n
|
|
1
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+
export declare const assign_color_varying = "\n#if defined(dRenderVariant_color)\n #if defined(dColorType_attribute)\n vColor.rgb = aColor;\n #elif defined(dColorType_instance)\n vColor.rgb = readFromTexture(tColor, aInstance, uColorTexDim).rgb;\n #elif defined(dColorType_group)\n vColor.rgb = readFromTexture(tColor, group, uColorTexDim).rgb;\n #elif defined(dColorType_groupInstance)\n vColor.rgb = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim).rgb;\n #elif defined(dColorType_vertex)\n vColor.rgb = readFromTexture(tColor, VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_vertexInstance)\n vColor.rgb = readFromTexture(tColor, int(aInstance) * uVertexCount + VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_volume)\n vec3 cgridPos = (uColorGridTransform.w * (position - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #elif defined(dColorType_volumeInstance)\n vec3 cgridPos = (uColorGridTransform.w * (vModelPosition - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #endif\n\n #ifdef dUsePalette\n vPaletteV = ((vColor.r * 256.0 * 256.0 * 255.0 + vColor.g * 256.0 * 255.0 + vColor.b * 255.0) - 1.0) / 16777215.0;\n #endif\n\n #ifdef dOverpaint\n #if defined(dOverpaintType_groupInstance)\n vOverpaint = readFromTexture(tOverpaint, aInstance * float(uGroupCount) + group, uOverpaintTexDim);\n #elif defined(dOverpaintType_vertexInstance)\n vOverpaint = readFromTexture(tOverpaint, int(aInstance) * uVertexCount + VertexID, uOverpaintTexDim);\n #elif defined(dOverpaintType_volumeInstance)\n vec3 ogridPos = (uOverpaintGridTransform.w * (vModelPosition - uOverpaintGridTransform.xyz)) / uOverpaintGridDim;\n vOverpaint = texture3dFrom2dLinear(tOverpaintGrid, ogridPos, uOverpaintGridDim, uOverpaintTexDim);\n #endif\n\n // pre-mix to avoid darkening due to empty overpaint\n #ifdef dColorType_uniform\n vOverpaint.rgb = mix(uColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #else\n vOverpaint.rgb = mix(vColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #endif\n #endif\n\n #ifdef dSubstance\n #if defined(dSubstanceType_groupInstance)\n vSubstance = readFromTexture(tSubstance, aInstance * float(uGroupCount) + group, uSubstanceTexDim);\n #elif defined(dSubstanceType_vertexInstance)\n vSubstance = readFromTexture(tSubstance, int(aInstance) * uVertexCount + VertexID, uSubstanceTexDim);\n #elif defined(dSubstanceType_volumeInstance)\n vec3 sgridPos = (uSubstanceGridTransform.w * (vModelPosition - uSubstanceGridTransform.xyz)) / uSubstanceGridDim;\n vSubstance = texture3dFrom2dLinear(tSubstanceGrid, sgridPos, uSubstanceGridDim, uSubstanceTexDim);\n #endif\n\n // pre-mix to avoid artifacts due to empty substance\n vSubstance.rgb = mix(vec3(uMetalness, uRoughness, uBumpiness), vSubstance.rgb, vSubstance.a);\n #endif\n#elif defined(dRenderVariant_pick)\n #ifdef requiredDrawBuffers\n vObject = vec4(packIntToRGB(float(uObjectId)), 1.0);\n vInstance = vec4(packIntToRGB(aInstance), 1.0);\n vGroup = vec4(packIntToRGB(group), 1.0);\n #else\n if (uPickType == 1) {\n vColor = vec4(packIntToRGB(float(uObjectId)), 1.0);\n } else if (uPickType == 2) {\n vColor = vec4(packIntToRGB(aInstance), 1.0);\n } else {\n vColor = vec4(packIntToRGB(group), 1.0);\n }\n #endif\n#endif\n\n#ifdef dTransparency\n vGroup = group;\n\n #if defined(dTransparencyType_groupInstance)\n vTransparency = readFromTexture(tTransparency, aInstance * float(uGroupCount) + group, uTransparencyTexDim).a;\n #elif defined(dTransparencyType_vertexInstance)\n vTransparency = readFromTexture(tTransparency, int(aInstance) * uVertexCount + VertexID, uTransparencyTexDim).a;\n #elif defined(dTransparencyType_volumeInstance)\n vec3 tgridPos = (uTransparencyGridTransform.w * (vModelPosition - uTransparencyGridTransform.xyz)) / uTransparencyGridDim;\n vTransparency = texture3dFrom2dLinear(tTransparencyGrid, tgridPos, uTransparencyGridDim, uTransparencyTexDim).a;\n #endif\n#endif\n";
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export var assign_color_varying = "\n#if defined(dRenderVariant_color)\n #if defined(dColorType_attribute)\n vColor.rgb = aColor;\n #elif defined(dColorType_instance)\n vColor.rgb = readFromTexture(tColor, aInstance, uColorTexDim).rgb;\n #elif defined(dColorType_group)\n vColor.rgb = readFromTexture(tColor, group, uColorTexDim).rgb;\n #elif defined(dColorType_groupInstance)\n vColor.rgb = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim).rgb;\n #elif defined(dColorType_vertex)\n vColor.rgb = readFromTexture(tColor, VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_vertexInstance)\n vColor.rgb = readFromTexture(tColor, int(aInstance) * uVertexCount + VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_volume)\n vec3 cgridPos = (uColorGridTransform.w * (position - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #elif defined(dColorType_volumeInstance)\n vec3 cgridPos = (uColorGridTransform.w * (vModelPosition - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #endif\n\n #ifdef dUsePalette\n vPaletteV = ((vColor.r * 256.0 * 256.0 * 255.0 + vColor.g * 256.0 * 255.0 + vColor.b * 255.0) - 1.0) / 16777215.0;\n #endif\n\n #ifdef dOverpaint\n #if defined(dOverpaintType_groupInstance)\n vOverpaint = readFromTexture(tOverpaint, aInstance * float(uGroupCount) + group, uOverpaintTexDim);\n #elif defined(dOverpaintType_vertexInstance)\n vOverpaint = readFromTexture(tOverpaint, int(aInstance) * uVertexCount + VertexID, uOverpaintTexDim);\n #elif defined(dOverpaintType_volumeInstance)\n vec3 ogridPos = (uOverpaintGridTransform.w * (vModelPosition - uOverpaintGridTransform.xyz)) / uOverpaintGridDim;\n vOverpaint = texture3dFrom2dLinear(tOverpaintGrid, ogridPos, uOverpaintGridDim, uOverpaintTexDim);\n #endif\n\n // pre-mix to avoid darkening due to empty overpaint\n #ifdef dColorType_uniform\n vOverpaint.rgb = mix(uColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #else\n vOverpaint.rgb = mix(vColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #endif\n #endif\n\n #ifdef dSubstance\n #if defined(dSubstanceType_groupInstance)\n vSubstance = readFromTexture(tSubstance, aInstance * float(uGroupCount) + group, uSubstanceTexDim);\n #elif defined(dSubstanceType_vertexInstance)\n vSubstance = readFromTexture(tSubstance, int(aInstance) * uVertexCount + VertexID, uSubstanceTexDim);\n #elif defined(dSubstanceType_volumeInstance)\n vec3 sgridPos = (uSubstanceGridTransform.w * (vModelPosition - uSubstanceGridTransform.xyz)) / uSubstanceGridDim;\n vSubstance = texture3dFrom2dLinear(tSubstanceGrid, sgridPos, uSubstanceGridDim, uSubstanceTexDim);\n #endif\n\n // pre-mix to avoid artifacts due to empty substance\n vSubstance.rgb = mix(vec3(uMetalness, uRoughness, uBumpiness), vSubstance.rgb, vSubstance.a);\n #endif\n#elif defined(dRenderVariant_pick)\n if (uPickType == 1) {\n
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export var assign_color_varying = "\n#if defined(dRenderVariant_color)\n #if defined(dColorType_attribute)\n vColor.rgb = aColor;\n #elif defined(dColorType_instance)\n vColor.rgb = readFromTexture(tColor, aInstance, uColorTexDim).rgb;\n #elif defined(dColorType_group)\n vColor.rgb = readFromTexture(tColor, group, uColorTexDim).rgb;\n #elif defined(dColorType_groupInstance)\n vColor.rgb = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim).rgb;\n #elif defined(dColorType_vertex)\n vColor.rgb = readFromTexture(tColor, VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_vertexInstance)\n vColor.rgb = readFromTexture(tColor, int(aInstance) * uVertexCount + VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_volume)\n vec3 cgridPos = (uColorGridTransform.w * (position - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #elif defined(dColorType_volumeInstance)\n vec3 cgridPos = (uColorGridTransform.w * (vModelPosition - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #endif\n\n #ifdef dUsePalette\n vPaletteV = ((vColor.r * 256.0 * 256.0 * 255.0 + vColor.g * 256.0 * 255.0 + vColor.b * 255.0) - 1.0) / 16777215.0;\n #endif\n\n #ifdef dOverpaint\n #if defined(dOverpaintType_groupInstance)\n vOverpaint = readFromTexture(tOverpaint, aInstance * float(uGroupCount) + group, uOverpaintTexDim);\n #elif defined(dOverpaintType_vertexInstance)\n vOverpaint = readFromTexture(tOverpaint, int(aInstance) * uVertexCount + VertexID, uOverpaintTexDim);\n #elif defined(dOverpaintType_volumeInstance)\n vec3 ogridPos = (uOverpaintGridTransform.w * (vModelPosition - uOverpaintGridTransform.xyz)) / uOverpaintGridDim;\n vOverpaint = texture3dFrom2dLinear(tOverpaintGrid, ogridPos, uOverpaintGridDim, uOverpaintTexDim);\n #endif\n\n // pre-mix to avoid darkening due to empty overpaint\n #ifdef dColorType_uniform\n vOverpaint.rgb = mix(uColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #else\n vOverpaint.rgb = mix(vColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #endif\n #endif\n\n #ifdef dSubstance\n #if defined(dSubstanceType_groupInstance)\n vSubstance = readFromTexture(tSubstance, aInstance * float(uGroupCount) + group, uSubstanceTexDim);\n #elif defined(dSubstanceType_vertexInstance)\n vSubstance = readFromTexture(tSubstance, int(aInstance) * uVertexCount + VertexID, uSubstanceTexDim);\n #elif defined(dSubstanceType_volumeInstance)\n vec3 sgridPos = (uSubstanceGridTransform.w * (vModelPosition - uSubstanceGridTransform.xyz)) / uSubstanceGridDim;\n vSubstance = texture3dFrom2dLinear(tSubstanceGrid, sgridPos, uSubstanceGridDim, uSubstanceTexDim);\n #endif\n\n // pre-mix to avoid artifacts due to empty substance\n vSubstance.rgb = mix(vec3(uMetalness, uRoughness, uBumpiness), vSubstance.rgb, vSubstance.a);\n #endif\n#elif defined(dRenderVariant_pick)\n #ifdef requiredDrawBuffers\n vObject = vec4(packIntToRGB(float(uObjectId)), 1.0);\n vInstance = vec4(packIntToRGB(aInstance), 1.0);\n vGroup = vec4(packIntToRGB(group), 1.0);\n #else\n if (uPickType == 1) {\n vColor = vec4(packIntToRGB(float(uObjectId)), 1.0);\n } else if (uPickType == 2) {\n vColor = vec4(packIntToRGB(aInstance), 1.0);\n } else {\n vColor = vec4(packIntToRGB(group), 1.0);\n }\n #endif\n#endif\n\n#ifdef dTransparency\n vGroup = group;\n\n #if defined(dTransparencyType_groupInstance)\n vTransparency = readFromTexture(tTransparency, aInstance * float(uGroupCount) + group, uTransparencyTexDim).a;\n #elif defined(dTransparencyType_vertexInstance)\n vTransparency = readFromTexture(tTransparency, int(aInstance) * uVertexCount + VertexID, uTransparencyTexDim).a;\n #elif defined(dTransparencyType_volumeInstance)\n vec3 tgridPos = (uTransparencyGridTransform.w * (vModelPosition - uTransparencyGridTransform.xyz)) / uTransparencyGridDim;\n vTransparency = texture3dFrom2dLinear(tTransparencyGrid, tgridPos, uTransparencyGridDim, uTransparencyTexDim).a;\n #endif\n#endif\n";
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