molstar 3.8.2 → 3.9.0

package/lib/commonjs/mol-theme/color/entity-id.js

@@ -52,10 +52,10 @@ function getEntityIdSerialMap(structure) {
 }
 function getEntityId(location) {
     switch (location.unit.kind) {
-        case 0 /* Atomic */:
+        case 0 /* Unit.Kind.Atomic */:
             return structure_1.StructureProperties.chain.label_entity_id(location);
-        case 1 /* Spheres */:
-        case 2 /* Gaussians */:
+        case 1 /* Unit.Kind.Spheres */:
+        case 2 /* Unit.Kind.Gaussians */:
             return structure_1.StructureProperties.coarse.entity_id(location);
     }
 }
@@ -104,7 +104,7 @@ exports.EntityIdColorTheme = EntityIdColorTheme;
 exports.EntityIdColorThemeProvider = {
     name: 'entity-id',
     label: 'Entity Id',
-    category: "Chain Property" /* Chain */,
+    category: "Chain Property" /* ColorTheme.Category.Chain */,
     factory: EntityIdColorTheme,
     getParams: getEntityIdColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.EntityIdColorThemeParams),

package/lib/commonjs/mol-theme/color/entity-source.js

@@ -54,9 +54,10 @@ function addSrc(seqToSrcByModelEntity, srcKeySerialMap, modelIndex, model, entit
         var gene = gene_src_gene ? gene_src_gene.value(j)[0] : '';
         var sK = srcKey(modelIndex, entityId, scientific_name.value(j), pdbx_src_id.value(j), plasmid, gene);
         // may not be given (= 0) indicating src is for the whole seq
-        var beg = pdbx_beg_seq_num.valueKind(j) === 0 /* Present */ ? pdbx_beg_seq_num.value(j) : 1;
-        var end = pdbx_end_seq_num.valueKind(j) === 0 /* Present */ ? pdbx_end_seq_num.value(j) : seqToSrc.length;
-        var srcIndex = void 0; // serial no starting from 1
+        var beg = pdbx_beg_seq_num.valueKind(j) === 0 /* Column.ValueKind.Present */ ? pdbx_beg_seq_num.value(j) : 1;
+        var end = pdbx_end_seq_num.valueKind(j) === 0 /* Column.ValueKind.Present */ ? pdbx_end_seq_num.value(j) : seqToSrc.length;
+        var srcIndex = // serial no starting from 1
+         void 0; // serial no starting from 1
         if (srcKeySerialMap.has(sK)) {
             srcIndex = srcKeySerialMap.get(sK);
         }
@@ -147,7 +148,7 @@ exports.EntitySourceColorTheme = EntitySourceColorTheme;
 exports.EntitySourceColorThemeProvider = {
     name: 'entity-source',
     label: 'Entity Source',
-    category: "Chain Property" /* Chain */,
+    category: "Chain Property" /* ColorTheme.Category.Chain */,
     factory: EntitySourceColorTheme,
     getParams: getEntitySourceColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.EntitySourceColorThemeParams),

package/lib/commonjs/mol-theme/color/hydrophobicity.js

@@ -87,7 +87,7 @@ exports.HydrophobicityColorTheme = HydrophobicityColorTheme;
 exports.HydrophobicityColorThemeProvider = {
     name: 'hydrophobicity',
     label: 'Hydrophobicity',
-    category: "Residue Property" /* Residue */,
+    category: "Residue Property" /* ColorTheme.Category.Residue */,
     factory: HydrophobicityColorTheme,
     getParams: getHydrophobicityColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.HydrophobicityColorThemeParams),

package/lib/commonjs/mol-theme/color/illustrative.js

@@ -69,7 +69,7 @@ exports.IllustrativeColorTheme = IllustrativeColorTheme;
 exports.IllustrativeColorThemeProvider = {
     name: 'illustrative',
     label: 'Illustrative',
-    category: "Miscellaneous" /* Misc */,
+    category: "Miscellaneous" /* ColorTheme.Category.Misc */,
     factory: IllustrativeColorTheme,
     getParams: getIllustrativeColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.IllustrativeColorThemeParams),

package/lib/commonjs/mol-theme/color/model-index.js

@@ -62,7 +62,7 @@ exports.ModelIndexColorTheme = ModelIndexColorTheme;
 exports.ModelIndexColorThemeProvider = {
     name: 'model-index',
     label: 'Model Index',
-    category: "Chain Property" /* Chain */,
+    category: "Chain Property" /* ColorTheme.Category.Chain */,
     factory: ModelIndexColorTheme,
     getParams: getModelIndexColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.ModelIndexColorThemeParams),

package/lib/commonjs/mol-theme/color/molecule-type.js

@@ -39,13 +39,13 @@ exports.getMoleculeTypeColorThemeParams = getMoleculeTypeColorThemeParams;
 function moleculeTypeColor(colorMap, unit, element) {
     var moleculeType = (0, util_1.getElementMoleculeType)(unit, element);
     switch (moleculeType) {
-        case 2 /* Water */: return colorMap.water;
-        case 3 /* Ion */: return colorMap.ion;
-        case 5 /* Protein */: return colorMap.protein;
-        case 6 /* RNA */: return colorMap.RNA;
-        case 7 /* DNA */: return colorMap.DNA;
-        case 8 /* PNA */: return colorMap.PNA;
-        case 9 /* Saccharide */: return colorMap.saccharide;
+        case 2 /* MoleculeType.Water */: return colorMap.water;
+        case 3 /* MoleculeType.Ion */: return colorMap.ion;
+        case 5 /* MoleculeType.Protein */: return colorMap.protein;
+        case 6 /* MoleculeType.RNA */: return colorMap.RNA;
+        case 7 /* MoleculeType.DNA */: return colorMap.DNA;
+        case 8 /* MoleculeType.PNA */: return colorMap.PNA;
+        case 9 /* MoleculeType.Saccharide */: return colorMap.saccharide;
     }
     return DefaultMoleculeTypeColor;
 }
@@ -76,7 +76,7 @@ exports.MoleculeTypeColorTheme = MoleculeTypeColorTheme;
 exports.MoleculeTypeColorThemeProvider = {
     name: 'molecule-type',
     label: 'Molecule Type',
-    category: "Residue Property" /* Residue */,
+    category: "Residue Property" /* ColorTheme.Category.Residue */,
     factory: MoleculeTypeColorTheme,
     getParams: getMoleculeTypeColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.MoleculeTypeColorThemeParams),

package/lib/commonjs/mol-theme/color/occupancy.js

@@ -57,7 +57,7 @@ exports.OccupancyColorTheme = OccupancyColorTheme;
 exports.OccupancyColorThemeProvider = {
     name: 'occupancy',
     label: 'Occupancy',
-    category: "Atom Property" /* Atom */,
+    category: "Atom Property" /* ColorTheme.Category.Atom */,
     factory: OccupancyColorTheme,
     getParams: getOccupancyColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.OccupancyColorThemeParams),

package/lib/commonjs/mol-theme/color/operator-hkl.js

@@ -105,7 +105,7 @@ exports.OperatorHklColorTheme = OperatorHklColorTheme;
 exports.OperatorHklColorThemeProvider = {
     name: 'operator-hkl',
     label: 'Operator HKL',
-    category: "Symmetry" /* Symmetry */,
+    category: "Symmetry" /* ColorTheme.Category.Symmetry */,
     factory: OperatorHklColorTheme,
     getParams: getOperatorHklColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.OperatorHklColorThemeParams),

package/lib/commonjs/mol-theme/color/operator-name.js

@@ -67,7 +67,7 @@ exports.OperatorNameColorTheme = OperatorNameColorTheme;
 exports.OperatorNameColorThemeProvider = {
     name: 'operator-name',
     label: 'Operator Name',
-    category: "Symmetry" /* Symmetry */,
+    category: "Symmetry" /* ColorTheme.Category.Symmetry */,
     factory: OperatorNameColorTheme,
     getParams: getOperatorNameColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.OperatorNameColorThemeParams),

package/lib/commonjs/mol-theme/color/partial-charge.js

@@ -54,7 +54,7 @@ exports.PartialChargeColorTheme = PartialChargeColorTheme;
 exports.PartialChargeColorThemeProvider = {
     name: 'partial-charge',
     label: 'Partial Charge',
-    category: "Atom Property" /* Atom */,
+    category: "Atom Property" /* ColorTheme.Category.Atom */,
     factory: PartialChargeColorTheme,
     getParams: getPartialChargeColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.PartialChargeColorThemeParams),

package/lib/commonjs/mol-theme/color/polymer-id.js

@@ -30,10 +30,10 @@ function getPolymerIdColorThemeParams(ctx) {
 exports.getPolymerIdColorThemeParams = getPolymerIdColorThemeParams;
 function getAsymId(unit) {
     switch (unit.kind) {
-        case 0 /* Atomic */:
+        case 0 /* Unit.Kind.Atomic */:
             return structure_1.StructureProperties.chain.label_asym_id;
-        case 1 /* Spheres */:
-        case 2 /* Gaussians */:
+        case 1 /* Unit.Kind.Spheres */:
+        case 2 /* Unit.Kind.Gaussians */:
             return structure_1.StructureProperties.coarse.asym_id;
     }
 }
@@ -117,7 +117,7 @@ exports.PolymerIdColorTheme = PolymerIdColorTheme;
 exports.PolymerIdColorThemeProvider = {
     name: 'polymer-id',
     label: 'Polymer Chain Id',
-    category: "Chain Property" /* Chain */,
+    category: "Chain Property" /* ColorTheme.Category.Chain */,
     factory: PolymerIdColorTheme,
     getParams: getPolymerIdColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerIdColorThemeParams),

package/lib/commonjs/mol-theme/color/polymer-index.js

@@ -77,7 +77,7 @@ exports.PolymerIndexColorTheme = PolymerIndexColorTheme;
 exports.PolymerIndexColorThemeProvider = {
     name: 'polymer-index',
     label: 'Polymer Chain Instance',
-    category: "Chain Property" /* Chain */,
+    category: "Chain Property" /* ColorTheme.Category.Chain */,
     factory: PolymerIndexColorTheme,
     getParams: getPolymerIndexColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.PolymerIndexColorThemeParams),

package/lib/commonjs/mol-theme/color/residue-name.js

@@ -129,7 +129,7 @@ exports.ResidueNameColorTheme = ResidueNameColorTheme;
 exports.ResidueNameColorThemeProvider = {
     name: 'residue-name',
     label: 'Residue Name',
-    category: "Residue Property" /* Residue */,
+    category: "Residue Property" /* ColorTheme.Category.Residue */,
     factory: ResidueNameColorTheme,
     getParams: getResidueNameColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.ResidueNameColorThemeParams),

package/lib/commonjs/mol-theme/color/secondary-structure.js

@@ -45,42 +45,42 @@ function getSecondaryStructureColorThemeParams(ctx) {
 }
 exports.getSecondaryStructureColorThemeParams = getSecondaryStructureColorThemeParams;
 function secondaryStructureColor(colorMap, unit, element, computedSecondaryStructure) {
-    var secStrucType = types_1.SecondaryStructureType.create(0 /* None */);
+    var secStrucType = types_1.SecondaryStructureType.create(0 /* SecondaryStructureType.Flag.None */);
     if (computedSecondaryStructure && structure_1.Unit.isAtomic(unit)) {
         var secondaryStructure = computedSecondaryStructure.get(unit.invariantId);
         if (secondaryStructure)
             secStrucType = secondaryStructure.type[secondaryStructure.getIndex(unit.residueIndex[element])];
     }
-    if (types_1.SecondaryStructureType.is(secStrucType, 2 /* Helix */)) {
-        if (types_1.SecondaryStructureType.is(secStrucType, 2048 /* Helix3Ten */)) {
+    if (types_1.SecondaryStructureType.is(secStrucType, 2 /* SecondaryStructureType.Flag.Helix */)) {
+        if (types_1.SecondaryStructureType.is(secStrucType, 2048 /* SecondaryStructureType.Flag.Helix3Ten */)) {
             return colorMap.threeTenHelix;
         }
-        else if (types_1.SecondaryStructureType.is(secStrucType, 32768 /* HelixPi */)) {
+        else if (types_1.SecondaryStructureType.is(secStrucType, 32768 /* SecondaryStructureType.Flag.HelixPi */)) {
             return colorMap.piHelix;
         }
         return colorMap.alphaHelix;
     }
-    else if (types_1.SecondaryStructureType.is(secStrucType, 4 /* Beta */)) {
+    else if (types_1.SecondaryStructureType.is(secStrucType, 4 /* SecondaryStructureType.Flag.Beta */)) {
         return colorMap.betaStrand;
     }
-    else if (types_1.SecondaryStructureType.is(secStrucType, 8 /* Bend */)) {
+    else if (types_1.SecondaryStructureType.is(secStrucType, 8 /* SecondaryStructureType.Flag.Bend */)) {
         return colorMap.bend;
     }
-    else if (types_1.SecondaryStructureType.is(secStrucType, 16 /* Turn */)) {
+    else if (types_1.SecondaryStructureType.is(secStrucType, 16 /* SecondaryStructureType.Flag.Turn */)) {
         return colorMap.turn;
     }
     else {
         var moleculeType = (0, util_1.getElementMoleculeType)(unit, element);
-        if (moleculeType === 7 /* DNA */) {
+        if (moleculeType === 7 /* MoleculeType.DNA */) {
             return colorMap.dna;
         }
-        else if (moleculeType === 6 /* RNA */) {
+        else if (moleculeType === 6 /* MoleculeType.RNA */) {
             return colorMap.rna;
         }
-        else if (moleculeType === 9 /* Saccharide */) {
+        else if (moleculeType === 9 /* MoleculeType.Saccharide */) {
             return colorMap.carbohydrate;
         }
-        else if (moleculeType === 5 /* Protein */) {
+        else if (moleculeType === 5 /* MoleculeType.Protein */) {
             return colorMap.coil;
         }
     }
@@ -117,7 +117,7 @@ exports.SecondaryStructureColorTheme = SecondaryStructureColorTheme;
 exports.SecondaryStructureColorThemeProvider = {
     name: 'secondary-structure',
     label: 'Secondary Structure',
-    category: "Residue Property" /* Residue */,
+    category: "Residue Property" /* ColorTheme.Category.Residue */,
     factory: SecondaryStructureColorTheme,
     getParams: getSecondaryStructureColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.SecondaryStructureColorThemeParams),

package/lib/commonjs/mol-theme/color/sequence-id.js

@@ -21,13 +21,13 @@ exports.getSequenceIdColorThemeParams = getSequenceIdColorThemeParams;
 function getSeqId(unit, element) {
     var model = unit.model;
     switch (unit.kind) {
-        case 0 /* Atomic */:
+        case 0 /* Unit.Kind.Atomic */:
             var residueIndex = model.atomicHierarchy.residueAtomSegments.index[element];
             return model.atomicHierarchy.residues.label_seq_id.value(residueIndex);
-        case 1 /* Spheres */:
+        case 1 /* Unit.Kind.Spheres */:
             return Math.round((model.coarseHierarchy.spheres.seq_id_begin.value(element) +
                 model.coarseHierarchy.spheres.seq_id_end.value(element)) / 2);
-        case 2 /* Gaussians */:
+        case 2 /* Unit.Kind.Gaussians */:
             return Math.round((model.coarseHierarchy.gaussians.seq_id_begin.value(element) +
                 model.coarseHierarchy.gaussians.seq_id_end.value(element)) / 2);
     }
@@ -36,14 +36,14 @@ function getSequenceLength(unit, element) {
     var model = unit.model;
     var entityId = '';
     switch (unit.kind) {
-        case 0 /* Atomic */:
+        case 0 /* Unit.Kind.Atomic */:
             var chainIndex = model.atomicHierarchy.chainAtomSegments.index[element];
             entityId = model.atomicHierarchy.chains.label_entity_id.value(chainIndex);
             break;
-        case 1 /* Spheres */:
+        case 1 /* Unit.Kind.Spheres */:
             entityId = model.coarseHierarchy.spheres.entity_id.value(element);
             break;
-        case 2 /* Gaussians */:
+        case 2 /* Unit.Kind.Gaussians */:
             entityId = model.coarseHierarchy.gaussians.entity_id.value(element);
             break;
     }
@@ -102,7 +102,7 @@ exports.SequenceIdColorTheme = SequenceIdColorTheme;
 exports.SequenceIdColorThemeProvider = {
     name: 'sequence-id',
     label: 'Sequence Id',
-    category: "Residue Property" /* Residue */,
+    category: "Residue Property" /* ColorTheme.Category.Residue */,
     factory: SequenceIdColorTheme,
     getParams: getSequenceIdColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.SequenceIdColorThemeParams),

package/lib/commonjs/mol-theme/color/shape-group.js

@@ -34,7 +34,7 @@ exports.ShapeGroupColorTheme = ShapeGroupColorTheme;
 exports.ShapeGroupColorThemeProvider = {
     name: 'shape-group',
     label: 'Shape Group',
-    category: "Miscellaneous" /* Misc */,
+    category: "Miscellaneous" /* ColorTheme.Category.Misc */,
     factory: ShapeGroupColorTheme,
     getParams: getShapeGroupColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.ShapeGroupColorThemeParams),

package/lib/commonjs/mol-theme/color/uncertainty.js

@@ -61,7 +61,7 @@ exports.UncertaintyColorTheme = UncertaintyColorTheme;
 exports.UncertaintyColorThemeProvider = {
     name: 'uncertainty',
     label: 'Uncertainty/Disorder',
-    category: "Atom Property" /* Atom */,
+    category: "Atom Property" /* ColorTheme.Category.Atom */,
     factory: UncertaintyColorTheme,
     getParams: getUncertaintyColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.UncertaintyColorThemeParams),

package/lib/commonjs/mol-theme/color/uniform.js

@@ -34,7 +34,7 @@ exports.UniformColorTheme = UniformColorTheme;
 exports.UniformColorThemeProvider = {
     name: 'uniform',
     label: 'Uniform',
-    category: "Miscellaneous" /* Misc */,
+    category: "Miscellaneous" /* ColorTheme.Category.Misc */,
     factory: UniformColorTheme,
     getParams: getUniformColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.UniformColorThemeParams),

package/lib/commonjs/mol-theme/color/unit-index.js

@@ -64,7 +64,7 @@ exports.UnitIndexColorTheme = UnitIndexColorTheme;
 exports.UnitIndexColorThemeProvider = {
     name: 'unit-index',
     label: 'Chain Instance',
-    category: "Chain Property" /* Chain */,
+    category: "Chain Property" /* ColorTheme.Category.Chain */,
     factory: UnitIndexColorTheme,
     getParams: getUnitIndexColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.UnitIndexColorThemeParams),

package/lib/commonjs/mol-theme/color/volume-value.js

@@ -46,7 +46,7 @@ exports.VolumeValueColorTheme = VolumeValueColorTheme;
 exports.VolumeValueColorThemeProvider = {
     name: 'volume-value',
     label: 'Volume Value',
-    category: "Miscellaneous" /* Misc */,
+    category: "Miscellaneous" /* ColorTheme.Category.Misc */,
     factory: VolumeValueColorTheme,
     getParams: getVolumeValueColorThemeParams,
     defaultValues: param_definition_1.ParamDefinition.getDefaultValues(exports.VolumeValueColorThemeParams),

package/lib/commonjs/mol-theme/label.js

@@ -113,7 +113,7 @@ function _structureElementStatsLabel(stats, countsOnly, hidePrefix, condensed, r
     else if (!countsOnly && elementCount === 0 && residueCount === 0 && chainCount === 1) {
         var unit = stats.firstChainLoc.unit;
         var granularity = (structure_1.Unit.isAtomic(unit) && getResidueCount(unit) === 1)
-            ? 'residue' : structure_1.Unit.Traits.is(unit.traits, 1 /* MultiChain */)
+            ? 'residue' : structure_1.Unit.Traits.is(unit.traits, 1 /* Unit.Trait.MultiChain */)
             ? 'residue' : 'chain';
         return elementLabel(stats.firstChainLoc, { hidePrefix: hidePrefix, condensed: condensed, granularity: granularity, reverse: reverse });
     }
@@ -260,7 +260,7 @@ function _atomicElementLabel(location, granularity, hideOccupancy) {
     var rI = structure_1.StructureElement.Location.residueIndex(location);
     var label_asym_id = structure_1.StructureProperties.chain.label_asym_id(location);
     var auth_asym_id = structure_1.StructureProperties.chain.auth_asym_id(location);
-    var has_label_seq_id = location.unit.model.atomicHierarchy.residues.label_seq_id.valueKind(rI) === 0 /* Present */;
+    var has_label_seq_id = location.unit.model.atomicHierarchy.residues.label_seq_id.valueKind(rI) === 0 /* Column.ValueKind.Present */;
     var label_seq_id = structure_1.StructureProperties.residue.label_seq_id(location);
     var auth_seq_id = structure_1.StructureProperties.residue.auth_seq_id(location);
     var ins_code = structure_1.StructureProperties.residue.pdbx_PDB_ins_code(location);
@@ -287,7 +287,7 @@ function _atomicElementLabel(location, granularity, hideOccupancy) {
                 label.push("<b>".concat(label_asym_id, "</b>"));
             }
             else {
-                if (granularity === 'chain' && structure_1.Unit.Traits.is(location.unit.traits, 1 /* MultiChain */)) {
+                if (granularity === 'chain' && structure_1.Unit.Traits.is(location.unit.traits, 1 /* Unit.Trait.MultiChain */)) {
                     label.push("<small>[auth</small> <b>".concat(auth_asym_id, "</b><small>]</small>"));
                 }
                 else {

package/lib/commonjs/mol-util/binding.js

@@ -82,13 +82,13 @@ function formatButtons(buttons) {
         s.push('mouse hover');
     }
     else {
-        if (B.has(buttons, 1 /* Primary */))
+        if (B.has(buttons, 1 /* B.Flag.Primary */))
             s.push('left mouse button');
-        if (B.has(buttons, 2 /* Secondary */))
+        if (B.has(buttons, 2 /* B.Flag.Secondary */))
             s.push('right mouse button');
-        if (B.has(buttons, 4 /* Auxilary */))
+        if (B.has(buttons, 4 /* B.Flag.Auxilary */))
             s.push('wheel/middle mouse button');
-        if (B.has(buttons, 8 /* Forth */))
+        if (B.has(buttons, 8 /* B.Flag.Forth */))
             s.push('three fingers');
     }
     return s.join(' + ');

package/lib/commonjs/mol-util/debug.d.ts

@@ -13,6 +13,11 @@ declare let isProductionMode: boolean;
  * mostly used in `mol-gl` and in valence-model calculation
  */
 declare let isDebugMode: boolean;
-export { isProductionMode, isDebugMode };
+/**
+ * set to true to gather timings, mostly used in `mol-gl`
+ */
+declare let isTimingMode: boolean;
+export { isProductionMode, isDebugMode, isTimingMode };
 export declare function setProductionMode(value?: boolean): void;
 export declare function setDebugMode(value?: boolean): void;
+export declare function setTimingMode(value?: boolean): void;

package/lib/commonjs/mol-util/debug.js

@@ -5,7 +5,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.setDebugMode = exports.setProductionMode = exports.isDebugMode = exports.isProductionMode = void 0;
+exports.setTimingMode = exports.setDebugMode = exports.setProductionMode = exports.isTimingMode = exports.isDebugMode = exports.isProductionMode = void 0;
 /**
  * on node `process.env.NODE_ENV` is available, in webpack build it is automatically set
  * by the DefinePlugin to the webpack `mode` value
@@ -33,6 +33,11 @@ var isDebugMode = function getIsDebug() {
     }
 }();
 exports.isDebugMode = isDebugMode;
+/**
+ * set to true to gather timings, mostly used in `mol-gl`
+ */
+var isTimingMode = false;
+exports.isTimingMode = isTimingMode;
 function setProductionMode(value) {
     if (typeof value !== 'undefined')
         exports.isProductionMode = isProductionMode = value;
@@ -43,3 +48,8 @@ function setDebugMode(value) {
         exports.isDebugMode = isDebugMode = value;
 }
 exports.setDebugMode = setDebugMode;
+function setTimingMode(value) {
+    if (typeof value !== 'undefined')
+        exports.isTimingMode = isTimingMode = value;
+}
+exports.setTimingMode = setTimingMode;

package/lib/commonjs/mol-util/input/input-observer.js

@@ -155,10 +155,10 @@ var InputObserver;
         function getModifierKeys() {
             return tslib_1.__assign({}, modifierKeys);
         }
-        var dragging = 0 /* Stopped */;
+        var dragging = 0 /* DraggingState.Stopped */;
         var disposed = false;
-        var buttons = ButtonsType.create(0 /* None */);
-        var button = 0 /* None */;
+        var buttons = ButtonsType.create(0 /* ButtonsType.Flag.None */);
+        var button = 0 /* ButtonsType.Flag.None */;
         var isInside = false;
         var events = createEvents();
         var drag = events.drag, interactionEnd = events.interactionEnd, wheel = events.wheel, pinch = events.pinch, gesture = events.gesture, click = events.click, move = events.move, leave = events.leave, enter = events.enter, resize = events.resize, modifiers = events.modifiers, key = events.key;
@@ -303,12 +303,12 @@ var InputObserver;
         function onTouchStart(ev) {
             ev.preventDefault();
             if (ev.touches.length === 1) {
-                buttons = button = 1 /* Primary */;
+                buttons = button = 1 /* ButtonsType.Flag.Primary */;
                 onPointerDown(ev.touches[0]);
             }
             else if (ev.touches.length === 2) {
-                buttons = 2 /* Secondary */ & 4 /* Auxilary */;
-                button = 2 /* Secondary */;
+                buttons = 2 /* ButtonsType.Flag.Secondary */ & 4 /* ButtonsType.Flag.Auxilary */;
+                button = 2 /* ButtonsType.Flag.Secondary */;
                 onPointerDown(getCenterTouch(ev));
                 var touchDistance = getTouchDistance(ev);
                 lastTouchDistance = touchDistance;
@@ -324,7 +324,7 @@ var InputObserver;
                 });
             }
             else if (ev.touches.length === 3) {
-                buttons = button = 8 /* Forth */;
+                buttons = button = 8 /* ButtonsType.Flag.Forth */;
                 onPointerDown(getCenterTouch(ev));
             }
         }
@@ -332,7 +332,7 @@ var InputObserver;
             endDrag();
         }
         function onTouchMove(ev) {
-            button = 0 /* None */;
+            button = 0 /* ButtonsType.Flag.None */;
             if (noPinchZoom) {
                 ev.preventDefault();
                 ev.stopPropagation();
@@ -342,18 +342,18 @@ var InputObserver;
                 }
             }
             if (ev.touches.length === 1) {
-                buttons = 1 /* Primary */;
+                buttons = 1 /* ButtonsType.Flag.Primary */;
                 onPointerMove(ev.touches[0]);
             }
             else if (ev.touches.length === 2) {
                 var touchDistance = getTouchDistance(ev);
                 var touchDelta = lastTouchDistance - touchDistance;
                 if (Math.abs(touchDelta) < 4) {
-                    buttons = 2 /* Secondary */;
+                    buttons = 2 /* ButtonsType.Flag.Secondary */;
                     onPointerMove(getCenterTouch(ev));
                 }
                 else {
-                    buttons = 4 /* Auxilary */;
+                    buttons = 4 /* ButtonsType.Flag.Auxilary */;
                     updateModifierKeys(ev);
                     var fraction = lastTouchDistance / touchDistance;
                     pinch.next({
@@ -371,7 +371,7 @@ var InputObserver;
                 lastTouchDistance = touchDistance;
             }
             else if (ev.touches.length === 3) {
-                buttons = 8 /* Forth */;
+                buttons = 8 /* ButtonsType.Flag.Forth */;
                 onPointerMove(getCenterTouch(ev));
             }
         }
@@ -379,7 +379,7 @@ var InputObserver;
             updateModifierKeys(ev);
             buttons = getButtons(ev);
             button = getButton(ev);
-            if (noMiddleClickScroll && buttons === 4 /* Auxilary */) {
+            if (noMiddleClickScroll && buttons === 4 /* ButtonsType.Flag.Auxilary */) {
                 ev.preventDefault;
             }
             onPointerDown(ev);
@@ -387,7 +387,7 @@ var InputObserver;
         function onMouseMove(ev) {
             updateModifierKeys(ev);
             buttons = getButtons(ev);
-            button = 0 /* None */;
+            button = 0 /* ButtonsType.Flag.None */;
             onPointerMove(ev);
         }
         function onMouseUp(ev) {
@@ -406,11 +406,11 @@ var InputObserver;
             eventOffset(pointerStart, ev);
             linear_algebra_1.Vec2.copy(pointerDown, pointerStart);
             if (insideBounds(pointerStart)) {
-                dragging = 1 /* Started */;
+                dragging = 1 /* DraggingState.Started */;
             }
         }
         function onPointerUp(ev) {
-            dragging = 0 /* Stopped */;
+            dragging = 0 /* DraggingState.Stopped */;
             if (!mask(ev.clientX, ev.clientY))
                 return;
             eventOffset(pointerEnd, ev);
@@ -427,7 +427,7 @@ var InputObserver;
             var x = pointerEnd[0], y = pointerEnd[1];
             var inside = insideBounds(pointerEnd);
             move.next({ x: x, y: y, pageX: pageX, pageY: pageY, buttons: buttons, button: button, modifiers: getModifierKeys(), inside: inside });
-            if (dragging === 0 /* Stopped */)
+            if (dragging === 0 /* DraggingState.Stopped */)
                 return;
             if (noTextSelect) {
                 (_a = ev.preventDefault) === null || _a === void 0 ? void 0 : _a.call(ev);
@@ -435,13 +435,13 @@ var InputObserver;
             linear_algebra_1.Vec2.div(pointerDelta, linear_algebra_1.Vec2.sub(pointerDelta, pointerEnd, pointerStart), getClientSize(rectSize));
             if (linear_algebra_1.Vec2.magnitude(pointerDelta) < linear_algebra_1.EPSILON)
                 return;
-            var isStart = dragging === 1 /* Started */;
+            var isStart = dragging === 1 /* DraggingState.Started */;
             if (isStart && !mask(ev.clientX, ev.clientY))
                 return;
             var dx = pointerDelta[0], dy = pointerDelta[1];
             drag.next({ x: x, y: y, dx: dx, dy: dy, pageX: pageX, pageY: pageY, buttons: buttons, button: button, modifiers: getModifierKeys(), isStart: isStart });
             linear_algebra_1.Vec2.copy(pointerStart, pointerEnd);
-            dragging = 2 /* Moving */;
+            dragging = 2 /* DraggingState.Moving */;
         }
         function onMouseWheel(ev) {
             if (!mask(ev.clientX, ev.clientY))
@@ -453,7 +453,7 @@ var InputObserver;
                 ev.preventDefault();
             }
             var normalized = normalizeWheel(ev);
-            buttons = button = 4 /* Auxilary */;
+            buttons = button = 4 /* ButtonsType.Flag.Auxilary */;
             if (normalized.dx || normalized.dy || normalized.dz) {
                 wheel.next(tslib_1.__assign(tslib_1.__assign({ x: x, y: y, pageX: pageX, pageY: pageY }, normalized), { buttons: buttons, button: button, modifiers: getModifierKeys() }));
             }

package/lib/commonjs/mol-util/string-builder.js

@@ -59,7 +59,7 @@ var StringBuilder;
     var __paddingSpaces = [];
     (function () {
         var s = '';
-        for (var i = 0; i < 512 /* Count */; i++) {
+        for (var i = 0; i < 512 /* PaddingSpaces.Count */; i++) {
             __paddingSpaces[i] = s;
             s = s + ' ';
         }

package/lib/commonjs/servers/model/preprocess/converter.js

@@ -20,7 +20,7 @@ function getCategoryInstanceProvider(cat, fields) {
 function classify(name, field) {
     var type = (0, cif_1.getCifFieldType)(field);
     if (type['@type'] === 'str') {
-        return { name: name, type: 0 /* Str */, value: field.str, valueKind: field.valueKind };
+        return { name: name, type: 0 /* CifWriter.Field.Type.Str */, value: field.str, valueKind: field.valueKind };
     }
     else if (type['@type'] === 'float') {
         return cif_2.CifWriter.Field.float(name, field.float, { valueKind: field.valueKind, typedArray: Float64Array });

package/lib/commonjs/servers/model/server/query.js

@@ -318,7 +318,7 @@ function abortingObserver(p) {
 exports.abortingObserver = abortingObserver;
 function string(name, str, isSpecified) {
     if (isSpecified) {
-        return CifField.str(name, function (i, d) { return str(d, i); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Present */ : 1 /* NotPresent */; } });
+        return CifField.str(name, function (i, d) { return str(d, i); }, { valueKind: function (i, d) { return isSpecified(d) ? 0 /* Column.ValueKind.Present */ : 1 /* Column.ValueKind.NotPresent */; } });
     }
     return CifField.str(name, function (i, d) { return str(d, i); });
 }

package/lib/commonjs/servers/model/utils/fetch-retry.js

@@ -18,13 +18,14 @@ function isRetriableNetworkError(error) {
 }
 function fetchRetry(url, timeout, retryCount, onRetry) {
     return tslib_1.__awaiter(this, void 0, void 0, function () {
-        var controller, id, result;
+        var controller, id, signal, result;
         return tslib_1.__generator(this, function (_a) {
             switch (_a.label) {
                 case 0:
                     controller = new AbortController();
                     id = setTimeout(function () { return controller.abort(); }, timeout);
-                    return [4 /*yield*/, (0, retry_if_1.retryIf)(function () { return (0, node_fetch_1.default)(url, { signal: controller.signal }); }, {
+                    signal = controller.signal;
+                    return [4 /*yield*/, (0, retry_if_1.retryIf)(function () { return (0, node_fetch_1.default)(url, { signal: signal }); }, {
                             retryThenIf: function (r) { return r.status === 408 /** timeout */ || r.status === 429 /** too many requests */ || (r.status >= 500 && r.status < 600); },
                             // TODO test retryCatchIf
                             retryCatchIf: function (e) { return isRetriableNetworkError(e); },