molstar 3.8.2 → 3.9.0

package/lib/commonjs/mol-plugin-state/transforms/representation.js

@@ -657,7 +657,7 @@ var ClippingStructureRepresentation3DFromScript = objects_1.PluginStateTransform
         }, function (e) { return "".concat(clipping_1.Clipping.Groups.toNames(e.groups).length, " group(s)"); }, {
             defaultValue: [{
                     script: (0, script_1.Script)('(sel.atom.all)', 'mol-script'),
-                    groups: 0 /* None */,
+                    groups: 0 /* Clipping.Groups.Flag.None */,
                 }]
         }),
     }); }
@@ -706,7 +706,7 @@ var ClippingStructureRepresentation3DFromBundle = objects_1.PluginStateTransform
         }, function (e) { return "".concat(clipping_1.Clipping.Groups.toNames(e.groups).length, " group(s)"); }, {
             defaultValue: [{
                     bundle: structure_1.StructureElement.Bundle.Empty,
-                    groups: 0 /* None */,
+                    groups: 0 /* Clipping.Groups.Flag.None */,
                 }],
             isHidden: true
         }),

package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts

@@ -94,7 +94,7 @@ export declare class LineGraphControl extends React.PureComponent<ParamProps<PD.
         isOverPoint: boolean;
         message: string;
     };
-    onHover: (point?: Vec2 | undefined) => void;
+    onHover: (point?: Vec2) => void;
     onDrag: (point: Vec2) => void;
     onChange: (value: PD.LineGraph['defaultValue']) => void;
     toggleExpanded: (e: React.MouseEvent<HTMLButtonElement>) => void;

package/lib/commonjs/mol-plugin-ui/sequence/polymer.js

@@ -97,7 +97,7 @@ function createResidueQuery(chainGroupId, operatorName, label_seq_id) {
                 structure_1.StructureProperties.unit.operator_name(ctx.element) === operatorName);
         },
         residueTest: function (ctx) {
-            if (ctx.element.unit.kind === 0 /* Atomic */) {
+            if (ctx.element.unit.kind === 0 /* Unit.Kind.Atomic */) {
                 return structure_1.StructureProperties.residue.label_seq_id(ctx.element) === label_seq_id;
             }
             else {

package/lib/commonjs/mol-plugin-ui/sequence/sequence.js

@@ -96,7 +96,7 @@ var Sequence = /** @class */ (function (_super) {
                 _this.lastMouseOverSeqIdx = seqIdx;
                 if (_this.mouseDownLoci !== undefined) {
                     var loci = _this.getLoci(seqIdx);
-                    _this.hover(loci, 0 /* None */, 0 /* None */, tslib_1.__assign(tslib_1.__assign({}, modifiers), { shift: true }));
+                    _this.hover(loci, 0 /* ButtonsType.Flag.None */, 0 /* ButtonsType.Flag.None */, tslib_1.__assign(tslib_1.__assign({}, modifiers), { shift: true }));
                 }
                 else {
                     _this.highlightQueue.next({ seqIdx: seqIdx, buttons: buttons, button: button, modifiers: modifiers });

package/lib/commonjs/mol-plugin-ui/structure/focus.js

@@ -54,7 +54,7 @@ function getFocusEntries(structure) {
             continue;
         l.unit = ug.units[0];
         l.element = ug.elements[0];
-        var isMultiChain = structure_1.Unit.Traits.is(l.unit.traits, 1 /* MultiChain */);
+        var isMultiChain = structure_1.Unit.Traits.is(l.unit.traits, 1 /* Unit.Trait.MultiChain */);
         var entityType = structure_1.StructureProperties.entity.type(l);
         var isNonPolymer = entityType === 'non-polymer';
         var isBranched = entityType === 'branched';

package/lib/commonjs/mol-plugin-ui/viewport.d.ts

@@ -18,8 +18,8 @@ export declare class ViewportControls extends PluginUIComponent<ViewportControls
     state: ViewportControlsState;
     resetCamera: () => void;
     private toggle;
-    toggleSettingsExpanded: (e?: React.MouseEvent<HTMLButtonElement, MouseEvent> | undefined) => void;
-    toggleScreenshotExpanded: (e?: React.MouseEvent<HTMLButtonElement, MouseEvent> | undefined) => void;
+    toggleSettingsExpanded: (e?: React.MouseEvent<HTMLButtonElement>) => void;
+    toggleScreenshotExpanded: (e?: React.MouseEvent<HTMLButtonElement>) => void;
     toggleControls: () => void;
     toggleExpanded: () => void;
     setSettings: (p: {

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js

@@ -118,21 +118,21 @@ function getInterUnitBondCylinderBuilderProps(structure, theme, props) {
         style: function (edgeIndex) {
             var o = edges[edgeIndex].props.order;
             var f = mol_util_1.BitFlags.create(edges[edgeIndex].props.flag);
-            if (types_1.BondType.is(f, 2 /* MetallicCoordination */) || types_1.BondType.is(f, 4 /* HydrogenBond */)) {
+            if (types_1.BondType.is(f, 2 /* BondType.Flag.MetallicCoordination */) || types_1.BondType.is(f, 4 /* BondType.Flag.HydrogenBond */)) {
                 // show metallic coordinations and hydrogen bonds with dashed cylinders
-                return 1 /* Dashed */;
+                return 1 /* LinkStyle.Dashed */;
             }
             else if (o === 3) {
-                return mbOff ? 0 /* Solid */ :
-                    mbSymmetric ? 4 /* Triple */ :
-                        5 /* OffsetTriple */;
+                return mbOff ? 0 /* LinkStyle.Solid */ :
+                    mbSymmetric ? 4 /* LinkStyle.Triple */ :
+                        5 /* LinkStyle.OffsetTriple */;
             }
-            else if (aromaticBonds && types_1.BondType.is(f, 16 /* Aromatic */)) {
-                return 7 /* Aromatic */;
+            else if (aromaticBonds && types_1.BondType.is(f, 16 /* BondType.Flag.Aromatic */)) {
+                return 7 /* LinkStyle.Aromatic */;
             }
-            return (o !== 2 || mbOff) ? 0 /* Solid */ :
-                mbSymmetric ? 2 /* Double */ :
-                    3 /* OffsetDouble */;
+            return (o !== 2 || mbOff) ? 0 /* LinkStyle.Solid */ :
+                mbSymmetric ? 2 /* LinkStyle.Double */ :
+                    3 /* LinkStyle.OffsetDouble */;
         },
         radius: function (edgeIndex) {
             return radius(edgeIndex) * sizeAspectRatio;

package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js

@@ -70,21 +70,21 @@ function createInterUnitBondLines(ctx, structure, theme, props, lines) {
         style: function (edgeIndex) {
             var o = edges[edgeIndex].props.order;
             var f = mol_util_1.BitFlags.create(edges[edgeIndex].props.flag);
-            if (types_1.BondType.is(f, 2 /* MetallicCoordination */) || types_1.BondType.is(f, 4 /* HydrogenBond */)) {
+            if (types_1.BondType.is(f, 2 /* BondType.Flag.MetallicCoordination */) || types_1.BondType.is(f, 4 /* BondType.Flag.HydrogenBond */)) {
                 // show metallic coordinations and hydrogen bonds with dashed cylinders
-                return 1 /* Dashed */;
+                return 1 /* LinkStyle.Dashed */;
             }
             else if (o === 3) {
-                return mbOff ? 0 /* Solid */ :
-                    mbSymmetric ? 4 /* Triple */ :
-                        5 /* OffsetTriple */;
+                return mbOff ? 0 /* LinkStyle.Solid */ :
+                    mbSymmetric ? 4 /* LinkStyle.Triple */ :
+                        5 /* LinkStyle.OffsetTriple */;
             }
-            else if (aromaticBonds && types_1.BondType.is(f, 16 /* Aromatic */)) {
-                return 7 /* Aromatic */;
+            else if (aromaticBonds && types_1.BondType.is(f, 16 /* BondType.Flag.Aromatic */)) {
+                return 7 /* LinkStyle.Aromatic */;
             }
-            return (o !== 2 || mbOff) ? 0 /* Solid */ :
-                mbSymmetric ? 2 /* Double */ :
-                    3 /* OffsetDouble */;
+            return (o !== 2 || mbOff) ? 0 /* LinkStyle.Solid */ :
+                mbSymmetric ? 2 /* LinkStyle.Double */ :
+                    3 /* LinkStyle.OffsetDouble */;
         },
         radius: function (edgeIndex) {
             var b = edges[edgeIndex];

package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js

@@ -34,7 +34,7 @@ function getIntraUnitBondCylinderBuilderProps(unit, structure, theme, props) {
     var mbSymmetric = multipleBonds === 'symmetric';
     var include = types_1.BondType.fromNames(includeTypes);
     var exclude = types_1.BondType.fromNames(excludeTypes);
-    var ignoreComputedAromatic = (0, bond_1.ignoreBondType)(include, exclude, 32 /* Computed */);
+    var ignoreComputedAromatic = (0, bond_1.ignoreBondType)(include, exclude, 32 /* BondType.Flag.Computed */);
     var vRef = (0, linear_algebra_1.Vec3)(), delta = (0, linear_algebra_1.Vec3)();
     var pos = unit.conformation.invariantPosition;
     var stub;
@@ -118,35 +118,35 @@ function getIntraUnitBondCylinderBuilderProps(unit, structure, theme, props) {
         style: function (edgeIndex) {
             var o = _order[edgeIndex];
             var f = _flags[edgeIndex];
-            if (isBondType(f, 2 /* MetallicCoordination */) || isBondType(f, 4 /* HydrogenBond */)) {
+            if (isBondType(f, 2 /* BondType.Flag.MetallicCoordination */) || isBondType(f, 4 /* BondType.Flag.HydrogenBond */)) {
                 // show metallic coordinations and hydrogen bonds with dashed cylinders
-                return 1 /* Dashed */;
+                return 1 /* LinkStyle.Dashed */;
             }
             else if (o === 3) {
-                return mbOff ? 0 /* Solid */ :
-                    mbSymmetric ? 4 /* Triple */ :
-                        5 /* OffsetTriple */;
+                return mbOff ? 0 /* LinkStyle.Solid */ :
+                    mbSymmetric ? 4 /* LinkStyle.Triple */ :
+                        5 /* LinkStyle.OffsetTriple */;
             }
             else if (aromaticBonds) {
                 var aI = a[edgeIndex], bI = b[edgeIndex];
                 var aR = elementAromaticRingIndices.get(aI);
                 var bR = elementAromaticRingIndices.get(bI);
                 var arCount = (aR && bR) ? (0, array_1.arrayIntersectionSize)(aR, bR) : 0;
-                if (isBondType(f, 16 /* Aromatic */) || (arCount && !ignoreComputedAromatic)) {
+                if (isBondType(f, 16 /* BondType.Flag.Aromatic */) || (arCount && !ignoreComputedAromatic)) {
                     if (arCount === 2) {
-                        return 8 /* MirroredAromatic */;
+                        return 8 /* LinkStyle.MirroredAromatic */;
                     }
                     else if (arCount === 1 || (deloTriplets === null || deloTriplets === void 0 ? void 0 : deloTriplets.getThirdElement(aI, bI))) {
-                        return 7 /* Aromatic */;
+                        return 7 /* LinkStyle.Aromatic */;
                     }
                     else {
                         // case for bonds between two aromatic rings
                     }
                 }
             }
-            return (o !== 2 || mbOff) ? 0 /* Solid */ :
-                mbSymmetric ? 2 /* Double */ :
-                    3 /* OffsetDouble */;
+            return (o !== 2 || mbOff) ? 0 /* LinkStyle.Solid */ :
+                mbSymmetric ? 2 /* LinkStyle.Double */ :
+                    3 /* LinkStyle.OffsetDouble */;
         },
         radius: function (edgeIndex) {
             return radius(edgeIndex) * sizeAspectRatio;

package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js

@@ -40,7 +40,7 @@ function createIntraUnitBondLines(ctx, unit, structure, theme, props, lines) {
     var mbSymmetric = multipleBonds === 'symmetric';
     var include = types_1.BondType.fromNames(includeTypes);
     var exclude = types_1.BondType.fromNames(excludeTypes);
-    var ignoreComputedAromatic = (0, bond_1.ignoreBondType)(include, exclude, 32 /* Computed */);
+    var ignoreComputedAromatic = (0, bond_1.ignoreBondType)(include, exclude, 32 /* BondType.Flag.Computed */);
     var vRef = (0, linear_algebra_1.Vec3)();
     var pos = unit.conformation.invariantPosition;
     var _a = unit.rings, elementRingIndices = _a.elementRingIndices, elementAromaticRingIndices = _a.elementAromaticRingIndices;
@@ -86,35 +86,35 @@ function createIntraUnitBondLines(ctx, unit, structure, theme, props, lines) {
         style: function (edgeIndex) {
             var o = _order[edgeIndex];
             var f = _flags[edgeIndex];
-            if (isBondType(f, 2 /* MetallicCoordination */) || isBondType(f, 4 /* HydrogenBond */)) {
+            if (isBondType(f, 2 /* BondType.Flag.MetallicCoordination */) || isBondType(f, 4 /* BondType.Flag.HydrogenBond */)) {
                 // show metallic coordinations and hydrogen bonds with dashed cylinders
-                return 1 /* Dashed */;
+                return 1 /* LinkStyle.Dashed */;
             }
             else if (o === 3) {
-                return mbOff ? 0 /* Solid */ :
-                    mbSymmetric ? 4 /* Triple */ :
-                        5 /* OffsetTriple */;
+                return mbOff ? 0 /* LinkStyle.Solid */ :
+                    mbSymmetric ? 4 /* LinkStyle.Triple */ :
+                        5 /* LinkStyle.OffsetTriple */;
             }
             else if (aromaticBonds) {
                 var aI = a[edgeIndex], bI = b[edgeIndex];
                 var aR = elementAromaticRingIndices.get(aI);
                 var bR = elementAromaticRingIndices.get(bI);
                 var arCount = (aR && bR) ? (0, array_1.arrayIntersectionSize)(aR, bR) : 0;
-                if (isBondType(f, 16 /* Aromatic */) || (arCount && !ignoreComputedAromatic)) {
+                if (isBondType(f, 16 /* BondType.Flag.Aromatic */) || (arCount && !ignoreComputedAromatic)) {
                     if (arCount === 2) {
-                        return 8 /* MirroredAromatic */;
+                        return 8 /* LinkStyle.MirroredAromatic */;
                     }
                     else if (arCount === 1 || (deloTriplets === null || deloTriplets === void 0 ? void 0 : deloTriplets.getThirdElement(aI, bI))) {
-                        return 7 /* Aromatic */;
+                        return 7 /* LinkStyle.Aromatic */;
                     }
                     else {
                         // case for bonds between two aromatic rings
                     }
                 }
             }
-            return (o !== 2 || mbOff) ? 0 /* Solid */ :
-                mbSymmetric ? 2 /* Double */ :
-                    3 /* OffsetDouble */;
+            return (o !== 2 || mbOff) ? 0 /* LinkStyle.Solid */ :
+                mbSymmetric ? 2 /* LinkStyle.Double */ :
+                    3 /* LinkStyle.OffsetDouble */;
         },
         radius: function (edgeIndex) {
             location.element = elements[a[edgeIndex]];

package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js

@@ -61,47 +61,47 @@ function createCarbohydrateSymbolMesh(ctx, structure, theme, props, mesh) {
         linear_algebra_1.Mat4.setTranslation(t, center);
         builderState.currentGroup = i * 2;
         switch (shapeType) {
-            case 0 /* FilledSphere */:
+            case 0 /* SaccharideShape.FilledSphere */:
                 (0, sphere_1.addSphere)(builderState, center, radius, detail);
                 break;
-            case 1 /* FilledCube */:
+            case 1 /* SaccharideShape.FilledCube */:
                 linear_algebra_1.Mat4.scaleUniformly(t, t, side);
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, box);
                 break;
-            case 2 /* CrossedCube */:
+            case 2 /* SaccharideShape.CrossedCube */:
                 linear_algebra_1.Mat4.scaleUniformly(t, t, side);
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, perforatedBox);
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZ90X180);
                 builderState.currentGroup += 1;
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, perforatedBox);
                 break;
-            case 4 /* FilledCone */:
+            case 4 /* SaccharideShape.FilledCone */:
                 linear_algebra_1.Mat4.scaleUniformly(t, t, side * 1.2);
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, octagonalPyramid);
                 break;
-            case 5 /* DevidedCone */:
+            case 5 /* SaccharideShape.DevidedCone */:
                 linear_algebra_1.Mat4.scaleUniformly(t, t, side * 1.2);
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, perforatedOctagonalPyramid);
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZ90);
                 builderState.currentGroup += 1;
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, perforatedOctagonalPyramid);
                 break;
-            case 6 /* FlatBox */:
+            case 6 /* SaccharideShape.FlatBox */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side, side, side / 2));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, box);
                 break;
-            case 7 /* FilledStar */:
+            case 7 /* SaccharideShape.FilledStar */:
                 linear_algebra_1.Mat4.scaleUniformly(t, t, side);
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, star);
                 break;
-            case 8 /* FilledDiamond */:
+            case 8 /* SaccharideShape.FilledDiamond */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side * 1.4, side * 1.4, side * 1.4));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, octahedron);
                 break;
-            case 3 /* DividedDiamond */:
+            case 3 /* SaccharideShape.DividedDiamond */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side * 1.4, side * 1.4, side * 1.4));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, perforatedOctahedron);
@@ -109,33 +109,33 @@ function createCarbohydrateSymbolMesh(ctx, structure, theme, props, mesh) {
                 builderState.currentGroup += 1;
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, perforatedOctahedron);
                 break;
-            case 9 /* FlatDiamond */:
+            case 9 /* SaccharideShape.FlatDiamond */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side, side / 2, side / 2));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, diamondPrism);
                 break;
-            case 12 /* DiamondPrism */:
+            case 12 /* SaccharideShape.DiamondPrism */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side, side, side / 2));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, diamondPrism);
                 break;
-            case 13 /* PentagonalPrism */:
-            case 11 /* Pentagon */:
+            case 13 /* SaccharideShape.PentagonalPrism */:
+            case 11 /* SaccharideShape.Pentagon */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side, side, side / 2));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, pentagonalPrism);
                 break;
-            case 14 /* HexagonalPrism */:
+            case 14 /* SaccharideShape.HexagonalPrism */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side, side, side / 2));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, hexagonalPrism);
                 break;
-            case 15 /* HeptagonalPrism */:
+            case 15 /* SaccharideShape.HeptagonalPrism */:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZY90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side, side, side / 2));
                 mesh_builder_1.MeshBuilder.addPrimitive(builderState, t, heptagonalPrism);
                 break;
-            case 10 /* FlatHexagon */:
+            case 10 /* SaccharideShape.FlatHexagon */:
             default:
                 linear_algebra_1.Mat4.mul(t, t, linear_algebra_1.Mat4.rotZYZ90);
                 linear_algebra_1.Mat4.scale(t, t, linear_algebra_1.Vec3.set(sVec, side / 1.5, side, side / 2));

package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js

@@ -54,7 +54,7 @@ function createCarbohydrateTerminalLinkCylinderMesh(ctx, structure, theme, props
             var l = terminalLinks[edgeIndex];
             var eI = l.elementUnit.elements[l.elementIndex];
             var beI = (0, common_1.getElementIdx)(l.elementUnit.model.atomicHierarchy.atoms.type_symbol.value(eI));
-            return common_1.MetalsSet.has(beI) ? 1 /* Dashed */ : 0 /* Solid */;
+            return common_1.MetalsSet.has(beI) ? 1 /* LinkStyle.Dashed */ : 0 /* LinkStyle.Solid */;
         }
     };
     var _b = (0, link_1.createLinkCylinderMesh)(ctx, builderProps, props, mesh), m = _b.mesh, boundingSphere = _b.boundingSphere;

package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js

@@ -22,6 +22,7 @@ var color_smoothing_1 = require("../../../mol-geo/geometry/mesh/color-smoothing"
 var color_smoothing_2 = require("../../../mol-geo/geometry/texture-mesh/color-smoothing");
 var base_1 = require("../../../mol-geo/geometry/base");
 var linear_algebra_1 = require("../../../mol-math/linear-algebra");
+var debug_1 = require("../../../mol-util/debug");
 var SharedParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, gaussian_1.GaussianDensityParams), base_1.ColorSmoothingParams), { ignoreHydrogens: param_definition_1.ParamDefinition.Boolean(false), tryUseGpu: param_definition_1.ParamDefinition.Boolean(true), includeParent: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }) });
 exports.GaussianSurfaceMeshParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, units_visual_1.UnitsMeshParams), units_visual_1.UnitsTextureMeshParams), SharedParams);
 exports.StructureGaussianSurfaceMeshParams = tslib_1.__assign(tslib_1.__assign(tslib_1.__assign({}, complex_visual_1.ComplexMeshParams), complex_visual_1.ComplexTextureMeshParams), SharedParams);
@@ -217,6 +218,8 @@ function createGaussianSurfaceTextureMesh(ctx, unit, structure, theme, props, te
                 case 0:
                     if (!ctx.webgl)
                         throw new Error('webgl context required to create gaussian surface texture-mesh');
+                    if (debug_1.isTimingMode)
+                        ctx.webgl.timer.mark('createGaussianSurfaceTextureMesh');
                     _a = ctx.webgl, namedTextures = _a.namedTextures, resources = _a.resources, _b = _a.extensions, colorBufferFloat = _b.colorBufferFloat, textureFloat = _b.textureFloat, colorBufferHalfFloat = _b.colorBufferHalfFloat, textureHalfFloat = _b.textureHalfFloat;
                     if (!namedTextures[GaussianSurfaceName]) {
                         namedTextures[GaussianSurfaceName] = colorBufferHalfFloat && textureHalfFloat
@@ -232,6 +235,8 @@ function createGaussianSurfaceTextureMesh(ctx, unit, structure, theme, props, te
                     axisOrder = linear_algebra_1.Vec3.create(0, 1, 2);
                     buffer = textureMesh === null || textureMesh === void 0 ? void 0 : textureMesh.doubleBuffer.get();
                     gv = (0, isosurface_1.extractIsosurface)(ctx.webgl, densityTextureData.texture, densityTextureData.gridDim, densityTextureData.gridTexDim, densityTextureData.gridTexScale, densityTextureData.transform, isoLevel, false, true, axisOrder, buffer === null || buffer === void 0 ? void 0 : buffer.vertex, buffer === null || buffer === void 0 ? void 0 : buffer.group, buffer === null || buffer === void 0 ? void 0 : buffer.normal);
+                    if (debug_1.isTimingMode)
+                        ctx.webgl.timer.markEnd('createGaussianSurfaceTextureMesh');
                     boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), unit.boundary.sphere, densityTextureData.maxRadius);
                     surface = texture_mesh_1.TextureMesh.create(gv.vertexCount, 1, gv.vertexTexture, gv.groupTexture, gv.normalTexture, boundingSphere, textureMesh);
                     surface.meta.resolution = densityTextureData.resolution;
@@ -301,6 +306,8 @@ function createStructureGaussianSurfaceTextureMesh(ctx, structure, theme, props,
                 case 0:
                     if (!ctx.webgl)
                         throw new Error('webgl context required to create structure gaussian surface texture-mesh');
+                    if (debug_1.isTimingMode)
+                        ctx.webgl.timer.mark('createStructureGaussianSurfaceTextureMesh');
                     _a = ctx.webgl, namedTextures = _a.namedTextures, resources = _a.resources, _b = _a.extensions, colorBufferFloat = _b.colorBufferFloat, textureFloat = _b.textureFloat, colorBufferHalfFloat = _b.colorBufferHalfFloat, textureHalfFloat = _b.textureHalfFloat;
                     if (!namedTextures[GaussianSurfaceName]) {
                         namedTextures[GaussianSurfaceName] = colorBufferHalfFloat && textureHalfFloat
@@ -316,6 +323,8 @@ function createStructureGaussianSurfaceTextureMesh(ctx, structure, theme, props,
                     axisOrder = linear_algebra_1.Vec3.create(0, 1, 2);
                     buffer = textureMesh === null || textureMesh === void 0 ? void 0 : textureMesh.doubleBuffer.get();
                     gv = (0, isosurface_1.extractIsosurface)(ctx.webgl, densityTextureData.texture, densityTextureData.gridDim, densityTextureData.gridTexDim, densityTextureData.gridTexScale, densityTextureData.transform, isoLevel, false, true, axisOrder, buffer === null || buffer === void 0 ? void 0 : buffer.vertex, buffer === null || buffer === void 0 ? void 0 : buffer.group, buffer === null || buffer === void 0 ? void 0 : buffer.normal);
+                    if (debug_1.isTimingMode)
+                        ctx.webgl.timer.markEnd('createStructureGaussianSurfaceTextureMesh');
                     boundingSphere = geometry_1.Sphere3D.expand((0, geometry_1.Sphere3D)(), structure.boundary.sphere, densityTextureData.maxRadius);
                     surface = texture_mesh_1.TextureMesh.create(gv.vertexCount, 1, gv.vertexTexture, gv.groupTexture, gv.normalTexture, boundingSphere, textureMesh);
                     surface.meta.resolution = densityTextureData.resolution;

package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js

@@ -35,9 +35,9 @@ function OrientationEllipsoidMeshVisual(materialId) {
 }
 exports.OrientationEllipsoidMeshVisual = OrientationEllipsoidMeshVisual;
 function isUnitApplicable(unit) {
-    if (structure_1.Unit.Traits.is(unit.traits, 1 /* MultiChain */))
+    if (structure_1.Unit.Traits.is(unit.traits, 1 /* Unit.Trait.MultiChain */))
         return false;
-    if (structure_1.Unit.Traits.is(unit.traits, 2 /* Partitioned */))
+    if (structure_1.Unit.Traits.is(unit.traits, 2 /* Unit.Trait.Partitioned */))
         return false;
     if (structure_1.Unit.isCoarse(unit))
         return true;
@@ -46,9 +46,9 @@ function isUnitApplicable(unit) {
     unit.model.atomicHierarchy.derived.residue.moleculeType;
     var rI = unit.residueIndex[unit.elements[0]];
     var mt = unit.model.atomicHierarchy.derived.residue.moleculeType[rI];
-    if (mt === 3 /* Ion */)
+    if (mt === 3 /* MoleculeType.Ion */)
         return false;
-    if (mt === 2 /* Water */)
+    if (mt === 2 /* MoleculeType.Water */)
         return false;
     return true;
 }

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js

@@ -45,7 +45,7 @@ function createPolymerDirectionWedgeMesh(ctx, unit, structure, theme, props, mes
         var v = polymerTraceIt.move();
         builderState.currentGroup = i;
         var isNucleicType = (0, types_1.isNucleic)(v.moleculeType);
-        var isSheet = types_1.SecondaryStructureType.is(v.secStrucType, 4 /* Beta */);
+        var isSheet = types_1.SecondaryStructureType.is(v.secStrucType, 4 /* SecondaryStructureType.Flag.Beta */);
         var tension = (isNucleicType || isSheet) ? 0.5 : 0.9;
         var shift = isNucleicType ? 0.3 : 0.5;
         (0, polymer_1.interpolateCurveSegment)(state, v, tension, shift);

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js

@@ -50,8 +50,8 @@ function createPolymerTraceMesh(ctx, unit, structure, theme, props, mesh) {
         var v = polymerTraceIt.move();
         builderState.currentGroup = i;
         var isNucleicType = (0, types_1.isNucleic)(v.moleculeType);
-        var isSheet = types_1.SecondaryStructureType.is(v.secStrucType, 4 /* Beta */);
-        var isHelix = types_1.SecondaryStructureType.is(v.secStrucType, 2 /* Helix */);
+        var isSheet = types_1.SecondaryStructureType.is(v.secStrucType, 4 /* SecondaryStructureType.Flag.Beta */);
+        var isHelix = types_1.SecondaryStructureType.is(v.secStrucType, 2 /* SecondaryStructureType.Flag.Helix */);
         var tension = isHelix && !tubularHelices ? polymer_1.HelixTension : polymer_1.StandardTension;
         var shift = isNucleicType ? polymer_1.NucleicShift : polymer_1.StandardShift;
         (0, polymer_1.interpolateCurveSegment)(state, v, tension, shift);

package/lib/commonjs/mol-repr/structure/visual/util/bond.js

@@ -41,7 +41,7 @@ function makeIntraBondIgnoreTest(structure, unit, props) {
     var ignoreHydrogens = props.ignoreHydrogens, includeTypes = props.includeTypes, excludeTypes = props.excludeTypes;
     var include = types_1.BondType.fromNames(includeTypes);
     var exclude = types_1.BondType.fromNames(excludeTypes);
-    var allBondTypes = types_1.BondType.isAll(include) && 0 /* None */ === exclude;
+    var allBondTypes = types_1.BondType.isAll(include) && 0 /* BondType.Flag.None */ === exclude;
     var child = structure.child;
     var childUnit = child === null || child === void 0 ? void 0 : child.unitMap.get(unit.id);
     if (child && !childUnit)
@@ -61,7 +61,7 @@ function makeInterBondIgnoreTest(structure, props) {
     var ignoreHydrogens = props.ignoreHydrogens, includeTypes = props.includeTypes, excludeTypes = props.excludeTypes;
     var include = types_1.BondType.fromNames(includeTypes);
     var exclude = types_1.BondType.fromNames(excludeTypes);
-    var allBondTypes = types_1.BondType.isAll(include) && 0 /* None */ === exclude;
+    var allBondTypes = types_1.BondType.isAll(include) && 0 /* BondType.Flag.None */ === exclude;
     var child = structure.child;
     if (allBondTypes && !ignoreHydrogens && !child)
         return;

package/lib/commonjs/mol-repr/structure/visual/util/common.js

@@ -128,9 +128,9 @@ function ensureReasonableResolution(box, props, maxCells) {
 exports.ensureReasonableResolution = ensureReasonableResolution;
 function getConformation(unit) {
     switch (unit.kind) {
-        case 0 /* Atomic */: return unit.model.atomicConformation;
-        case 1 /* Spheres */: return unit.model.coarseConformation.spheres;
-        case 2 /* Gaussians */: return unit.model.coarseConformation.gaussians;
+        case 0 /* Unit.Kind.Atomic */: return unit.model.atomicConformation;
+        case 1 /* Unit.Kind.Spheres */: return unit.model.coarseConformation.spheres;
+        case 2 /* Unit.Kind.Gaussians */: return unit.model.coarseConformation.gaussians;
     }
 }
 exports.getConformation = getConformation;