molstar 3.4.0 → 3.6.1

package/lib/commonjs/mol-gl/shader/image.frag.js

@@ -2,8 +2,8 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.image_frag = void 0;
 /**
- * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
-exports.image_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include read_from_texture\n#include common_frag_params\n#include common_clip\n\nuniform vec2 uImageTexDim;\nuniform sampler2D tImageTex;\nuniform sampler2D tGroupTex;\n\nuniform vec2 uMarkerTexDim;\nuniform sampler2D tMarker;\n\nvarying vec2 vUv;\nvarying float vInstance;\n\n#if defined(dInterpolation_catmulrom) || defined(dInterpolation_mitchell) || defined(dInterpolation_bspline)\n    #define dInterpolation_cubic\n#endif\n\n#if defined(dInterpolation_cubic)\n    #if defined(dInterpolation_catmulrom) || defined(dInterpolation_mitchell)\n        #if defined(dInterpolation_catmulrom)\n            const float B = 0.0;\n            const float C = 0.5;\n        #elif defined(dInterpolation_mitchell)\n            const float B = 0.333;\n            const float C = 0.333;\n        #endif\n\n        float cubicFilter(float x){\n            float f = x;\n            if (f < 0.0) {\n                f = -f;\n            }\n            if (f < 1.0) {\n                return ((12.0 - 9.0 * B - 6.0 * C) * (f * f * f) +\n                    (-18.0 + 12.0 * B + 6.0 * C) * (f * f) +\n                    (6.0 - 2.0 * B)) / 6.0;\n            }else if (f >= 1.0 && f < 2.0){\n                return ((-B - 6.0 * C) * ( f * f * f)\n                    + (6.0 * B + 30.0 * C) * (f * f) +\n                    (-(12.0 * B) - 48.0 * C) * f +\n                    8.0 * B + 24.0 * C) / 6.0;\n            }else{\n                return 0.0;\n            }\n        }\n    #elif defined(dInterpolation_bspline)\n        float cubicFilter(float x) {\n            float f = x;\n            if (f < 0.0) {\n                f = -f;\n            }\n            if (f >= 0.0 && f <= 1.0){\n                return (2.0 / 3.0) + (0.5) * (f * f * f) - (f * f);\n            } else if (f > 1.0 && f <= 2.0) {\n                return 1.0 / 6.0 * pow((2.0 - f), 3.0);\n            }\n            return 1.0;\n        }\n    #endif\n\n    vec4 biCubic(sampler2D tex, vec2 texCoord) {\n        vec2 texelSize = 1.0 / uImageTexDim;\n        texCoord -= texelSize / 2.0;\n        vec4 nSum = vec4(0.0);\n        float nDenom = 0.0;\n        vec2 cell = fract(texCoord * uImageTexDim);\n        for (float m = -1.0; m <= 2.0; ++m) {\n            for (float n = -1.0; n <= 2.0; ++n) {\n                vec4 vecData = texture2D(tex, texCoord + texelSize * vec2(m, n));\n                float c = cubicFilter(m - cell.x) * cubicFilter(-n + cell.y);\n                nSum += vecData * c;\n                nDenom += c;\n            }\n        }\n        return nSum / nDenom;\n    }\n#endif\n\nvoid main() {\n    #include clip_pixel\n\n    #if defined(dInterpolation_cubic)\n        vec4 imageData = biCubic(tImageTex, vUv);\n    #else\n        vec4 imageData = texture2D(tImageTex, vUv);\n    #endif\n    imageData.a = clamp(imageData.a, 0.0, 1.0);\n    if (imageData.a > 0.9) imageData.a = 1.0;\n\n    float fragmentDepth = gl_FragCoord.z;\n    bool interior = false;\n\n    #if defined(dRenderVariant_pick)\n        if (imageData.a < 0.3)\n            discard;\n        if (uPickType == 1) {\n            gl_FragColor = vec4(packIntToRGB(float(uObjectId)), 1.0);\n        } else if (uPickType == 2) {\n            gl_FragColor = vec4(packIntToRGB(vInstance), 1.0);\n        } else {\n            gl_FragColor = vec4(texture2D(tGroupTex, vUv).rgb, 1.0);\n        }\n    #elif defined(dRenderVariant_depth)\n        if (imageData.a < 0.05)\n            discard;\n        gl_FragColor = packDepthToRGBA(gl_FragCoord.z);\n    #elif defined(dRenderVariant_marking)\n        float marker = uMarker;\n        if (uMarker == -1.0) {\n            float group = unpackRGBToInt(texture2D(tGroupTex, vUv).rgb);\n            marker = readFromTexture(tMarker, vInstance * float(uGroupCount) + group, uMarkerTexDim).a;\n            marker = floor(marker * 255.0 + 0.5); // rounding required to work on some cards on win\n        }\n        if (uMarkingType == 1) {\n            if (marker > 0.0 || imageData.a < 0.05)\n                discard;\n            gl_FragColor = packDepthToRGBA(gl_FragCoord.z);\n        } else {\n            if (marker == 0.0 || imageData.a < 0.05)\n                discard;\n            float depthTest = 1.0;\n            if (uMarkingDepthTest) {\n                depthTest = (fragmentDepth >= getDepth(gl_FragCoord.xy / uDrawingBufferSize)) ? 1.0 : 0.0;\n            }\n            bool isHighlight = intMod(marker, 2.0) > 0.1;\n            gl_FragColor = vec4(0.0, depthTest, isHighlight ? 1.0 : 0.0, 1.0);\n        }\n    #elif defined(dRenderVariant_color)\n        if (imageData.a < 0.05)\n            discard;\n        gl_FragColor = imageData;\n        gl_FragColor.a *= uAlpha;\n\n        float marker = uMarker;\n        if (uMarker == -1.0) {\n            float group = unpackRGBToInt(texture2D(tGroupTex, vUv).rgb);\n            marker = readFromTexture(tMarker, vInstance * float(uGroupCount) + group, uMarkerTexDim).a;\n            marker = floor(marker * 255.0 + 0.5); // rounding required to work on some cards on win\n        }\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+exports.image_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include read_from_texture\n#include common_frag_params\n#include common_clip\n\nuniform vec2 uImageTexDim;\nuniform sampler2D tImageTex;\nuniform sampler2D tGroupTex;\n\nuniform vec2 uMarkerTexDim;\nuniform sampler2D tMarker;\n\nvarying vec2 vUv;\nvarying float vInstance;\n\n#if defined(dInterpolation_catmulrom) || defined(dInterpolation_mitchell) || defined(dInterpolation_bspline)\n    #define dInterpolation_cubic\n#endif\n\n#if defined(dInterpolation_cubic)\n    #if defined(dInterpolation_catmulrom) || defined(dInterpolation_mitchell)\n        #if defined(dInterpolation_catmulrom)\n            const float B = 0.0;\n            const float C = 0.5;\n        #elif defined(dInterpolation_mitchell)\n            const float B = 0.333;\n            const float C = 0.333;\n        #endif\n\n        float cubicFilter(float x){\n            float f = x;\n            if (f < 0.0) {\n                f = -f;\n            }\n            if (f < 1.0) {\n                return ((12.0 - 9.0 * B - 6.0 * C) * (f * f * f) +\n                    (-18.0 + 12.0 * B + 6.0 * C) * (f * f) +\n                    (6.0 - 2.0 * B)) / 6.0;\n            }else if (f >= 1.0 && f < 2.0){\n                return ((-B - 6.0 * C) * ( f * f * f)\n                    + (6.0 * B + 30.0 * C) * (f * f) +\n                    (-(12.0 * B) - 48.0 * C) * f +\n                    8.0 * B + 24.0 * C) / 6.0;\n            }else{\n                return 0.0;\n            }\n        }\n    #elif defined(dInterpolation_bspline)\n        float cubicFilter(float x) {\n            float f = x;\n            if (f < 0.0) {\n                f = -f;\n            }\n            if (f >= 0.0 && f <= 1.0){\n                return (2.0 / 3.0) + (0.5) * (f * f * f) - (f * f);\n            } else if (f > 1.0 && f <= 2.0) {\n                return 1.0 / 6.0 * pow((2.0 - f), 3.0);\n            }\n            return 1.0;\n        }\n    #endif\n\n    vec4 biCubic(sampler2D tex, vec2 texCoord) {\n        vec2 texelSize = 1.0 / uImageTexDim;\n        texCoord -= texelSize / 2.0;\n        vec4 nSum = vec4(0.0);\n        float nDenom = 0.0;\n        vec2 cell = fract(texCoord * uImageTexDim);\n        for (float m = -1.0; m <= 2.0; ++m) {\n            for (float n = -1.0; n <= 2.0; ++n) {\n                vec4 vecData = texture2D(tex, texCoord + texelSize * vec2(m, n));\n                float c = cubicFilter(m - cell.x) * cubicFilter(-n + cell.y);\n                nSum += vecData * c;\n                nDenom += c;\n            }\n        }\n        return nSum / nDenom;\n    }\n#endif\n\nvoid main() {\n    #include clip_pixel\n\n    #if defined(dInterpolation_cubic)\n        vec4 imageData = biCubic(tImageTex, vUv);\n    #else\n        vec4 imageData = texture2D(tImageTex, vUv);\n    #endif\n    imageData.a = clamp(imageData.a, 0.0, 1.0);\n    if (imageData.a > 0.9) imageData.a = 1.0;\n\n    float fragmentDepth = gl_FragCoord.z;\n\n    #if defined(dRenderVariant_pick)\n        if (imageData.a < 0.3)\n            discard;\n        if (uPickType == 1) {\n            gl_FragColor = vec4(packIntToRGB(float(uObjectId)), 1.0);\n        } else if (uPickType == 2) {\n            gl_FragColor = vec4(packIntToRGB(vInstance), 1.0);\n        } else {\n            gl_FragColor = vec4(texture2D(tGroupTex, vUv).rgb, 1.0);\n        }\n    #elif defined(dRenderVariant_depth)\n        if (imageData.a < 0.05)\n            discard;\n        gl_FragColor = packDepthToRGBA(gl_FragCoord.z);\n    #elif defined(dRenderVariant_marking)\n        float marker = uMarker;\n        if (uMarker == -1.0) {\n            float group = unpackRGBToInt(texture2D(tGroupTex, vUv).rgb);\n            marker = readFromTexture(tMarker, vInstance * float(uGroupCount) + group, uMarkerTexDim).a;\n            marker = floor(marker * 255.0 + 0.5); // rounding required to work on some cards on win\n        }\n        if (uMarkingType == 1) {\n            if (marker > 0.0 || imageData.a < 0.05)\n                discard;\n            gl_FragColor = packDepthToRGBA(gl_FragCoord.z);\n        } else {\n            if (marker == 0.0 || imageData.a < 0.05)\n                discard;\n            float depthTest = 1.0;\n            if (uMarkingDepthTest) {\n                depthTest = (fragmentDepth >= getDepth(gl_FragCoord.xy / uDrawingBufferSize)) ? 1.0 : 0.0;\n            }\n            bool isHighlight = intMod(marker, 2.0) > 0.1;\n            gl_FragColor = vec4(0.0, depthTest, isHighlight ? 1.0 : 0.0, 1.0);\n        }\n    #elif defined(dRenderVariant_color)\n        if (imageData.a < 0.05)\n            discard;\n        gl_FragColor = imageData;\n        gl_FragColor.a *= uAlpha;\n\n        float marker = uMarker;\n        if (uMarker == -1.0) {\n            float group = unpackRGBToInt(texture2D(tGroupTex, vUv).rgb);\n            marker = readFromTexture(tMarker, vInstance * float(uGroupCount) + group, uMarkerTexDim).a;\n            marker = floor(marker * 255.0 + 0.5); // rounding required to work on some cards on win\n        }\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/shader/lines.frag.d.ts

@@ -1,6 +1,6 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
-export declare const lines_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nvoid main(){\n    #include clip_pixel\n\n    bool interior = false;\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+export declare const lines_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/shader/lines.frag.js

@@ -1,9 +1,9 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.lines_frag = void 0;
-exports.lines_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nvoid main(){\n    #include clip_pixel\n\n    bool interior = false;\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+exports.lines_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/shader/points.frag.d.ts

@@ -1,6 +1,6 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
-export declare const points_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nconst vec2 center = vec2(0.5);\nconst float radius = 0.5;\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    bool interior = false;\n    #include assign_material_color\n\n    #if defined(dPointStyle_circle)\n        float dist = distance(gl_PointCoord, center);\n        if (dist > radius) discard;\n    #elif defined(dPointStyle_fuzzy)\n        float dist = distance(gl_PointCoord, center);\n        float fuzzyAlpha = 1.0 - smoothstep(0.0, radius, dist);\n        if (fuzzyAlpha < 0.0001) discard;\n    #endif\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #if defined(dPointStyle_fuzzy)\n            gl_FragColor.a *= fuzzyAlpha;\n        #endif\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+export declare const points_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nconst vec2 center = vec2(0.5);\nconst float radius = 0.5;\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    #if defined(dPointStyle_circle)\n        float dist = distance(gl_PointCoord, center);\n        if (dist > radius) discard;\n    #elif defined(dPointStyle_fuzzy)\n        float dist = distance(gl_PointCoord, center);\n        float fuzzyAlpha = 1.0 - smoothstep(0.0, radius, dist);\n        if (fuzzyAlpha < 0.0001) discard;\n    #endif\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #if defined(dPointStyle_fuzzy)\n            gl_FragColor.a *= fuzzyAlpha;\n        #endif\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/shader/points.frag.js

@@ -1,9 +1,9 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.points_frag = void 0;
-exports.points_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nconst vec2 center = vec2(0.5);\nconst float radius = 0.5;\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    bool interior = false;\n    #include assign_material_color\n\n    #if defined(dPointStyle_circle)\n        float dist = distance(gl_PointCoord, center);\n        if (dist > radius) discard;\n    #elif defined(dPointStyle_fuzzy)\n        float dist = distance(gl_PointCoord, center);\n        float fuzzyAlpha = 1.0 - smoothstep(0.0, radius, dist);\n        if (fuzzyAlpha < 0.0001) discard;\n    #endif\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #if defined(dPointStyle_fuzzy)\n            gl_FragColor.a *= fuzzyAlpha;\n        #endif\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+exports.points_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nconst vec2 center = vec2(0.5);\nconst float radius = 0.5;\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    #if defined(dPointStyle_circle)\n        float dist = distance(gl_PointCoord, center);\n        if (dist > radius) discard;\n    #elif defined(dPointStyle_fuzzy)\n        float dist = distance(gl_PointCoord, center);\n        float fuzzyAlpha = 1.0 - smoothstep(0.0, radius, dist);\n        if (fuzzyAlpha < 0.0001) discard;\n    #endif\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        gl_FragColor = material;\n\n        #if defined(dPointStyle_fuzzy)\n            gl_FragColor.a *= fuzzyAlpha;\n        #endif\n\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/shader/text.frag.d.ts

@@ -1,6 +1,6 @@
 /**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
-export declare const text_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nuniform sampler2D tFont;\n\nuniform vec3 uBorderColor;\nuniform float uBorderWidth;\nuniform vec3 uBackgroundColor;\nuniform float uBackgroundOpacity;\n\nvarying vec2 vTexCoord;\n\nconst float smoothness = 32.0;\nconst float gamma = 2.2;\n\nvoid main2(){\n    gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0);\n}\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    bool interior = false;\n    #include assign_material_color\n\n    if (vTexCoord.x > 1.0) {\n        gl_FragColor = vec4(uBackgroundColor, uBackgroundOpacity * material.a);\n    } else {\n        // retrieve signed distance\n        float sdf = texture2D(tFont, vTexCoord).a + uBorderWidth;\n\n        // perform adaptive anti-aliasing of the edges\n        float w = clamp(smoothness * (abs(dFdx(vTexCoord.x)) + abs(dFdy(vTexCoord.y))), 0.0, 0.5);\n        float a = smoothstep(0.5 - w, 0.5 + w, sdf);\n\n        // gamma correction for linear attenuation\n        a = pow(a, 1.0 / gamma);\n\n        if (a < 0.5) discard;\n        material.a *= a;\n\n        // add border\n        float t = 0.5 + uBorderWidth;\n        if (uBorderWidth > 0.0 && sdf < t) {\n            material.xyz = mix(uBorderColor, material.xyz, smoothstep(t - w, t, sdf));\n        }\n\n        gl_FragColor = material;\n    }\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+export declare const text_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nuniform sampler2D tFont;\n\nuniform vec3 uBorderColor;\nuniform float uBorderWidth;\nuniform vec3 uBackgroundColor;\nuniform float uBackgroundOpacity;\n\nvarying vec2 vTexCoord;\n\nconst float smoothness = 32.0;\nconst float gamma = 2.2;\n\nvoid main2(){\n    gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0);\n}\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    if (vTexCoord.x > 1.0) {\n        gl_FragColor = vec4(uBackgroundColor, uBackgroundOpacity * material.a);\n    } else {\n        // retrieve signed distance\n        float sdf = texture2D(tFont, vTexCoord).a + uBorderWidth;\n\n        // perform adaptive anti-aliasing of the edges\n        float w = clamp(smoothness * (abs(dFdx(vTexCoord.x)) + abs(dFdy(vTexCoord.y))), 0.0, 0.5);\n        float a = smoothstep(0.5 - w, 0.5 + w, sdf);\n\n        // gamma correction for linear attenuation\n        a = pow(a, 1.0 / gamma);\n\n        if (a < 0.5) discard;\n        material.a *= a;\n\n        // add border\n        float t = 0.5 + uBorderWidth;\n        if (uBorderWidth > 0.0 && sdf < t) {\n            material.xyz = mix(uBorderColor, material.xyz, smoothstep(t - w, t, sdf));\n        }\n\n        gl_FragColor = material;\n    }\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/shader/text.frag.js

@@ -1,9 +1,9 @@
 "use strict";
 /**
- * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.text_frag = void 0;
-exports.text_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nuniform sampler2D tFont;\n\nuniform vec3 uBorderColor;\nuniform float uBorderWidth;\nuniform vec3 uBackgroundColor;\nuniform float uBackgroundOpacity;\n\nvarying vec2 vTexCoord;\n\nconst float smoothness = 32.0;\nconst float gamma = 2.2;\n\nvoid main2(){\n    gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0);\n}\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    bool interior = false;\n    #include assign_material_color\n\n    if (vTexCoord.x > 1.0) {\n        gl_FragColor = vec4(uBackgroundColor, uBackgroundOpacity * material.a);\n    } else {\n        // retrieve signed distance\n        float sdf = texture2D(tFont, vTexCoord).a + uBorderWidth;\n\n        // perform adaptive anti-aliasing of the edges\n        float w = clamp(smoothness * (abs(dFdx(vTexCoord.x)) + abs(dFdy(vTexCoord.y))), 0.0, 0.5);\n        float a = smoothstep(0.5 - w, 0.5 + w, sdf);\n\n        // gamma correction for linear attenuation\n        a = pow(a, 1.0 / gamma);\n\n        if (a < 0.5) discard;\n        material.a *= a;\n\n        // add border\n        float t = 0.5 + uBorderWidth;\n        if (uBorderWidth > 0.0 && sdf < t) {\n            material.xyz = mix(uBorderColor, material.xyz, smoothstep(t - w, t, sdf));\n        }\n\n        gl_FragColor = material;\n    }\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
+exports.text_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nuniform sampler2D tFont;\n\nuniform vec3 uBorderColor;\nuniform float uBorderWidth;\nuniform vec3 uBackgroundColor;\nuniform float uBackgroundOpacity;\n\nvarying vec2 vTexCoord;\n\nconst float smoothness = 32.0;\nconst float gamma = 2.2;\n\nvoid main2(){\n    gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0);\n}\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    #include assign_material_color\n\n    if (vTexCoord.x > 1.0) {\n        gl_FragColor = vec4(uBackgroundColor, uBackgroundOpacity * material.a);\n    } else {\n        // retrieve signed distance\n        float sdf = texture2D(tFont, vTexCoord).a + uBorderWidth;\n\n        // perform adaptive anti-aliasing of the edges\n        float w = clamp(smoothness * (abs(dFdx(vTexCoord.x)) + abs(dFdy(vTexCoord.y))), 0.0, 0.5);\n        float a = smoothstep(0.5 - w, 0.5 + w, sdf);\n\n        // gamma correction for linear attenuation\n        a = pow(a, 1.0 / gamma);\n\n        if (a < 0.5) discard;\n        material.a *= a;\n\n        // add border\n        float t = 0.5 + uBorderWidth;\n        if (uBorderWidth > 0.0 && sdf < t) {\n            material.xyz = mix(uBorderColor, material.xyz, smoothstep(t - w, t, sdf));\n        }\n\n        gl_FragColor = material;\n    }\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";

package/lib/commonjs/mol-gl/webgl/buffer.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -41,7 +41,7 @@ export interface Buffer {
     destroy: () => void;
 }
 export declare type AttributeItemSize = 1 | 2 | 3 | 4 | 16;
-export declare type AttributeKind = 'float32' | 'int32';
+export declare type AttributeKind = 'float32';
 export declare function getAttribType(gl: GLRenderingContext, kind: AttributeKind, itemSize: AttributeItemSize): number;
 export declare type AttributeDefs = {
     [k: string]: {

package/lib/commonjs/mol-gl/webgl/buffer.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -9,6 +9,7 @@ exports.createElementsBuffer = exports.createAttributeBuffers = exports.createAt
 var tslib_1 = require("tslib");
 var id_factory_1 = require("../../mol-util/id-factory");
 var type_helpers_1 = require("../../mol-util/type-helpers");
+var compat_1 = require("./compat");
 var getNextBufferId = (0, id_factory_1.idFactory)();
 function getUsageHint(gl, usageHint) {
     switch (usageHint) {
@@ -27,6 +28,7 @@ function getDataType(gl, dataType) {
         case 'uint32': return gl.UNSIGNED_INT;
         case 'int32': return gl.INT;
         case 'float32': return gl.FLOAT;
+        default: (0, type_helpers_1.assertUnreachable)(dataType);
     }
 }
 exports.getDataType = getDataType;
@@ -58,7 +60,13 @@ function getBufferType(gl, bufferType) {
     switch (bufferType) {
         case 'attribute': return gl.ARRAY_BUFFER;
         case 'elements': return gl.ELEMENT_ARRAY_BUFFER;
-        case 'uniform': return gl.UNIFORM_BUFFER;
+        case 'uniform':
+            if ((0, compat_1.isWebGL2)(gl)) {
+                return gl.UNIFORM_BUFFER;
+            }
+            else {
+                throw new Error('WebGL2 is required for uniform buffers');
+            }
     }
 }
 exports.getBufferType = getBufferType;
@@ -114,14 +122,6 @@ function createBuffer(gl, array, usageHint, bufferType) {
 }
 function getAttribType(gl, kind, itemSize) {
     switch (kind) {
-        case 'int32':
-            switch (itemSize) {
-                case 1: return gl.INT;
-                case 2: return gl.INT_VEC2;
-                case 3: return gl.INT_VEC3;
-                case 4: return gl.INT_VEC4;
-            }
-            break;
         case 'float32':
             switch (itemSize) {
                 case 1: return gl.FLOAT;
@@ -130,9 +130,9 @@ function getAttribType(gl, kind, itemSize) {
                 case 4: return gl.FLOAT_VEC4;
                 case 16: return gl.FLOAT_MAT4;
             }
-            break;
+        default:
+            (0, type_helpers_1.assertUnreachable)(kind);
     }
-    throw new Error("unknown attribute type for kind '".concat(kind, "' and itemSize '").concat(itemSize, "'"));
 }
 exports.getAttribType = getAttribType;
 function createAttributeBuffer(gl, state, extensions, array, itemSize, divisor, usageHint) {

package/lib/commonjs/mol-gl/webgl/context.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-gl/webgl/context.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -233,7 +233,7 @@ function createContext(gl, props) {
         gl: gl,
         isWebGL2: (0, compat_1.isWebGL2)(gl),
         get pixelRatio() {
-            var dpr = (typeof window !== 'undefined') ? window.devicePixelRatio : 1;
+            var dpr = (typeof window !== 'undefined') ? (window.devicePixelRatio || 1) : 1;
             return dpr * (props.pixelScale || 1);
         },
         extensions: extensions,

package/lib/commonjs/mol-gl/webgl/program.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/mol-gl/webgl/program.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -11,6 +11,7 @@ var uniform_1 = require("./uniform");
 var buffer_1 = require("./buffer");
 var id_factory_1 = require("../../mol-util/id-factory");
 var debug_1 = require("../../mol-util/debug");
+var compat_1 = require("./compat");
 var getNextProgramId = (0, id_factory_1.idFactory)();
 function getLocations(gl, program, schema) {
     var locations = {};
@@ -54,7 +55,7 @@ function checkActiveAttributes(gl, program, schema) {
             }
             var attribType = (0, buffer_1.getAttribType)(gl, spec.kind, spec.itemSize);
             if (attribType !== type) {
-                throw new Error("unexpected attribute type for ".concat(name_1));
+                throw new Error("unexpected attribute type '".concat(attribType, "' for ").concat(name_1, ", expected '").concat(type, "'"));
             }
         }
     }
@@ -87,8 +88,13 @@ function checkActiveUniforms(gl, program, schema) {
                     }
                 }
                 else if (spec.kind === 'volume-float32' || spec.kind === 'volume-uint8') {
-                    if (type !== gl.SAMPLER_3D) {
-                        throw new Error("unexpected sampler type for '".concat(name_2, "'"));
+                    if ((0, compat_1.isWebGL2)(gl)) {
+                        if (type !== gl.SAMPLER_3D) {
+                            throw new Error("unexpected sampler type for '".concat(name_2, "'"));
+                        }
+                    }
+                    else {
+                        throw new Error("WebGL2 is required to use SAMPLER_3D");
                     }
                 }
                 else {

package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts

@@ -1,7 +1,7 @@
 /**
- * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.357, IHM 1.17, MA 1.3.6.
  *
  * @author molstar/ciftools package
  */
@@ -50,7 +50,7 @@ export declare const BIRD_Schema: {
         /**
          * Defines the structural classification of the entity.
          */
-        type: Schema.Aliased<"Unknown" | "Amino acid" | "Aminoglycoside" | "Anthracycline" | "Anthraquinone" | "Ansamycin" | "Chalkophore" | "Chromophore" | "Glycopeptide" | "Cyclic depsipeptide" | "Cyclic lipopeptide" | "Cyclic peptide" | "Heterocyclic" | "Imino sugar" | "Keto acid" | "Lipoglycopeptide" | "Lipopeptide" | "Macrolide" | "Non-polymer" | "Nucleoside" | "Oligopeptide" | "Oligosaccharide" | "Peptaibol" | "Peptide-like" | "Polycyclic" | "Polypeptide" | "Polysaccharide" | "Quinolone" | "Thiolactone" | "Thiopeptide" | "Siderophore" | "Chalkophore, Polypeptide">;
+        type: Schema.Aliased<"unknown" | "non-polymer" | "peptide-like" | "macrolide" | "amino acid" | "aminoglycoside" | "anthracycline" | "anthraquinone" | "ansamycin" | "chalkophore" | "chromophore" | "glycopeptide" | "cyclic depsipeptide" | "cyclic lipopeptide" | "cyclic peptide" | "heterocyclic" | "imino sugar" | "keto acid" | "lipoglycopeptide" | "lipopeptide" | "nucleoside" | "oligopeptide" | "oligosaccharide" | "peptaibol" | "polycyclic" | "polypeptide" | "polysaccharide" | "quinolone" | "thiolactone" | "thiopeptide" | "siderophore" | "chalkophore, polypeptide">;
         /**
          * Evidence for the assignment of _pdbx_reference_molecule.type
          */
@@ -58,7 +58,7 @@ export declare const BIRD_Schema: {
         /**
          * Broadly defines the function of the entity.
          */
-        class: Schema.Aliased<"Antagonist" | "Antibiotic" | "Anticancer" | "Anticoagulant" | "Antifungal" | "Antigen" | "Antiinflammatory" | "Antimicrobial" | "Antineoplastic" | "Antiparasitic" | "Antiretroviral" | "Anthelmintic" | "Antithrombotic" | "Antitumor" | "Antiviral" | "CASPASE inhibitor" | "Chaperone binding" | "Enzyme inhibitor" | "Drug delivery" | "Glycan component" | "Growth factor" | "Immunosuppressant" | "Inducer" | "Inhibitor" | "Lantibiotic" | "Metabolism" | "Metal transport" | "Nutrient" | "Oxidation-reduction" | "Protein binding" | "Receptor" | "Substrate analog" | "Synthetic opioid" | "Thrombin inhibitor" | "Transition state mimetic" | "Transport activator" | "Trypsin inhibitor" | "Toxin" | "Unknown" | "Water retention" | "Anticoagulant, Antithrombotic" | "Antibiotic, Antimicrobial" | "Antibiotic, Anthelmintic" | "Antibiotic, Antineoplastic" | "Antimicrobial, Antiretroviral" | "Antimicrobial, Antitumor" | "Antimicrobial, Antiparasitic, Antibiotic" | "Thrombin inhibitor, Trypsin inhibitor">;
+        class: Schema.Aliased<"unknown" | "antagonist" | "antibiotic" | "anticancer" | "anticoagulant" | "antifungal" | "antigen" | "antiinflammatory" | "antimicrobial" | "antineoplastic" | "antiparasitic" | "antiretroviral" | "anthelmintic" | "antithrombotic" | "antitumor" | "antiviral" | "caspase inhibitor" | "chaperone binding" | "enzyme inhibitor" | "drug delivery" | "glycan component" | "growth factor" | "immunosuppressant" | "inducer" | "inhibitor" | "lantibiotic" | "metabolism" | "metal transport" | "nutrient" | "oxidation-reduction" | "protein binding" | "receptor" | "substrate analog" | "synthetic opioid" | "thrombin inhibitor" | "transition state mimetic" | "transport activator" | "trypsin inhibitor" | "toxin" | "water retention" | "anticoagulant, antithrombotic" | "antibiotic, antimicrobial" | "antibiotic, anthelmintic" | "antibiotic, antineoplastic" | "antimicrobial, antiretroviral" | "antimicrobial, antitumor" | "antimicrobial, antiparasitic, antibiotic" | "thrombin inhibitor, trypsin inhibitor">;
         /**
          * Evidence for the assignment of _pdbx_reference_molecule.class
          */
@@ -91,7 +91,7 @@ export declare const BIRD_Schema: {
         /**
          * Defines the current PDB release status for this molecule definition.
          */
-        release_status: Schema.Aliased<"WAIT" | "REL" | "HOLD" | "OBS">;
+        release_status: Schema.Aliased<"wait" | "rel" | "hold" | "obs">;
         /**
          * Assigns the identifier for the reference molecule which have been replaced
          * by this reference molecule.
@@ -392,11 +392,11 @@ export declare const BIRD_Schema: {
         /**
          * A flag to indicate that this monomer is observed in the instance example.
          */
-        observed: Schema.Aliased<"N" | "Y">;
+        observed: Schema.Aliased<"y" | "n">;
         /**
          * A flag to indicate that sequence heterogeneity at this monomer position.
          */
-        hetero: Schema.Aliased<"N" | "Y">;
+        hetero: Schema.Aliased<"y" | "n">;
     };
     /**
      * Additional features associated with the reference entity.
@@ -479,7 +479,7 @@ export declare const BIRD_Schema: {
         /**
          * An identifier for the wwPDB site creating or modifying the molecule.
          */
-        processing_site: Schema.Aliased<"RCSB" | "PDBE" | "BMRB" | "PDBJ" | "PDBC">;
+        processing_site: Schema.Aliased<"RCSB" | "PDBE" | "PDBJ" | "BMRB" | "PDBC">;
         /**
          * The action associated with this audit record.
          */

package/lib/commonjs/mol-io/reader/cif/schema/bird.js

@@ -1,8 +1,8 @@
 "use strict";
 /**
- * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.357, IHM 1.17, MA 1.3.6.
  *
  * @author molstar/ciftools package
  */
@@ -12,6 +12,7 @@ var db_1 = require("../../../../mol-data/db");
 var Schema = db_1.Column.Schema;
 var str = Schema.str;
 var float = Schema.float;
+var lstr = Schema.lstr;
 var Aliased = Schema.Aliased;
 var int = Schema.int;
 exports.BIRD_Schema = {
@@ -57,7 +58,7 @@ exports.BIRD_Schema = {
         /**
          * Defines the structural classification of the entity.
          */
-        type: Aliased(str),
+        type: Aliased(lstr),
         /**
          * Evidence for the assignment of _pdbx_reference_molecule.type
          */
@@ -65,7 +66,7 @@ exports.BIRD_Schema = {
         /**
          * Broadly defines the function of the entity.
          */
-        class: Aliased(str),
+        class: Aliased(lstr),
         /**
          * Evidence for the assignment of _pdbx_reference_molecule.class
          */
@@ -77,7 +78,7 @@ exports.BIRD_Schema = {
         /**
          * Defines how this entity is represented in PDB data files.
          */
-        represent_as: Aliased(str),
+        represent_as: Aliased(lstr),
         /**
          * For entities represented as single molecules, the identifier
          * corresponding to the chemical definition for the molecule.
@@ -98,7 +99,7 @@ exports.BIRD_Schema = {
         /**
          * Defines the current PDB release status for this molecule definition.
          */
-        release_status: Aliased(str),
+        release_status: Aliased(lstr),
         /**
          * Assigns the identifier for the reference molecule which have been replaced
          * by this reference molecule.
@@ -128,7 +129,7 @@ exports.BIRD_Schema = {
         /**
          * Defines the polymer characteristic of the entity.
          */
-        type: Aliased(str),
+        type: Aliased(lstr),
         /**
          * Additional details about this entity.
          */
@@ -248,7 +249,7 @@ exports.BIRD_Schema = {
         /**
          * The bond order target for the chemical linkage.
          */
-        value_order: Aliased(str),
+        value_order: Aliased(lstr),
         /**
          * The entity component identifier for the first of two entities containing the linkage.
          */
@@ -334,7 +335,7 @@ exports.BIRD_Schema = {
         /**
          * The bond order target for the non-standard linkage.
          */
-        value_order: Aliased(str),
+        value_order: Aliased(lstr),
     },
     /**
      * Data items in the PDBX_REFERENCE_ENTITY_POLY category record details about
@@ -399,11 +400,11 @@ exports.BIRD_Schema = {
         /**
          * A flag to indicate that this monomer is observed in the instance example.
          */
-        observed: Aliased(str),
+        observed: Aliased(lstr),
         /**
          * A flag to indicate that sequence heterogeneity at this monomer position.
          */
-        hetero: Aliased(str),
+        hetero: Aliased(lstr),
     },
     /**
      * Additional features associated with the reference entity.

package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts

@@ -8,5 +8,5 @@ export declare const ccd_chemCompAtom_schema: {
     comp_id: import("../../../../mol-data/db/column").Column.Schema.Str;
     atom_id: import("../../../../mol-data/db/column").Column.Schema.Str;
     charge: import("../../../../mol-data/db/column").Column.Schema.Int;
-    pdbx_stereo_config: import("../../../../mol-data/db/column").Column.Schema.Aliased<"N" | "R" | "S">;
+    pdbx_stereo_config: import("../../../../mol-data/db/column").Column.Schema.Aliased<"s" | "r" | "n">;
 };

package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts

@@ -1,7 +1,7 @@
 /**
- * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.357, IHM 1.17, MA 1.3.6.
  *
  * @author molstar/ciftools package
  */
@@ -93,7 +93,7 @@ export declare const CCD_Schema: {
          * linking monomers, monomers with some type of N-terminal (or 5')
          * cap and monomers with some type of C-terminal (or 3') cap.
          */
-        type: Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking">;
+        type: Schema.Aliased<"other" | "d-peptide linking" | "l-peptide linking" | "d-peptide nh3 amino terminus" | "l-peptide nh3 amino terminus" | "d-peptide cooh carboxy terminus" | "l-peptide cooh carboxy terminus" | "dna linking" | "rna linking" | "l-rna linking" | "l-dna linking" | "dna oh 5 prime terminus" | "rna oh 5 prime terminus" | "dna oh 3 prime terminus" | "rna oh 3 prime terminus" | "d-saccharide, beta linking" | "d-saccharide, alpha linking" | "l-saccharide, beta linking" | "l-saccharide, alpha linking" | "l-saccharide" | "d-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "l-gamma-peptide, c-delta linking" | "d-gamma-peptide, c-delta linking" | "l-beta-peptide, c-gamma linking" | "d-beta-peptide, c-gamma linking">;
         /**
          * Synonym list for the component.
          */
@@ -144,11 +144,11 @@ export declare const CCD_Schema: {
         /**
          * This data item identifies if ideal coordinates are missing in this definition.
          */
-        pdbx_ideal_coordinates_missing_flag: Schema.Aliased<"N" | "Y">;
+        pdbx_ideal_coordinates_missing_flag: Schema.Aliased<"y" | "n">;
         /**
          * This data item identifies if model coordinates are missing in this definition.
          */
-        pdbx_model_coordinates_missing_flag: Schema.Aliased<"N" | "Y">;
+        pdbx_model_coordinates_missing_flag: Schema.Aliased<"y" | "n">;
         /**
          * Date component was added to database.
          */
@@ -165,7 +165,7 @@ export declare const CCD_Schema: {
          * This data item identifies the deposition site that processed
          * this chemical component defintion.
          */
-        pdbx_processing_site: Schema.Aliased<"RCSB" | "EBI" | "PDBE" | "PDBJ" | "PDBC">;
+        pdbx_processing_site: Schema.Aliased<"RCSB" | "PDBE" | "PDBJ" | "PDBC" | "EBI">;
     };
     /**
      * Data items in the CHEM_COMP_ATOM category record details about
@@ -269,15 +269,15 @@ export declare const CCD_Schema: {
         /**
          * The chiral configuration of the atom that is a chiral center.
          */
-        pdbx_stereo_config: Schema.Aliased<"N" | "R" | "S">;
+        pdbx_stereo_config: Schema.Aliased<"s" | "r" | "n">;
         /**
          * A flag indicating an aromatic atom.
          */
-        pdbx_aromatic_flag: Schema.Aliased<"N" | "Y">;
+        pdbx_aromatic_flag: Schema.Aliased<"y" | "n">;
         /**
          * A flag indicating a leaving atom.
          */
-        pdbx_leaving_atom_flag: Schema.Aliased<"N" | "Y">;
+        pdbx_leaving_atom_flag: Schema.Aliased<"y" | "n">;
     };
     /**
      * Data items in the CHEM_COMP_BOND category record details about
@@ -318,11 +318,11 @@ export declare const CCD_Schema: {
         /**
          * Stereochemical configuration across a double bond.
          */
-        pdbx_stereo_config: Schema.Aliased<"N" | "E" | "Z">;
+        pdbx_stereo_config: Schema.Aliased<"z" | "n" | "e">;
         /**
          * A flag indicating an aromatic bond.
          */
-        pdbx_aromatic_flag: Schema.Aliased<"N" | "Y">;
+        pdbx_aromatic_flag: Schema.Aliased<"y" | "n">;
     };
     /**
      * Data items in the CHEM_COMP_DESCRIPTOR category provide
@@ -342,7 +342,7 @@ export declare const CCD_Schema: {
         /**
          * This data item contains the descriptor type.
          */
-        type: Schema.Aliased<"SMILES_CANNONICAL" | "SMILES_CANONICAL" | "SMILES" | "InChI" | "InChI_MAIN" | "InChI_MAIN_FORMULA" | "InChI_MAIN_CONNECT" | "InChI_MAIN_HATOM" | "InChI_CHARGE" | "InChI_STEREO" | "InChI_ISOTOPE" | "InChI_FIXEDH" | "InChI_RECONNECT" | "InChIKey">;
+        type: Schema.Aliased<"smiles_cannonical" | "smiles_canonical" | "smiles" | "inchi" | "inchi_main" | "inchi_main_formula" | "inchi_main_connect" | "inchi_main_hatom" | "inchi_charge" | "inchi_stereo" | "inchi_isotope" | "inchi_fixedh" | "inchi_reconnect" | "inchikey">;
         /**
          * This data item contains the name of the program
          * or library used to compute the descriptor.