molstar 3.4.0 → 3.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -197
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -106
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +12 -14
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/viewer/app.js +1 -1
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +106 -106
- package/lib/cli/chem-comp-dict/util.d.ts +20 -20
- package/lib/cli/cif2bcif/converter.js +1 -1
- package/lib/cli/cif2bcif/index.js +4 -4
- package/lib/cli/cifschema/util/cif-dic.d.ts +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +7 -5
- package/lib/cli/cifschema/util/generate.d.ts +1 -1
- package/lib/cli/cifschema/util/generate.js +12 -3
- package/lib/cli/cifschema/util/schema.d.ts +3 -3
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +2 -2
- package/lib/commonjs/apps/viewer/app.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +20 -20
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
- package/lib/commonjs/cli/cif2bcif/index.js +4 -4
- package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +7 -5
- package/lib/commonjs/cli/cifschema/util/generate.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +12 -3
- package/lib/commonjs/cli/cifschema/util/schema.d.ts +3 -3
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +2 -2
- package/lib/commonjs/examples/basic-wrapper/index.js +2 -2
- package/lib/commonjs/examples/lighting/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
- package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +1 -3
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +18 -19
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-data/db/column.d.ts +10 -3
- package/lib/commonjs/mol-data/db/column.js +39 -17
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +6 -4
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/image.frag.js +2 -2
- package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/lines.frag.js +2 -2
- package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/points.frag.js +2 -2
- package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/text.frag.js +2 -2
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +2 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +12 -12
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +2 -2
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +10 -4
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +8 -8
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +12 -11
- package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +12 -12
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +13 -12
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +30 -26
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +44 -39
- package/lib/commonjs/mol-io/reader/cif/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema.js +22 -2
- package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
- package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
- package/lib/commonjs/mol-math/geometry/common.js +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +2 -2
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +7 -7
- package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +2 -2
- package/lib/commonjs/mol-math/geometry/gaussian-density.js +1 -1
- package/lib/commonjs/mol-math/geometry/molecular-surface.d.ts +2 -1
- package/lib/commonjs/mol-math/geometry/molecular-surface.js +2 -2
- package/lib/commonjs/mol-math/geometry/primitives/box3d.js +2 -1
- package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +12 -6
- package/lib/commonjs/mol-model/structure/model/model.js +14 -6
- package/lib/commonjs/mol-model/structure/model/properties/common.js +1 -1
- package/lib/commonjs/mol-model/structure/model/types.d.ts +19 -17
- package/lib/commonjs/mol-model/structure/model/types.js +30 -31
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +2 -4
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -3
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +3 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +3 -3
- package/lib/commonjs/mol-model-formats/structure/common/component.js +46 -46
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.js +72 -7
- package/lib/commonjs/mol-model-formats/structure/pdb/secondary-structure.js +11 -11
- package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.js +7 -2
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +4 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/commonjs/mol-plugin-ui/react18.d.ts +11 -0
- package/lib/commonjs/mol-plugin-ui/react18.js +38 -0
- package/lib/commonjs/mol-plugin-ui/state/common.js +6 -7
- package/lib/commonjs/mol-plugin-ui/structure/focus.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +2 -2
- package/lib/commonjs/mol-plugin-ui/task.d.ts +2 -21
- package/lib/commonjs/mol-plugin-ui/task.js +39 -43
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/params.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +5 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -9
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +3 -3
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +4 -4
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +1 -3
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +2 -27
- package/lib/commonjs/mol-repr/util.d.ts +2 -1
- package/lib/commonjs/mol-repr/util.js +2 -2
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -0
- package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -0
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/examples/alpha-orbitals/index.html +61 -61
- package/lib/examples/alpha-orbitals/index.js +1 -1
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/basic-wrapper/index.js +1 -1
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/lighting/index.js +1 -1
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/examples/proteopedia-wrapper/index.js +1 -1
- package/lib/extensions/anvil/behavior.d.ts +1 -0
- package/lib/extensions/anvil/representation.d.ts +4 -0
- package/lib/extensions/cellpack/representation.d.ts +1 -0
- package/lib/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
- package/lib/extensions/dnatco/confal-pyramids/color.js +224 -132
- package/lib/extensions/dnatco/confal-pyramids/property.js +1 -3
- package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/extensions/dnatco/confal-pyramids/util.js +19 -20
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
- package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/mol-canvas3d/canvas3d.d.ts +2 -0
- package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -0
- package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/mol-data/db/column.d.ts +10 -3
- package/lib/mol-data/db/column.js +39 -18
- package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
- package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
- package/lib/mol-geo/geometry/mesh/color-smoothing.js +5 -3
- package/lib/mol-geo/geometry/mesh/mesh.d.ts +2 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/mol-geo/geometry/spheres/spheres.d.ts +2 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +6 -4
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/mol-gl/shader/image.frag.d.ts +2 -2
- package/lib/mol-gl/shader/image.frag.js +2 -2
- package/lib/mol-gl/shader/lines.frag.d.ts +2 -2
- package/lib/mol-gl/shader/lines.frag.js +2 -2
- package/lib/mol-gl/shader/points.frag.d.ts +2 -2
- package/lib/mol-gl/shader/points.frag.js +2 -2
- package/lib/mol-gl/shader/text.frag.d.ts +2 -2
- package/lib/mol-gl/shader/text.frag.js +2 -2
- package/lib/mol-gl/webgl/buffer.d.ts +2 -2
- package/lib/mol-gl/webgl/buffer.js +12 -12
- package/lib/mol-gl/webgl/context.d.ts +1 -1
- package/lib/mol-gl/webgl/context.js +2 -2
- package/lib/mol-gl/webgl/program.d.ts +1 -1
- package/lib/mol-gl/webgl/program.js +10 -4
- package/lib/mol-io/reader/cif/schema/bird.d.ts +8 -8
- package/lib/mol-io/reader/cif/schema/bird.js +12 -11
- package/lib/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +12 -12
- package/lib/mol-io/reader/cif/schema/ccd.js +13 -12
- package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
- package/lib/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +30 -26
- package/lib/mol-io/reader/cif/schema/mmcif.js +44 -39
- package/lib/mol-io/reader/cif/schema.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema.js +22 -2
- package/lib/mol-io/writer/mol/encoder.js +1 -1
- package/lib/mol-math/geometry/common.d.ts +2 -1
- package/lib/mol-math/geometry/common.js +1 -1
- package/lib/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
- package/lib/mol-math/geometry/gaussian-density/cpu.js +2 -2
- package/lib/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
- package/lib/mol-math/geometry/gaussian-density/gpu.js +7 -7
- package/lib/mol-math/geometry/gaussian-density.d.ts +2 -2
- package/lib/mol-math/geometry/gaussian-density.js +1 -1
- package/lib/mol-math/geometry/molecular-surface.d.ts +2 -1
- package/lib/mol-math/geometry/molecular-surface.js +2 -2
- package/lib/mol-math/geometry/primitives/box3d.js +2 -1
- package/lib/mol-math/geometry/primitives/sphere3d.js +12 -6
- package/lib/mol-model/structure/model/model.js +14 -6
- package/lib/mol-model/structure/model/properties/common.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +19 -17
- package/lib/mol-model/structure/model/types.js +30 -31
- package/lib/mol-model/structure/query/queries/generators.js +1 -1
- package/lib/mol-model/structure/structure/properties.d.ts +1 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +2 -4
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -3
- package/lib/mol-model/structure/structure/unit/rings.js +3 -0
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/entities.js +1 -1
- package/lib/mol-model-formats/structure/basic/schema.d.ts +2 -2
- package/lib/mol-model-formats/structure/common/component.d.ts +3 -3
- package/lib/mol-model-formats/structure/common/component.js +46 -46
- package/lib/mol-model-formats/structure/pdb/atom-site.d.ts +2 -2
- package/lib/mol-model-formats/structure/pdb/atom-site.js +72 -7
- package/lib/mol-model-formats/structure/pdb/secondary-structure.js +11 -11
- package/lib/mol-model-formats/structure/pdb/to-cif.js +7 -2
- package/lib/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
- package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/util.js +4 -2
- package/lib/mol-plugin/commands.d.ts +1 -0
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -0
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/structure.d.ts +6 -6
- package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/mol-plugin-state/helpers/structure-selection-query.js +1 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/mol-plugin-ui/react18.d.ts +11 -0
- package/lib/mol-plugin-ui/react18.js +34 -0
- package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/state/common.js +7 -8
- package/lib/mol-plugin-ui/structure/focus.d.ts +1 -1
- package/lib/mol-plugin-ui/structure/focus.js +2 -2
- package/lib/mol-plugin-ui/task.d.ts +2 -21
- package/lib/mol-plugin-ui/task.js +40 -46
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +3 -0
- package/lib/mol-repr/structure/params.d.ts +4 -0
- package/lib/mol-repr/structure/registry.d.ts +10 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-visual.d.ts +4 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +5 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +10 -10
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -4
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +5 -5
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/util/common.d.ts +1 -3
- package/lib/mol-repr/structure/visual/util/common.js +1 -24
- package/lib/mol-repr/util.d.ts +2 -1
- package/lib/mol-repr/util.js +2 -2
- package/lib/mol-repr/volume/isosurface.d.ts +5 -0
- package/lib/mol-repr/volume/registry.d.ts +1 -0
- package/lib/mol-script/language/builder.d.ts +1 -0
- package/package.json +162 -160
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export declare const ConfalPyramidsColorThemeParams: {
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export declare const ConfalPyramidsColorThemeParams: {
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export declare type ConfalPyramidsColorThemeParams = typeof ConfalPyramidsColorThemeParams;
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export declare function getConfalPyramidsColorThemeParams(ctx: ThemeDataContext): {
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export declare function getConfalPyramidsColorThemeParams(ctx: ThemeDataContext): {
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colors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "default"> | PD.NamedParams<PD.Normalize<{
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+
AA02_Upr: Color;
|
|
217
|
+
AA02_Lwr: Color;
|
|
218
|
+
AA03_Upr: Color;
|
|
219
|
+
AA03_Lwr: Color;
|
|
220
|
+
AA04_Upr: Color;
|
|
221
|
+
AA04_Lwr: Color;
|
|
222
|
+
AA08_Upr: Color;
|
|
223
|
+
AA08_Lwr: Color;
|
|
224
|
+
AA09_Upr: Color;
|
|
225
|
+
AA09_Lwr: Color;
|
|
226
|
+
AA01_Upr: Color;
|
|
227
|
+
AA01_Lwr: Color;
|
|
228
|
+
AA05_Upr: Color;
|
|
229
|
+
AA05_Lwr: Color;
|
|
230
|
+
AA06_Upr: Color;
|
|
231
|
+
AA06_Lwr: Color;
|
|
232
|
+
AA10_Upr: Color;
|
|
233
|
+
AA10_Lwr: Color;
|
|
234
|
+
AA11_Upr: Color;
|
|
235
|
+
AA11_Lwr: Color;
|
|
236
|
+
AA07_Upr: Color;
|
|
237
|
+
AA07_Lwr: Color;
|
|
238
|
+
AA12_Upr: Color;
|
|
239
|
+
AA12_Lwr: Color;
|
|
240
|
+
AA13_Upr: Color;
|
|
241
|
+
AA13_Lwr: Color;
|
|
242
|
+
AB01_Upr: Color;
|
|
243
|
+
AB01_Lwr: Color;
|
|
244
|
+
AB02_Upr: Color;
|
|
245
|
+
AB02_Lwr: Color;
|
|
246
|
+
AB03_Upr: Color;
|
|
247
|
+
AB03_Lwr: Color;
|
|
248
|
+
AB04_Upr: Color;
|
|
249
|
+
AB04_Lwr: Color;
|
|
250
|
+
AB05_Upr: Color;
|
|
251
|
+
AB05_Lwr: Color;
|
|
252
|
+
BA01_Upr: Color;
|
|
253
|
+
BA01_Lwr: Color;
|
|
254
|
+
BA05_Upr: Color;
|
|
255
|
+
BA05_Lwr: Color;
|
|
256
|
+
BA09_Upr: Color;
|
|
257
|
+
BA09_Lwr: Color;
|
|
258
|
+
BA08_Upr: Color;
|
|
259
|
+
BA08_Lwr: Color;
|
|
260
|
+
BA10_Upr: Color;
|
|
261
|
+
BA10_Lwr: Color;
|
|
262
|
+
BA13_Upr: Color;
|
|
263
|
+
BA13_Lwr: Color;
|
|
264
|
+
BA16_Upr: Color;
|
|
265
|
+
BA16_Lwr: Color;
|
|
266
|
+
BA17_Upr: Color;
|
|
267
|
+
BA17_Lwr: Color;
|
|
268
|
+
BB00_Upr: Color;
|
|
269
|
+
BB00_Lwr: Color;
|
|
270
|
+
BB01_Upr: Color;
|
|
271
|
+
BB01_Lwr: Color;
|
|
272
|
+
BB17_Upr: Color;
|
|
273
|
+
BB17_Lwr: Color;
|
|
274
|
+
BB02_Upr: Color;
|
|
275
|
+
BB02_Lwr: Color;
|
|
276
|
+
BB03_Upr: Color;
|
|
277
|
+
BB03_Lwr: Color;
|
|
278
|
+
BB11_Upr: Color;
|
|
279
|
+
BB11_Lwr: Color;
|
|
280
|
+
BB16_Upr: Color;
|
|
281
|
+
BB16_Lwr: Color;
|
|
282
|
+
BB04_Upr: Color;
|
|
283
|
+
BB04_Lwr: Color;
|
|
284
|
+
BB05_Upr: Color;
|
|
285
|
+
BB05_Lwr: Color;
|
|
286
|
+
BB07_Upr: Color;
|
|
287
|
+
BB07_Lwr: Color;
|
|
288
|
+
BB08_Upr: Color;
|
|
289
|
+
BB08_Lwr: Color;
|
|
290
|
+
BB10_Upr: Color;
|
|
291
|
+
BB10_Lwr: Color;
|
|
292
|
+
BB12_Upr: Color;
|
|
293
|
+
BB12_Lwr: Color;
|
|
294
|
+
BB13_Upr: Color;
|
|
295
|
+
BB13_Lwr: Color;
|
|
296
|
+
BB14_Upr: Color;
|
|
297
|
+
BB14_Lwr: Color;
|
|
298
|
+
BB15_Upr: Color;
|
|
299
|
+
BB15_Lwr: Color;
|
|
300
|
+
BB20_Upr: Color;
|
|
301
|
+
BB20_Lwr: Color;
|
|
302
|
+
IC01_Upr: Color;
|
|
303
|
+
IC01_Lwr: Color;
|
|
304
|
+
IC02_Upr: Color;
|
|
305
|
+
IC02_Lwr: Color;
|
|
306
|
+
IC03_Upr: Color;
|
|
307
|
+
IC03_Lwr: Color;
|
|
308
|
+
IC04_Upr: Color;
|
|
309
|
+
IC04_Lwr: Color;
|
|
310
|
+
IC05_Upr: Color;
|
|
311
|
+
IC05_Lwr: Color;
|
|
312
|
+
IC06_Upr: Color;
|
|
313
|
+
IC06_Lwr: Color;
|
|
314
|
+
IC07_Upr: Color;
|
|
315
|
+
IC07_Lwr: Color;
|
|
316
|
+
OP01_Upr: Color;
|
|
317
|
+
OP01_Lwr: Color;
|
|
318
|
+
OP02_Upr: Color;
|
|
319
|
+
OP02_Lwr: Color;
|
|
320
|
+
OP03_Upr: Color;
|
|
321
|
+
OP03_Lwr: Color;
|
|
322
|
+
OP04_Upr: Color;
|
|
323
|
+
OP04_Lwr: Color;
|
|
324
|
+
OP05_Upr: Color;
|
|
325
|
+
OP05_Lwr: Color;
|
|
326
|
+
OP06_Upr: Color;
|
|
327
|
+
OP06_Lwr: Color;
|
|
328
|
+
OP07_Upr: Color;
|
|
329
|
+
OP07_Lwr: Color;
|
|
330
|
+
OP08_Upr: Color;
|
|
331
|
+
OP08_Lwr: Color;
|
|
332
|
+
OP09_Upr: Color;
|
|
333
|
+
OP09_Lwr: Color;
|
|
334
|
+
OP10_Upr: Color;
|
|
335
|
+
OP10_Lwr: Color;
|
|
336
|
+
OP11_Upr: Color;
|
|
337
|
+
OP11_Lwr: Color;
|
|
338
|
+
OP12_Upr: Color;
|
|
339
|
+
OP12_Lwr: Color;
|
|
340
|
+
OP13_Upr: Color;
|
|
341
|
+
OP13_Lwr: Color;
|
|
342
|
+
OP14_Upr: Color;
|
|
343
|
+
OP14_Lwr: Color;
|
|
344
|
+
OP15_Upr: Color;
|
|
345
|
+
OP15_Lwr: Color;
|
|
346
|
+
OP16_Upr: Color;
|
|
347
|
+
OP16_Lwr: Color;
|
|
348
|
+
OP17_Upr: Color;
|
|
349
|
+
OP17_Lwr: Color;
|
|
350
|
+
OP18_Upr: Color;
|
|
351
|
+
OP18_Lwr: Color;
|
|
352
|
+
OP19_Upr: Color;
|
|
353
|
+
OP19_Lwr: Color;
|
|
354
|
+
OP20_Upr: Color;
|
|
355
|
+
OP20_Lwr: Color;
|
|
356
|
+
OP21_Upr: Color;
|
|
357
|
+
OP21_Lwr: Color;
|
|
358
|
+
OP22_Upr: Color;
|
|
359
|
+
OP22_Lwr: Color;
|
|
360
|
+
OP23_Upr: Color;
|
|
361
|
+
OP23_Lwr: Color;
|
|
362
|
+
OP24_Upr: Color;
|
|
363
|
+
OP24_Lwr: Color;
|
|
364
|
+
OP25_Upr: Color;
|
|
365
|
+
OP25_Lwr: Color;
|
|
366
|
+
OP26_Upr: Color;
|
|
367
|
+
OP26_Lwr: Color;
|
|
368
|
+
OP27_Upr: Color;
|
|
369
|
+
OP27_Lwr: Color;
|
|
370
|
+
OP28_Upr: Color;
|
|
371
|
+
OP28_Lwr: Color;
|
|
372
|
+
OP29_Upr: Color;
|
|
373
|
+
OP29_Lwr: Color;
|
|
374
|
+
OP30_Upr: Color;
|
|
375
|
+
OP30_Lwr: Color;
|
|
376
|
+
OP31_Upr: Color;
|
|
377
|
+
OP31_Lwr: Color;
|
|
378
|
+
OPS1_Upr: Color;
|
|
379
|
+
OPS1_Lwr: Color;
|
|
380
|
+
OP1S_Upr: Color;
|
|
381
|
+
OP1S_Lwr: Color;
|
|
382
|
+
AAS1_Upr: Color;
|
|
383
|
+
AAS1_Lwr: Color;
|
|
384
|
+
AB1S_Upr: Color;
|
|
385
|
+
AB1S_Lwr: Color;
|
|
386
|
+
AB2S_Upr: Color;
|
|
387
|
+
AB2S_Lwr: Color;
|
|
388
|
+
BB1S_Upr: Color;
|
|
389
|
+
BB1S_Lwr: Color;
|
|
390
|
+
BB2S_Upr: Color;
|
|
391
|
+
BB2S_Lwr: Color;
|
|
392
|
+
BBS1_Upr: Color;
|
|
393
|
+
BBS1_Lwr: Color;
|
|
394
|
+
ZZ01_Upr: Color;
|
|
395
|
+
ZZ01_Lwr: Color;
|
|
396
|
+
ZZ02_Upr: Color;
|
|
397
|
+
ZZ02_Lwr: Color;
|
|
398
|
+
ZZ1S_Upr: Color;
|
|
399
|
+
ZZ1S_Lwr: Color;
|
|
400
|
+
ZZ2S_Upr: Color;
|
|
401
|
+
ZZ2S_Lwr: Color;
|
|
402
|
+
ZZS1_Upr: Color;
|
|
403
|
+
ZZS1_Lwr: Color;
|
|
404
|
+
ZZS2_Upr: Color;
|
|
405
|
+
ZZS2_Lwr: Color;
|
|
406
|
+
}>, "custom">>;
|
|
407
|
+
};
|
|
13
408
|
export declare function ConfalPyramidsColorTheme(ctx: ThemeDataContext, props: PD.Values<ConfalPyramidsColorThemeParams>): ColorTheme<ConfalPyramidsColorThemeParams>;
|
|
14
409
|
export declare const ConfalPyramidsColorThemeProvider: ColorTheme.Provider<ConfalPyramidsColorThemeParams, 'confal-pyramids'>;
|