molstar 3.4.0 → 3.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (401) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -197
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -106
  5. package/build/viewer/molstar.js +1 -1
  6. package/build/viewer/molstar.js.LICENSE.txt +12 -14
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/viewer/app.js +1 -1
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.html +106 -106
  12. package/lib/cli/chem-comp-dict/util.d.ts +20 -20
  13. package/lib/cli/cif2bcif/converter.js +1 -1
  14. package/lib/cli/cif2bcif/index.js +4 -4
  15. package/lib/cli/cifschema/util/cif-dic.d.ts +1 -1
  16. package/lib/cli/cifschema/util/cif-dic.js +7 -5
  17. package/lib/cli/cifschema/util/generate.d.ts +1 -1
  18. package/lib/cli/cifschema/util/generate.js +12 -3
  19. package/lib/cli/cifschema/util/schema.d.ts +3 -3
  20. package/lib/cli/cifschema/util/schema.js +1 -1
  21. package/lib/commonjs/apps/docking-viewer/index.js +2 -2
  22. package/lib/commonjs/apps/viewer/app.js +2 -2
  23. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +20 -20
  24. package/lib/commonjs/cli/cif2bcif/converter.js +1 -1
  25. package/lib/commonjs/cli/cif2bcif/index.js +4 -4
  26. package/lib/commonjs/cli/cifschema/util/cif-dic.d.ts +1 -1
  27. package/lib/commonjs/cli/cifschema/util/cif-dic.js +7 -5
  28. package/lib/commonjs/cli/cifschema/util/generate.d.ts +1 -1
  29. package/lib/commonjs/cli/cifschema/util/generate.js +12 -3
  30. package/lib/commonjs/cli/cifschema/util/schema.d.ts +3 -3
  31. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  32. package/lib/commonjs/examples/alpha-orbitals/index.js +2 -2
  33. package/lib/commonjs/examples/basic-wrapper/index.js +2 -2
  34. package/lib/commonjs/examples/lighting/index.js +2 -2
  35. package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
  36. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  37. package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
  38. package/lib/commonjs/extensions/cellpack/representation.d.ts +1 -0
  39. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  40. package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +223 -131
  41. package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +1 -3
  42. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  43. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +18 -19
  44. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
  46. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
  47. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  48. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +1 -0
  49. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  50. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  51. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  52. package/lib/commonjs/mol-data/db/column.d.ts +10 -3
  53. package/lib/commonjs/mol-data/db/column.js +39 -17
  54. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
  55. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
  56. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  57. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  58. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  59. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  60. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
  61. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  62. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
  63. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
  64. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  65. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +6 -4
  66. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
  67. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  68. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
  69. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
  70. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  71. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  72. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +2 -2
  73. package/lib/commonjs/mol-gl/shader/image.frag.js +2 -2
  74. package/lib/commonjs/mol-gl/shader/lines.frag.d.ts +2 -2
  75. package/lib/commonjs/mol-gl/shader/lines.frag.js +2 -2
  76. package/lib/commonjs/mol-gl/shader/points.frag.d.ts +2 -2
  77. package/lib/commonjs/mol-gl/shader/points.frag.js +2 -2
  78. package/lib/commonjs/mol-gl/shader/text.frag.d.ts +2 -2
  79. package/lib/commonjs/mol-gl/shader/text.frag.js +2 -2
  80. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +2 -2
  81. package/lib/commonjs/mol-gl/webgl/buffer.js +12 -12
  82. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  83. package/lib/commonjs/mol-gl/webgl/context.js +2 -2
  84. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  85. package/lib/commonjs/mol-gl/webgl/program.js +10 -4
  86. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +8 -8
  87. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +12 -11
  88. package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
  89. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +12 -12
  90. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +13 -12
  91. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
  92. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  93. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +30 -26
  94. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +44 -39
  95. package/lib/commonjs/mol-io/reader/cif/schema.d.ts +1 -1
  96. package/lib/commonjs/mol-io/reader/cif/schema.js +22 -2
  97. package/lib/commonjs/mol-io/writer/mol/encoder.js +1 -1
  98. package/lib/commonjs/mol-math/geometry/common.d.ts +2 -1
  99. package/lib/commonjs/mol-math/geometry/common.js +1 -1
  100. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
  101. package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +2 -2
  102. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
  103. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +7 -7
  104. package/lib/commonjs/mol-math/geometry/gaussian-density.d.ts +2 -2
  105. package/lib/commonjs/mol-math/geometry/gaussian-density.js +1 -1
  106. package/lib/commonjs/mol-math/geometry/molecular-surface.d.ts +2 -1
  107. package/lib/commonjs/mol-math/geometry/molecular-surface.js +2 -2
  108. package/lib/commonjs/mol-math/geometry/primitives/box3d.js +2 -1
  109. package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +12 -6
  110. package/lib/commonjs/mol-model/structure/model/model.js +14 -6
  111. package/lib/commonjs/mol-model/structure/model/properties/common.js +1 -1
  112. package/lib/commonjs/mol-model/structure/model/types.d.ts +19 -17
  113. package/lib/commonjs/mol-model/structure/model/types.js +30 -31
  114. package/lib/commonjs/mol-model/structure/query/queries/generators.js +1 -1
  115. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +1 -1
  116. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +2 -4
  117. package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -3
  118. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +3 -0
  119. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +2 -0
  120. package/lib/commonjs/mol-model-formats/structure/basic/entities.js +1 -1
  121. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +2 -2
  122. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +3 -3
  123. package/lib/commonjs/mol-model-formats/structure/common/component.js +46 -46
  124. package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.d.ts +2 -2
  125. package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.js +72 -7
  126. package/lib/commonjs/mol-model-formats/structure/pdb/secondary-structure.js +11 -11
  127. package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.js +7 -2
  128. package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
  129. package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
  130. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
  131. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
  132. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +3 -0
  133. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
  134. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  135. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +4 -2
  136. package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
  137. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +3 -0
  138. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +6 -6
  139. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  140. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +1 -1
  141. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +6 -0
  142. package/lib/commonjs/mol-plugin-ui/react18.d.ts +11 -0
  143. package/lib/commonjs/mol-plugin-ui/react18.js +38 -0
  144. package/lib/commonjs/mol-plugin-ui/state/common.js +6 -7
  145. package/lib/commonjs/mol-plugin-ui/structure/focus.d.ts +1 -1
  146. package/lib/commonjs/mol-plugin-ui/structure/focus.js +2 -2
  147. package/lib/commonjs/mol-plugin-ui/task.d.ts +2 -21
  148. package/lib/commonjs/mol-plugin-ui/task.js +39 -43
  149. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +1 -0
  150. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +1 -0
  151. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +1 -0
  152. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +1 -0
  153. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +1 -0
  154. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +3 -0
  155. package/lib/commonjs/mol-repr/structure/params.d.ts +4 -0
  156. package/lib/commonjs/mol-repr/structure/registry.d.ts +10 -0
  157. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
  158. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  159. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  160. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +3 -0
  161. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  162. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  163. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  164. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +3 -0
  165. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +3 -0
  166. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +3 -0
  167. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +4 -0
  168. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  169. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  170. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  171. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  172. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  173. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +2 -0
  174. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  175. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
  176. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +5 -1
  177. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -9
  178. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  179. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
  180. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  181. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +3 -3
  182. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  183. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +4 -4
  184. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  185. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  186. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  187. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  188. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  189. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  190. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  191. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  192. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  193. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +1 -3
  194. package/lib/commonjs/mol-repr/structure/visual/util/common.js +2 -27
  195. package/lib/commonjs/mol-repr/util.d.ts +2 -1
  196. package/lib/commonjs/mol-repr/util.js +2 -2
  197. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +5 -0
  198. package/lib/commonjs/mol-repr/volume/registry.d.ts +1 -0
  199. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  200. package/lib/examples/alpha-orbitals/index.html +61 -61
  201. package/lib/examples/alpha-orbitals/index.js +1 -1
  202. package/lib/examples/basic-wrapper/index.html +137 -137
  203. package/lib/examples/basic-wrapper/index.js +1 -1
  204. package/lib/examples/lighting/index.html +88 -88
  205. package/lib/examples/lighting/index.js +1 -1
  206. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  207. package/lib/examples/proteopedia-wrapper/index.js +1 -1
  208. package/lib/extensions/anvil/behavior.d.ts +1 -0
  209. package/lib/extensions/anvil/representation.d.ts +4 -0
  210. package/lib/extensions/cellpack/representation.d.ts +1 -0
  211. package/lib/extensions/dnatco/confal-pyramids/color.d.ts +397 -2
  212. package/lib/extensions/dnatco/confal-pyramids/color.js +224 -132
  213. package/lib/extensions/dnatco/confal-pyramids/property.js +1 -3
  214. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
  215. package/lib/extensions/dnatco/confal-pyramids/util.js +19 -20
  216. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +1 -0
  217. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -0
  218. package/lib/extensions/rcsb/validation-report/representation.d.ts +5 -0
  219. package/lib/mol-canvas3d/canvas3d.d.ts +2 -0
  220. package/lib/mol-canvas3d/helper/camera-helper.d.ts +1 -0
  221. package/lib/mol-canvas3d/helper/handle-helper.d.ts +1 -0
  222. package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
  223. package/lib/mol-canvas3d/passes/image.d.ts +1 -0
  224. package/lib/mol-data/db/column.d.ts +10 -3
  225. package/lib/mol-data/db/column.js +39 -18
  226. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +4 -2
  227. package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
  228. package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
  229. package/lib/mol-geo/geometry/mesh/color-smoothing.d.ts +1 -1
  230. package/lib/mol-geo/geometry/mesh/color-smoothing.js +5 -3
  231. package/lib/mol-geo/geometry/mesh/mesh.d.ts +2 -1
  232. package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
  233. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  234. package/lib/mol-geo/geometry/spheres/spheres.d.ts +2 -1
  235. package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
  236. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +1 -1
  237. package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +6 -4
  238. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +2 -1
  239. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  240. package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +2 -2
  241. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +2 -2
  242. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  243. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  244. package/lib/mol-gl/shader/image.frag.d.ts +2 -2
  245. package/lib/mol-gl/shader/image.frag.js +2 -2
  246. package/lib/mol-gl/shader/lines.frag.d.ts +2 -2
  247. package/lib/mol-gl/shader/lines.frag.js +2 -2
  248. package/lib/mol-gl/shader/points.frag.d.ts +2 -2
  249. package/lib/mol-gl/shader/points.frag.js +2 -2
  250. package/lib/mol-gl/shader/text.frag.d.ts +2 -2
  251. package/lib/mol-gl/shader/text.frag.js +2 -2
  252. package/lib/mol-gl/webgl/buffer.d.ts +2 -2
  253. package/lib/mol-gl/webgl/buffer.js +12 -12
  254. package/lib/mol-gl/webgl/context.d.ts +1 -1
  255. package/lib/mol-gl/webgl/context.js +2 -2
  256. package/lib/mol-gl/webgl/program.d.ts +1 -1
  257. package/lib/mol-gl/webgl/program.js +10 -4
  258. package/lib/mol-io/reader/cif/schema/bird.d.ts +8 -8
  259. package/lib/mol-io/reader/cif/schema/bird.js +12 -11
  260. package/lib/mol-io/reader/cif/schema/ccd-extras.d.ts +1 -1
  261. package/lib/mol-io/reader/cif/schema/ccd.d.ts +12 -12
  262. package/lib/mol-io/reader/cif/schema/ccd.js +13 -12
  263. package/lib/mol-io/reader/cif/schema/mmcif-extras.d.ts +5 -5
  264. package/lib/mol-io/reader/cif/schema/mmcif-extras.js +2 -2
  265. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +30 -26
  266. package/lib/mol-io/reader/cif/schema/mmcif.js +44 -39
  267. package/lib/mol-io/reader/cif/schema.d.ts +1 -1
  268. package/lib/mol-io/reader/cif/schema.js +22 -2
  269. package/lib/mol-io/writer/mol/encoder.js +1 -1
  270. package/lib/mol-math/geometry/common.d.ts +2 -1
  271. package/lib/mol-math/geometry/common.js +1 -1
  272. package/lib/mol-math/geometry/gaussian-density/cpu.d.ts +1 -1
  273. package/lib/mol-math/geometry/gaussian-density/cpu.js +2 -2
  274. package/lib/mol-math/geometry/gaussian-density/gpu.d.ts +1 -1
  275. package/lib/mol-math/geometry/gaussian-density/gpu.js +7 -7
  276. package/lib/mol-math/geometry/gaussian-density.d.ts +2 -2
  277. package/lib/mol-math/geometry/gaussian-density.js +1 -1
  278. package/lib/mol-math/geometry/molecular-surface.d.ts +2 -1
  279. package/lib/mol-math/geometry/molecular-surface.js +2 -2
  280. package/lib/mol-math/geometry/primitives/box3d.js +2 -1
  281. package/lib/mol-math/geometry/primitives/sphere3d.js +12 -6
  282. package/lib/mol-model/structure/model/model.js +14 -6
  283. package/lib/mol-model/structure/model/properties/common.js +1 -1
  284. package/lib/mol-model/structure/model/types.d.ts +19 -17
  285. package/lib/mol-model/structure/model/types.js +30 -31
  286. package/lib/mol-model/structure/query/queries/generators.js +1 -1
  287. package/lib/mol-model/structure/structure/properties.d.ts +1 -1
  288. package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +2 -4
  289. package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -3
  290. package/lib/mol-model/structure/structure/unit/rings.js +3 -0
  291. package/lib/mol-model-formats/shape/ply.d.ts +2 -0
  292. package/lib/mol-model-formats/structure/basic/entities.js +1 -1
  293. package/lib/mol-model-formats/structure/basic/schema.d.ts +2 -2
  294. package/lib/mol-model-formats/structure/common/component.d.ts +3 -3
  295. package/lib/mol-model-formats/structure/common/component.js +46 -46
  296. package/lib/mol-model-formats/structure/pdb/atom-site.d.ts +2 -2
  297. package/lib/mol-model-formats/structure/pdb/atom-site.js +72 -7
  298. package/lib/mol-model-formats/structure/pdb/secondary-structure.js +11 -11
  299. package/lib/mol-model-formats/structure/pdb/to-cif.js +7 -2
  300. package/lib/mol-model-formats/structure/property/bonds/chem_comp.js +1 -1
  301. package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +1 -1
  302. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
  303. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
  304. package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
  305. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
  306. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  307. package/lib/mol-plugin/behavior/dynamic/volume-streaming/util.js +4 -2
  308. package/lib/mol-plugin/commands.d.ts +1 -0
  309. package/lib/mol-plugin/util/viewport-screenshot.d.ts +3 -0
  310. package/lib/mol-plugin/version.js +2 -2
  311. package/lib/mol-plugin-state/actions/structure.d.ts +6 -6
  312. package/lib/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  313. package/lib/mol-plugin-state/helpers/structure-selection-query.js +1 -1
  314. package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
  315. package/lib/mol-plugin-ui/react18.d.ts +11 -0
  316. package/lib/mol-plugin-ui/react18.js +34 -0
  317. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  318. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  319. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  320. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  321. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  322. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  323. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  324. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  325. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  326. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  327. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  328. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  329. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +128 -128
  330. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  331. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  332. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  333. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  334. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  335. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  336. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  337. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  338. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  339. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  340. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  341. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  342. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  343. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  344. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  345. package/lib/mol-plugin-ui/state/common.js +7 -8
  346. package/lib/mol-plugin-ui/structure/focus.d.ts +1 -1
  347. package/lib/mol-plugin-ui/structure/focus.js +2 -2
  348. package/lib/mol-plugin-ui/task.d.ts +2 -21
  349. package/lib/mol-plugin-ui/task.js +40 -46
  350. package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
  351. package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
  352. package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
  353. package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
  354. package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
  355. package/lib/mol-repr/structure/complex-visual.d.ts +3 -0
  356. package/lib/mol-repr/structure/params.d.ts +4 -0
  357. package/lib/mol-repr/structure/registry.d.ts +10 -0
  358. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  359. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
  360. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
  361. package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
  362. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
  363. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  364. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  365. package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
  366. package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
  367. package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
  368. package/lib/mol-repr/structure/units-visual.d.ts +4 -0
  369. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
  370. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
  371. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
  372. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
  373. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
  374. package/lib/mol-repr/structure/visual/element-sphere.d.ts +2 -0
  375. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
  376. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +2 -3
  377. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +5 -1
  378. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +10 -10
  379. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -1
  380. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +4 -5
  381. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  382. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -4
  383. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -1
  384. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +5 -5
  385. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
  386. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
  387. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
  388. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  389. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  390. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
  391. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
  392. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
  393. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
  394. package/lib/mol-repr/structure/visual/util/common.d.ts +1 -3
  395. package/lib/mol-repr/structure/visual/util/common.js +1 -24
  396. package/lib/mol-repr/util.d.ts +2 -1
  397. package/lib/mol-repr/util.js +2 -2
  398. package/lib/mol-repr/volume/isosurface.d.ts +5 -0
  399. package/lib/mol-repr/volume/registry.d.ts +1 -0
  400. package/lib/mol-script/language/builder.d.ts +1 -0
  401. package/package.json +162 -160
@@ -10,33 +10,31 @@ var jsx_runtime_1 = require("react/jsx-runtime");
10
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  */
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  var base_1 = require("./base");
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  var immutable_1 = require("immutable");
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- var operators_1 = require("rxjs/operators");
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  var common_1 = require("./controls/common");
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  var icons_1 = require("./controls/icons");
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- var BackgroundTaskProgress = /** @class */ (function (_super) {
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- tslib_1.__extends(BackgroundTaskProgress, _super);
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- function BackgroundTaskProgress() {
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- var _this = _super !== null && _super.apply(this, arguments) || this;
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- _this.state = { tracked: (0, immutable_1.OrderedMap)() };
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- return _this;
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- }
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- BackgroundTaskProgress.prototype.componentDidMount = function () {
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- var _this = this;
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- var _a;
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- var hideOverlay = !!((_a = this.plugin.spec.components) === null || _a === void 0 ? void 0 : _a.hideTaskOverlay);
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- this.subscribe(this.plugin.events.task.progress.pipe((0, operators_1.filter)(function (e) { return e.level === 'background' && (hideOverlay || !e.useOverlay); })), function (e) {
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- _this.setState({ tracked: _this.state.tracked.set(e.id, e) });
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+ var react_1 = require("react");
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+ function BackgroundTaskProgress() {
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+ var plugin = (0, react_1.useContext)(base_1.PluginReactContext);
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+ var _a = (0, react_1.useState)((0, immutable_1.OrderedMap)()), tracked = _a[0], setTracked = _a[1];
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+ (0, react_1.useEffect)(function () {
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+ var started = plugin.events.task.progress.subscribe(function (e) {
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+ var _a;
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+ var hideOverlay = !!((_a = plugin.spec.components) === null || _a === void 0 ? void 0 : _a.hideTaskOverlay);
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+ if (e.level === 'background' && (hideOverlay || !e.useOverlay)) {
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+ setTracked(function (tracked) { return tracked.set(e.id, e); });
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+ }
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  });
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- this.subscribe(this.plugin.events.task.finished, function (_a) {
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+ var finished = plugin.events.task.finished.subscribe(function (_a) {
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  var id = _a.id;
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- _this.setState({ tracked: _this.state.tracked.delete(id) });
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+ setTracked(function (tracked) { return tracked.delete(id); });
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  });
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- };
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- BackgroundTaskProgress.prototype.render = function () {
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- return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-background-tasks' }, { children: this.state.tracked.valueSeq().map(function (e) { return (0, jsx_runtime_1.jsx)(ProgressEntry, { event: e }, e.id); }) }));
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- };
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- return BackgroundTaskProgress;
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- }(base_1.PluginUIComponent));
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+ return function () {
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+ started.unsubscribe();
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+ finished.unsubscribe();
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+ };
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+ }, [plugin]);
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+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-background-tasks' }, { children: tracked.valueSeq().map(function (e) { return (0, jsx_runtime_1.jsx)(ProgressEntry, { event: e }, e.id); }) }));
37
+ }
40
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  exports.BackgroundTaskProgress = BackgroundTaskProgress;
41
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  var ProgressEntry = /** @class */ (function (_super) {
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@@ -70,28 +68,26 @@ function countSubtasks(progress) {
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  }
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  return sum;
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  }
73
- var OverlayTaskProgress = /** @class */ (function (_super) {
74
- tslib_1.__extends(OverlayTaskProgress, _super);
75
- function OverlayTaskProgress() {
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- var _this = _super !== null && _super.apply(this, arguments) || this;
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- _this.state = { tracked: (0, immutable_1.OrderedMap)() };
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- return _this;
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- }
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- OverlayTaskProgress.prototype.componentDidMount = function () {
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- var _this = this;
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- this.subscribe(this.plugin.events.task.progress.pipe((0, operators_1.filter)(function (e) { return !!e.useOverlay; })), function (e) {
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- _this.setState({ tracked: _this.state.tracked.set(e.id, e) });
71
+ function OverlayTaskProgress() {
72
+ var plugin = (0, react_1.useContext)(base_1.PluginReactContext);
73
+ var _a = (0, react_1.useState)((0, immutable_1.OrderedMap)()), tracked = _a[0], setTracked = _a[1];
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+ (0, react_1.useEffect)(function () {
75
+ var started = plugin.events.task.progress.subscribe(function (e) {
76
+ if (!!e.useOverlay) {
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+ setTracked(function (tracked) { return tracked.set(e.id, e); });
78
+ }
84
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  });
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- this.subscribe(this.plugin.events.task.finished, function (_a) {
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+ var finished = plugin.events.task.finished.subscribe(function (_a) {
86
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  var id = _a.id;
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- _this.setState({ tracked: _this.state.tracked.delete(id) });
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+ setTracked(function (tracked) { return tracked.delete(id); });
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  });
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- };
90
- OverlayTaskProgress.prototype.render = function () {
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- if (this.state.tracked.size === 0)
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- return null;
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- return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-overlay-tasks' }, { children: this.state.tracked.valueSeq().map(function (e) { return (0, jsx_runtime_1.jsx)(ProgressEntry, { event: e }, e.id); }) }));
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- };
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- return OverlayTaskProgress;
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- }(base_1.PluginUIComponent));
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+ return function () {
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+ started.unsubscribe();
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+ finished.unsubscribe();
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+ };
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+ }, [plugin]);
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+ if (tracked.size === 0)
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+ return null;
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+ return (0, jsx_runtime_1.jsx)("div", tslib_1.__assign({ className: 'msp-overlay-tasks' }, { children: tracked.valueSeq().map(function (e) { return (0, jsx_runtime_1.jsx)(ProgressEntry, { event: e }, e.id); }) }));
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+ }
97
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  exports.OverlayTaskProgress = OverlayTaskProgress;
@@ -58,6 +58,7 @@ export declare const AngleParams: {
58
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  flipSided: PD.BooleanParam;
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  flatShaded: PD.BooleanParam;
60
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  xrayShaded: PD.BooleanParam;
61
+ allowTransparentBackfaces: PD.BooleanParam;
61
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  lineSizeAttenuation: PD.BooleanParam;
@@ -58,6 +58,7 @@ export declare const DihedralParams: {
58
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  flipSided: PD.BooleanParam;
59
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  flatShaded: PD.BooleanParam;
60
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  xrayShaded: PD.BooleanParam;
61
+ allowTransparentBackfaces: PD.BooleanParam;
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  bumpFrequency: PD.Numeric;
62
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  bumpAmplitude: PD.Numeric;
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  lineSizeAttenuation: PD.BooleanParam;
@@ -19,6 +19,7 @@ export declare const OrientationParams: {
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  flatShaded: PD.BooleanParam;
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  ignoreLight: PD.BooleanParam;
21
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  xrayShaded: PD.BooleanParam;
22
+ allowTransparentBackfaces: PD.BooleanParam;
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -18,6 +18,7 @@ export declare const PlaneParams: {
18
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  flatShaded: PD.BooleanParam;
19
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  ignoreLight: PD.BooleanParam;
20
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  xrayShaded: PD.BooleanParam;
21
+ allowTransparentBackfaces: PD.BooleanParam;
21
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  bumpFrequency: PD.Numeric;
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  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -21,6 +21,7 @@ export declare const UnitcellParams: {
21
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  flatShaded: PD.BooleanParam;
22
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  ignoreLight: PD.BooleanParam;
23
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  xrayShaded: PD.BooleanParam;
24
+ allowTransparentBackfaces: PD.BooleanParam;
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  bumpFrequency: PD.Numeric;
25
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  bumpAmplitude: PD.Numeric;
26
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  alpha: PD.Numeric;
@@ -47,6 +47,7 @@ export declare const ComplexMeshParams: {
47
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  flatShaded: PD.BooleanParam;
48
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  ignoreLight: PD.BooleanParam;
49
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  xrayShaded: PD.BooleanParam;
50
+ allowTransparentBackfaces: PD.BooleanParam;
50
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  bumpFrequency: PD.Numeric;
51
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  bumpAmplitude: PD.Numeric;
52
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  alpha: PD.Numeric;
@@ -79,6 +80,7 @@ export declare const ComplexCylindersParams: {
79
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  doubleSided: PD.BooleanParam;
80
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  ignoreLight: PD.BooleanParam;
81
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  xrayShaded: PD.BooleanParam;
83
+ allowTransparentBackfaces: PD.BooleanParam;
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  bumpFrequency: PD.Numeric;
83
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  bumpAmplitude: PD.Numeric;
84
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  alpha: PD.Numeric;
@@ -212,6 +214,7 @@ export declare const ComplexTextureMeshParams: {
212
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  flatShaded: PD.BooleanParam;
213
215
  ignoreLight: PD.BooleanParam;
214
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  xrayShaded: PD.BooleanParam;
217
+ allowTransparentBackfaces: PD.BooleanParam;
215
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  bumpFrequency: PD.Numeric;
216
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  bumpAmplitude: PD.Numeric;
217
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  alpha: PD.Numeric;
@@ -18,6 +18,7 @@ export declare const StructureMeshParams: {
18
18
  flatShaded: PD.BooleanParam;
19
19
  ignoreLight: PD.BooleanParam;
20
20
  xrayShaded: PD.BooleanParam;
21
+ allowTransparentBackfaces: PD.BooleanParam;
21
22
  bumpFrequency: PD.Numeric;
22
23
  bumpAmplitude: PD.Numeric;
23
24
  alpha: PD.Numeric;
@@ -44,6 +45,7 @@ export declare const StructureSpheresParams: {
44
45
  doubleSided: PD.BooleanParam;
45
46
  ignoreLight: PD.BooleanParam;
46
47
  xrayShaded: PD.BooleanParam;
48
+ allowTransparentBackfaces: PD.BooleanParam;
47
49
  bumpFrequency: PD.Numeric;
48
50
  bumpAmplitude: PD.Numeric;
49
51
  alpha: PD.Numeric;
@@ -71,6 +73,7 @@ export declare const StructureCylindersParams: {
71
73
  doubleSided: PD.BooleanParam;
72
74
  ignoreLight: PD.BooleanParam;
73
75
  xrayShaded: PD.BooleanParam;
76
+ allowTransparentBackfaces: PD.BooleanParam;
74
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  bumpFrequency: PD.Numeric;
75
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  bumpAmplitude: PD.Numeric;
76
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  alpha: PD.Numeric;
@@ -207,6 +210,7 @@ export declare const StructureTextureMeshParams: {
207
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  flatShaded: PD.BooleanParam;
208
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  ignoreLight: PD.BooleanParam;
209
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  xrayShaded: PD.BooleanParam;
213
+ allowTransparentBackfaces: PD.BooleanParam;
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  bumpFrequency: PD.Numeric;
211
215
  bumpAmplitude: PD.Numeric;
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  alpha: PD.Numeric;
@@ -22,6 +22,7 @@ export declare namespace StructureRepresentationRegistry {
22
22
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
23
23
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
24
24
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
25
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
25
26
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
26
27
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
27
28
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -61,6 +62,7 @@ export declare namespace StructureRepresentationRegistry {
61
62
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
62
63
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
63
64
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
65
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
64
66
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
65
67
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
66
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  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -110,6 +112,7 @@ export declare namespace StructureRepresentationRegistry {
110
112
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
111
113
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
112
114
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
115
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
113
116
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
114
117
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
115
118
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -155,6 +158,7 @@ export declare namespace StructureRepresentationRegistry {
155
158
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
156
159
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
157
160
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
161
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
158
162
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
159
163
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
160
164
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -205,6 +209,7 @@ export declare namespace StructureRepresentationRegistry {
205
209
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
206
210
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
207
211
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
212
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
208
213
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
209
214
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
210
215
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -266,6 +271,7 @@ export declare namespace StructureRepresentationRegistry {
266
271
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
267
272
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
268
273
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
274
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
269
275
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
270
276
  }, "gaussian-surface">;
271
277
  'gaussian-volume': import("./representation").StructureRepresentationProvider<{
@@ -421,6 +427,7 @@ export declare namespace StructureRepresentationRegistry {
421
427
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
422
428
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
423
429
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
430
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
424
431
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
425
432
  }, "molecular-surface">;
426
433
  orientation: import("./representation").StructureRepresentationProvider<{
@@ -435,6 +442,7 @@ export declare namespace StructureRepresentationRegistry {
435
442
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
436
443
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
437
444
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
445
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
438
446
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
439
447
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
440
448
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -492,6 +500,7 @@ export declare namespace StructureRepresentationRegistry {
492
500
  flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
493
501
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
494
502
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
503
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
495
504
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
496
505
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
497
506
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -525,6 +534,7 @@ export declare namespace StructureRepresentationRegistry {
525
534
  doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
526
535
  ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
527
536
  xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
537
+ allowTransparentBackfaces: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
528
538
  bumpAmplitude: import("../../mol-util/param-definition").ParamDefinition.Numeric;
529
539
  alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
530
540
  quality: import("../../mol-util/param-definition").ParamDefinition.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -21,6 +21,7 @@ export declare const BackboneParams: {
21
21
  flatShaded: PD.BooleanParam;
22
22
  ignoreLight: PD.BooleanParam;
23
23
  xrayShaded: PD.BooleanParam;
24
+ allowTransparentBackfaces: PD.BooleanParam;
24
25
  bumpAmplitude: PD.Numeric;
25
26
  alpha: PD.Numeric;
26
27
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -56,6 +57,7 @@ export declare function getBackboneParams(ctx: ThemeRegistryContext, structure:
56
57
  flatShaded: PD.BooleanParam;
57
58
  ignoreLight: PD.BooleanParam;
58
59
  xrayShaded: PD.BooleanParam;
60
+ allowTransparentBackfaces: PD.BooleanParam;
59
61
  bumpAmplitude: PD.Numeric;
60
62
  alpha: PD.Numeric;
61
63
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -92,6 +94,7 @@ export declare const BackboneRepresentationProvider: StructureRepresentationProv
92
94
  flatShaded: PD.BooleanParam;
93
95
  ignoreLight: PD.BooleanParam;
94
96
  xrayShaded: PD.BooleanParam;
97
+ allowTransparentBackfaces: PD.BooleanParam;
95
98
  bumpAmplitude: PD.Numeric;
96
99
  alpha: PD.Numeric;
97
100
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -36,6 +36,7 @@ export declare const BallAndStickParams: {
36
36
  doubleSided: PD.BooleanParam;
37
37
  ignoreLight: PD.BooleanParam;
38
38
  xrayShaded: PD.BooleanParam;
39
+ allowTransparentBackfaces: PD.BooleanParam;
39
40
  bumpAmplitude: PD.Numeric;
40
41
  alpha: PD.Numeric;
41
42
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -88,6 +89,7 @@ export declare function getBallAndStickParams(ctx: ThemeRegistryContext, structu
88
89
  doubleSided: PD.BooleanParam;
89
90
  ignoreLight: PD.BooleanParam;
90
91
  xrayShaded: PD.BooleanParam;
92
+ allowTransparentBackfaces: PD.BooleanParam;
91
93
  bumpAmplitude: PD.Numeric;
92
94
  alpha: PD.Numeric;
93
95
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -141,6 +143,7 @@ export declare const BallAndStickRepresentationProvider: StructureRepresentation
141
143
  doubleSided: PD.BooleanParam;
142
144
  ignoreLight: PD.BooleanParam;
143
145
  xrayShaded: PD.BooleanParam;
146
+ allowTransparentBackfaces: PD.BooleanParam;
144
147
  bumpAmplitude: PD.Numeric;
145
148
  alpha: PD.Numeric;
146
149
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -30,6 +30,7 @@ export declare const CarbohydrateParams: {
30
30
  flatShaded: PD.BooleanParam;
31
31
  ignoreLight: PD.BooleanParam;
32
32
  xrayShaded: PD.BooleanParam;
33
+ allowTransparentBackfaces: PD.BooleanParam;
33
34
  bumpAmplitude: PD.Numeric;
34
35
  alpha: PD.Numeric;
35
36
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -75,6 +76,7 @@ export declare function getCarbohydrateParams(ctx: ThemeRegistryContext, structu
75
76
  flatShaded: PD.BooleanParam;
76
77
  ignoreLight: PD.BooleanParam;
77
78
  xrayShaded: PD.BooleanParam;
79
+ allowTransparentBackfaces: PD.BooleanParam;
78
80
  bumpAmplitude: PD.Numeric;
79
81
  alpha: PD.Numeric;
80
82
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -121,6 +123,7 @@ export declare const CarbohydrateRepresentationProvider: StructureRepresentation
121
123
  flatShaded: PD.BooleanParam;
122
124
  ignoreLight: PD.BooleanParam;
123
125
  xrayShaded: PD.BooleanParam;
126
+ allowTransparentBackfaces: PD.BooleanParam;
124
127
  bumpAmplitude: PD.Numeric;
125
128
  alpha: PD.Numeric;
126
129
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -19,6 +19,7 @@ export declare const CartoonParams: {
19
19
  flatShaded: PD.BooleanParam;
20
20
  ignoreLight: PD.BooleanParam;
21
21
  xrayShaded: PD.BooleanParam;
22
+ allowTransparentBackfaces: PD.BooleanParam;
22
23
  bumpAmplitude: PD.Numeric;
23
24
  alpha: PD.Numeric;
24
25
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -57,6 +58,7 @@ export declare function getCartoonParams(ctx: ThemeRegistryContext, structure: S
57
58
  flatShaded: PD.BooleanParam;
58
59
  ignoreLight: PD.BooleanParam;
59
60
  xrayShaded: PD.BooleanParam;
61
+ allowTransparentBackfaces: PD.BooleanParam;
60
62
  bumpAmplitude: PD.Numeric;
61
63
  alpha: PD.Numeric;
62
64
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -96,6 +98,7 @@ export declare const CartoonRepresentationProvider: StructureRepresentationProvi
96
98
  flatShaded: PD.BooleanParam;
97
99
  ignoreLight: PD.BooleanParam;
98
100
  xrayShaded: PD.BooleanParam;
101
+ allowTransparentBackfaces: PD.BooleanParam;
99
102
  bumpAmplitude: PD.Numeric;
100
103
  alpha: PD.Numeric;
101
104
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -36,6 +36,7 @@ export declare const EllipsoidParams: {
36
36
  doubleSided: PD.BooleanParam;
37
37
  ignoreLight: PD.BooleanParam;
38
38
  xrayShaded: PD.BooleanParam;
39
+ allowTransparentBackfaces: PD.BooleanParam;
39
40
  bumpAmplitude: PD.Numeric;
40
41
  alpha: PD.Numeric;
41
42
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -87,6 +88,7 @@ export declare function getEllipsoidParams(ctx: ThemeRegistryContext, structure:
87
88
  doubleSided: PD.BooleanParam;
88
89
  ignoreLight: PD.BooleanParam;
89
90
  xrayShaded: PD.BooleanParam;
91
+ allowTransparentBackfaces: PD.BooleanParam;
90
92
  bumpAmplitude: PD.Numeric;
91
93
  alpha: PD.Numeric;
92
94
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -139,6 +141,7 @@ export declare const EllipsoidRepresentationProvider: StructureRepresentationPro
139
141
  doubleSided: PD.BooleanParam;
140
142
  ignoreLight: PD.BooleanParam;
141
143
  xrayShaded: PD.BooleanParam;
144
+ allowTransparentBackfaces: PD.BooleanParam;
142
145
  bumpAmplitude: PD.Numeric;
143
146
  alpha: PD.Numeric;
144
147
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -47,6 +47,7 @@ export declare const GaussianSurfaceParams: {
47
47
  flatShaded: PD.BooleanParam;
48
48
  ignoreLight: PD.BooleanParam;
49
49
  xrayShaded: PD.BooleanParam;
50
+ allowTransparentBackfaces: PD.BooleanParam;
50
51
  bumpAmplitude: PD.Numeric;
51
52
  };
52
53
  export declare type GaussianSurfaceParams = typeof GaussianSurfaceParams;
@@ -89,6 +90,7 @@ export declare function getGaussianSurfaceParams(ctx: ThemeRegistryContext, stru
89
90
  flatShaded: PD.BooleanParam;
90
91
  ignoreLight: PD.BooleanParam;
91
92
  xrayShaded: PD.BooleanParam;
93
+ allowTransparentBackfaces: PD.BooleanParam;
92
94
  bumpAmplitude: PD.Numeric;
93
95
  };
94
96
  export declare type GaussianSurfaceRepresentation = StructureRepresentation<GaussianSurfaceParams>;
@@ -132,5 +134,6 @@ export declare const GaussianSurfaceRepresentationProvider: StructureRepresentat
132
134
  flatShaded: PD.BooleanParam;
133
135
  ignoreLight: PD.BooleanParam;
134
136
  xrayShaded: PD.BooleanParam;
137
+ allowTransparentBackfaces: PD.BooleanParam;
135
138
  bumpAmplitude: PD.Numeric;
136
139
  }, "gaussian-surface">;
@@ -46,6 +46,7 @@ export declare const MolecularSurfaceParams: {
46
46
  flatShaded: PD.BooleanParam;
47
47
  ignoreLight: PD.BooleanParam;
48
48
  xrayShaded: PD.BooleanParam;
49
+ allowTransparentBackfaces: PD.BooleanParam;
49
50
  bumpAmplitude: PD.Numeric;
50
51
  };
51
52
  export declare type MolecularSurfaceParams = typeof MolecularSurfaceParams;
@@ -87,6 +88,7 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
87
88
  flatShaded: PD.BooleanParam;
88
89
  ignoreLight: PD.BooleanParam;
89
90
  xrayShaded: PD.BooleanParam;
91
+ allowTransparentBackfaces: PD.BooleanParam;
90
92
  bumpAmplitude: PD.Numeric;
91
93
  };
92
94
  export declare type MolecularSurfaceRepresentation = StructureRepresentation<MolecularSurfaceParams>;
@@ -129,5 +131,6 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
129
131
  flatShaded: PD.BooleanParam;
130
132
  ignoreLight: PD.BooleanParam;
131
133
  xrayShaded: PD.BooleanParam;
134
+ allowTransparentBackfaces: PD.BooleanParam;
132
135
  bumpAmplitude: PD.Numeric;
133
136
  }, "molecular-surface">;
@@ -20,6 +20,7 @@ export declare const OrientationParams: {
20
20
  flatShaded: PD.BooleanParam;
21
21
  ignoreLight: PD.BooleanParam;
22
22
  xrayShaded: PD.BooleanParam;
23
+ allowTransparentBackfaces: PD.BooleanParam;
23
24
  bumpAmplitude: PD.Numeric;
24
25
  alpha: PD.Numeric;
25
26
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -52,6 +53,7 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
52
53
  flatShaded: PD.BooleanParam;
53
54
  ignoreLight: PD.BooleanParam;
54
55
  xrayShaded: PD.BooleanParam;
56
+ allowTransparentBackfaces: PD.BooleanParam;
55
57
  bumpAmplitude: PD.Numeric;
56
58
  alpha: PD.Numeric;
57
59
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -85,6 +87,7 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
85
87
  flatShaded: PD.BooleanParam;
86
88
  ignoreLight: PD.BooleanParam;
87
89
  xrayShaded: PD.BooleanParam;
90
+ allowTransparentBackfaces: PD.BooleanParam;
88
91
  bumpAmplitude: PD.Numeric;
89
92
  alpha: PD.Numeric;
90
93
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -20,6 +20,7 @@ export declare const PuttyParams: {
20
20
  flatShaded: PD.BooleanParam;
21
21
  ignoreLight: PD.BooleanParam;
22
22
  xrayShaded: PD.BooleanParam;
23
+ allowTransparentBackfaces: PD.BooleanParam;
23
24
  bumpAmplitude: PD.Numeric;
24
25
  alpha: PD.Numeric;
25
26
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -54,6 +55,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
54
55
  flatShaded: PD.BooleanParam;
55
56
  ignoreLight: PD.BooleanParam;
56
57
  xrayShaded: PD.BooleanParam;
58
+ allowTransparentBackfaces: PD.BooleanParam;
57
59
  bumpAmplitude: PD.Numeric;
58
60
  alpha: PD.Numeric;
59
61
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -89,6 +91,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
89
91
  flatShaded: PD.BooleanParam;
90
92
  ignoreLight: PD.BooleanParam;
91
93
  xrayShaded: PD.BooleanParam;
94
+ allowTransparentBackfaces: PD.BooleanParam;
92
95
  bumpAmplitude: PD.Numeric;
93
96
  alpha: PD.Numeric;
94
97
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -20,6 +20,7 @@ export declare const SpacefillParams: {
20
20
  doubleSided: PD.BooleanParam;
21
21
  ignoreLight: PD.BooleanParam;
22
22
  xrayShaded: PD.BooleanParam;
23
+ allowTransparentBackfaces: PD.BooleanParam;
23
24
  bumpAmplitude: PD.Numeric;
24
25
  alpha: PD.Numeric;
25
26
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -54,6 +55,7 @@ export declare function getSpacefillParams(ctx: ThemeRegistryContext, structure:
54
55
  doubleSided: PD.BooleanParam;
55
56
  ignoreLight: PD.BooleanParam;
56
57
  xrayShaded: PD.BooleanParam;
58
+ allowTransparentBackfaces: PD.BooleanParam;
57
59
  bumpAmplitude: PD.Numeric;
58
60
  alpha: PD.Numeric;
59
61
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -89,6 +91,7 @@ export declare const SpacefillRepresentationProvider: StructureRepresentationPro
89
91
  doubleSided: PD.BooleanParam;
90
92
  ignoreLight: PD.BooleanParam;
91
93
  xrayShaded: PD.BooleanParam;
94
+ allowTransparentBackfaces: PD.BooleanParam;
92
95
  bumpAmplitude: PD.Numeric;
93
96
  alpha: PD.Numeric;
94
97
  quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
@@ -51,6 +51,7 @@ export declare const UnitsMeshParams: {
51
51
  flatShaded: PD.BooleanParam;
52
52
  ignoreLight: PD.BooleanParam;
53
53
  xrayShaded: PD.BooleanParam;
54
+ allowTransparentBackfaces: PD.BooleanParam;
54
55
  bumpFrequency: PD.Numeric;
55
56
  bumpAmplitude: PD.Numeric;
56
57
  alpha: PD.Numeric;
@@ -82,6 +83,7 @@ export declare const UnitsSpheresParams: {
82
83
  doubleSided: PD.BooleanParam;
83
84
  ignoreLight: PD.BooleanParam;
84
85
  xrayShaded: PD.BooleanParam;
86
+ allowTransparentBackfaces: PD.BooleanParam;
85
87
  bumpFrequency: PD.Numeric;
86
88
  bumpAmplitude: PD.Numeric;
87
89
  alpha: PD.Numeric;
@@ -114,6 +116,7 @@ export declare const UnitsCylindersParams: {
114
116
  doubleSided: PD.BooleanParam;
115
117
  ignoreLight: PD.BooleanParam;
116
118
  xrayShaded: PD.BooleanParam;
119
+ allowTransparentBackfaces: PD.BooleanParam;
117
120
  bumpFrequency: PD.Numeric;
118
121
  bumpAmplitude: PD.Numeric;
119
122
  alpha: PD.Numeric;
@@ -275,6 +278,7 @@ export declare const UnitsTextureMeshParams: {
275
278
  flatShaded: PD.BooleanParam;
276
279
  ignoreLight: PD.BooleanParam;
277
280
  xrayShaded: PD.BooleanParam;
281
+ allowTransparentBackfaces: PD.BooleanParam;
278
282
  bumpFrequency: PD.Numeric;
279
283
  bumpAmplitude: PD.Numeric;
280
284
  alpha: PD.Numeric;
@@ -33,6 +33,7 @@ export declare const InterUnitBondCylinderParams: {
33
33
  doubleSided: PD.BooleanParam;
34
34
  ignoreLight: PD.BooleanParam;
35
35
  xrayShaded: PD.BooleanParam;
36
+ allowTransparentBackfaces: PD.BooleanParam;
36
37
  bumpFrequency: PD.Numeric;
37
38
  bumpAmplitude: PD.Numeric;
38
39
  alpha: PD.Numeric;
@@ -82,6 +83,7 @@ export declare function InterUnitBondCylinderVisual(materialId: number, structur
82
83
  doubleSided: PD.BooleanParam;
83
84
  ignoreLight: PD.BooleanParam;
84
85
  xrayShaded: PD.BooleanParam;
86
+ allowTransparentBackfaces: PD.BooleanParam;
85
87
  bumpFrequency: PD.Numeric;
86
88
  bumpAmplitude: PD.Numeric;
87
89
  alpha: PD.Numeric;
@@ -34,6 +34,7 @@ export declare const IntraUnitBondCylinderParams: {
34
34
  doubleSided: PD.BooleanParam;
35
35
  ignoreLight: PD.BooleanParam;
36
36
  xrayShaded: PD.BooleanParam;
37
+ allowTransparentBackfaces: PD.BooleanParam;
37
38
  bumpFrequency: PD.Numeric;
38
39
  bumpAmplitude: PD.Numeric;
39
40
  alpha: PD.Numeric;
@@ -83,6 +84,7 @@ export declare function IntraUnitBondCylinderVisual(materialId: number, structur
83
84
  doubleSided: PD.BooleanParam;
84
85
  ignoreLight: PD.BooleanParam;
85
86
  xrayShaded: PD.BooleanParam;
87
+ allowTransparentBackfaces: PD.BooleanParam;
86
88
  bumpFrequency: PD.Numeric;
87
89
  bumpAmplitude: PD.Numeric;
88
90
  alpha: PD.Numeric;
@@ -25,6 +25,7 @@ export declare const CarbohydrateLinkParams: {
25
25
  flatShaded: PD.BooleanParam;
26
26
  ignoreLight: PD.BooleanParam;
27
27
  xrayShaded: PD.BooleanParam;
28
+ allowTransparentBackfaces: PD.BooleanParam;
28
29
  bumpFrequency: PD.Numeric;
29
30
  bumpAmplitude: PD.Numeric;
30
31
  alpha: PD.Numeric;
@@ -15,6 +15,7 @@ export declare const CarbohydrateSymbolParams: {
15
15
  flatShaded: PD.BooleanParam;
16
16
  ignoreLight: PD.BooleanParam;
17
17
  xrayShaded: PD.BooleanParam;
18
+ allowTransparentBackfaces: PD.BooleanParam;
18
19
  bumpFrequency: PD.Numeric;
19
20
  bumpAmplitude: PD.Numeric;
20
21
  alpha: PD.Numeric;
@@ -25,6 +25,7 @@ export declare const CarbohydrateTerminalLinkParams: {
25
25
  flatShaded: PD.BooleanParam;
26
26
  ignoreLight: PD.BooleanParam;
27
27
  xrayShaded: PD.BooleanParam;
28
+ allowTransparentBackfaces: PD.BooleanParam;
28
29
  bumpFrequency: PD.Numeric;
29
30
  bumpAmplitude: PD.Numeric;
30
31
  alpha: PD.Numeric;