molstar 3.26.0 → 3.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (499) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +115 -115
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +2 -0
  9. package/lib/apps/docking-viewer/viewport.js +1 -0
  10. package/lib/apps/viewer/app.d.ts +3 -1
  11. package/lib/apps/viewer/app.js +4 -0
  12. package/lib/apps/viewer/embedded.html +52 -52
  13. package/lib/apps/viewer/index.html +115 -115
  14. package/lib/cli/structure-info/volume.js +1 -1
  15. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -0
  16. package/lib/commonjs/apps/docking-viewer/viewport.js +1 -0
  17. package/lib/commonjs/apps/viewer/app.d.ts +3 -1
  18. package/lib/commonjs/apps/viewer/app.js +4 -0
  19. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  20. package/lib/commonjs/examples/lighting/index.js +1 -1
  21. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  22. package/lib/commonjs/extensions/cellpack/model.js +2 -1
  23. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  24. package/lib/commonjs/extensions/meshes/choice.d.ts +26 -0
  25. package/lib/commonjs/extensions/meshes/choice.js +31 -0
  26. package/lib/commonjs/extensions/meshes/examples.d.ts +26 -0
  27. package/lib/commonjs/extensions/meshes/examples.js +337 -0
  28. package/lib/commonjs/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  29. package/lib/commonjs/extensions/meshes/mesh-cif-schema.js +34 -0
  30. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +66 -0
  31. package/lib/commonjs/extensions/meshes/mesh-extension.js +221 -0
  32. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  33. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.js +379 -0
  34. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  35. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.js +30 -0
  36. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  37. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.js +273 -0
  38. package/lib/commonjs/extensions/meshes/mesh-utils.d.ts +41 -0
  39. package/lib/commonjs/extensions/meshes/mesh-utils.js +357 -0
  40. package/lib/commonjs/extensions/meshes/metadata.d.ts +108 -0
  41. package/lib/commonjs/extensions/meshes/metadata.js +72 -0
  42. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  43. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  44. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +16 -4
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  46. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  47. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  48. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.js +156 -0
  49. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  50. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.js +96 -0
  51. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
  52. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +576 -0
  53. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
  54. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.js +200 -0
  55. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
  56. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.js +32 -0
  57. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
  58. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.js +234 -0
  59. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
  60. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +85 -0
  61. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
  62. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.js +83 -0
  63. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
  64. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +171 -0
  65. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +20 -0
  66. package/lib/commonjs/extensions/volumes-and-segmentations/index.js +130 -0
  67. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
  68. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.js +85 -0
  69. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +29 -0
  70. package/lib/commonjs/extensions/volumes-and-segmentations/ui.js +232 -0
  71. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
  72. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.js +83 -0
  73. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.d.ts +92 -0
  74. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.js +7 -0
  75. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.d.ts +23 -0
  76. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.js +78 -0
  77. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  78. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  79. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  80. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -1
  81. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +27 -13
  82. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  83. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
  84. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  85. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  86. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  87. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
  88. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
  89. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +4 -6
  90. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
  91. package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
  92. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -0
  93. package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
  94. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  95. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  96. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.d.ts +1 -1
  97. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +1 -1
  98. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +1 -1
  99. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +1 -1
  100. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +2 -2
  101. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +2 -2
  102. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  103. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  104. package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
  105. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
  106. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  107. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  108. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +1 -1
  109. package/lib/commonjs/mol-gl/shader/outlines.frag.js +1 -1
  110. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  111. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  112. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  113. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  114. package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
  115. package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
  116. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +1 -1
  117. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +15 -0
  118. package/lib/commonjs/mol-gl/webgl/state.d.ts +12 -0
  119. package/lib/commonjs/mol-gl/webgl/state.js +136 -0
  120. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.d.ts +38 -0
  121. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.js +22 -0
  122. package/lib/commonjs/mol-io/reader/cif.d.ts +3 -1
  123. package/lib/commonjs/mol-io/reader/cif.js +3 -1
  124. package/lib/commonjs/mol-model/location.d.ts +2 -1
  125. package/lib/commonjs/mol-model/loci.d.ts +11 -11
  126. package/lib/commonjs/mol-model/loci.js +13 -1
  127. package/lib/commonjs/mol-model/sequence/alignment/sequence.d.ts +4 -1
  128. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +4 -1
  129. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -0
  130. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +8 -0
  131. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +21 -5
  132. package/lib/commonjs/mol-model/structure/structure/util/superposition.d.ts +1 -0
  133. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +2 -1
  134. package/lib/commonjs/mol-model/volume/volume.d.ts +35 -2
  135. package/lib/commonjs/mol-model/volume/volume.js +77 -2
  136. package/lib/commonjs/mol-model-formats/volume/segmentation.d.ts +23 -0
  137. package/lib/commonjs/mol-model-formats/volume/segmentation.js +138 -0
  138. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  139. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
  140. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +2 -1
  141. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  142. package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
  143. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +4 -1
  144. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
  145. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
  146. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +13 -4
  147. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +6 -1
  148. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -0
  149. package/lib/commonjs/mol-plugin-state/formats/provider.d.ts +2 -2
  150. package/lib/commonjs/mol-plugin-state/formats/provider.js +11 -3
  151. package/lib/commonjs/mol-plugin-state/formats/registry.js +6 -5
  152. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +27 -0
  153. package/lib/commonjs/mol-plugin-state/formats/volume.js +65 -1
  154. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
  155. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +18 -13
  156. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -2
  157. package/lib/commonjs/mol-plugin-state/transforms/representation.js +5 -6
  158. package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +11 -1
  159. package/lib/commonjs/mol-plugin-state/transforms/volume.js +55 -2
  160. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +1 -0
  161. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +33 -13
  162. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -0
  163. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +22 -5
  164. package/lib/commonjs/mol-plugin-ui/sequence/sequence.d.ts +25 -17
  165. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +19 -1
  166. package/lib/commonjs/mol-plugin-ui/sequence.js +8 -1
  167. package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -10
  168. package/lib/commonjs/mol-plugin-ui/state/apply-action.js +2 -2
  169. package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +2 -2
  170. package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +1 -1
  171. package/lib/commonjs/mol-plugin-ui/structure/volume.d.ts +1 -1
  172. package/lib/commonjs/mol-plugin-ui/structure/volume.js +3 -2
  173. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -0
  174. package/lib/commonjs/mol-repr/structure/params.d.ts +2 -0
  175. package/lib/commonjs/mol-repr/structure/registry.d.ts +12 -0
  176. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
  177. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -0
  178. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -0
  179. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  180. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  181. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
  182. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  183. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
  184. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +6 -0
  185. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +2 -0
  186. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -0
  187. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -0
  188. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  189. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +1 -0
  190. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -0
  191. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -0
  192. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  193. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +1 -0
  194. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
  195. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +2 -1
  196. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
  197. package/lib/commonjs/mol-repr/structure/visual/element-point.js +2 -1
  198. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  199. package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +3 -1
  200. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  201. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +6 -2
  202. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  203. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -1
  204. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  205. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -1
  206. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  207. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +4 -0
  208. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  209. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +2 -0
  210. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  211. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  212. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -0
  213. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +18 -7
  214. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +4 -1
  215. package/lib/commonjs/mol-repr/structure/visual/util/common.js +10 -6
  216. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +1 -0
  217. package/lib/commonjs/mol-repr/structure/visual/util/element.js +2 -3
  218. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +2 -0
  219. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +4 -4
  220. package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -6
  221. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +4 -4
  222. package/lib/commonjs/mol-repr/volume/isosurface.js +17 -16
  223. package/lib/commonjs/mol-repr/volume/registry.d.ts +54 -1
  224. package/lib/commonjs/mol-repr/volume/registry.js +3 -1
  225. package/lib/commonjs/mol-repr/volume/representation.d.ts +11 -7
  226. package/lib/commonjs/mol-repr/volume/representation.js +142 -47
  227. package/lib/commonjs/mol-repr/volume/segment.d.ts +291 -0
  228. package/lib/commonjs/mol-repr/volume/segment.js +289 -0
  229. package/lib/commonjs/mol-repr/volume/slice.d.ts +2 -2
  230. package/lib/commonjs/mol-repr/volume/slice.js +5 -5
  231. package/lib/commonjs/mol-repr/volume/util.d.ts +12 -3
  232. package/lib/commonjs/mol-repr/volume/util.js +72 -6
  233. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  234. package/lib/commonjs/mol-theme/color/volume-segment.d.ts +41 -0
  235. package/lib/commonjs/mol-theme/color/volume-segment.js +58 -0
  236. package/lib/commonjs/mol-theme/color/volume-value.js +2 -1
  237. package/lib/commonjs/mol-theme/color.d.ts +15 -0
  238. package/lib/commonjs/mol-theme/color.js +2 -0
  239. package/lib/commonjs/mol-theme/label.d.ts +1 -1
  240. package/lib/commonjs/mol-theme/label.js +13 -1
  241. package/lib/commonjs/mol-util/param-definition.d.ts +4 -1
  242. package/lib/commonjs/mol-util/param-definition.js +5 -2
  243. package/lib/examples/alpha-orbitals/index.html +72 -72
  244. package/lib/examples/basic-wrapper/index.html +137 -137
  245. package/lib/examples/lighting/index.html +88 -88
  246. package/lib/examples/lighting/index.js +1 -1
  247. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  248. package/lib/extensions/anvil/behavior.d.ts +1 -0
  249. package/lib/extensions/cellpack/model.js +2 -1
  250. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  251. package/lib/extensions/meshes/choice.d.ts +26 -0
  252. package/lib/extensions/meshes/choice.js +28 -0
  253. package/lib/extensions/meshes/examples.d.ts +26 -0
  254. package/lib/extensions/meshes/examples.js +325 -0
  255. package/lib/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  256. package/lib/extensions/meshes/mesh-cif-schema.js +30 -0
  257. package/lib/extensions/meshes/mesh-extension.d.ts +66 -0
  258. package/lib/extensions/meshes/mesh-extension.js +218 -0
  259. package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  260. package/lib/extensions/meshes/mesh-streaming/behavior.js +375 -0
  261. package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  262. package/lib/extensions/meshes/mesh-streaming/server-info.js +26 -0
  263. package/lib/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  264. package/lib/extensions/meshes/mesh-streaming/transformers.js +270 -0
  265. package/lib/extensions/meshes/mesh-utils.d.ts +41 -0
  266. package/lib/extensions/meshes/mesh-utils.js +346 -0
  267. package/lib/extensions/meshes/metadata.d.ts +108 -0
  268. package/lib/extensions/meshes/metadata.js +69 -0
  269. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  270. package/lib/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  271. package/lib/extensions/model-archive/quality-assessment/prop.js +16 -4
  272. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  273. package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  274. package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  275. package/lib/extensions/volumes-and-segmentations/entry-meshes.js +153 -0
  276. package/lib/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  277. package/lib/extensions/volumes-and-segmentations/entry-models.js +93 -0
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+ > button {
89
+ display: inline-block;
90
+ margin-top: -3px;
91
+ // font-size: 140%;
92
+ }
93
+ }
94
+ }
95
+ }
96
+
97
+ // .msp-background-tasks .msp-task-state {
98
+ // color:
99
+ // }
@@ -1,84 +1,84 @@
1
-
2
- @use "sass:math";
3
-
4
- .msp-toast-container {
5
- position: relative;
6
- // bottom: $control-spacing;
7
- // right: $control-spacing;
8
- // margin-left: $control-spacing;
9
- z-index: 1001;
10
-
11
- .msp-toast-entry {
12
- color: $font-color;
13
- background: $control-background;
14
- position: relative;
15
- float: right;
16
- min-height: $row-height;
17
- margin-top: $control-spacing;
18
- border: 1px solid $border-color;
19
- display: table;
20
-
21
- .msp-toast-title {
22
- height: 100%;
23
- line-height: $row-height;
24
- padding: 0 $control-spacing;
25
- background: $default-background;
26
- font-weight: bold;
27
- display: table-cell;
28
-
29
- -webkit-user-select: none; /* Chrome/Safari */
30
- -moz-user-select: none; /* Firefox */
31
- -ms-user-select: none; /* IE10+ */
32
-
33
- /* Rules below not implemented in browsers yet */
34
- -o-user-select: none;
35
- user-select: none;
36
-
37
- font-weight: light;
38
-
39
- cursor: pointer;
40
- }
41
-
42
- .msp-toast-message {
43
- padding: $info-vertical-padding ($control-spacing + $row-height) $info-vertical-padding $control-spacing;
44
- display: table-cell;
45
-
46
- a {
47
- text-decoration: none;
48
- color: $msp-btn-commit-on-font-color;
49
- font-weight: bold;
50
-
51
- &:hover {
52
- text-decoration: underline;
53
- color: $msp-btn-commit-on-hover-font-color;
54
- }
55
-
56
- &:active, &:focus {
57
- color: $msp-btn-commit-on-font-color;
58
- outline-offset: 0;
59
- outline: none;
60
- }
61
- }
62
- }
63
-
64
- .msp-toast-hide {
65
- position: absolute;
66
- width: $row-height + $control-spacing;
67
- right: 0;
68
- top: 0;
69
- bottom: 0;
70
-
71
- .msp-btn-icon {
72
- background: transparent;
73
- position: absolute;
74
- top: 1px;
75
- right: 0;
76
- left: 0;
77
- bottom: 0;
78
- width: 100%;
79
- text-align: right;
80
- padding-right: math.div($control-spacing, 2);
81
- }
82
- }
83
- }
1
+
2
+ @use "sass:math";
3
+
4
+ .msp-toast-container {
5
+ position: relative;
6
+ // bottom: $control-spacing;
7
+ // right: $control-spacing;
8
+ // margin-left: $control-spacing;
9
+ z-index: 1001;
10
+
11
+ .msp-toast-entry {
12
+ color: $font-color;
13
+ background: $control-background;
14
+ position: relative;
15
+ float: right;
16
+ min-height: $row-height;
17
+ margin-top: $control-spacing;
18
+ border: 1px solid $border-color;
19
+ display: table;
20
+
21
+ .msp-toast-title {
22
+ height: 100%;
23
+ line-height: $row-height;
24
+ padding: 0 $control-spacing;
25
+ background: $default-background;
26
+ font-weight: bold;
27
+ display: table-cell;
28
+
29
+ -webkit-user-select: none; /* Chrome/Safari */
30
+ -moz-user-select: none; /* Firefox */
31
+ -ms-user-select: none; /* IE10+ */
32
+
33
+ /* Rules below not implemented in browsers yet */
34
+ -o-user-select: none;
35
+ user-select: none;
36
+
37
+ font-weight: light;
38
+
39
+ cursor: pointer;
40
+ }
41
+
42
+ .msp-toast-message {
43
+ padding: $info-vertical-padding ($control-spacing + $row-height) $info-vertical-padding $control-spacing;
44
+ display: table-cell;
45
+
46
+ a {
47
+ text-decoration: none;
48
+ color: $msp-btn-commit-on-font-color;
49
+ font-weight: bold;
50
+
51
+ &:hover {
52
+ text-decoration: underline;
53
+ color: $msp-btn-commit-on-hover-font-color;
54
+ }
55
+
56
+ &:active, &:focus {
57
+ color: $msp-btn-commit-on-font-color;
58
+ outline-offset: 0;
59
+ outline: none;
60
+ }
61
+ }
62
+ }
63
+
64
+ .msp-toast-hide {
65
+ position: absolute;
66
+ width: $row-height + $control-spacing;
67
+ right: 0;
68
+ top: 0;
69
+ bottom: 0;
70
+
71
+ .msp-btn-icon {
72
+ background: transparent;
73
+ position: absolute;
74
+ top: 1px;
75
+ right: 0;
76
+ left: 0;
77
+ bottom: 0;
78
+ width: 100%;
79
+ text-align: right;
80
+ padding-right: math.div($control-spacing, 2);
81
+ }
82
+ }
83
+ }
84
84
  }
@@ -1,164 +1,164 @@
1
- .msp-transformer {
2
-
3
- .msp-entity-badge {
4
- position: absolute;
5
- top: 0;
6
- right: 0;
7
- height: $row-height;
8
- line-height: $row-height;
9
- width: $row-height;
10
- }
11
- }
12
-
13
- .msp-layout-right, .msp-layout-left {
14
- background: $control-background;
15
- }
16
-
17
- .msp-transformer-wrapper {
18
- position: relative;
19
- }
20
-
21
- .msp-transformer-wrapper {
22
-
23
- .msp-entity-badge {
24
- left: 0;
25
- top: 0;
26
- }
27
-
28
- &:first-child {
29
- .msp-panel-description-content {
30
- top: $row-height + 1;
31
- }
32
- }
33
-
34
- &:not(:first-child) {
35
- .msp-panel-description-content {
36
- bottom: $row-height + 1;
37
- }
38
- }
39
- }
40
-
41
- .msp-transform-wrapper {
42
- margin-bottom: $control-spacing;
43
- }
44
-
45
- .msp-transform-wrapper-collapsed {
46
- margin-bottom: 1px;
47
- }
48
-
49
- .msp-transform-update-wrapper {
50
- margin-bottom: 1px;
51
- }
52
-
53
- .msp-transform-update-wrapper-collapsed {
54
- margin-bottom: 1px;
55
- }
56
-
57
- .msp-transform-update-wrapper, .msp-transform-update-wrapper-collapsed {
58
- > .msp-transform-header > button {
59
- text-align: left;
60
- padding-left: $row-height;
61
- line-height: 24px;
62
- background: color-lower-contrast($control-background, 4%); // $control-background; // color-lower-contrast($default-background, 4%);
63
- // font-weight: bold;
64
- }
65
- }
66
-
67
- .msp-transform-wrapper > .msp-transform-header > button {
68
- text-align: left;
69
- background: $default-background; // color-lower-contrast($default-background, 4%);
70
- font-weight: bold;
71
- padding-right: 5px;
72
- }
73
-
74
- .msp-transform-header {
75
- position: relative;
76
- // border-top: 1px solid $entity-color-Behaviour; // TODO: separate color
77
-
78
- // > button {
79
- // text-align: left;
80
- // padding-left: $row-height;
81
- // background: $control-background; // color-lower-contrast($default-background, 4%);
82
- // font-weight: bold;
83
- // }
84
-
85
- > button > small {
86
- font-weight: normal;
87
- float: right;
88
- }
89
-
90
- > button {
91
- > span:first-child {
92
- margin-right: 10px;
93
- }
94
- }
95
-
96
- > button:hover {
97
- color: color-lower-contrast($font-color, 15%);
98
- }
99
- }
100
-
101
- .msp-transform-header-brand {
102
- // padding-left: 42px;
103
- margin-bottom: -1px;
104
- svg {
105
- fill: $font-color;
106
- stroke: $font-color;
107
- }
108
- // > div {
109
- // position: absolute;
110
- // height: 32px;
111
- // line-height: 32px;
112
- // width: 32px;
113
- // top: 0;
114
- // left: 0;
115
- // text-align: center;
116
- // color: #eceff3;
117
- // fill: #eceff3;
118
- // stroke: #eceff3;
119
- // font-size: 85%;
120
- // }
121
- }
122
-
123
- .msp-transform-default-params {
124
- background: $default-background;
125
- position: absolute;
126
- left: 0;
127
- top: 0;
128
- width: $row-height;
129
- padding: 0;
130
- }
131
-
132
- .msp-transform-default-params:hover {
133
- background: color-lower-contrast($default-background, 20%);
134
- }
135
-
136
- .msp-transform-apply-wrap {
137
- position: relative;
138
- margin-top: 1px;
139
- width: 100%;
140
- height: $row-height;
141
- }
142
-
143
- .msp-transform-refresh {
144
- width: $control-label-width + $control-spacing - $row-height - 1;
145
- margin-left: $row-height + 1;
146
- background: $default-background;
147
- text-align: right;
148
- }
149
-
150
- .msp-transform-apply {
151
- display: block;
152
- position: absolute;
153
- left: $control-label-width + $control-spacing;
154
- right: 0;
155
- top: 0;
156
- }
157
-
158
- .msp-transform-apply-wider {
159
- margin-left: $row-height + 1px;
160
- }
161
-
162
- .msp-data-beh {
163
- margin: $control-spacing 0 !important;
1
+ .msp-transformer {
2
+
3
+ .msp-entity-badge {
4
+ position: absolute;
5
+ top: 0;
6
+ right: 0;
7
+ height: $row-height;
8
+ line-height: $row-height;
9
+ width: $row-height;
10
+ }
11
+ }
12
+
13
+ .msp-layout-right, .msp-layout-left {
14
+ background: $control-background;
15
+ }
16
+
17
+ .msp-transformer-wrapper {
18
+ position: relative;
19
+ }
20
+
21
+ .msp-transformer-wrapper {
22
+
23
+ .msp-entity-badge {
24
+ left: 0;
25
+ top: 0;
26
+ }
27
+
28
+ &:first-child {
29
+ .msp-panel-description-content {
30
+ top: $row-height + 1;
31
+ }
32
+ }
33
+
34
+ &:not(:first-child) {
35
+ .msp-panel-description-content {
36
+ bottom: $row-height + 1;
37
+ }
38
+ }
39
+ }
40
+
41
+ .msp-transform-wrapper {
42
+ margin-bottom: $control-spacing;
43
+ }
44
+
45
+ .msp-transform-wrapper-collapsed {
46
+ margin-bottom: 1px;
47
+ }
48
+
49
+ .msp-transform-update-wrapper {
50
+ margin-bottom: 1px;
51
+ }
52
+
53
+ .msp-transform-update-wrapper-collapsed {
54
+ margin-bottom: 1px;
55
+ }
56
+
57
+ .msp-transform-update-wrapper, .msp-transform-update-wrapper-collapsed {
58
+ > .msp-transform-header > button {
59
+ text-align: left;
60
+ padding-left: $row-height;
61
+ line-height: 24px;
62
+ background: color-lower-contrast($control-background, 4%); // $control-background; // color-lower-contrast($default-background, 4%);
63
+ // font-weight: bold;
64
+ }
65
+ }
66
+
67
+ .msp-transform-wrapper > .msp-transform-header > button {
68
+ text-align: left;
69
+ background: $default-background; // color-lower-contrast($default-background, 4%);
70
+ font-weight: bold;
71
+ padding-right: 5px;
72
+ }
73
+
74
+ .msp-transform-header {
75
+ position: relative;
76
+ // border-top: 1px solid $entity-color-Behaviour; // TODO: separate color
77
+
78
+ // > button {
79
+ // text-align: left;
80
+ // padding-left: $row-height;
81
+ // background: $control-background; // color-lower-contrast($default-background, 4%);
82
+ // font-weight: bold;
83
+ // }
84
+
85
+ > button > small {
86
+ font-weight: normal;
87
+ float: right;
88
+ }
89
+
90
+ > button {
91
+ > span:first-child {
92
+ margin-right: 10px;
93
+ }
94
+ }
95
+
96
+ > button:hover {
97
+ color: color-lower-contrast($font-color, 15%);
98
+ }
99
+ }
100
+
101
+ .msp-transform-header-brand {
102
+ // padding-left: 42px;
103
+ margin-bottom: -1px;
104
+ svg {
105
+ fill: $font-color;
106
+ stroke: $font-color;
107
+ }
108
+ // > div {
109
+ // position: absolute;
110
+ // height: 32px;
111
+ // line-height: 32px;
112
+ // width: 32px;
113
+ // top: 0;
114
+ // left: 0;
115
+ // text-align: center;
116
+ // color: #eceff3;
117
+ // fill: #eceff3;
118
+ // stroke: #eceff3;
119
+ // font-size: 85%;
120
+ // }
121
+ }
122
+
123
+ .msp-transform-default-params {
124
+ background: $default-background;
125
+ position: absolute;
126
+ left: 0;
127
+ top: 0;
128
+ width: $row-height;
129
+ padding: 0;
130
+ }
131
+
132
+ .msp-transform-default-params:hover {
133
+ background: color-lower-contrast($default-background, 20%);
134
+ }
135
+
136
+ .msp-transform-apply-wrap {
137
+ position: relative;
138
+ margin-top: 1px;
139
+ width: 100%;
140
+ height: $row-height;
141
+ }
142
+
143
+ .msp-transform-refresh {
144
+ width: $control-label-width + $control-spacing - $row-height - 1;
145
+ margin-left: $row-height + 1;
146
+ background: $default-background;
147
+ text-align: right;
148
+ }
149
+
150
+ .msp-transform-apply {
151
+ display: block;
152
+ position: absolute;
153
+ left: $control-label-width + $control-spacing;
154
+ right: 0;
155
+ top: 0;
156
+ }
157
+
158
+ .msp-transform-apply-wider {
159
+ margin-left: $row-height + 1px;
160
+ }
161
+
162
+ .msp-data-beh {
163
+ margin: $control-spacing 0 !important;
164
164
  }