molstar 3.26.0 → 3.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (499) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +115 -115
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +2 -0
  9. package/lib/apps/docking-viewer/viewport.js +1 -0
  10. package/lib/apps/viewer/app.d.ts +3 -1
  11. package/lib/apps/viewer/app.js +4 -0
  12. package/lib/apps/viewer/embedded.html +52 -52
  13. package/lib/apps/viewer/index.html +115 -115
  14. package/lib/cli/structure-info/volume.js +1 -1
  15. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -0
  16. package/lib/commonjs/apps/docking-viewer/viewport.js +1 -0
  17. package/lib/commonjs/apps/viewer/app.d.ts +3 -1
  18. package/lib/commonjs/apps/viewer/app.js +4 -0
  19. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  20. package/lib/commonjs/examples/lighting/index.js +1 -1
  21. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  22. package/lib/commonjs/extensions/cellpack/model.js +2 -1
  23. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  24. package/lib/commonjs/extensions/meshes/choice.d.ts +26 -0
  25. package/lib/commonjs/extensions/meshes/choice.js +31 -0
  26. package/lib/commonjs/extensions/meshes/examples.d.ts +26 -0
  27. package/lib/commonjs/extensions/meshes/examples.js +337 -0
  28. package/lib/commonjs/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  29. package/lib/commonjs/extensions/meshes/mesh-cif-schema.js +34 -0
  30. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +66 -0
  31. package/lib/commonjs/extensions/meshes/mesh-extension.js +221 -0
  32. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  33. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.js +379 -0
  34. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  35. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.js +30 -0
  36. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  37. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.js +273 -0
  38. package/lib/commonjs/extensions/meshes/mesh-utils.d.ts +41 -0
  39. package/lib/commonjs/extensions/meshes/mesh-utils.js +357 -0
  40. package/lib/commonjs/extensions/meshes/metadata.d.ts +108 -0
  41. package/lib/commonjs/extensions/meshes/metadata.js +72 -0
  42. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  43. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  44. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +16 -4
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  46. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  47. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  48. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.js +156 -0
  49. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  50. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.js +96 -0
  51. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
  52. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +576 -0
  53. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
  54. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.js +200 -0
  55. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
  56. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.js +32 -0
  57. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
  58. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.js +234 -0
  59. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
  60. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +85 -0
  61. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
  62. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.js +83 -0
  63. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
  64. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +171 -0
  65. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +20 -0
  66. package/lib/commonjs/extensions/volumes-and-segmentations/index.js +130 -0
  67. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
  68. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.js +85 -0
  69. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +29 -0
  70. package/lib/commonjs/extensions/volumes-and-segmentations/ui.js +232 -0
  71. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
  72. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.js +83 -0
  73. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.d.ts +92 -0
  74. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.js +7 -0
  75. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.d.ts +23 -0
  76. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.js +78 -0
  77. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  78. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  79. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  80. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -1
  81. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +27 -13
  82. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  83. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
  84. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  85. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  86. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  87. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
  88. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
  89. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +4 -6
  90. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
  91. package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
  92. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -0
  93. package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
  94. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  95. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  96. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.d.ts +1 -1
  97. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +1 -1
  98. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +1 -1
  99. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +1 -1
  100. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +2 -2
  101. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +2 -2
  102. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  103. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  104. package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
  105. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
  106. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  107. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  108. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +1 -1
  109. package/lib/commonjs/mol-gl/shader/outlines.frag.js +1 -1
  110. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  111. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  112. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  113. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  114. package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
  115. package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
  116. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +1 -1
  117. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +15 -0
  118. package/lib/commonjs/mol-gl/webgl/state.d.ts +12 -0
  119. package/lib/commonjs/mol-gl/webgl/state.js +136 -0
  120. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.d.ts +38 -0
  121. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.js +22 -0
  122. package/lib/commonjs/mol-io/reader/cif.d.ts +3 -1
  123. package/lib/commonjs/mol-io/reader/cif.js +3 -1
  124. package/lib/commonjs/mol-model/location.d.ts +2 -1
  125. package/lib/commonjs/mol-model/loci.d.ts +11 -11
  126. package/lib/commonjs/mol-model/loci.js +13 -1
  127. package/lib/commonjs/mol-model/sequence/alignment/sequence.d.ts +4 -1
  128. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +4 -1
  129. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -0
  130. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +8 -0
  131. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +21 -5
  132. package/lib/commonjs/mol-model/structure/structure/util/superposition.d.ts +1 -0
  133. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +2 -1
  134. package/lib/commonjs/mol-model/volume/volume.d.ts +35 -2
  135. package/lib/commonjs/mol-model/volume/volume.js +77 -2
  136. package/lib/commonjs/mol-model-formats/volume/segmentation.d.ts +23 -0
  137. package/lib/commonjs/mol-model-formats/volume/segmentation.js +138 -0
  138. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  139. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
  140. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +2 -1
  141. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  142. package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
  143. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +4 -1
  144. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
  145. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
  146. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +13 -4
  147. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +6 -1
  148. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -0
  149. package/lib/commonjs/mol-plugin-state/formats/provider.d.ts +2 -2
  150. package/lib/commonjs/mol-plugin-state/formats/provider.js +11 -3
  151. package/lib/commonjs/mol-plugin-state/formats/registry.js +6 -5
  152. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +27 -0
  153. package/lib/commonjs/mol-plugin-state/formats/volume.js +65 -1
  154. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
  155. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +18 -13
  156. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -2
  157. package/lib/commonjs/mol-plugin-state/transforms/representation.js +5 -6
  158. package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +11 -1
  159. package/lib/commonjs/mol-plugin-state/transforms/volume.js +55 -2
  160. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +1 -0
  161. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +33 -13
  162. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -0
  163. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +22 -5
  164. package/lib/commonjs/mol-plugin-ui/sequence/sequence.d.ts +25 -17
  165. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +19 -1
  166. package/lib/commonjs/mol-plugin-ui/sequence.js +8 -1
  167. package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -10
  168. package/lib/commonjs/mol-plugin-ui/state/apply-action.js +2 -2
  169. package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +2 -2
  170. package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +1 -1
  171. package/lib/commonjs/mol-plugin-ui/structure/volume.d.ts +1 -1
  172. package/lib/commonjs/mol-plugin-ui/structure/volume.js +3 -2
  173. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -0
  174. package/lib/commonjs/mol-repr/structure/params.d.ts +2 -0
  175. package/lib/commonjs/mol-repr/structure/registry.d.ts +12 -0
  176. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
  177. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -0
  178. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -0
  179. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  180. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  181. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
  182. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  183. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
  184. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +6 -0
  185. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +2 -0
  186. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -0
  187. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -0
  188. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  189. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +1 -0
  190. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -0
  191. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -0
  192. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  193. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +1 -0
  194. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
  195. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +2 -1
  196. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
  197. package/lib/commonjs/mol-repr/structure/visual/element-point.js +2 -1
  198. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  199. package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +3 -1
  200. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  201. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +6 -2
  202. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  203. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -1
  204. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  205. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -1
  206. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  207. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +4 -0
  208. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  209. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +2 -0
  210. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  211. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  212. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -0
  213. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +18 -7
  214. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +4 -1
  215. package/lib/commonjs/mol-repr/structure/visual/util/common.js +10 -6
  216. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +1 -0
  217. package/lib/commonjs/mol-repr/structure/visual/util/element.js +2 -3
  218. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +2 -0
  219. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +4 -4
  220. package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -6
  221. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +4 -4
  222. package/lib/commonjs/mol-repr/volume/isosurface.js +17 -16
  223. package/lib/commonjs/mol-repr/volume/registry.d.ts +54 -1
  224. package/lib/commonjs/mol-repr/volume/registry.js +3 -1
  225. package/lib/commonjs/mol-repr/volume/representation.d.ts +11 -7
  226. package/lib/commonjs/mol-repr/volume/representation.js +142 -47
  227. package/lib/commonjs/mol-repr/volume/segment.d.ts +291 -0
  228. package/lib/commonjs/mol-repr/volume/segment.js +289 -0
  229. package/lib/commonjs/mol-repr/volume/slice.d.ts +2 -2
  230. package/lib/commonjs/mol-repr/volume/slice.js +5 -5
  231. package/lib/commonjs/mol-repr/volume/util.d.ts +12 -3
  232. package/lib/commonjs/mol-repr/volume/util.js +72 -6
  233. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  234. package/lib/commonjs/mol-theme/color/volume-segment.d.ts +41 -0
  235. package/lib/commonjs/mol-theme/color/volume-segment.js +58 -0
  236. package/lib/commonjs/mol-theme/color/volume-value.js +2 -1
  237. package/lib/commonjs/mol-theme/color.d.ts +15 -0
  238. package/lib/commonjs/mol-theme/color.js +2 -0
  239. package/lib/commonjs/mol-theme/label.d.ts +1 -1
  240. package/lib/commonjs/mol-theme/label.js +13 -1
  241. package/lib/commonjs/mol-util/param-definition.d.ts +4 -1
  242. package/lib/commonjs/mol-util/param-definition.js +5 -2
  243. package/lib/examples/alpha-orbitals/index.html +72 -72
  244. package/lib/examples/basic-wrapper/index.html +137 -137
  245. package/lib/examples/lighting/index.html +88 -88
  246. package/lib/examples/lighting/index.js +1 -1
  247. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  248. package/lib/extensions/anvil/behavior.d.ts +1 -0
  249. package/lib/extensions/cellpack/model.js +2 -1
  250. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  251. package/lib/extensions/meshes/choice.d.ts +26 -0
  252. package/lib/extensions/meshes/choice.js +28 -0
  253. package/lib/extensions/meshes/examples.d.ts +26 -0
  254. package/lib/extensions/meshes/examples.js +325 -0
  255. package/lib/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  256. package/lib/extensions/meshes/mesh-cif-schema.js +30 -0
  257. package/lib/extensions/meshes/mesh-extension.d.ts +66 -0
  258. package/lib/extensions/meshes/mesh-extension.js +218 -0
  259. package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  260. package/lib/extensions/meshes/mesh-streaming/behavior.js +375 -0
  261. package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  262. package/lib/extensions/meshes/mesh-streaming/server-info.js +26 -0
  263. package/lib/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  264. package/lib/extensions/meshes/mesh-streaming/transformers.js +270 -0
  265. package/lib/extensions/meshes/mesh-utils.d.ts +41 -0
  266. package/lib/extensions/meshes/mesh-utils.js +346 -0
  267. package/lib/extensions/meshes/metadata.d.ts +108 -0
  268. package/lib/extensions/meshes/metadata.js +69 -0
  269. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  270. package/lib/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  271. package/lib/extensions/model-archive/quality-assessment/prop.js +16 -4
  272. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  273. package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  274. package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  275. package/lib/extensions/volumes-and-segmentations/entry-meshes.js +153 -0
  276. package/lib/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  277. package/lib/extensions/volumes-and-segmentations/entry-models.js +93 -0
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@@ -1,126 +1,126 @@
1
- .msp-sequence {
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- position: absolute;
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- right: 0;
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- top: 0;
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- left: 0;
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- bottom: 0;
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- background: $sequence-background;
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- }
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-
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- $sequence-select-height: 24px;
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- .msp-sequence-select {
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- position: relative;
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- height: $sequence-select-height;
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- width: 100%;
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- margin-bottom: 1px;
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- background: $control-background;
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- text-align: left;
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-
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- > span {
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- display: inline-block;
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- line-height: $sequence-select-height;
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- padding: 0 $control-spacing;
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- font-size: 85%;
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- font-weight: bold;
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- cursor: default;
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- }
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-
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- > select {
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- display: inline-block;
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- max-width: 120px;
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- width: auto;
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- text-overflow: ellipsis;
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- font-size: 85%;
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- height: $sequence-select-height;
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- line-height: $sequence-select-height;
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- background-size: 6px 8px;
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- background-color: $control-background;
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- }
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- }
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-
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- .msp-sequence-wrapper {
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- word-break: break-word;
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- // use $control-spacing for top to have space for sequence numebrs
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- padding: $control-spacing $control-spacing $info-vertical-padding $control-spacing;
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- user-select: none;
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- }
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-
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- .msp-sequence-wrapper-non-empty {
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- font-size: 85%;
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- line-height: 180%;
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- font-family: "Courier New", monospace;
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- background: $msp-form-control-background;
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-
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- width: 100%;
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- overflow-y: auto;
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- overflow-x: hidden;
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- position: absolute;
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- top: $sequence-select-height + 1px;
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- left: 0;
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- bottom: 0;
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- right: 0;
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- }
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-
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- .msp-sequence-chain-label {
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- margin-left: $control-spacing;
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- margin-top: $control-spacing;
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- user-select: none;
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- color: $sequence-number-color;
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- font-size: 90%;
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- line-height: 90%;
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- padding-left: 0.2em;
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- }
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-
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- .msp-sequence-wrapper {
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- span {
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- cursor: pointer;
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- }
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-
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- .msp-sequence-residue-long {
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- margin: 0em 0.2em 0em 0.2em;
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- }
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-
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- .msp-sequence-residue-long-begin {
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- margin: 0em 0.2em 0em 0em;
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- }
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-
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- .msp-sequence-label {
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- color: $sequence-number-color;
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- font-size: 90%;
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- line-height: 90%;
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- padding-bottom: 1em;
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- padding-left: 0.2em;
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- }
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-
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- .msp-sequence-number {
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- color: $sequence-number-color;
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- word-break: keep-all;
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- cursor: default;
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- position: relative;
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- top: -1.1em;
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- left: 3.1em;
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- padding: 0px;
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- margin-left: -3em;
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- font-size: 80%;
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- }
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-
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- .msp-sequence-number-long {
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- left: 3.3em;
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- }
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-
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- .msp-sequence-number-long-negative {
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- left: 2.7em;
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- }
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-
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- .msp-sequence-number-negative {
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- left: 2.5em;
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- }
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-
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- .msp-sequence-present {
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- color: $font-color;
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- }
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-
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- .msp-sequence-missing {
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- color: color-lower-contrast($font-color, 33%);
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- }
1
+ .msp-sequence {
2
+ position: absolute;
3
+ right: 0;
4
+ top: 0;
5
+ left: 0;
6
+ bottom: 0;
7
+ background: $sequence-background;
8
+ }
9
+
10
+ $sequence-select-height: 24px;
11
+ .msp-sequence-select {
12
+ position: relative;
13
+ height: $sequence-select-height;
14
+ width: 100%;
15
+ margin-bottom: 1px;
16
+ background: $control-background;
17
+ text-align: left;
18
+
19
+ > span {
20
+ display: inline-block;
21
+ line-height: $sequence-select-height;
22
+ padding: 0 $control-spacing;
23
+ font-size: 85%;
24
+ font-weight: bold;
25
+ cursor: default;
26
+ }
27
+
28
+ > select {
29
+ display: inline-block;
30
+ max-width: 120px;
31
+ width: auto;
32
+ text-overflow: ellipsis;
33
+ font-size: 85%;
34
+ height: $sequence-select-height;
35
+ line-height: $sequence-select-height;
36
+ background-size: 6px 8px;
37
+ background-color: $control-background;
38
+ }
39
+ }
40
+
41
+ .msp-sequence-wrapper {
42
+ word-break: break-word;
43
+ // use $control-spacing for top to have space for sequence numebrs
44
+ padding: $control-spacing $control-spacing $info-vertical-padding $control-spacing;
45
+ user-select: none;
46
+ }
47
+
48
+ .msp-sequence-wrapper-non-empty {
49
+ font-size: 85%;
50
+ line-height: 180%;
51
+ font-family: "Courier New", monospace;
52
+ background: $msp-form-control-background;
53
+
54
+ width: 100%;
55
+ overflow-y: auto;
56
+ overflow-x: hidden;
57
+ position: absolute;
58
+ top: $sequence-select-height + 1px;
59
+ left: 0;
60
+ bottom: 0;
61
+ right: 0;
62
+ }
63
+
64
+ .msp-sequence-chain-label {
65
+ margin-left: $control-spacing;
66
+ margin-top: $control-spacing;
67
+ user-select: none;
68
+ color: $sequence-number-color;
69
+ font-size: 90%;
70
+ line-height: 90%;
71
+ padding-left: 0.2em;
72
+ }
73
+
74
+ .msp-sequence-wrapper {
75
+ span {
76
+ cursor: pointer;
77
+ }
78
+
79
+ .msp-sequence-residue-long {
80
+ margin: 0em 0.2em 0em 0.2em;
81
+ }
82
+
83
+ .msp-sequence-residue-long-begin {
84
+ margin: 0em 0.2em 0em 0em;
85
+ }
86
+
87
+ .msp-sequence-label {
88
+ color: $sequence-number-color;
89
+ font-size: 90%;
90
+ line-height: 90%;
91
+ padding-bottom: 1em;
92
+ padding-left: 0.2em;
93
+ }
94
+
95
+ .msp-sequence-number {
96
+ color: $sequence-number-color;
97
+ word-break: keep-all;
98
+ cursor: default;
99
+ position: relative;
100
+ top: -1.1em;
101
+ left: 3.1em;
102
+ padding: 0px;
103
+ margin-left: -3em;
104
+ font-size: 80%;
105
+ }
106
+
107
+ .msp-sequence-number-long {
108
+ left: 3.3em;
109
+ }
110
+
111
+ .msp-sequence-number-long-negative {
112
+ left: 2.7em;
113
+ }
114
+
115
+ .msp-sequence-number-negative {
116
+ left: 2.5em;
117
+ }
118
+
119
+ .msp-sequence-present {
120
+ color: $font-color;
121
+ }
122
+
123
+ .msp-sequence-missing {
124
+ color: color-lower-contrast($font-color, 33%);
125
+ }
126
126
  }
@@ -1,166 +1,166 @@
1
- @mixin borderBox {
2
- box-sizing: border-box;
3
- -webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
4
-
5
- * {
6
- box-sizing: border-box;
7
- -webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
8
- }
9
- }
10
-
11
- .msp-slider-base {
12
- position: relative;
13
- height: 14px;
14
- padding: 5px 0;
15
- width: 100%;
16
- border-radius: $slider-border-radius-base;
17
- align-self: center;
18
- @include borderBox;
19
-
20
- &-rail {
21
- position: absolute;
22
- width: 100%;
23
- background-color: $control-background;
24
- height: 4px;
25
- border-radius: 2px;
26
- }
27
-
28
- &-track {
29
- position: absolute;
30
- left: 0;
31
- height: 4px;
32
- border-radius: $slider-border-radius-base;
33
- background-color: tint($font-color, 60%);
34
- }
35
-
36
- &-handle {
37
- position: absolute;
38
- margin-left: -11px;
39
- margin-top: -9px;
40
- width: 22px;
41
- height: 22px;
42
- cursor: pointer;
43
- border-radius: 50%;
44
- background-color: $font-color;
45
- border: 4px solid $control-background;
46
-
47
- &:hover {
48
- background-color: $hover-font-color;
49
- }
50
- }
51
-
52
- &-mark {
53
- position: absolute;
54
- top: 18px;
55
- left: 0;
56
- width: 100%;
57
- font-size: 12px;
58
- }
59
-
60
- &-mark-text {
61
- position: absolute;
62
- display: inline-block;
63
- vertical-align: middle;
64
- text-align: center;
65
- cursor: pointer;
66
- color: #999;
67
-
68
- &-active {
69
- color: #666;
70
- }
71
- }
72
-
73
- &-step {
74
- position: absolute;
75
- width: 100%;
76
- height: 4px;
77
- background: transparent;
78
- }
79
-
80
- &-dot {
81
- position: absolute;
82
- bottom: -2px;
83
- margin-left: -4px;
84
- width: 8px;
85
- height: 8px;
86
- border: 2px solid #e9e9e9;
87
- background-color: #fff;
88
- cursor: pointer;
89
- border-radius: 50%;
90
- vertical-align: middle;
91
- &:first-child {
92
- margin-left: -4px;
93
- }
94
- &:last-child {
95
- margin-left: -4px;
96
- }
97
- &-active {
98
- border-color: tint($font-color, 50%);
99
- }
100
- }
101
-
102
- &-disabled {
103
- background: $default-background;
104
- opacity: 0.35;
105
-
106
- // .msp-slider-base-track {
107
- // background-color: $slider-disabledColor;
108
- // }
109
-
110
- .msp-slider-base-handle, .msp-slider-base-dot {
111
- // border-color: $slider-disabledColor;
112
- // background-color: color-lower-contrast($font-color, 10%);
113
- cursor: not-allowed;
114
- }
115
-
116
- .msp-slider-base-mark-text, .msp-slider-base-dot {
117
- cursor: not-allowed!important;
118
- }
119
- }
120
- }
121
-
122
- // .msp-slider-base-vertical {
123
- // width: 14px;
124
- // height: 100%;
125
- // padding: 0 5px;
126
-
127
- // .msp-slider-base {
128
- // &-rail {
129
- // height: 100%;
130
- // width: 4px;
131
- // }
132
-
133
- // &-track {
134
- // left: 5px;
135
- // bottom: 0;
136
- // width: 4px;
137
- // }
138
-
139
- // &-handle {
140
- // margin-left: -5px;
141
- // margin-bottom: -7px;
142
- // }
143
-
144
- // &-mark {
145
- // top: 0;
146
- // left: 18px;
147
- // height: 100%;
148
- // }
149
-
150
- // &-step {
151
- // height: 100%;
152
- // width: 4px;
153
- // }
154
-
155
- // &-dot {
156
- // left: 2px;
157
- // margin-bottom: -4px;
158
- // &:first-child {
159
- // margin-bottom: -4px;
160
- // }
161
- // &:last-child {
162
- // margin-bottom: -4px;
163
- // }
164
- // }
165
- // }
1
+ @mixin borderBox {
2
+ box-sizing: border-box;
3
+ -webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
4
+
5
+ * {
6
+ box-sizing: border-box;
7
+ -webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
8
+ }
9
+ }
10
+
11
+ .msp-slider-base {
12
+ position: relative;
13
+ height: 14px;
14
+ padding: 5px 0;
15
+ width: 100%;
16
+ border-radius: $slider-border-radius-base;
17
+ align-self: center;
18
+ @include borderBox;
19
+
20
+ &-rail {
21
+ position: absolute;
22
+ width: 100%;
23
+ background-color: $control-background;
24
+ height: 4px;
25
+ border-radius: 2px;
26
+ }
27
+
28
+ &-track {
29
+ position: absolute;
30
+ left: 0;
31
+ height: 4px;
32
+ border-radius: $slider-border-radius-base;
33
+ background-color: tint($font-color, 60%);
34
+ }
35
+
36
+ &-handle {
37
+ position: absolute;
38
+ margin-left: -11px;
39
+ margin-top: -9px;
40
+ width: 22px;
41
+ height: 22px;
42
+ cursor: pointer;
43
+ border-radius: 50%;
44
+ background-color: $font-color;
45
+ border: 4px solid $control-background;
46
+
47
+ &:hover {
48
+ background-color: $hover-font-color;
49
+ }
50
+ }
51
+
52
+ &-mark {
53
+ position: absolute;
54
+ top: 18px;
55
+ left: 0;
56
+ width: 100%;
57
+ font-size: 12px;
58
+ }
59
+
60
+ &-mark-text {
61
+ position: absolute;
62
+ display: inline-block;
63
+ vertical-align: middle;
64
+ text-align: center;
65
+ cursor: pointer;
66
+ color: #999;
67
+
68
+ &-active {
69
+ color: #666;
70
+ }
71
+ }
72
+
73
+ &-step {
74
+ position: absolute;
75
+ width: 100%;
76
+ height: 4px;
77
+ background: transparent;
78
+ }
79
+
80
+ &-dot {
81
+ position: absolute;
82
+ bottom: -2px;
83
+ margin-left: -4px;
84
+ width: 8px;
85
+ height: 8px;
86
+ border: 2px solid #e9e9e9;
87
+ background-color: #fff;
88
+ cursor: pointer;
89
+ border-radius: 50%;
90
+ vertical-align: middle;
91
+ &:first-child {
92
+ margin-left: -4px;
93
+ }
94
+ &:last-child {
95
+ margin-left: -4px;
96
+ }
97
+ &-active {
98
+ border-color: tint($font-color, 50%);
99
+ }
100
+ }
101
+
102
+ &-disabled {
103
+ background: $default-background;
104
+ opacity: 0.35;
105
+
106
+ // .msp-slider-base-track {
107
+ // background-color: $slider-disabledColor;
108
+ // }
109
+
110
+ .msp-slider-base-handle, .msp-slider-base-dot {
111
+ // border-color: $slider-disabledColor;
112
+ // background-color: color-lower-contrast($font-color, 10%);
113
+ cursor: not-allowed;
114
+ }
115
+
116
+ .msp-slider-base-mark-text, .msp-slider-base-dot {
117
+ cursor: not-allowed!important;
118
+ }
119
+ }
120
+ }
121
+
122
+ // .msp-slider-base-vertical {
123
+ // width: 14px;
124
+ // height: 100%;
125
+ // padding: 0 5px;
126
+
127
+ // .msp-slider-base {
128
+ // &-rail {
129
+ // height: 100%;
130
+ // width: 4px;
131
+ // }
132
+
133
+ // &-track {
134
+ // left: 5px;
135
+ // bottom: 0;
136
+ // width: 4px;
137
+ // }
138
+
139
+ // &-handle {
140
+ // margin-left: -5px;
141
+ // margin-bottom: -7px;
142
+ // }
143
+
144
+ // &-mark {
145
+ // top: 0;
146
+ // left: 18px;
147
+ // height: 100%;
148
+ // }
149
+
150
+ // &-step {
151
+ // height: 100%;
152
+ // width: 4px;
153
+ // }
154
+
155
+ // &-dot {
156
+ // left: 2px;
157
+ // margin-bottom: -4px;
158
+ // &:first-child {
159
+ // margin-bottom: -4px;
160
+ // }
161
+ // &:last-child {
162
+ // margin-bottom: -4px;
163
+ // }
164
+ // }
165
+ // }
166
166
  // }