molstar 3.26.0 → 3.28.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +202 -202
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +115 -115
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +2 -0
- package/lib/apps/docking-viewer/viewport.js +1 -0
- package/lib/apps/viewer/app.d.ts +3 -1
- package/lib/apps/viewer/app.js +4 -0
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +115 -115
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -0
- package/lib/commonjs/apps/docking-viewer/viewport.js +1 -0
- package/lib/commonjs/apps/viewer/app.d.ts +3 -1
- package/lib/commonjs/apps/viewer/app.js +4 -0
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/examples/lighting/index.js +1 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/cellpack/model.js +2 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/meshes/choice.d.ts +26 -0
- package/lib/commonjs/extensions/meshes/choice.js +31 -0
- package/lib/commonjs/extensions/meshes/examples.d.ts +26 -0
- package/lib/commonjs/extensions/meshes/examples.js +337 -0
- package/lib/commonjs/extensions/meshes/mesh-cif-schema.d.ts +29 -0
- package/lib/commonjs/extensions/meshes/mesh-cif-schema.js +34 -0
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +66 -0
- package/lib/commonjs/extensions/meshes/mesh-extension.js +221 -0
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.js +379 -0
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.js +30 -0
- package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
- package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.js +273 -0
- package/lib/commonjs/extensions/meshes/mesh-utils.d.ts +41 -0
- package/lib/commonjs/extensions/meshes/mesh-utils.js +357 -0
- package/lib/commonjs/extensions/meshes/metadata.d.ts +108 -0
- package/lib/commonjs/extensions/meshes/metadata.js +72 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +16 -4
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.js +156 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.js +96 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +576 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.js +200 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.js +32 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.js +234 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +85 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.js +83 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +171 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +20 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/index.js +130 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/transformers.js +85 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +29 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.js +232 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.js +83 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.d.ts +92 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.js +7 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.d.ts +23 -0
- package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.js +78 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +27 -13
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +4 -6
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/outlines.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
- package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/renderbuffer.js +15 -0
- package/lib/commonjs/mol-gl/webgl/state.d.ts +12 -0
- package/lib/commonjs/mol-gl/webgl/state.js +136 -0
- package/lib/commonjs/mol-io/reader/cif/schema/segmentation.d.ts +38 -0
- package/lib/commonjs/mol-io/reader/cif/schema/segmentation.js +22 -0
- package/lib/commonjs/mol-io/reader/cif.d.ts +3 -1
- package/lib/commonjs/mol-io/reader/cif.js +3 -1
- package/lib/commonjs/mol-model/location.d.ts +2 -1
- package/lib/commonjs/mol-model/loci.d.ts +11 -11
- package/lib/commonjs/mol-model/loci.js +13 -1
- package/lib/commonjs/mol-model/sequence/alignment/sequence.d.ts +4 -1
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +4 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -0
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +8 -0
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +21 -5
- package/lib/commonjs/mol-model/structure/structure/util/superposition.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/structure/util/superposition.js +2 -1
- package/lib/commonjs/mol-model/volume/volume.d.ts +35 -2
- package/lib/commonjs/mol-model/volume/volume.js +77 -2
- package/lib/commonjs/mol-model-formats/volume/segmentation.d.ts +23 -0
- package/lib/commonjs/mol-model-formats/volume/segmentation.js +138 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +2 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +4 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +13 -4
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +6 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -0
- package/lib/commonjs/mol-plugin-state/formats/provider.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/formats/provider.js +11 -3
- package/lib/commonjs/mol-plugin-state/formats/registry.js +6 -5
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +27 -0
- package/lib/commonjs/mol-plugin-state/formats/volume.js +65 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +18 -13
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -2
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +5 -6
- package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +11 -1
- package/lib/commonjs/mol-plugin-state/transforms/volume.js +55 -2
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +1 -0
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +33 -13
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -0
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +22 -5
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.d.ts +25 -17
- package/lib/commonjs/mol-plugin-ui/sequence.d.ts +19 -1
- package/lib/commonjs/mol-plugin-ui/sequence.js +8 -1
- package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -10
- package/lib/commonjs/mol-plugin-ui/state/apply-action.js +2 -2
- package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +2 -2
- package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/volume.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/volume.js +3 -2
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/params.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/registry.d.ts +12 -0
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +6 -0
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.js +2 -1
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +3 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +6 -2
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +4 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -0
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +18 -7
- package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +4 -1
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +10 -6
- package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +1 -0
- package/lib/commonjs/mol-repr/structure/visual/util/element.js +2 -3
- package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +2 -0
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +4 -4
- package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -6
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +4 -4
- package/lib/commonjs/mol-repr/volume/isosurface.js +17 -16
- package/lib/commonjs/mol-repr/volume/registry.d.ts +54 -1
- package/lib/commonjs/mol-repr/volume/registry.js +3 -1
- package/lib/commonjs/mol-repr/volume/representation.d.ts +11 -7
- package/lib/commonjs/mol-repr/volume/representation.js +142 -47
- package/lib/commonjs/mol-repr/volume/segment.d.ts +291 -0
- package/lib/commonjs/mol-repr/volume/segment.js +289 -0
- package/lib/commonjs/mol-repr/volume/slice.d.ts +2 -2
- package/lib/commonjs/mol-repr/volume/slice.js +5 -5
- package/lib/commonjs/mol-repr/volume/util.d.ts +12 -3
- package/lib/commonjs/mol-repr/volume/util.js +72 -6
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-theme/color/volume-segment.d.ts +41 -0
- package/lib/commonjs/mol-theme/color/volume-segment.js +58 -0
- package/lib/commonjs/mol-theme/color/volume-value.js +2 -1
- package/lib/commonjs/mol-theme/color.d.ts +15 -0
- package/lib/commonjs/mol-theme/color.js +2 -0
- package/lib/commonjs/mol-theme/label.d.ts +1 -1
- package/lib/commonjs/mol-theme/label.js +13 -1
- package/lib/commonjs/mol-util/param-definition.d.ts +4 -1
- package/lib/commonjs/mol-util/param-definition.js +5 -2
- package/lib/examples/alpha-orbitals/index.html +72 -72
- package/lib/examples/basic-wrapper/index.html +137 -137
- package/lib/examples/lighting/index.html +88 -88
- package/lib/examples/lighting/index.js +1 -1
- package/lib/examples/proteopedia-wrapper/index.html +236 -236
- package/lib/extensions/anvil/behavior.d.ts +1 -0
- package/lib/extensions/cellpack/model.js +2 -1
- package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
- package/lib/extensions/meshes/choice.d.ts +26 -0
- package/lib/extensions/meshes/choice.js +28 -0
- package/lib/extensions/meshes/examples.d.ts +26 -0
- package/lib/extensions/meshes/examples.js +325 -0
- package/lib/extensions/meshes/mesh-cif-schema.d.ts +29 -0
- package/lib/extensions/meshes/mesh-cif-schema.js +30 -0
- package/lib/extensions/meshes/mesh-extension.d.ts +66 -0
- package/lib/extensions/meshes/mesh-extension.js +218 -0
- package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
- package/lib/extensions/meshes/mesh-streaming/behavior.js +375 -0
- package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
- package/lib/extensions/meshes/mesh-streaming/server-info.js +26 -0
- package/lib/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
- package/lib/extensions/meshes/mesh-streaming/transformers.js +270 -0
- package/lib/extensions/meshes/mesh-utils.d.ts +41 -0
- package/lib/extensions/meshes/mesh-utils.js +346 -0
- package/lib/extensions/meshes/metadata.d.ts +108 -0
- package/lib/extensions/meshes/metadata.js +69 -0
- package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
- package/lib/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
- package/lib/extensions/model-archive/quality-assessment/prop.js +16 -4
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
- package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -0
- package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
- package/lib/extensions/volumes-and-segmentations/entry-meshes.js +153 -0
- package/lib/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
- package/lib/extensions/volumes-and-segmentations/entry-models.js +93 -0
- package/lib/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
- package/lib/extensions/volumes-and-segmentations/entry-root.js +571 -0
- package/lib/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
- package/lib/extensions/volumes-and-segmentations/entry-segmentation.js +197 -0
- package/lib/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
- package/lib/extensions/volumes-and-segmentations/entry-state.js +29 -0
- package/lib/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
- package/lib/extensions/volumes-and-segmentations/entry-volume.js +231 -0
- package/lib/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
- package/lib/extensions/volumes-and-segmentations/external-api.js +80 -0
- package/lib/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
- package/lib/extensions/volumes-and-segmentations/global-state.js +80 -0
- package/lib/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
- package/lib/extensions/volumes-and-segmentations/helpers.js +163 -0
- package/lib/extensions/volumes-and-segmentations/index.d.ts +20 -0
- package/lib/extensions/volumes-and-segmentations/index.js +127 -0
- package/lib/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
- package/lib/extensions/volumes-and-segmentations/transformers.js +82 -0
- package/lib/extensions/volumes-and-segmentations/ui.d.ts +29 -0
- package/lib/extensions/volumes-and-segmentations/ui.js +229 -0
- package/lib/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
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9
|
+
|
|
10
|
+
$sequence-select-height: 24px;
|
|
11
|
+
.msp-sequence-select {
|
|
12
|
+
position: relative;
|
|
13
|
+
height: $sequence-select-height;
|
|
14
|
+
width: 100%;
|
|
15
|
+
margin-bottom: 1px;
|
|
16
|
+
background: $control-background;
|
|
17
|
+
text-align: left;
|
|
18
|
+
|
|
19
|
+
> span {
|
|
20
|
+
display: inline-block;
|
|
21
|
+
line-height: $sequence-select-height;
|
|
22
|
+
padding: 0 $control-spacing;
|
|
23
|
+
font-size: 85%;
|
|
24
|
+
font-weight: bold;
|
|
25
|
+
cursor: default;
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
> select {
|
|
29
|
+
display: inline-block;
|
|
30
|
+
max-width: 120px;
|
|
31
|
+
width: auto;
|
|
32
|
+
text-overflow: ellipsis;
|
|
33
|
+
font-size: 85%;
|
|
34
|
+
height: $sequence-select-height;
|
|
35
|
+
line-height: $sequence-select-height;
|
|
36
|
+
background-size: 6px 8px;
|
|
37
|
+
background-color: $control-background;
|
|
38
|
+
}
|
|
39
|
+
}
|
|
40
|
+
|
|
41
|
+
.msp-sequence-wrapper {
|
|
42
|
+
word-break: break-word;
|
|
43
|
+
// use $control-spacing for top to have space for sequence numebrs
|
|
44
|
+
padding: $control-spacing $control-spacing $info-vertical-padding $control-spacing;
|
|
45
|
+
user-select: none;
|
|
46
|
+
}
|
|
47
|
+
|
|
48
|
+
.msp-sequence-wrapper-non-empty {
|
|
49
|
+
font-size: 85%;
|
|
50
|
+
line-height: 180%;
|
|
51
|
+
font-family: "Courier New", monospace;
|
|
52
|
+
background: $msp-form-control-background;
|
|
53
|
+
|
|
54
|
+
width: 100%;
|
|
55
|
+
overflow-y: auto;
|
|
56
|
+
overflow-x: hidden;
|
|
57
|
+
position: absolute;
|
|
58
|
+
top: $sequence-select-height + 1px;
|
|
59
|
+
left: 0;
|
|
60
|
+
bottom: 0;
|
|
61
|
+
right: 0;
|
|
62
|
+
}
|
|
63
|
+
|
|
64
|
+
.msp-sequence-chain-label {
|
|
65
|
+
margin-left: $control-spacing;
|
|
66
|
+
margin-top: $control-spacing;
|
|
67
|
+
user-select: none;
|
|
68
|
+
color: $sequence-number-color;
|
|
69
|
+
font-size: 90%;
|
|
70
|
+
line-height: 90%;
|
|
71
|
+
padding-left: 0.2em;
|
|
72
|
+
}
|
|
73
|
+
|
|
74
|
+
.msp-sequence-wrapper {
|
|
75
|
+
span {
|
|
76
|
+
cursor: pointer;
|
|
77
|
+
}
|
|
78
|
+
|
|
79
|
+
.msp-sequence-residue-long {
|
|
80
|
+
margin: 0em 0.2em 0em 0.2em;
|
|
81
|
+
}
|
|
82
|
+
|
|
83
|
+
.msp-sequence-residue-long-begin {
|
|
84
|
+
margin: 0em 0.2em 0em 0em;
|
|
85
|
+
}
|
|
86
|
+
|
|
87
|
+
.msp-sequence-label {
|
|
88
|
+
color: $sequence-number-color;
|
|
89
|
+
font-size: 90%;
|
|
90
|
+
line-height: 90%;
|
|
91
|
+
padding-bottom: 1em;
|
|
92
|
+
padding-left: 0.2em;
|
|
93
|
+
}
|
|
94
|
+
|
|
95
|
+
.msp-sequence-number {
|
|
96
|
+
color: $sequence-number-color;
|
|
97
|
+
word-break: keep-all;
|
|
98
|
+
cursor: default;
|
|
99
|
+
position: relative;
|
|
100
|
+
top: -1.1em;
|
|
101
|
+
left: 3.1em;
|
|
102
|
+
padding: 0px;
|
|
103
|
+
margin-left: -3em;
|
|
104
|
+
font-size: 80%;
|
|
105
|
+
}
|
|
106
|
+
|
|
107
|
+
.msp-sequence-number-long {
|
|
108
|
+
left: 3.3em;
|
|
109
|
+
}
|
|
110
|
+
|
|
111
|
+
.msp-sequence-number-long-negative {
|
|
112
|
+
left: 2.7em;
|
|
113
|
+
}
|
|
114
|
+
|
|
115
|
+
.msp-sequence-number-negative {
|
|
116
|
+
left: 2.5em;
|
|
117
|
+
}
|
|
118
|
+
|
|
119
|
+
.msp-sequence-present {
|
|
120
|
+
color: $font-color;
|
|
121
|
+
}
|
|
122
|
+
|
|
123
|
+
.msp-sequence-missing {
|
|
124
|
+
color: color-lower-contrast($font-color, 33%);
|
|
125
|
+
}
|
|
126
126
|
}
|
|
@@ -1,166 +1,166 @@
|
|
|
1
|
-
@mixin borderBox {
|
|
2
|
-
box-sizing: border-box;
|
|
3
|
-
-webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
|
|
4
|
-
|
|
5
|
-
* {
|
|
6
|
-
box-sizing: border-box;
|
|
7
|
-
-webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
|
|
8
|
-
}
|
|
9
|
-
}
|
|
10
|
-
|
|
11
|
-
.msp-slider-base {
|
|
12
|
-
position: relative;
|
|
13
|
-
height: 14px;
|
|
14
|
-
padding: 5px 0;
|
|
15
|
-
width: 100%;
|
|
16
|
-
border-radius: $slider-border-radius-base;
|
|
17
|
-
align-self: center;
|
|
18
|
-
@include borderBox;
|
|
19
|
-
|
|
20
|
-
&-rail {
|
|
21
|
-
position: absolute;
|
|
22
|
-
width: 100%;
|
|
23
|
-
background-color: $control-background;
|
|
24
|
-
height: 4px;
|
|
25
|
-
border-radius: 2px;
|
|
26
|
-
}
|
|
27
|
-
|
|
28
|
-
&-track {
|
|
29
|
-
position: absolute;
|
|
30
|
-
left: 0;
|
|
31
|
-
height: 4px;
|
|
32
|
-
border-radius: $slider-border-radius-base;
|
|
33
|
-
background-color: tint($font-color, 60%);
|
|
34
|
-
}
|
|
35
|
-
|
|
36
|
-
&-handle {
|
|
37
|
-
position: absolute;
|
|
38
|
-
margin-left: -11px;
|
|
39
|
-
margin-top: -9px;
|
|
40
|
-
width: 22px;
|
|
41
|
-
height: 22px;
|
|
42
|
-
cursor: pointer;
|
|
43
|
-
border-radius: 50%;
|
|
44
|
-
background-color: $font-color;
|
|
45
|
-
border: 4px solid $control-background;
|
|
46
|
-
|
|
47
|
-
&:hover {
|
|
48
|
-
background-color: $hover-font-color;
|
|
49
|
-
}
|
|
50
|
-
}
|
|
51
|
-
|
|
52
|
-
&-mark {
|
|
53
|
-
position: absolute;
|
|
54
|
-
top: 18px;
|
|
55
|
-
left: 0;
|
|
56
|
-
width: 100%;
|
|
57
|
-
font-size: 12px;
|
|
58
|
-
}
|
|
59
|
-
|
|
60
|
-
&-mark-text {
|
|
61
|
-
position: absolute;
|
|
62
|
-
display: inline-block;
|
|
63
|
-
vertical-align: middle;
|
|
64
|
-
text-align: center;
|
|
65
|
-
cursor: pointer;
|
|
66
|
-
color: #999;
|
|
67
|
-
|
|
68
|
-
&-active {
|
|
69
|
-
color: #666;
|
|
70
|
-
}
|
|
71
|
-
}
|
|
72
|
-
|
|
73
|
-
&-step {
|
|
74
|
-
position: absolute;
|
|
75
|
-
width: 100%;
|
|
76
|
-
height: 4px;
|
|
77
|
-
background: transparent;
|
|
78
|
-
}
|
|
79
|
-
|
|
80
|
-
&-dot {
|
|
81
|
-
position: absolute;
|
|
82
|
-
bottom: -2px;
|
|
83
|
-
margin-left: -4px;
|
|
84
|
-
width: 8px;
|
|
85
|
-
height: 8px;
|
|
86
|
-
border: 2px solid #e9e9e9;
|
|
87
|
-
background-color: #fff;
|
|
88
|
-
cursor: pointer;
|
|
89
|
-
border-radius: 50%;
|
|
90
|
-
vertical-align: middle;
|
|
91
|
-
&:first-child {
|
|
92
|
-
margin-left: -4px;
|
|
93
|
-
}
|
|
94
|
-
&:last-child {
|
|
95
|
-
margin-left: -4px;
|
|
96
|
-
}
|
|
97
|
-
&-active {
|
|
98
|
-
border-color: tint($font-color, 50%);
|
|
99
|
-
}
|
|
100
|
-
}
|
|
101
|
-
|
|
102
|
-
&-disabled {
|
|
103
|
-
background: $default-background;
|
|
104
|
-
opacity: 0.35;
|
|
105
|
-
|
|
106
|
-
// .msp-slider-base-track {
|
|
107
|
-
// background-color: $slider-disabledColor;
|
|
108
|
-
// }
|
|
109
|
-
|
|
110
|
-
.msp-slider-base-handle, .msp-slider-base-dot {
|
|
111
|
-
// border-color: $slider-disabledColor;
|
|
112
|
-
// background-color: color-lower-contrast($font-color, 10%);
|
|
113
|
-
cursor: not-allowed;
|
|
114
|
-
}
|
|
115
|
-
|
|
116
|
-
.msp-slider-base-mark-text, .msp-slider-base-dot {
|
|
117
|
-
cursor: not-allowed!important;
|
|
118
|
-
}
|
|
119
|
-
}
|
|
120
|
-
}
|
|
121
|
-
|
|
122
|
-
// .msp-slider-base-vertical {
|
|
123
|
-
// width: 14px;
|
|
124
|
-
// height: 100%;
|
|
125
|
-
// padding: 0 5px;
|
|
126
|
-
|
|
127
|
-
// .msp-slider-base {
|
|
128
|
-
// &-rail {
|
|
129
|
-
// height: 100%;
|
|
130
|
-
// width: 4px;
|
|
131
|
-
// }
|
|
132
|
-
|
|
133
|
-
// &-track {
|
|
134
|
-
// left: 5px;
|
|
135
|
-
// bottom: 0;
|
|
136
|
-
// width: 4px;
|
|
137
|
-
// }
|
|
138
|
-
|
|
139
|
-
// &-handle {
|
|
140
|
-
// margin-left: -5px;
|
|
141
|
-
// margin-bottom: -7px;
|
|
142
|
-
// }
|
|
143
|
-
|
|
144
|
-
// &-mark {
|
|
145
|
-
// top: 0;
|
|
146
|
-
// left: 18px;
|
|
147
|
-
// height: 100%;
|
|
148
|
-
// }
|
|
149
|
-
|
|
150
|
-
// &-step {
|
|
151
|
-
// height: 100%;
|
|
152
|
-
// width: 4px;
|
|
153
|
-
// }
|
|
154
|
-
|
|
155
|
-
// &-dot {
|
|
156
|
-
// left: 2px;
|
|
157
|
-
// margin-bottom: -4px;
|
|
158
|
-
// &:first-child {
|
|
159
|
-
// margin-bottom: -4px;
|
|
160
|
-
// }
|
|
161
|
-
// &:last-child {
|
|
162
|
-
// margin-bottom: -4px;
|
|
163
|
-
// }
|
|
164
|
-
// }
|
|
165
|
-
// }
|
|
1
|
+
@mixin borderBox {
|
|
2
|
+
box-sizing: border-box;
|
|
3
|
+
-webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
|
|
4
|
+
|
|
5
|
+
* {
|
|
6
|
+
box-sizing: border-box;
|
|
7
|
+
-webkit-tap-highlight-color: rgba(0, 0, 0, 0); // remove tap highlight color for mobile safari
|
|
8
|
+
}
|
|
9
|
+
}
|
|
10
|
+
|
|
11
|
+
.msp-slider-base {
|
|
12
|
+
position: relative;
|
|
13
|
+
height: 14px;
|
|
14
|
+
padding: 5px 0;
|
|
15
|
+
width: 100%;
|
|
16
|
+
border-radius: $slider-border-radius-base;
|
|
17
|
+
align-self: center;
|
|
18
|
+
@include borderBox;
|
|
19
|
+
|
|
20
|
+
&-rail {
|
|
21
|
+
position: absolute;
|
|
22
|
+
width: 100%;
|
|
23
|
+
background-color: $control-background;
|
|
24
|
+
height: 4px;
|
|
25
|
+
border-radius: 2px;
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
&-track {
|
|
29
|
+
position: absolute;
|
|
30
|
+
left: 0;
|
|
31
|
+
height: 4px;
|
|
32
|
+
border-radius: $slider-border-radius-base;
|
|
33
|
+
background-color: tint($font-color, 60%);
|
|
34
|
+
}
|
|
35
|
+
|
|
36
|
+
&-handle {
|
|
37
|
+
position: absolute;
|
|
38
|
+
margin-left: -11px;
|
|
39
|
+
margin-top: -9px;
|
|
40
|
+
width: 22px;
|
|
41
|
+
height: 22px;
|
|
42
|
+
cursor: pointer;
|
|
43
|
+
border-radius: 50%;
|
|
44
|
+
background-color: $font-color;
|
|
45
|
+
border: 4px solid $control-background;
|
|
46
|
+
|
|
47
|
+
&:hover {
|
|
48
|
+
background-color: $hover-font-color;
|
|
49
|
+
}
|
|
50
|
+
}
|
|
51
|
+
|
|
52
|
+
&-mark {
|
|
53
|
+
position: absolute;
|
|
54
|
+
top: 18px;
|
|
55
|
+
left: 0;
|
|
56
|
+
width: 100%;
|
|
57
|
+
font-size: 12px;
|
|
58
|
+
}
|
|
59
|
+
|
|
60
|
+
&-mark-text {
|
|
61
|
+
position: absolute;
|
|
62
|
+
display: inline-block;
|
|
63
|
+
vertical-align: middle;
|
|
64
|
+
text-align: center;
|
|
65
|
+
cursor: pointer;
|
|
66
|
+
color: #999;
|
|
67
|
+
|
|
68
|
+
&-active {
|
|
69
|
+
color: #666;
|
|
70
|
+
}
|
|
71
|
+
}
|
|
72
|
+
|
|
73
|
+
&-step {
|
|
74
|
+
position: absolute;
|
|
75
|
+
width: 100%;
|
|
76
|
+
height: 4px;
|
|
77
|
+
background: transparent;
|
|
78
|
+
}
|
|
79
|
+
|
|
80
|
+
&-dot {
|
|
81
|
+
position: absolute;
|
|
82
|
+
bottom: -2px;
|
|
83
|
+
margin-left: -4px;
|
|
84
|
+
width: 8px;
|
|
85
|
+
height: 8px;
|
|
86
|
+
border: 2px solid #e9e9e9;
|
|
87
|
+
background-color: #fff;
|
|
88
|
+
cursor: pointer;
|
|
89
|
+
border-radius: 50%;
|
|
90
|
+
vertical-align: middle;
|
|
91
|
+
&:first-child {
|
|
92
|
+
margin-left: -4px;
|
|
93
|
+
}
|
|
94
|
+
&:last-child {
|
|
95
|
+
margin-left: -4px;
|
|
96
|
+
}
|
|
97
|
+
&-active {
|
|
98
|
+
border-color: tint($font-color, 50%);
|
|
99
|
+
}
|
|
100
|
+
}
|
|
101
|
+
|
|
102
|
+
&-disabled {
|
|
103
|
+
background: $default-background;
|
|
104
|
+
opacity: 0.35;
|
|
105
|
+
|
|
106
|
+
// .msp-slider-base-track {
|
|
107
|
+
// background-color: $slider-disabledColor;
|
|
108
|
+
// }
|
|
109
|
+
|
|
110
|
+
.msp-slider-base-handle, .msp-slider-base-dot {
|
|
111
|
+
// border-color: $slider-disabledColor;
|
|
112
|
+
// background-color: color-lower-contrast($font-color, 10%);
|
|
113
|
+
cursor: not-allowed;
|
|
114
|
+
}
|
|
115
|
+
|
|
116
|
+
.msp-slider-base-mark-text, .msp-slider-base-dot {
|
|
117
|
+
cursor: not-allowed!important;
|
|
118
|
+
}
|
|
119
|
+
}
|
|
120
|
+
}
|
|
121
|
+
|
|
122
|
+
// .msp-slider-base-vertical {
|
|
123
|
+
// width: 14px;
|
|
124
|
+
// height: 100%;
|
|
125
|
+
// padding: 0 5px;
|
|
126
|
+
|
|
127
|
+
// .msp-slider-base {
|
|
128
|
+
// &-rail {
|
|
129
|
+
// height: 100%;
|
|
130
|
+
// width: 4px;
|
|
131
|
+
// }
|
|
132
|
+
|
|
133
|
+
// &-track {
|
|
134
|
+
// left: 5px;
|
|
135
|
+
// bottom: 0;
|
|
136
|
+
// width: 4px;
|
|
137
|
+
// }
|
|
138
|
+
|
|
139
|
+
// &-handle {
|
|
140
|
+
// margin-left: -5px;
|
|
141
|
+
// margin-bottom: -7px;
|
|
142
|
+
// }
|
|
143
|
+
|
|
144
|
+
// &-mark {
|
|
145
|
+
// top: 0;
|
|
146
|
+
// left: 18px;
|
|
147
|
+
// height: 100%;
|
|
148
|
+
// }
|
|
149
|
+
|
|
150
|
+
// &-step {
|
|
151
|
+
// height: 100%;
|
|
152
|
+
// width: 4px;
|
|
153
|
+
// }
|
|
154
|
+
|
|
155
|
+
// &-dot {
|
|
156
|
+
// left: 2px;
|
|
157
|
+
// margin-bottom: -4px;
|
|
158
|
+
// &:first-child {
|
|
159
|
+
// margin-bottom: -4px;
|
|
160
|
+
// }
|
|
161
|
+
// &:last-child {
|
|
162
|
+
// margin-bottom: -4px;
|
|
163
|
+
// }
|
|
164
|
+
// }
|
|
165
|
+
// }
|
|
166
166
|
// }
|