molstar 3.26.0 → 3.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (499) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +115 -115
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +2 -0
  9. package/lib/apps/docking-viewer/viewport.js +1 -0
  10. package/lib/apps/viewer/app.d.ts +3 -1
  11. package/lib/apps/viewer/app.js +4 -0
  12. package/lib/apps/viewer/embedded.html +52 -52
  13. package/lib/apps/viewer/index.html +115 -115
  14. package/lib/cli/structure-info/volume.js +1 -1
  15. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -0
  16. package/lib/commonjs/apps/docking-viewer/viewport.js +1 -0
  17. package/lib/commonjs/apps/viewer/app.d.ts +3 -1
  18. package/lib/commonjs/apps/viewer/app.js +4 -0
  19. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  20. package/lib/commonjs/examples/lighting/index.js +1 -1
  21. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  22. package/lib/commonjs/extensions/cellpack/model.js +2 -1
  23. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  24. package/lib/commonjs/extensions/meshes/choice.d.ts +26 -0
  25. package/lib/commonjs/extensions/meshes/choice.js +31 -0
  26. package/lib/commonjs/extensions/meshes/examples.d.ts +26 -0
  27. package/lib/commonjs/extensions/meshes/examples.js +337 -0
  28. package/lib/commonjs/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  29. package/lib/commonjs/extensions/meshes/mesh-cif-schema.js +34 -0
  30. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +66 -0
  31. package/lib/commonjs/extensions/meshes/mesh-extension.js +221 -0
  32. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  33. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.js +379 -0
  34. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  35. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.js +30 -0
  36. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  37. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.js +273 -0
  38. package/lib/commonjs/extensions/meshes/mesh-utils.d.ts +41 -0
  39. package/lib/commonjs/extensions/meshes/mesh-utils.js +357 -0
  40. package/lib/commonjs/extensions/meshes/metadata.d.ts +108 -0
  41. package/lib/commonjs/extensions/meshes/metadata.js +72 -0
  42. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  43. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  44. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +16 -4
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  46. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  47. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  48. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.js +156 -0
  49. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  50. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.js +96 -0
  51. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
  52. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +576 -0
  53. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
  54. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.js +200 -0
  55. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
  56. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.js +32 -0
  57. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
  58. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.js +234 -0
  59. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
  60. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +85 -0
  61. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
  62. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.js +83 -0
  63. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
  64. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +171 -0
  65. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +20 -0
  66. package/lib/commonjs/extensions/volumes-and-segmentations/index.js +130 -0
  67. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
  68. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.js +85 -0
  69. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +29 -0
  70. package/lib/commonjs/extensions/volumes-and-segmentations/ui.js +232 -0
  71. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
  72. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.js +83 -0
  73. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.d.ts +92 -0
  74. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.js +7 -0
  75. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.d.ts +23 -0
  76. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.js +78 -0
  77. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  78. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  79. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  80. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -1
  81. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +27 -13
  82. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  83. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
  84. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  85. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  86. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  87. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
  88. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
  89. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +4 -6
  90. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
  91. package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
  92. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -0
  93. package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
  94. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  95. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  96. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.d.ts +1 -1
  97. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +1 -1
  98. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +1 -1
  99. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +1 -1
  100. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +2 -2
  101. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +2 -2
  102. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  103. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  104. package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
  105. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
  106. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  107. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  108. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +1 -1
  109. package/lib/commonjs/mol-gl/shader/outlines.frag.js +1 -1
  110. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  111. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  112. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  113. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  114. package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
  115. package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
  116. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +1 -1
  117. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +15 -0
  118. package/lib/commonjs/mol-gl/webgl/state.d.ts +12 -0
  119. package/lib/commonjs/mol-gl/webgl/state.js +136 -0
  120. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.d.ts +38 -0
  121. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.js +22 -0
  122. package/lib/commonjs/mol-io/reader/cif.d.ts +3 -1
  123. package/lib/commonjs/mol-io/reader/cif.js +3 -1
  124. package/lib/commonjs/mol-model/location.d.ts +2 -1
  125. package/lib/commonjs/mol-model/loci.d.ts +11 -11
  126. package/lib/commonjs/mol-model/loci.js +13 -1
  127. package/lib/commonjs/mol-model/sequence/alignment/sequence.d.ts +4 -1
  128. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +4 -1
  129. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -0
  130. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +8 -0
  131. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +21 -5
  132. package/lib/commonjs/mol-model/structure/structure/util/superposition.d.ts +1 -0
  133. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +2 -1
  134. package/lib/commonjs/mol-model/volume/volume.d.ts +35 -2
  135. package/lib/commonjs/mol-model/volume/volume.js +77 -2
  136. package/lib/commonjs/mol-model-formats/volume/segmentation.d.ts +23 -0
  137. package/lib/commonjs/mol-model-formats/volume/segmentation.js +138 -0
  138. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  139. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
  140. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +2 -1
  141. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  142. package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
  143. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +4 -1
  144. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
  145. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
  146. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +13 -4
  147. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +6 -1
  148. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -0
  149. package/lib/commonjs/mol-plugin-state/formats/provider.d.ts +2 -2
  150. package/lib/commonjs/mol-plugin-state/formats/provider.js +11 -3
  151. package/lib/commonjs/mol-plugin-state/formats/registry.js +6 -5
  152. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +27 -0
  153. package/lib/commonjs/mol-plugin-state/formats/volume.js +65 -1
  154. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
  155. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +18 -13
  156. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -2
  157. package/lib/commonjs/mol-plugin-state/transforms/representation.js +5 -6
  158. package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +11 -1
  159. package/lib/commonjs/mol-plugin-state/transforms/volume.js +55 -2
  160. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +1 -0
  161. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +33 -13
  162. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -0
  163. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +22 -5
  164. package/lib/commonjs/mol-plugin-ui/sequence/sequence.d.ts +25 -17
  165. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +19 -1
  166. package/lib/commonjs/mol-plugin-ui/sequence.js +8 -1
  167. package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -10
  168. package/lib/commonjs/mol-plugin-ui/state/apply-action.js +2 -2
  169. package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +2 -2
  170. package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +1 -1
  171. package/lib/commonjs/mol-plugin-ui/structure/volume.d.ts +1 -1
  172. package/lib/commonjs/mol-plugin-ui/structure/volume.js +3 -2
  173. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -0
  174. package/lib/commonjs/mol-repr/structure/params.d.ts +2 -0
  175. package/lib/commonjs/mol-repr/structure/registry.d.ts +12 -0
  176. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
  177. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -0
  178. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -0
  179. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  180. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  181. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
  182. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  183. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
  184. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +6 -0
  185. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +2 -0
  186. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -0
  187. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -0
  188. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  189. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +1 -0
  190. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -0
  191. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -0
  192. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  193. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +1 -0
  194. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
  195. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +2 -1
  196. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
  197. package/lib/commonjs/mol-repr/structure/visual/element-point.js +2 -1
  198. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  199. package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +3 -1
  200. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  201. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +6 -2
  202. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  203. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -1
  204. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  205. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -1
  206. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  207. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +4 -0
  208. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  209. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +2 -0
  210. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  211. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  212. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -0
  213. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +18 -7
  214. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +4 -1
  215. package/lib/commonjs/mol-repr/structure/visual/util/common.js +10 -6
  216. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +1 -0
  217. package/lib/commonjs/mol-repr/structure/visual/util/element.js +2 -3
  218. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +2 -0
  219. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +4 -4
  220. package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -6
  221. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +4 -4
  222. package/lib/commonjs/mol-repr/volume/isosurface.js +17 -16
  223. package/lib/commonjs/mol-repr/volume/registry.d.ts +54 -1
  224. package/lib/commonjs/mol-repr/volume/registry.js +3 -1
  225. package/lib/commonjs/mol-repr/volume/representation.d.ts +11 -7
  226. package/lib/commonjs/mol-repr/volume/representation.js +142 -47
  227. package/lib/commonjs/mol-repr/volume/segment.d.ts +291 -0
  228. package/lib/commonjs/mol-repr/volume/segment.js +289 -0
  229. package/lib/commonjs/mol-repr/volume/slice.d.ts +2 -2
  230. package/lib/commonjs/mol-repr/volume/slice.js +5 -5
  231. package/lib/commonjs/mol-repr/volume/util.d.ts +12 -3
  232. package/lib/commonjs/mol-repr/volume/util.js +72 -6
  233. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  234. package/lib/commonjs/mol-theme/color/volume-segment.d.ts +41 -0
  235. package/lib/commonjs/mol-theme/color/volume-segment.js +58 -0
  236. package/lib/commonjs/mol-theme/color/volume-value.js +2 -1
  237. package/lib/commonjs/mol-theme/color.d.ts +15 -0
  238. package/lib/commonjs/mol-theme/color.js +2 -0
  239. package/lib/commonjs/mol-theme/label.d.ts +1 -1
  240. package/lib/commonjs/mol-theme/label.js +13 -1
  241. package/lib/commonjs/mol-util/param-definition.d.ts +4 -1
  242. package/lib/commonjs/mol-util/param-definition.js +5 -2
  243. package/lib/examples/alpha-orbitals/index.html +72 -72
  244. package/lib/examples/basic-wrapper/index.html +137 -137
  245. package/lib/examples/lighting/index.html +88 -88
  246. package/lib/examples/lighting/index.js +1 -1
  247. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  248. package/lib/extensions/anvil/behavior.d.ts +1 -0
  249. package/lib/extensions/cellpack/model.js +2 -1
  250. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  251. package/lib/extensions/meshes/choice.d.ts +26 -0
  252. package/lib/extensions/meshes/choice.js +28 -0
  253. package/lib/extensions/meshes/examples.d.ts +26 -0
  254. package/lib/extensions/meshes/examples.js +325 -0
  255. package/lib/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  256. package/lib/extensions/meshes/mesh-cif-schema.js +30 -0
  257. package/lib/extensions/meshes/mesh-extension.d.ts +66 -0
  258. package/lib/extensions/meshes/mesh-extension.js +218 -0
  259. package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  260. package/lib/extensions/meshes/mesh-streaming/behavior.js +375 -0
  261. package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  262. package/lib/extensions/meshes/mesh-streaming/server-info.js +26 -0
  263. package/lib/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  264. package/lib/extensions/meshes/mesh-streaming/transformers.js +270 -0
  265. package/lib/extensions/meshes/mesh-utils.d.ts +41 -0
  266. package/lib/extensions/meshes/mesh-utils.js +346 -0
  267. package/lib/extensions/meshes/metadata.d.ts +108 -0
  268. package/lib/extensions/meshes/metadata.js +69 -0
  269. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  270. package/lib/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  271. package/lib/extensions/model-archive/quality-assessment/prop.js +16 -4
  272. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  273. package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  274. package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  275. package/lib/extensions/volumes-and-segmentations/entry-meshes.js +153 -0
  276. package/lib/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  277. package/lib/extensions/volumes-and-segmentations/entry-models.js +93 -0
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+
41
+ .msp-viewport-controls {
42
+ position: absolute;
43
+ right: $control-spacing;
44
+ top: $control-spacing;
45
+ width: 32px;
46
+ }
47
+
48
+ .msp-viewport-controls-buttons {
49
+ text-align: right;
50
+ position: relative;
51
+ // opacity: 0.5;
52
+ // &:hover { opacity: 1.0; }
53
+
54
+ > div {
55
+ position: relative;
56
+ margin-bottom: 4px;
57
+ }
58
+
59
+ button {
60
+ padding: 0;
61
+ text-align: center;
62
+ width: $row-height;
63
+ position: relative;
64
+ }
65
+
66
+ .msp-btn-link-toggle-off {
67
+ color: $msp-btn-link-toggle-off-font-color;
68
+ }
69
+
70
+ .msp-btn-link:hover {
71
+ color: $hover-font-color;
72
+ }
73
+ }
74
+
75
+ .msp-semi-transparent-background {
76
+ background: $default-background;
77
+ opacity: 0.5;
78
+ position: absolute;
79
+ top: 0;
80
+ left: 0;
81
+ width: 100%;
82
+ height: 100%;
83
+ }
84
+
85
+ .msp-viewport-controls-panel {
86
+ width: 290px;
87
+ top: 0;
88
+ right: $row-height + 4px;
89
+ position: absolute;
90
+ background: $control-background;
91
+
92
+ .msp-control-group-wrapper:first-child {
93
+ padding-top: 0;
94
+ }
95
+
96
+ .msp-viewport-controls-panel-controls {
97
+ overflow-y: auto;
98
+ max-height: 400px;
99
+ }
100
+ }
101
+
102
+ /* highlight & toasts */
103
+
104
+ .msp-highlight-toast-wrapper {
105
+ position: absolute;
106
+ right: $control-spacing;
107
+ bottom: $control-spacing;
108
+ max-width: 95%;
109
+
110
+ z-index: 10000;
111
+ }
112
+
113
+ .msp-highlight-info {
114
+ color: $highlight-info-font-color;
115
+ padding: $info-vertical-padding $control-spacing;
116
+ background: $default-background; //$highlight-info-background;
117
+ opacity: 90%;
118
+
119
+ // min-height: $row-height;
120
+ text-align: right;
121
+
122
+ @include non-selectable;
123
+ }
124
+
125
+ .msp-highlight-info-hr {
126
+ margin-inline: 0px;
127
+ margin-block: 3px;
128
+ border: none;
129
+ height: 1px;
130
+ background-color: $highlight-info-font-color;
131
+ }
132
+
133
+ .msp-highlight-info-additional {
134
+ font-size: 85%;
135
+ display: inline-block;
136
+ color: $highlight-info-additional-font-color;
137
+ }
@@ -1,72 +1,72 @@
1
-
2
-
3
- .msp-layout-expanded, .msp-layout-standard {
4
- left: 0;
5
- right: 0;
6
- top: 0;
7
- bottom: 0;
8
- }
9
-
10
- .msp-layout-standard {
11
- border: 1px solid $border-color;
12
- }
13
-
14
- .msp-layout-region {
15
- overflow: hidden;
16
- }
17
-
18
- .msp-layout-static, .msp-layout-scrollable {
19
- position: absolute;
20
- }
21
-
22
- .msp-scrollable {
23
- overflow-y: auto;
24
- }
25
-
26
- .msp-scrollable-container {
27
- position: absolute;
28
- left: 0;
29
- right: 0;
30
- top: 0;
31
- bottom: 0;
32
- overflow-y: auto;
33
- }
34
-
35
- .msp-layout-static {
36
- overflow: hidden;
37
- }
38
-
39
- .msp-layout-top, .msp-layout-main, .msp-layout-bottom {
40
- .msp-layout-static {
41
- left: 0;
42
- right: 0;
43
- top: 0;
44
- bottom: 0;
45
- }
46
- }
47
-
48
- .msp-layout-right {
49
- .msp-layout-static {
50
- left: 0;
51
- right: 0;
52
- top: 0;
53
- bottom: 0; // height: $row-height + $control-spacing;
54
- }
55
-
56
- .msp-layout-scrollable {
57
- left: 0;
58
- right: 0;
59
- top: $row-height + $control-spacing + 1;
60
- bottom: 0;
61
- }
62
-
63
- }
64
-
65
- .msp-layout-left {
66
- .msp-layout-static {
67
- left: 0;
68
- right: 0;
69
- bottom: 0;
70
- top: 0;
71
- }
1
+
2
+
3
+ .msp-layout-expanded, .msp-layout-standard {
4
+ left: 0;
5
+ right: 0;
6
+ top: 0;
7
+ bottom: 0;
8
+ }
9
+
10
+ .msp-layout-standard {
11
+ border: 1px solid $border-color;
12
+ }
13
+
14
+ .msp-layout-region {
15
+ overflow: hidden;
16
+ }
17
+
18
+ .msp-layout-static, .msp-layout-scrollable {
19
+ position: absolute;
20
+ }
21
+
22
+ .msp-scrollable {
23
+ overflow-y: auto;
24
+ }
25
+
26
+ .msp-scrollable-container {
27
+ position: absolute;
28
+ left: 0;
29
+ right: 0;
30
+ top: 0;
31
+ bottom: 0;
32
+ overflow-y: auto;
33
+ }
34
+
35
+ .msp-layout-static {
36
+ overflow: hidden;
37
+ }
38
+
39
+ .msp-layout-top, .msp-layout-main, .msp-layout-bottom {
40
+ .msp-layout-static {
41
+ left: 0;
42
+ right: 0;
43
+ top: 0;
44
+ bottom: 0;
45
+ }
46
+ }
47
+
48
+ .msp-layout-right {
49
+ .msp-layout-static {
50
+ left: 0;
51
+ right: 0;
52
+ top: 0;
53
+ bottom: 0; // height: $row-height + $control-spacing;
54
+ }
55
+
56
+ .msp-layout-scrollable {
57
+ left: 0;
58
+ right: 0;
59
+ top: $row-height + $control-spacing + 1;
60
+ bottom: 0;
61
+ }
62
+
63
+ }
64
+
65
+ .msp-layout-left {
66
+ .msp-layout-static {
67
+ left: 0;
68
+ right: 0;
69
+ bottom: 0;
70
+ top: 0;
71
+ }
72
72
  }
@@ -1,90 +1,90 @@
1
- 
2
- .msp-layout-main {
3
- position: absolute;
4
- left: $expanded-left-width;
5
- right: $expanded-right-width;
6
- bottom: $expanded-bottom-height;
7
- top: $expanded-top-height;
8
- }
9
-
10
- .msp-layout-top {
11
- position: absolute;
12
- left: $expanded-left-width;
13
- right: $expanded-right-width;
14
- height: $expanded-top-height;
15
- top: 0;
16
- border-bottom: 1px solid $border-color;
17
- }
18
-
19
- .msp-layout-bottom {
20
- position: absolute;
21
- left: $expanded-left-width;
22
- right: $expanded-right-width;
23
- height: $expanded-bottom-height;
24
- bottom: 0;
25
- border-top: 1px solid $border-color;
26
- }
27
-
28
- .msp-layout-right {
29
- position: absolute;
30
- width: $expanded-right-width;
31
- right: 0;
32
- bottom: 0;
33
- top: 0;
34
- border-left: 1px solid $border-color;
35
- }
36
-
37
- .msp-layout-left {
38
- position: absolute;
39
- width: $expanded-left-width;
40
- left: 0;
41
- bottom: 0;
42
- top: 0;
43
- border-right: 1px solid $border-color;
44
- }
45
-
46
- .msp-layout-hide-right {
47
- .msp-layout-right {
48
- display: none;
49
- }
50
- .msp-layout-main, .msp-layout-top, .msp-layout-bottom {
51
- right: 0;
52
- }
53
- }
54
-
55
-
56
- .msp-layout-hide-left {
57
- .msp-layout-left {
58
- display: none;
59
- }
60
- .msp-layout-main, .msp-layout-top, .msp-layout-bottom {
61
- left: 0;
62
- }
63
- }
64
-
65
- .msp-layout-collapse-left {
66
- .msp-layout-left {
67
- width: $collapsed-left-width;
68
- }
69
- .msp-layout-main, .msp-layout-top, .msp-layout-bottom {
70
- left: $collapsed-left-width;
71
- }
72
- }
73
-
74
- .msp-layout-hide-bottom {
75
- .msp-layout-bottom {
76
- display: none;
77
- }
78
- .msp-layout-main {
79
- bottom: 0;
80
- }
81
- }
82
-
83
- .msp-layout-hide-top {
84
- .msp-layout-top {
85
- display: none;
86
- }
87
- .msp-layout-main {
88
- top: 0;
89
- }
1
+ 
2
+ .msp-layout-main {
3
+ position: absolute;
4
+ left: $expanded-left-width;
5
+ right: $expanded-right-width;
6
+ bottom: $expanded-bottom-height;
7
+ top: $expanded-top-height;
8
+ }
9
+
10
+ .msp-layout-top {
11
+ position: absolute;
12
+ left: $expanded-left-width;
13
+ right: $expanded-right-width;
14
+ height: $expanded-top-height;
15
+ top: 0;
16
+ border-bottom: 1px solid $border-color;
17
+ }
18
+
19
+ .msp-layout-bottom {
20
+ position: absolute;
21
+ left: $expanded-left-width;
22
+ right: $expanded-right-width;
23
+ height: $expanded-bottom-height;
24
+ bottom: 0;
25
+ border-top: 1px solid $border-color;
26
+ }
27
+
28
+ .msp-layout-right {
29
+ position: absolute;
30
+ width: $expanded-right-width;
31
+ right: 0;
32
+ bottom: 0;
33
+ top: 0;
34
+ border-left: 1px solid $border-color;
35
+ }
36
+
37
+ .msp-layout-left {
38
+ position: absolute;
39
+ width: $expanded-left-width;
40
+ left: 0;
41
+ bottom: 0;
42
+ top: 0;
43
+ border-right: 1px solid $border-color;
44
+ }
45
+
46
+ .msp-layout-hide-right {
47
+ .msp-layout-right {
48
+ display: none;
49
+ }
50
+ .msp-layout-main, .msp-layout-top, .msp-layout-bottom {
51
+ right: 0;
52
+ }
53
+ }
54
+
55
+
56
+ .msp-layout-hide-left {
57
+ .msp-layout-left {
58
+ display: none;
59
+ }
60
+ .msp-layout-main, .msp-layout-top, .msp-layout-bottom {
61
+ left: 0;
62
+ }
63
+ }
64
+
65
+ .msp-layout-collapse-left {
66
+ .msp-layout-left {
67
+ width: $collapsed-left-width;
68
+ }
69
+ .msp-layout-main, .msp-layout-top, .msp-layout-bottom {
70
+ left: $collapsed-left-width;
71
+ }
72
+ }
73
+
74
+ .msp-layout-hide-bottom {
75
+ .msp-layout-bottom {
76
+ display: none;
77
+ }
78
+ .msp-layout-main {
79
+ bottom: 0;
80
+ }
81
+ }
82
+
83
+ .msp-layout-hide-top {
84
+ .msp-layout-top {
85
+ display: none;
86
+ }
87
+ .msp-layout-main {
88
+ top: 0;
89
+ }
90
90
  }