molstar 3.26.0 → 3.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (499) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +202 -202
  3. package/build/viewer/embedded.html +52 -52
  4. package/build/viewer/index.html +115 -115
  5. package/build/viewer/molstar.css +1 -1
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/viewport.d.ts +2 -0
  9. package/lib/apps/docking-viewer/viewport.js +1 -0
  10. package/lib/apps/viewer/app.d.ts +3 -1
  11. package/lib/apps/viewer/app.js +4 -0
  12. package/lib/apps/viewer/embedded.html +52 -52
  13. package/lib/apps/viewer/index.html +115 -115
  14. package/lib/cli/structure-info/volume.js +1 -1
  15. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -0
  16. package/lib/commonjs/apps/docking-viewer/viewport.js +1 -0
  17. package/lib/commonjs/apps/viewer/app.d.ts +3 -1
  18. package/lib/commonjs/apps/viewer/app.js +4 -0
  19. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  20. package/lib/commonjs/examples/lighting/index.js +1 -1
  21. package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
  22. package/lib/commonjs/extensions/cellpack/model.js +2 -1
  23. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  24. package/lib/commonjs/extensions/meshes/choice.d.ts +26 -0
  25. package/lib/commonjs/extensions/meshes/choice.js +31 -0
  26. package/lib/commonjs/extensions/meshes/examples.d.ts +26 -0
  27. package/lib/commonjs/extensions/meshes/examples.js +337 -0
  28. package/lib/commonjs/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  29. package/lib/commonjs/extensions/meshes/mesh-cif-schema.js +34 -0
  30. package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +66 -0
  31. package/lib/commonjs/extensions/meshes/mesh-extension.js +221 -0
  32. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  33. package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.js +379 -0
  34. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  35. package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.js +30 -0
  36. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  37. package/lib/commonjs/extensions/meshes/mesh-streaming/transformers.js +273 -0
  38. package/lib/commonjs/extensions/meshes/mesh-utils.d.ts +41 -0
  39. package/lib/commonjs/extensions/meshes/mesh-utils.js +357 -0
  40. package/lib/commonjs/extensions/meshes/metadata.d.ts +108 -0
  41. package/lib/commonjs/extensions/meshes/metadata.js +72 -0
  42. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  43. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  44. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +16 -4
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  46. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  47. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  48. package/lib/commonjs/extensions/volumes-and-segmentations/entry-meshes.js +156 -0
  49. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  50. package/lib/commonjs/extensions/volumes-and-segmentations/entry-models.js +96 -0
  51. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
  52. package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +576 -0
  53. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
  54. package/lib/commonjs/extensions/volumes-and-segmentations/entry-segmentation.js +200 -0
  55. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
  56. package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.js +32 -0
  57. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
  58. package/lib/commonjs/extensions/volumes-and-segmentations/entry-volume.js +234 -0
  59. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
  60. package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +85 -0
  61. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
  62. package/lib/commonjs/extensions/volumes-and-segmentations/global-state.js +83 -0
  63. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
  64. package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +171 -0
  65. package/lib/commonjs/extensions/volumes-and-segmentations/index.d.ts +20 -0
  66. package/lib/commonjs/extensions/volumes-and-segmentations/index.js +130 -0
  67. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
  68. package/lib/commonjs/extensions/volumes-and-segmentations/transformers.js +85 -0
  69. package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +29 -0
  70. package/lib/commonjs/extensions/volumes-and-segmentations/ui.js +232 -0
  71. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
  72. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/api.js +83 -0
  73. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.d.ts +92 -0
  74. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/data.js +7 -0
  75. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.d.ts +23 -0
  76. package/lib/commonjs/extensions/volumes-and-segmentations/volseg-api/utils.js +78 -0
  77. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +2 -0
  78. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -3
  79. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  80. package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +2 -1
  81. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +27 -13
  82. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  83. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -2
  84. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +0 -1
  85. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
  86. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  87. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -2
  88. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
  89. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +4 -6
  90. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
  91. package/lib/commonjs/mol-gl/renderable/cylinders.js +1 -1
  92. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +1 -0
  93. package/lib/commonjs/mol-gl/renderable/spheres.js +1 -1
  94. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  95. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  96. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.d.ts +1 -1
  97. package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +1 -1
  98. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +1 -1
  99. package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +1 -1
  100. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +2 -2
  101. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +2 -2
  102. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  103. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  104. package/lib/commonjs/mol-gl/shader/cylinders.vert.d.ts +2 -2
  105. package/lib/commonjs/mol-gl/shader/cylinders.vert.js +2 -2
  106. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  107. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  108. package/lib/commonjs/mol-gl/shader/outlines.frag.d.ts +1 -1
  109. package/lib/commonjs/mol-gl/shader/outlines.frag.js +1 -1
  110. package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  111. package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +1 -1
  112. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  113. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  114. package/lib/commonjs/mol-gl/shader/spheres.vert.d.ts +2 -2
  115. package/lib/commonjs/mol-gl/shader/spheres.vert.js +2 -2
  116. package/lib/commonjs/mol-gl/webgl/renderbuffer.d.ts +1 -1
  117. package/lib/commonjs/mol-gl/webgl/renderbuffer.js +15 -0
  118. package/lib/commonjs/mol-gl/webgl/state.d.ts +12 -0
  119. package/lib/commonjs/mol-gl/webgl/state.js +136 -0
  120. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.d.ts +38 -0
  121. package/lib/commonjs/mol-io/reader/cif/schema/segmentation.js +22 -0
  122. package/lib/commonjs/mol-io/reader/cif.d.ts +3 -1
  123. package/lib/commonjs/mol-io/reader/cif.js +3 -1
  124. package/lib/commonjs/mol-model/location.d.ts +2 -1
  125. package/lib/commonjs/mol-model/loci.d.ts +11 -11
  126. package/lib/commonjs/mol-model/loci.js +13 -1
  127. package/lib/commonjs/mol-model/sequence/alignment/sequence.d.ts +4 -1
  128. package/lib/commonjs/mol-model/sequence/alignment/sequence.js +4 -1
  129. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -0
  130. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +8 -0
  131. package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +21 -5
  132. package/lib/commonjs/mol-model/structure/structure/util/superposition.d.ts +1 -0
  133. package/lib/commonjs/mol-model/structure/structure/util/superposition.js +2 -1
  134. package/lib/commonjs/mol-model/volume/volume.d.ts +35 -2
  135. package/lib/commonjs/mol-model/volume/volume.js +77 -2
  136. package/lib/commonjs/mol-model-formats/volume/segmentation.d.ts +23 -0
  137. package/lib/commonjs/mol-model-formats/volume/segmentation.js +138 -0
  138. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  139. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
  140. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +2 -1
  141. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  142. package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
  143. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +4 -1
  144. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
  145. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
  146. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +13 -4
  147. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +6 -1
  148. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -0
  149. package/lib/commonjs/mol-plugin-state/formats/provider.d.ts +2 -2
  150. package/lib/commonjs/mol-plugin-state/formats/provider.js +11 -3
  151. package/lib/commonjs/mol-plugin-state/formats/registry.js +6 -5
  152. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +27 -0
  153. package/lib/commonjs/mol-plugin-state/formats/volume.js +65 -1
  154. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +1 -1
  155. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +18 -13
  156. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +1 -2
  157. package/lib/commonjs/mol-plugin-state/transforms/representation.js +5 -6
  158. package/lib/commonjs/mol-plugin-state/transforms/volume.d.ts +11 -1
  159. package/lib/commonjs/mol-plugin-state/transforms/volume.js +55 -2
  160. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +1 -0
  161. package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +33 -13
  162. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +1 -0
  163. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +22 -5
  164. package/lib/commonjs/mol-plugin-ui/sequence/sequence.d.ts +25 -17
  165. package/lib/commonjs/mol-plugin-ui/sequence.d.ts +19 -1
  166. package/lib/commonjs/mol-plugin-ui/sequence.js +8 -1
  167. package/lib/commonjs/mol-plugin-ui/state/apply-action.d.ts +2 -10
  168. package/lib/commonjs/mol-plugin-ui/state/apply-action.js +2 -2
  169. package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +2 -2
  170. package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +1 -1
  171. package/lib/commonjs/mol-plugin-ui/structure/volume.d.ts +1 -1
  172. package/lib/commonjs/mol-plugin-ui/structure/volume.js +3 -2
  173. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +1 -0
  174. package/lib/commonjs/mol-repr/structure/params.d.ts +2 -0
  175. package/lib/commonjs/mol-repr/structure/registry.d.ts +12 -0
  176. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +3 -0
  177. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +6 -0
  178. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +6 -0
  179. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  180. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  181. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +3 -0
  182. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  183. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +3 -0
  184. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +6 -0
  185. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +2 -0
  186. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -0
  187. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -0
  188. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  189. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +1 -0
  190. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -0
  191. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -0
  192. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  193. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +1 -0
  194. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +1 -0
  195. package/lib/commonjs/mol-repr/structure/visual/element-cross.js +2 -1
  196. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +1 -0
  197. package/lib/commonjs/mol-repr/structure/visual/element-point.js +2 -1
  198. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  199. package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +3 -1
  200. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  201. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +6 -2
  202. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  203. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -1
  204. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  205. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -1
  206. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  207. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +4 -0
  208. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  209. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +2 -0
  210. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  211. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  212. package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +7 -0
  213. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +18 -7
  214. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +4 -1
  215. package/lib/commonjs/mol-repr/structure/visual/util/common.js +10 -6
  216. package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +1 -0
  217. package/lib/commonjs/mol-repr/structure/visual/util/element.js +2 -3
  218. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +2 -0
  219. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +4 -4
  220. package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -6
  221. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +4 -4
  222. package/lib/commonjs/mol-repr/volume/isosurface.js +17 -16
  223. package/lib/commonjs/mol-repr/volume/registry.d.ts +54 -1
  224. package/lib/commonjs/mol-repr/volume/registry.js +3 -1
  225. package/lib/commonjs/mol-repr/volume/representation.d.ts +11 -7
  226. package/lib/commonjs/mol-repr/volume/representation.js +142 -47
  227. package/lib/commonjs/mol-repr/volume/segment.d.ts +291 -0
  228. package/lib/commonjs/mol-repr/volume/segment.js +289 -0
  229. package/lib/commonjs/mol-repr/volume/slice.d.ts +2 -2
  230. package/lib/commonjs/mol-repr/volume/slice.js +5 -5
  231. package/lib/commonjs/mol-repr/volume/util.d.ts +12 -3
  232. package/lib/commonjs/mol-repr/volume/util.js +72 -6
  233. package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
  234. package/lib/commonjs/mol-theme/color/volume-segment.d.ts +41 -0
  235. package/lib/commonjs/mol-theme/color/volume-segment.js +58 -0
  236. package/lib/commonjs/mol-theme/color/volume-value.js +2 -1
  237. package/lib/commonjs/mol-theme/color.d.ts +15 -0
  238. package/lib/commonjs/mol-theme/color.js +2 -0
  239. package/lib/commonjs/mol-theme/label.d.ts +1 -1
  240. package/lib/commonjs/mol-theme/label.js +13 -1
  241. package/lib/commonjs/mol-util/param-definition.d.ts +4 -1
  242. package/lib/commonjs/mol-util/param-definition.js +5 -2
  243. package/lib/examples/alpha-orbitals/index.html +72 -72
  244. package/lib/examples/basic-wrapper/index.html +137 -137
  245. package/lib/examples/lighting/index.html +88 -88
  246. package/lib/examples/lighting/index.js +1 -1
  247. package/lib/examples/proteopedia-wrapper/index.html +236 -236
  248. package/lib/extensions/anvil/behavior.d.ts +1 -0
  249. package/lib/extensions/cellpack/model.js +2 -1
  250. package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
  251. package/lib/extensions/meshes/choice.d.ts +26 -0
  252. package/lib/extensions/meshes/choice.js +28 -0
  253. package/lib/extensions/meshes/examples.d.ts +26 -0
  254. package/lib/extensions/meshes/examples.js +325 -0
  255. package/lib/extensions/meshes/mesh-cif-schema.d.ts +29 -0
  256. package/lib/extensions/meshes/mesh-cif-schema.js +30 -0
  257. package/lib/extensions/meshes/mesh-extension.d.ts +66 -0
  258. package/lib/extensions/meshes/mesh-extension.js +218 -0
  259. package/lib/extensions/meshes/mesh-streaming/behavior.d.ts +105 -0
  260. package/lib/extensions/meshes/mesh-streaming/behavior.js +375 -0
  261. package/lib/extensions/meshes/mesh-streaming/server-info.d.ts +54 -0
  262. package/lib/extensions/meshes/mesh-streaming/server-info.js +26 -0
  263. package/lib/extensions/meshes/mesh-streaming/transformers.d.ts +42 -0
  264. package/lib/extensions/meshes/mesh-streaming/transformers.js +270 -0
  265. package/lib/extensions/meshes/mesh-utils.d.ts +41 -0
  266. package/lib/extensions/meshes/mesh-utils.js +346 -0
  267. package/lib/extensions/meshes/metadata.d.ts +108 -0
  268. package/lib/extensions/meshes/metadata.js +69 -0
  269. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
  270. package/lib/extensions/model-archive/quality-assessment/prop.d.ts +1 -0
  271. package/lib/extensions/model-archive/quality-assessment/prop.js +16 -4
  272. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +4 -2
  273. package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -0
  274. package/lib/extensions/volumes-and-segmentations/entry-meshes.d.ts +17 -0
  275. package/lib/extensions/volumes-and-segmentations/entry-meshes.js +153 -0
  276. package/lib/extensions/volumes-and-segmentations/entry-models.d.ts +12 -0
  277. package/lib/extensions/volumes-and-segmentations/entry-models.js +93 -0
  278. package/lib/extensions/volumes-and-segmentations/entry-root.d.ts +122 -0
  279. package/lib/extensions/volumes-and-segmentations/entry-root.js +571 -0
  280. package/lib/extensions/volumes-and-segmentations/entry-segmentation.d.ts +20 -0
  281. package/lib/extensions/volumes-and-segmentations/entry-segmentation.js +197 -0
  282. package/lib/extensions/volumes-and-segmentations/entry-state.d.ts +88 -0
  283. package/lib/extensions/volumes-and-segmentations/entry-state.js +29 -0
  284. package/lib/extensions/volumes-and-segmentations/entry-volume.d.ts +35 -0
  285. package/lib/extensions/volumes-and-segmentations/entry-volume.js +231 -0
  286. package/lib/extensions/volumes-and-segmentations/external-api.d.ts +11 -0
  287. package/lib/extensions/volumes-and-segmentations/external-api.js +80 -0
  288. package/lib/extensions/volumes-and-segmentations/global-state.d.ts +51 -0
  289. package/lib/extensions/volumes-and-segmentations/global-state.js +80 -0
  290. package/lib/extensions/volumes-and-segmentations/helpers.d.ts +56 -0
  291. package/lib/extensions/volumes-and-segmentations/helpers.js +163 -0
  292. package/lib/extensions/volumes-and-segmentations/index.d.ts +20 -0
  293. package/lib/extensions/volumes-and-segmentations/index.js +127 -0
  294. package/lib/extensions/volumes-and-segmentations/transformers.d.ts +33 -0
  295. package/lib/extensions/volumes-and-segmentations/transformers.js +82 -0
  296. package/lib/extensions/volumes-and-segmentations/ui.d.ts +29 -0
  297. package/lib/extensions/volumes-and-segmentations/ui.js +229 -0
  298. package/lib/extensions/volumes-and-segmentations/volseg-api/api.d.ts +22 -0
  299. package/lib/extensions/volumes-and-segmentations/volseg-api/api.js +80 -0
  300. package/lib/extensions/volumes-and-segmentations/volseg-api/data.d.ts +92 -0
  301. package/lib/extensions/volumes-and-segmentations/volseg-api/data.js +6 -0
  302. package/lib/extensions/volumes-and-segmentations/volseg-api/utils.d.ts +23 -0
  303. package/lib/extensions/volumes-and-segmentations/volseg-api/utils.js +75 -0
  304. package/lib/mol-canvas3d/canvas3d.d.ts +2 -0
  305. package/lib/mol-canvas3d/passes/draw.js +3 -3
  306. package/lib/mol-canvas3d/passes/image.d.ts +1 -0
  307. package/lib/mol-canvas3d/passes/postprocessing.d.ts +2 -1
  308. package/lib/mol-canvas3d/passes/postprocessing.js +27 -13
  309. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +2 -1
  310. package/lib/mol-geo/geometry/cylinders/cylinders.js +3 -2
  311. package/lib/mol-geo/geometry/lines/lines.d.ts +0 -1
  312. package/lib/mol-geo/geometry/points/points.d.ts +1 -1
  313. package/lib/mol-geo/geometry/spheres/spheres.d.ts +1 -0
  314. package/lib/mol-geo/geometry/spheres/spheres.js +3 -2
  315. package/lib/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
  316. package/lib/mol-gl/compute/marching-cubes/isosurface.js +4 -6
  317. package/lib/mol-gl/renderable/cylinders.d.ts +1 -0
  318. package/lib/mol-gl/renderable/cylinders.js +1 -1
  319. package/lib/mol-gl/renderable/spheres.d.ts +1 -0
  320. package/lib/mol-gl/renderable/spheres.js +1 -1
  321. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  322. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  323. package/lib/mol-gl/shader/chunks/clip-instance.glsl.d.ts +1 -1
  324. package/lib/mol-gl/shader/chunks/clip-instance.glsl.js +1 -1
  325. package/lib/mol-gl/shader/chunks/clip-pixel.glsl.d.ts +1 -1
  326. package/lib/mol-gl/shader/chunks/clip-pixel.glsl.js +1 -1
  327. package/lib/mol-gl/shader/chunks/common-clip.glsl.d.ts +2 -2
  328. package/lib/mol-gl/shader/chunks/common-clip.glsl.js +2 -2
  329. package/lib/mol-gl/shader/cylinders.frag.d.ts +1 -1
  330. package/lib/mol-gl/shader/cylinders.frag.js +1 -1
  331. package/lib/mol-gl/shader/cylinders.vert.d.ts +2 -2
  332. package/lib/mol-gl/shader/cylinders.vert.js +2 -2
  333. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  334. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  335. package/lib/mol-gl/shader/outlines.frag.d.ts +1 -1
  336. package/lib/mol-gl/shader/outlines.frag.js +1 -1
  337. package/lib/mol-gl/shader/postprocessing.frag.d.ts +1 -1
  338. package/lib/mol-gl/shader/postprocessing.frag.js +1 -1
  339. package/lib/mol-gl/shader/spheres.frag.d.ts +1 -1
  340. package/lib/mol-gl/shader/spheres.frag.js +1 -1
  341. package/lib/mol-gl/shader/spheres.vert.d.ts +2 -2
  342. package/lib/mol-gl/shader/spheres.vert.js +2 -2
  343. package/lib/mol-gl/webgl/renderbuffer.d.ts +1 -1
  344. package/lib/mol-gl/webgl/renderbuffer.js +15 -0
  345. package/lib/mol-gl/webgl/state.d.ts +12 -0
  346. package/lib/mol-gl/webgl/state.js +136 -0
  347. package/lib/mol-io/reader/cif/schema/segmentation.d.ts +38 -0
  348. package/lib/mol-io/reader/cif/schema/segmentation.js +19 -0
  349. package/lib/mol-io/reader/cif.d.ts +3 -1
  350. package/lib/mol-io/reader/cif.js +3 -1
  351. package/lib/mol-model/location.d.ts +2 -1
  352. package/lib/mol-model/loci.d.ts +11 -11
  353. package/lib/mol-model/loci.js +13 -1
  354. package/lib/mol-model/sequence/alignment/sequence.d.ts +4 -1
  355. package/lib/mol-model/sequence/alignment/sequence.js +3 -2
  356. package/lib/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -0
  357. package/lib/mol-model/structure/model/properties/utils/atomic-index.js +8 -0
  358. package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +21 -5
  359. package/lib/mol-model/structure/structure/util/superposition.d.ts +1 -0
  360. package/lib/mol-model/structure/structure/util/superposition.js +1 -1
  361. package/lib/mol-model/volume/volume.d.ts +35 -2
  362. package/lib/mol-model/volume/volume.js +79 -4
  363. package/lib/mol-model-formats/volume/segmentation.d.ts +23 -0
  364. package/lib/mol-model-formats/volume/segmentation.js +135 -0
  365. package/lib/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  366. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +1 -0
  367. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +2 -1
  368. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  369. package/lib/mol-plugin/commands.d.ts +1 -0
  370. package/lib/mol-plugin/version.js +2 -2
  371. package/lib/mol-plugin-state/animation/built-in/model-index.js +4 -1
  372. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
  373. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
  374. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +13 -4
  375. package/lib/mol-plugin-state/builder/structure/representation-preset.js +6 -1
  376. package/lib/mol-plugin-state/builder/structure/representation.d.ts +1 -0
  377. package/lib/mol-plugin-state/formats/provider.d.ts +2 -2
  378. package/lib/mol-plugin-state/formats/provider.js +11 -3
  379. package/lib/mol-plugin-state/formats/registry.js +6 -5
  380. package/lib/mol-plugin-state/formats/volume.d.ts +27 -0
  381. package/lib/mol-plugin-state/formats/volume.js +64 -0
  382. package/lib/mol-plugin-state/manager/structure/component.d.ts +1 -1
  383. package/lib/mol-plugin-state/manager/structure/component.js +18 -13
  384. package/lib/mol-plugin-state/transforms/representation.d.ts +1 -2
  385. package/lib/mol-plugin-state/transforms/representation.js +5 -6
  386. package/lib/mol-plugin-state/transforms/volume.d.ts +11 -1
  387. package/lib/mol-plugin-state/transforms/volume.js +54 -1
  388. package/lib/mol-plugin-ui/controls/line-graph/line-graph-component.d.ts +1 -0
  389. package/lib/mol-plugin-ui/controls/line-graph/line-graph-component.js +33 -13
  390. package/lib/mol-plugin-ui/controls/parameters.d.ts +1 -0
  391. package/lib/mol-plugin-ui/controls/parameters.js +22 -5
  392. package/lib/mol-plugin-ui/sequence/sequence.d.ts +25 -17
  393. package/lib/mol-plugin-ui/sequence.d.ts +19 -1
  394. package/lib/mol-plugin-ui/sequence.js +7 -7
  395. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  396. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  397. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  398. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  399. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  400. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  401. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  402. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  403. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  404. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  405. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  406. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  407. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +137 -128
  408. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  409. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  410. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  411. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  412. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  413. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  414. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  415. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  416. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  417. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  418. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  419. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  420. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  421. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  422. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  423. package/lib/mol-plugin-ui/state/apply-action.d.ts +2 -10
  424. package/lib/mol-plugin-ui/state/apply-action.js +2 -2
  425. package/lib/mol-plugin-ui/structure/quick-styles.js +2 -2
  426. package/lib/mol-plugin-ui/structure/superposition.d.ts +1 -1
  427. package/lib/mol-plugin-ui/structure/volume.d.ts +1 -1
  428. package/lib/mol-plugin-ui/structure/volume.js +3 -2
  429. package/lib/mol-repr/structure/complex-visual.d.ts +1 -0
  430. package/lib/mol-repr/structure/params.d.ts +2 -0
  431. package/lib/mol-repr/structure/registry.d.ts +12 -0
  432. package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
  433. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +6 -0
  434. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +6 -0
  435. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
  436. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
  437. package/lib/mol-repr/structure/representation/line.d.ts +3 -0
  438. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
  439. package/lib/mol-repr/structure/representation/point.d.ts +3 -0
  440. package/lib/mol-repr/structure/representation/spacefill.d.ts +6 -0
  441. package/lib/mol-repr/structure/units-visual.d.ts +2 -0
  442. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +4 -0
  443. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +2 -0
  444. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +1 -0
  445. package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +1 -0
  446. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +4 -0
  447. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -0
  448. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -0
  449. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +1 -0
  450. package/lib/mol-repr/structure/visual/element-cross.d.ts +1 -0
  451. package/lib/mol-repr/structure/visual/element-cross.js +2 -1
  452. package/lib/mol-repr/structure/visual/element-point.d.ts +1 -0
  453. package/lib/mol-repr/structure/visual/element-point.js +2 -1
  454. package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
  455. package/lib/mol-repr/structure/visual/element-sphere.js +3 -1
  456. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
  457. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +6 -2
  458. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
  459. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +9 -1
  460. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +1 -0
  461. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +3 -1
  462. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
  463. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +4 -0
  464. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +1 -0
  465. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +2 -0
  466. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
  467. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
  468. package/lib/mol-repr/structure/visual/util/bond.d.ts +7 -0
  469. package/lib/mol-repr/structure/visual/util/bond.js +19 -8
  470. package/lib/mol-repr/structure/visual/util/common.d.ts +4 -1
  471. package/lib/mol-repr/structure/visual/util/common.js +10 -6
  472. package/lib/mol-repr/structure/visual/util/element.d.ts +1 -0
  473. package/lib/mol-repr/structure/visual/util/element.js +3 -4
  474. package/lib/mol-repr/structure/visual/util/gaussian.d.ts +2 -0
  475. package/lib/mol-repr/volume/direct-volume.d.ts +4 -4
  476. package/lib/mol-repr/volume/direct-volume.js +8 -6
  477. package/lib/mol-repr/volume/isosurface.d.ts +4 -4
  478. package/lib/mol-repr/volume/isosurface.js +17 -16
  479. package/lib/mol-repr/volume/registry.d.ts +54 -1
  480. package/lib/mol-repr/volume/registry.js +3 -1
  481. package/lib/mol-repr/volume/representation.d.ts +11 -7
  482. package/lib/mol-repr/volume/representation.js +144 -49
  483. package/lib/mol-repr/volume/segment.d.ts +291 -0
  484. package/lib/mol-repr/volume/segment.js +279 -0
  485. package/lib/mol-repr/volume/slice.d.ts +2 -2
  486. package/lib/mol-repr/volume/slice.js +5 -5
  487. package/lib/mol-repr/volume/util.d.ts +12 -3
  488. package/lib/mol-repr/volume/util.js +71 -6
  489. package/lib/mol-script/language/builder.d.ts +1 -0
  490. package/lib/mol-theme/color/volume-segment.d.ts +41 -0
  491. package/lib/mol-theme/color/volume-segment.js +53 -0
  492. package/lib/mol-theme/color/volume-value.js +2 -1
  493. package/lib/mol-theme/color.d.ts +15 -0
  494. package/lib/mol-theme/color.js +2 -0
  495. package/lib/mol-theme/label.d.ts +1 -1
  496. package/lib/mol-theme/label.js +13 -1
  497. package/lib/mol-util/param-definition.d.ts +4 -1
  498. package/lib/mol-util/param-definition.js +5 -2
  499. package/package.json +169 -168
@@ -1,89 +1,89 @@
1
- <!DOCTYPE html>
2
- <html lang="en">
3
- <head>
4
- <meta charset="utf-8" />
5
- <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
- <title>Mol* Lighting Demo</title>
7
- <style>
8
- * {
9
- margin: 0;
10
- padding: 0;
11
- box-sizing: border-box;
12
- }
13
- #app {
14
- position: absolute;
15
- width: 100%;
16
- height: 100%;
17
- }
18
-
19
- #controls {
20
- position: absolute;
21
- width: 150px;
22
- bottom: 100px;
23
- right: 50px;
24
- z-index: 10;
25
- font-family: sans-serif;
26
- font-size: smaller;
27
- }
28
-
29
- #controls > button {
30
- display: block;
31
- width: 100%;
32
- text-align: left;
33
- margin: 5px 0px;
34
- }
35
-
36
- #controls > input, #controls > select {
37
- width: 100%;
38
- display: block;
39
- }
40
- </style>
41
- <link rel="stylesheet" type="text/css" href="molstar.css" />
42
- <script type="text/javascript" src="./index.js"></script>
43
- </head>
44
- <body>
45
- <div id='controls'></div>
46
- <div id="app"></div>
47
- <script>
48
- LightingDemo.init('app').then(() => {
49
- LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3);
50
- });
51
-
52
- addHeader('Example PDB IDs');
53
- addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
54
- addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
55
- addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
56
- addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
57
-
58
- addSeparator()
59
-
60
- addHeader('Lighting Presets');
61
- addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
62
- addControl('Standard', () => LightingDemo.setPreset('standard'));
63
- addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
64
-
65
- ////////////////////////////////////////////////////////
66
-
67
- function $(id) { return document.getElementById(id); }
68
-
69
- function addControl(label, action) {
70
- var btn = document.createElement('button');
71
- btn.onclick = action;
72
- btn.innerText = label;
73
- $('controls').appendChild(btn);
74
- }
75
-
76
- function addSeparator() {
77
- var hr = document.createElement('br');
78
- $('controls').appendChild(hr);
79
- }
80
-
81
- function addHeader(header) {
82
- var h = document.createElement('h3');
83
- h.innerText = header;
84
- $('controls').appendChild(h);
85
- }
86
- </script>
87
- <!-- __MOLSTAR_ANALYTICS__ -->
88
- </body>
1
+ <!DOCTYPE html>
2
+ <html lang="en">
3
+ <head>
4
+ <meta charset="utf-8" />
5
+ <meta name="viewport" content="width=device-width, user-scalable=no, minimum-scale=1.0, maximum-scale=1.0">
6
+ <title>Mol* Lighting Demo</title>
7
+ <style>
8
+ * {
9
+ margin: 0;
10
+ padding: 0;
11
+ box-sizing: border-box;
12
+ }
13
+ #app {
14
+ position: absolute;
15
+ width: 100%;
16
+ height: 100%;
17
+ }
18
+
19
+ #controls {
20
+ position: absolute;
21
+ width: 150px;
22
+ bottom: 100px;
23
+ right: 50px;
24
+ z-index: 10;
25
+ font-family: sans-serif;
26
+ font-size: smaller;
27
+ }
28
+
29
+ #controls > button {
30
+ display: block;
31
+ width: 100%;
32
+ text-align: left;
33
+ margin: 5px 0px;
34
+ }
35
+
36
+ #controls > input, #controls > select {
37
+ width: 100%;
38
+ display: block;
39
+ }
40
+ </style>
41
+ <link rel="stylesheet" type="text/css" href="molstar.css" />
42
+ <script type="text/javascript" src="./index.js"></script>
43
+ </head>
44
+ <body>
45
+ <div id='controls'></div>
46
+ <div id="app"></div>
47
+ <script>
48
+ LightingDemo.init('app').then(() => {
49
+ LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3);
50
+ });
51
+
52
+ addHeader('Example PDB IDs');
53
+ addControl('4KTC', () => LightingDemo.load({ url: 'https://models.rcsb.org/4KTC.bcif', assemblyId: '1' }, 5, 1.3));
54
+ addControl('5FJ5', () => LightingDemo.load({ url: 'https://models.rcsb.org/5FJ5.bcif', assemblyId: '1' }, 8, 1.8));
55
+ addControl('1UPN', () => LightingDemo.load({ url: 'https://models.rcsb.org/1UPN.bcif', assemblyId: '1' }, 7, 1.6));
56
+ addControl('1RB8', () => LightingDemo.load({ url: 'https://models.rcsb.org/1RB8.bcif', assemblyId: '1' }, 6, 1.3));
57
+
58
+ addSeparator()
59
+
60
+ addHeader('Lighting Presets');
61
+ addControl('Illustrative', () => LightingDemo.setPreset('illustrative'));
62
+ addControl('Standard', () => LightingDemo.setPreset('standard'));
63
+ addControl('Ambient Occlusion', () => LightingDemo.setPreset('occlusion'));
64
+
65
+ ////////////////////////////////////////////////////////
66
+
67
+ function $(id) { return document.getElementById(id); }
68
+
69
+ function addControl(label, action) {
70
+ var btn = document.createElement('button');
71
+ btn.onclick = action;
72
+ btn.innerText = label;
73
+ $('controls').appendChild(btn);
74
+ }
75
+
76
+ function addSeparator() {
77
+ var hr = document.createElement('br');
78
+ $('controls').appendChild(hr);
79
+ }
80
+
81
+ function addHeader(header) {
82
+ var h = document.createElement('h3');
83
+ h.innerText = header;
84
+ $('controls').appendChild(h);
85
+ }
86
+ </script>
87
+ <!-- __MOLSTAR_ANALYTICS__ -->
88
+ </body>
89
89
  </html>
@@ -16,7 +16,7 @@ var Canvas3DPresets = {
16
16
  canvas3d: {
17
17
  postprocessing: {
18
18
  occlusion: { name: 'on', params: { samples: 32, radius: 6, bias: 1.4, blurKernelSize: 15, resolutionScale: 1 } },
19
- outline: { name: 'on', params: { scale: 1, threshold: 0.33, color: Color(0x000000) } },
19
+ outline: { name: 'on', params: { scale: 1, threshold: 0.33, color: Color(0x000000), includeTransparent: true, } },
20
20
  shadow: { name: 'off', params: {} },
21
21
  },
22
22
  renderer: {