molstar 3.0.2 → 3.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.js +0 -1
- package/lib/apps/docking-viewer/viewport.d.ts +2 -0
- package/lib/apps/docking-viewer/viewport.js +5 -5
- package/lib/apps/viewer/app.d.ts +1 -0
- package/lib/apps/viewer/app.js +0 -1
- package/lib/apps/viewer/index.js +0 -1
- package/lib/cli/chem-comp-dict/create-ions.js +0 -1
- package/lib/cli/chem-comp-dict/create-table.js +0 -1
- package/lib/cli/chem-comp-dict/util.js +0 -1
- package/lib/cli/cif2bcif/converter.js +0 -1
- package/lib/cli/cif2bcif/index.js +0 -1
- package/lib/cli/cifschema/index.js +0 -1
- package/lib/cli/cifschema/util/cif-dic.js +0 -1
- package/lib/cli/cifschema/util/generate.js +0 -1
- package/lib/cli/cifschema/util/helper.js +0 -1
- package/lib/cli/cifschema/util/schema.js +0 -1
- package/lib/cli/lipid-params/index.js +0 -1
- package/lib/cli/state-docs/index.js +0 -1
- package/lib/cli/state-docs/pd-to-md.js +0 -1
- package/lib/cli/structure-info/helpers.js +0 -1
- package/lib/cli/structure-info/model.js +0 -1
- package/lib/cli/structure-info/volume.js +0 -1
- package/lib/commonjs/apps/docking-viewer/index.js +0 -1
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -0
- package/lib/commonjs/apps/docking-viewer/viewport.js +5 -5
- package/lib/commonjs/apps/viewer/app.d.ts +1 -0
- package/lib/commonjs/apps/viewer/app.js +0 -1
- package/lib/commonjs/apps/viewer/index.js +0 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +0 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +0 -1
- package/lib/commonjs/cli/chem-comp-dict/util.js +0 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +0 -1
- package/lib/commonjs/cli/cif2bcif/index.js +0 -1
- package/lib/commonjs/cli/cifschema/index.js +0 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +0 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +0 -1
- package/lib/commonjs/cli/cifschema/util/helper.js +0 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +0 -1
- package/lib/commonjs/cli/lipid-params/index.js +0 -1
- package/lib/commonjs/cli/state-docs/index.js +0 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +0 -1
- package/lib/commonjs/cli/structure-info/helpers.js +0 -1
- package/lib/commonjs/cli/structure-info/model.js +0 -1
- package/lib/commonjs/cli/structure-info/volume.js +0 -1
- package/lib/commonjs/examples/alpha-orbitals/controls.js +0 -1
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +0 -1
- package/lib/commonjs/examples/alpha-orbitals/index.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/coloring.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/controls.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/index.js +0 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/schemas.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +0 -1
- package/lib/commonjs/examples/domain-annotation-server/test.js +0 -1
- package/lib/commonjs/examples/lighting/index.js +2 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +0 -1
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +0 -1
- package/lib/commonjs/examples/task.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/density.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +0 -1
- package/lib/commonjs/extensions/anvil/algorithm.js +0 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/behavior.js +0 -1
- package/lib/commonjs/extensions/anvil/prop.js +0 -1
- package/lib/commonjs/extensions/anvil/representation.js +0 -1
- package/lib/commonjs/extensions/cellpack/color/generate.js +0 -1
- package/lib/commonjs/extensions/cellpack/color/provided.js +0 -1
- package/lib/commonjs/extensions/cellpack/curve.js +0 -1
- package/lib/commonjs/extensions/cellpack/data.js +0 -1
- package/lib/commonjs/extensions/cellpack/index.js +0 -1
- package/lib/commonjs/extensions/cellpack/model.js +0 -1
- package/lib/commonjs/extensions/cellpack/preset.js +0 -1
- package/lib/commonjs/extensions/cellpack/property.js +0 -1
- package/lib/commonjs/extensions/cellpack/representation.js +0 -1
- package/lib/commonjs/extensions/cellpack/state.js +0 -1
- package/lib/commonjs/extensions/cellpack/util.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/property.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/types.js +0 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +0 -1
- package/lib/commonjs/extensions/dnatco/index.js +0 -1
- package/lib/commonjs/extensions/g3d/data.js +0 -1
- package/lib/commonjs/extensions/g3d/format.js +0 -1
- package/lib/commonjs/extensions/g3d/model.js +0 -1
- package/lib/commonjs/extensions/geo-export/controls.js +0 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/index.js +0 -1
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/render-object-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +0 -1
- package/lib/commonjs/extensions/geo-export/ui.js +0 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +0 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +0 -1
- package/lib/commonjs/extensions/model-export/export.js +0 -1
- package/lib/commonjs/extensions/model-export/index.js +0 -1
- package/lib/commonjs/extensions/model-export/ui.js +0 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +0 -1
- package/lib/commonjs/extensions/mp4-export/encoder.js +0 -1
- package/lib/commonjs/extensions/mp4-export/index.js +0 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +0 -1
- package/lib/commonjs/extensions/pdbe/index.js +0 -1
- package/lib/commonjs/extensions/pdbe/preferred-assembly.js +0 -1
- package/lib/commonjs/extensions/pdbe/struct-ref-domain.js +0 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +0 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +0 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -0
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +0 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/ui.js +0 -1
- package/lib/commonjs/extensions/rcsb/graphql/symmetry.gql.js +0 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +169 -12
- package/lib/commonjs/extensions/rcsb/graphql/types.js +0 -1
- package/lib/commonjs/extensions/rcsb/index.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -0
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +0 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera/stereo.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera/util.js +0 -1
- package/lib/commonjs/mol-canvas3d/camera.js +0 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.js +32 -25
- package/lib/commonjs/mol-canvas3d/controls/object.js +0 -1
- package/lib/commonjs/mol-canvas3d/controls/trackball.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/helper.js +0 -1
- package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +12 -10
- package/lib/commonjs/mol-canvas3d/passes/fxaa.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/image.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/marking.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +20 -7
- package/lib/commonjs/mol-canvas3d/passes/passes.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/pick.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +8 -1
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +50 -21
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +0 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +0 -1
- package/lib/commonjs/mol-canvas3d/util.js +0 -1
- package/lib/commonjs/mol-data/db/column-helpers.js +0 -1
- package/lib/commonjs/mol-data/db/column.js +0 -1
- package/lib/commonjs/mol-data/db/database.js +0 -1
- package/lib/commonjs/mol-data/db/table.js +0 -1
- package/lib/commonjs/mol-data/db.js +0 -1
- package/lib/commonjs/mol-data/generic/hash-set.js +0 -1
- package/lib/commonjs/mol-data/generic/linked-list.js +0 -1
- package/lib/commonjs/mol-data/generic/unique-array.js +0 -1
- package/lib/commonjs/mol-data/generic.js +0 -1
- package/lib/commonjs/mol-data/index.js +0 -1
- package/lib/commonjs/mol-data/int/impl/interval.js +0 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +0 -1
- package/lib/commonjs/mol-data/int/impl/segmentation.js +0 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +0 -1
- package/lib/commonjs/mol-data/int/interval.js +0 -1
- package/lib/commonjs/mol-data/int/linked-index.js +0 -1
- package/lib/commonjs/mol-data/int/map.js +0 -1
- package/lib/commonjs/mol-data/int/ordered-set.js +0 -1
- package/lib/commonjs/mol-data/int/segmentation.js +0 -1
- package/lib/commonjs/mol-data/int/sorted-array.js +0 -1
- package/lib/commonjs/mol-data/int/sorted-ranges.js +0 -1
- package/lib/commonjs/mol-data/int/tuple.js +0 -1
- package/lib/commonjs/mol-data/int.js +0 -1
- package/lib/commonjs/mol-data/iterator.js +0 -1
- package/lib/commonjs/mol-data/util/array.js +0 -1
- package/lib/commonjs/mol-data/util/buckets.js +0 -1
- package/lib/commonjs/mol-data/util/chunked-array.js +0 -1
- package/lib/commonjs/mol-data/util/combination.js +0 -1
- package/lib/commonjs/mol-data/util/equivalence-classes.js +0 -1
- package/lib/commonjs/mol-data/util/grouping.js +0 -1
- package/lib/commonjs/mol-data/util/hash-functions.js +0 -1
- package/lib/commonjs/mol-data/util/interval-iterator.js +0 -1
- package/lib/commonjs/mol-data/util/sort.js +0 -1
- package/lib/commonjs/mol-data/util.js +0 -1
- package/lib/commonjs/mol-geo/geometry/base.js +0 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/color-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +0 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +0 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +0 -1
- package/lib/commonjs/mol-geo/geometry/geometry.js +0 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +0 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +2 -3
- package/lib/commonjs/mol-geo/geometry/marker-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/laplacian-smoothing.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +0 -1
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/picking.js +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +0 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +0 -1
- package/lib/commonjs/mol-geo/geometry/substance-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +0 -1
- package/lib/commonjs/mol-geo/geometry/text/text-builder.js +0 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +0 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +0 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +0 -1
- package/lib/commonjs/mol-geo/geometry/transform-data.js +0 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +0 -1
- package/lib/commonjs/mol-geo/primitive/box.js +0 -1
- package/lib/commonjs/mol-geo/primitive/cage.js +0 -1
- package/lib/commonjs/mol-geo/primitive/circle.js +0 -1
- package/lib/commonjs/mol-geo/primitive/cylinder.js +0 -1
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/octahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/plane.js +0 -1
- package/lib/commonjs/mol-geo/primitive/polygon.js +0 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/primitive.js +0 -1
- package/lib/commonjs/mol-geo/primitive/prism.js +0 -1
- package/lib/commonjs/mol-geo/primitive/pyramid.js +0 -1
- package/lib/commonjs/mol-geo/primitive/sphere.js +0 -1
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +0 -1
- package/lib/commonjs/mol-geo/primitive/star.js +0 -1
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +0 -1
- package/lib/commonjs/mol-geo/primitive/torus.js +0 -1
- package/lib/commonjs/mol-geo/primitive/wedge.js +0 -1
- package/lib/commonjs/mol-geo/util/location-iterator.js +0 -1
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +0 -1
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +0 -1
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +0 -1
- package/lib/commonjs/mol-geo/util.js +0 -1
- package/lib/commonjs/mol-gl/commit-queue.js +0 -1
- package/lib/commonjs/mol-gl/compute/grid3d.js +0 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +0 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +0 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +0 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +0 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +0 -1
- package/lib/commonjs/mol-gl/compute/util.js +0 -1
- package/lib/commonjs/mol-gl/object3d.js +0 -1
- package/lib/commonjs/mol-gl/render-object.js +0 -1
- package/lib/commonjs/mol-gl/renderable/cylinders.js +0 -1
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +0 -1
- package/lib/commonjs/mol-gl/renderable/image.js +0 -1
- package/lib/commonjs/mol-gl/renderable/lines.js +0 -1
- package/lib/commonjs/mol-gl/renderable/mesh.js +0 -1
- package/lib/commonjs/mol-gl/renderable/points.js +0 -1
- package/lib/commonjs/mol-gl/renderable/schema.js +0 -1
- package/lib/commonjs/mol-gl/renderable/spheres.js +0 -1
- package/lib/commonjs/mol-gl/renderable/text.js +0 -1
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +0 -1
- package/lib/commonjs/mol-gl/renderable/util.js +0 -1
- package/lib/commonjs/mol-gl/renderable.js +0 -1
- package/lib/commonjs/mol-gl/renderer.js +3 -5
- package/lib/commonjs/mol-gl/scene.d.ts +2 -1
- package/lib/commonjs/mol-gl/scene.js +14 -3
- package/lib/commonjs/mol-gl/shader/chunks/apply-fog.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-interior-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +2 -3
- package/lib/commonjs/mol-gl/shader/chunks/apply-marker-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/check-picking-alpha.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-instance.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/clip-pixel.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/float-to-rgba.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/matrix-scale.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/normal-frag-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/read-from-texture.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/rgba-to-float.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/size-vert-params.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +0 -1
- package/lib/commonjs/mol-gl/shader/compose.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/copy.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +2 -3
- package/lib/commonjs/mol-gl/shader/cylinders.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/depth-merge.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +2 -3
- package/lib/commonjs/mol-gl/shader/direct-volume.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/evaluate-wboit.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/fxaa.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/sum.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/image.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/lines.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/lines.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/active-voxels.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/marking/edge.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/marking/overlay.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +2 -3
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/outlines.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/points.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/points.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/postprocessing.frag.js +2 -3
- package/lib/commonjs/mol-gl/shader/quad.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/smaa/blend.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/smaa/blend.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/smaa/edges.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/smaa/edges.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/smaa/weights.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/smaa/weights.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +2 -2
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +2 -3
- package/lib/commonjs/mol-gl/shader/spheres.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/ssao-blur.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/ssao.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/text.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader/text.vert.js +0 -1
- package/lib/commonjs/mol-gl/shader/util/grid3d-template.frag.js +0 -1
- package/lib/commonjs/mol-gl/shader-code.js +0 -1
- package/lib/commonjs/mol-gl/webgl/buffer.js +0 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +0 -1
- package/lib/commonjs/mol-gl/webgl/context.js +0 -1
- package/lib/commonjs/mol-gl/webgl/extensions.js +0 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +0 -1
- package/lib/commonjs/mol-gl/webgl/program.js +0 -1
- package/lib/commonjs/mol-gl/webgl/render-item.js +0 -1
- package/lib/commonjs/mol-gl/webgl/render-target.js +0 -1
- package/lib/commonjs/mol-gl/webgl/renderbuffer.js +0 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +0 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +0 -1
- package/lib/commonjs/mol-gl/webgl/state.js +0 -1
- package/lib/commonjs/mol-gl/webgl/texture.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +9 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js +0 -1
- package/lib/commonjs/mol-gl/webgl/vertex-array.js +0 -1
- package/lib/commonjs/mol-io/common/ascii.js +0 -1
- package/lib/commonjs/mol-io/common/binary-cif/array-encoder.js +0 -1
- package/lib/commonjs/mol-io/common/binary-cif/classifier.js +0 -1
- package/lib/commonjs/mol-io/common/binary-cif/decoder.js +0 -1
- package/lib/commonjs/mol-io/common/binary-cif/encoding.js +0 -1
- package/lib/commonjs/mol-io/common/binary-cif.js +0 -1
- package/lib/commonjs/mol-io/common/binary.js +0 -1
- package/lib/commonjs/mol-io/common/file-handle.js +0 -1
- package/lib/commonjs/mol-io/common/msgpack/decode.js +0 -1
- package/lib/commonjs/mol-io/common/msgpack/encode.js +0 -1
- package/lib/commonjs/mol-io/common/simple-buffer.js +0 -1
- package/lib/commonjs/mol-io/common/typed-array.js +0 -1
- package/lib/commonjs/mol-io/common/utf8.js +0 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/ccp4/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/binary/field.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -2
- package/lib/commonjs/mol-io/reader/cif/schema/ccd-extras.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -2
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ddl.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/dic.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +28 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +27 -2
- package/lib/commonjs/mol-io/reader/cif/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/cif.js +0 -1
- package/lib/commonjs/mol-io/reader/common/binary/column.js +0 -1
- package/lib/commonjs/mol-io/reader/common/text/column/fixed.js +0 -1
- package/lib/commonjs/mol-io/reader/common/text/column/token.js +0 -1
- package/lib/commonjs/mol-io/reader/common/text/number-parser.js +0 -1
- package/lib/commonjs/mol-io/reader/common/text/tokenizer.js +0 -1
- package/lib/commonjs/mol-io/reader/csv/data-model.js +0 -1
- package/lib/commonjs/mol-io/reader/csv/field.js +0 -1
- package/lib/commonjs/mol-io/reader/csv/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/csv/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/cube/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/dcd/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/dsn6/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/dsn6/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/dx/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/gro/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/mol/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/mol2/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/mol2/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/obj/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/pdb/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/pdb/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/ply/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js +0 -1
- package/lib/commonjs/mol-io/reader/psf/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/result.js +0 -1
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +0 -1
- package/lib/commonjs/mol-io/reader/sdf/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/xtc/parser.js +0 -1
- package/lib/commonjs/mol-io/reader/xyz/parser.js +0 -1
- package/lib/commonjs/mol-io/utils/short-string-pool.js +0 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/binary.js +0 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +0 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/util.js +0 -1
- package/lib/commonjs/mol-io/writer/cif/encoder.js +0 -1
- package/lib/commonjs/mol-io/writer/cif.js +0 -1
- package/lib/commonjs/mol-io/writer/encoder.js +0 -1
- package/lib/commonjs/mol-io/writer/ligand-encoder.js +0 -1
- package/lib/commonjs/mol-io/writer/mol/encoder.js +0 -1
- package/lib/commonjs/mol-io/writer/mol.js +0 -1
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +0 -1
- package/lib/commonjs/mol-io/writer/mol2.js +0 -1
- package/lib/commonjs/mol-io/writer/sdf.js +0 -1
- package/lib/commonjs/mol-io/writer/writer.js +0 -1
- package/lib/commonjs/mol-math/approx.js +0 -1
- package/lib/commonjs/mol-math/easing.js +0 -1
- package/lib/commonjs/mol-math/geometry/boundary-helper.js +0 -1
- package/lib/commonjs/mol-math/geometry/boundary.js +0 -1
- package/lib/commonjs/mol-math/geometry/centroid-helper.js +0 -1
- package/lib/commonjs/mol-math/geometry/common.js +0 -1
- package/lib/commonjs/mol-math/geometry/distance-transform.js +0 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/cpu.js +0 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +0 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density.js +0 -1
- package/lib/commonjs/mol-math/geometry/lookup3d/common.js +0 -1
- package/lib/commonjs/mol-math/geometry/lookup3d/grid.js +0 -1
- package/lib/commonjs/mol-math/geometry/molecular-surface.js +0 -1
- package/lib/commonjs/mol-math/geometry/primitives/axes3d.js +0 -1
- package/lib/commonjs/mol-math/geometry/primitives/box3d.js +0 -1
- package/lib/commonjs/mol-math/geometry/primitives/sphere3d.js +0 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/cell.js +0 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +0 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +0 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +0 -1
- package/lib/commonjs/mol-math/geometry.js +0 -1
- package/lib/commonjs/mol-math/graph/int-adjacency-graph.js +0 -1
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +0 -1
- package/lib/commonjs/mol-math/graph.js +0 -1
- package/lib/commonjs/mol-math/histogram.js +0 -1
- package/lib/commonjs/mol-math/interpolate.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/common.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/mat3.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/mat4.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/minimize-rmsd.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/3d.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/matrix/evd.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/matrix/matrix.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/matrix/principal-axes.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/matrix/svd.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra/tensor.js +0 -1
- package/lib/commonjs/mol-math/linear-algebra.js +0 -1
- package/lib/commonjs/mol-math/misc.js +0 -1
- package/lib/commonjs/mol-model/custom-property.js +0 -1
- package/lib/commonjs/mol-model/location.js +0 -1
- package/lib/commonjs/mol-model/loci.js +0 -1
- package/lib/commonjs/mol-model/sequence/alignment/alignment.js +0 -1
- package/lib/commonjs/mol-model/sequence/alignment/sequence.js +0 -1
- package/lib/commonjs/mol-model/sequence/alignment/substitution-matrix.js +0 -1
- package/lib/commonjs/mol-model/sequence/alignment.js +0 -1
- package/lib/commonjs/mol-model/sequence/constants.js +0 -1
- package/lib/commonjs/mol-model/sequence/sequence.js +0 -1
- package/lib/commonjs/mol-model/sequence.js +0 -1
- package/lib/commonjs/mol-model/shape/provider.js +0 -1
- package/lib/commonjs/mol-model/shape/shape.js +0 -1
- package/lib/commonjs/mol-model/shape.js +0 -1
- package/lib/commonjs/mol-model/structure/coordinates/coordinates.js +0 -1
- package/lib/commonjs/mol-model/structure/coordinates.js +0 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +68 -2
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +0 -1
- package/lib/commonjs/mol-model/structure/export/categories/misc.js +0 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +8 -9
- package/lib/commonjs/mol-model/structure/export/categories/sequence.js +0 -1
- package/lib/commonjs/mol-model/structure/export/categories/utils.js +0 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js +0 -1
- package/lib/commonjs/mol-model/structure/model/indexing.js +0 -1
- package/lib/commonjs/mol-model/structure/model/model.d.ts +5 -1
- package/lib/commonjs/mol-model/structure/model/model.js +38 -26
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/conformation.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/measures.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/types.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse/conformation.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse/hierarchy.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/coarse.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/common.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/custom/indexed.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/global-transform.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/seconday-structure.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/sequence.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-ranges.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-ranges.js +0 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js +0 -1
- package/lib/commonjs/mol-model/structure/model/types/ions.js +0 -1
- package/lib/commonjs/mol-model/structure/model/types/lipids.js +0 -1
- package/lib/commonjs/mol-model/structure/model/types.js +0 -1
- package/lib/commonjs/mol-model/structure/model/util.js +0 -1
- package/lib/commonjs/mol-model/structure/model.js +0 -1
- package/lib/commonjs/mol-model/structure/query/context.js +0 -1
- package/lib/commonjs/mol-model/structure/query/predicates.js +0 -1
- package/lib/commonjs/mol-model/structure/query/queries/combinators.js +0 -1
- package/lib/commonjs/mol-model/structure/query/queries/filters.js +0 -1
- package/lib/commonjs/mol-model/structure/query/queries/generators.js +0 -1
- package/lib/commonjs/mol-model/structure/query/queries/internal.js +0 -1
- package/lib/commonjs/mol-model/structure/query/queries/modifiers.js +0 -1
- package/lib/commonjs/mol-model/structure/query/query.js +0 -1
- package/lib/commonjs/mol-model/structure/query/selection.js +0 -1
- package/lib/commonjs/mol-model/structure/query/utils/builders.js +0 -1
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.js +0 -1
- package/lib/commonjs/mol-model/structure/query/utils/structure-set.js +0 -1
- package/lib/commonjs/mol-model/structure/query.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/constants.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/data.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element/bundle.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element/element.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element/location.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element/stats.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/element.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/properties.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/structure.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js +9 -3
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/common.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.d.ts +2 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/data.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/element-set-intra-bond-cache.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/inter-compute.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -2
- package/lib/commonjs/mol-model/structure/structure/unit/bonds.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/unit/resonance.d.ts +23 -0
- package/lib/commonjs/mol-model/structure/structure/unit/resonance.js +64 -0
- package/lib/commonjs/mol-model/structure/structure/unit/rings/compute.js +70 -44
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -1
- package/lib/commonjs/mol-model/structure/structure/unit.js +37 -7
- package/lib/commonjs/mol-model/structure/structure/util/boundary.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/lookup3d.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/polymer.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/principal-axes.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/subset-builder.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/superposition-sifts-mapping.d.ts +21 -0
- package/lib/commonjs/mol-model/structure/structure/util/{superposition-db-mapping.js → superposition-sifts-mapping.js} +39 -20
- package/lib/commonjs/mol-model/structure/structure/util/superposition.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/unique-subset-builder.js +0 -1
- package/lib/commonjs/mol-model/structure/structure/util/unit-transforms.js +0 -1
- package/lib/commonjs/mol-model/structure/structure.js +0 -1
- package/lib/commonjs/mol-model/structure/topology/topology.js +0 -1
- package/lib/commonjs/mol-model/structure/topology.js +0 -1
- package/lib/commonjs/mol-model/structure/trajectory.js +0 -1
- package/lib/commonjs/mol-model/structure/util.js +0 -1
- package/lib/commonjs/mol-model/structure.js +0 -1
- package/lib/commonjs/mol-model/volume/grid.js +0 -1
- package/lib/commonjs/mol-model/volume/volume.js +0 -1
- package/lib/commonjs/mol-model/volume.js +0 -1
- package/lib/commonjs/mol-model-formats/format.js +0 -1
- package/lib/commonjs/mol-model-formats/shape/ply.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/atomic.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/coarse.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/entities.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/parser.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/properties.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +5 -0
- package/lib/commonjs/mol-model-formats/structure/basic/schema.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/sequence.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/sort.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/basic/util.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/cif-core.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/common/component.js +3 -4
- package/lib/commonjs/mol-model-formats/structure/common/entity.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/common/property.d.ts +5 -2
- package/lib/commonjs/mol-model-formats/structure/common/property.js +20 -9
- package/lib/commonjs/mol-model-formats/structure/common/util.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/cube.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/dcd.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/gro.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/mmcif.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/mol.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/mol2.js +1 -2
- package/lib/commonjs/mol-model-formats/structure/pdb/anisotropic.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/assembly.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/atom-site.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/conect.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/entity.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/secondary-structure.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb/to-cif.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/pdb.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/anisotropic.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/assembly.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/atoms/chem_comp.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.d.ts +1 -1
- package/lib/commonjs/mol-model-formats/structure/property/bonds/chem_comp.js +7 -6
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.d.ts +1 -0
- package/lib/commonjs/mol-model-formats/structure/property/bonds/index-pair.js +2 -2
- package/lib/commonjs/mol-model-formats/structure/property/bonds/struct_conn.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/partial-charge.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/secondary-structure.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/property/symmetry.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/psf.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/sdf.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/util.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/xtc.js +0 -1
- package/lib/commonjs/mol-model-formats/structure/xyz.js +0 -1
- package/lib/commonjs/mol-model-formats/volume/ccp4.js +0 -1
- package/lib/commonjs/mol-model-formats/volume/cube.js +0 -1
- package/lib/commonjs/mol-model-formats/volume/density-server.js +0 -1
- package/lib/commonjs/mol-model-formats/volume/dsn6.js +0 -1
- package/lib/commonjs/mol-model-formats/volume/dx.js +0 -1
- package/lib/commonjs/mol-model-formats/volume/property.js +0 -1
- package/lib/commonjs/mol-model-props/common/custom-element-property.js +0 -1
- package/lib/commonjs/mol-model-props/common/custom-model-property.js +0 -1
- package/lib/commonjs/mol-model-props/common/custom-property.js +0 -1
- package/lib/commonjs/mol-model-props/common/custom-structure-property.js +0 -1
- package/lib/commonjs/mol-model-props/common/wrapper.js +0 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/area.js +0 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/common.js +0 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +0 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +0 -1
- package/lib/commonjs/mol-model-props/computed/accessible-surface-area.js +0 -1
- package/lib/commonjs/mol-model-props/computed/chemistry/functional-group.js +0 -1
- package/lib/commonjs/mol-model-props/computed/chemistry/geometry.js +0 -1
- package/lib/commonjs/mol-model-props/computed/chemistry/util.js +0 -1
- package/lib/commonjs/mol-model-props/computed/chemistry/valence-model.js +0 -1
- package/lib/commonjs/mol-model-props/computed/helix-orientation/helix-orientation.js +0 -1
- package/lib/commonjs/mol-model-props/computed/helix-orientation.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/charged.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/common.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/contacts-builder.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/contacts.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/features.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/halogen-bonds.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/hydrophobic.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/interactions.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/metal.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions/refine.js +0 -1
- package/lib/commonjs/mol-model-props/computed/interactions.js +0 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +0 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +0 -1
- package/lib/commonjs/mol-model-props/computed/representations/interactions.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/backbone-hbonds.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bends.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/bridges.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/common.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/dihedral-angles.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/helices.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/ladders.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/protein-info.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/sheets.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/trace-lookup.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp/turns.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/dssp.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure/zhang-skolnik.js +0 -1
- package/lib/commonjs/mol-model-props/computed/secondary-structure.js +0 -1
- package/lib/commonjs/mol-model-props/computed/themes/accessible-surface-area.js +0 -1
- package/lib/commonjs/mol-model-props/computed/themes/interaction-type.js +0 -1
- package/lib/commonjs/mol-model-props/computed/valence-model.js +0 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/color.js +0 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/format.js +0 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/property.js +0 -1
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.js +0 -1
- package/lib/commonjs/mol-model-props/integrative/pair-restraints.js +0 -1
- package/lib/commonjs/mol-model-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +7 -5
- package/lib/commonjs/mol-model-props/sequence/{best-database-mapping.js → sifts-mapping.js} +28 -26
- package/lib/{mol-model-props/sequence/themes/best-database-mapping.d.ts → commonjs/mol-model-props/sequence/themes/sifts-mapping.d.ts} +5 -5
- package/lib/commonjs/mol-model-props/sequence/themes/{best-database-mapping.js → sifts-mapping.js} +21 -22
- package/lib/commonjs/mol-plugin/animation-loop.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/behavior.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/camera.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.js → sifts-mapping.js} +10 -11
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/structure-info.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props.js +2 -3
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -5
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +2 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +16 -8
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js +10 -4
- package/lib/commonjs/mol-plugin/behavior/static/camera.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/static/misc.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/static/representation.js +0 -1
- package/lib/commonjs/mol-plugin/behavior/static/state.js +0 -1
- package/lib/commonjs/mol-plugin/behavior.js +0 -1
- package/lib/commonjs/mol-plugin/command.js +0 -1
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -0
- package/lib/commonjs/mol-plugin/commands.js +0 -1
- package/lib/commonjs/mol-plugin/config.js +0 -1
- package/lib/commonjs/mol-plugin/context.js +0 -1
- package/lib/commonjs/mol-plugin/features.js +0 -1
- package/lib/commonjs/mol-plugin/layout.js +0 -1
- package/lib/commonjs/mol-plugin/spec.js +0 -1
- package/lib/commonjs/mol-plugin/state.js +0 -1
- package/lib/commonjs/mol-plugin/util/substructure-parent-helper.js +0 -1
- package/lib/commonjs/mol-plugin/util/task-manager.js +0 -1
- package/lib/commonjs/mol-plugin/util/toast.js +0 -1
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.js +2 -3
- package/lib/commonjs/mol-plugin/version.js +0 -1
- package/lib/commonjs/mol-plugin-state/actions/file.js +0 -1
- package/lib/commonjs/mol-plugin-state/actions/structure.js +0 -1
- package/lib/commonjs/mol-plugin-state/actions/volume.js +0 -1
- package/lib/commonjs/mol-plugin-state/actions.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/assembly-unwind.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-rock.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/camera-spin.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/explode-units.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/spin-structure.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/state-interpolation.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/state-snapshots.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/helpers.js +0 -1
- package/lib/commonjs/mol-plugin-state/animation/model.js +0 -1
- package/lib/commonjs/mol-plugin-state/builder/data.js +0 -1
- package/lib/commonjs/mol-plugin-state/builder/preset-provider.js +0 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +0 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.js +0 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +128 -120
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.js +7 -34
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +2 -1
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.js +0 -1
- package/lib/commonjs/mol-plugin-state/builder/structure.js +0 -1
- package/lib/commonjs/mol-plugin-state/component.js +0 -1
- package/lib/commonjs/mol-plugin-state/formats/provider.js +0 -1
- package/lib/commonjs/mol-plugin-state/formats/registry.js +0 -1
- package/lib/commonjs/mol-plugin-state/formats/shape.js +0 -1
- package/lib/commonjs/mol-plugin-state/formats/structure.js +0 -1
- package/lib/commonjs/mol-plugin-state/formats/trajectory.js +0 -1
- package/lib/commonjs/mol-plugin-state/formats/volume.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-overpaint.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-query.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-representation-params.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-transparency.js +0 -1
- package/lib/commonjs/mol-plugin-state/helpers/volume-representation-params.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/animation.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/camera.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +5 -3
- package/lib/commonjs/mol-plugin-state/manager/interactivity.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/loci-label.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/snapshots.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +2 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +11 -9
- package/lib/commonjs/mol-plugin-state/manager/structure/focus.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy-state.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/hierarchy.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/measurement.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy-state.js +0 -1
- package/lib/commonjs/mol-plugin-state/manager/volume/hierarchy.js +0 -1
- package/lib/commonjs/mol-plugin-state/objects.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/data.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/helpers.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/misc.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/shape.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms/volume.js +0 -1
- package/lib/commonjs/mol-plugin-state/transforms.js +0 -1
- package/lib/commonjs/mol-plugin-ui/base.js +0 -1
- package/lib/commonjs/mol-plugin-ui/context.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/action-menu.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/color.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/common.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/icons.d.ts +2 -1
- package/lib/commonjs/mol-plugin-ui/controls/icons.js +8 -6
- package/lib/commonjs/mol-plugin-ui/controls/legend.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/line-graph-component.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/line-graph/point-component.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/screenshot.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls/slider.js +0 -1
- package/lib/commonjs/mol-plugin-ui/controls.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/controls.js +2 -2
- package/lib/commonjs/mol-plugin-ui/custom/volume.js +0 -1
- package/lib/commonjs/mol-plugin-ui/hooks/use-behavior.js +0 -1
- package/lib/commonjs/mol-plugin-ui/index.js +0 -1
- package/lib/commonjs/mol-plugin-ui/left-panel.js +0 -1
- package/lib/commonjs/mol-plugin-ui/plugin.js +0 -1
- package/lib/commonjs/mol-plugin-ui/sequence/chain.js +0 -1
- package/lib/commonjs/mol-plugin-ui/sequence/element.js +0 -1
- package/lib/commonjs/mol-plugin-ui/sequence/hetero.js +0 -1
- package/lib/commonjs/mol-plugin-ui/sequence/polymer.js +0 -1
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.d.ts +2 -2
- package/lib/commonjs/mol-plugin-ui/sequence/sequence.js +4 -6
- package/lib/commonjs/mol-plugin-ui/sequence/wrapper.js +0 -1
- package/lib/commonjs/mol-plugin-ui/sequence.js +0 -1
- package/lib/commonjs/mol-plugin-ui/spec.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/actions.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/animation.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/apply-action.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/common.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/snapshots.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/tree.js +0 -1
- package/lib/commonjs/mol-plugin-ui/state/update-transform.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/components.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/focus.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/generic.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/measurements.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/quick-styles.d.ts +25 -0
- package/lib/commonjs/mol-plugin-ui/structure/quick-styles.js +130 -0
- package/lib/commonjs/mol-plugin-ui/structure/selection.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/source.js +0 -1
- package/lib/commonjs/mol-plugin-ui/structure/superposition.d.ts +4 -1
- package/lib/commonjs/mol-plugin-ui/structure/superposition.js +66 -31
- package/lib/commonjs/mol-plugin-ui/structure/volume.js +4 -5
- package/lib/commonjs/mol-plugin-ui/task.js +0 -1
- package/lib/commonjs/mol-plugin-ui/toast.js +0 -1
- package/lib/commonjs/mol-plugin-ui/viewport/canvas.js +0 -1
- package/lib/commonjs/mol-plugin-ui/viewport/help.js +0 -1
- package/lib/commonjs/mol-plugin-ui/viewport/screenshot.js +0 -1
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +0 -1
- package/lib/commonjs/mol-plugin-ui/viewport.js +0 -1
- package/lib/commonjs/mol-repr/representation.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/angle.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/common.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/dihedral.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/distance.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/label.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/orientation.js +0 -1
- package/lib/commonjs/mol-repr/shape/loci/plane.js +0 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.js +0 -1
- package/lib/commonjs/mol-repr/shape/representation.js +0 -1
- package/lib/commonjs/mol-repr/structure/complex-representation.js +0 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.js +0 -1
- package/lib/commonjs/mol-repr/structure/params.js +0 -1
- package/lib/commonjs/mol-repr/structure/registry.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/registry.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/backbone.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/representation/cartoon.js +3 -4
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/label.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/representation/line.js +2 -3
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/point.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/putty.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation/spacefill.js +0 -1
- package/lib/commonjs/mol-repr/structure/representation.js +0 -1
- package/lib/commonjs/mol-repr/structure/units-representation.js +0 -1
- package/lib/commonjs/mol-repr/structure/units-visual.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +9 -3
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +9 -3
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/element-cross.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/element-point.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/bond.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/common.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +1 -1
- package/lib/commonjs/mol-repr/structure/visual/util/element.js +3 -32
- package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/link.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/nucleotide.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/backbone.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/curve-segment.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/gap-iterator.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer/trace-iterator.js +0 -1
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.js +0 -1
- package/lib/commonjs/mol-repr/util.js +0 -1
- package/lib/commonjs/mol-repr/visual.js +0 -1
- package/lib/commonjs/mol-repr/volume/direct-volume.js +0 -1
- package/lib/commonjs/mol-repr/volume/isosurface.js +0 -1
- package/lib/commonjs/mol-repr/volume/registry.js +0 -1
- package/lib/commonjs/mol-repr/volume/representation.js +0 -1
- package/lib/commonjs/mol-repr/volume/slice.js +0 -1
- package/lib/commonjs/mol-repr/volume/util.js +0 -1
- package/lib/commonjs/mol-script/compiler.js +0 -1
- package/lib/commonjs/mol-script/language/builder.js +0 -1
- package/lib/commonjs/mol-script/language/container.js +0 -1
- package/lib/commonjs/mol-script/language/expression-formatter.js +0 -1
- package/lib/commonjs/mol-script/language/expression.js +0 -1
- package/lib/commonjs/mol-script/language/helpers.js +0 -1
- package/lib/commonjs/mol-script/language/parser.js +0 -1
- package/lib/commonjs/mol-script/language/symbol-table/core.js +0 -1
- package/lib/commonjs/mol-script/language/symbol-table/internal.js +0 -1
- package/lib/commonjs/mol-script/language/symbol-table/structure-query.js +0 -1
- package/lib/commonjs/mol-script/language/symbol-table.js +0 -1
- package/lib/commonjs/mol-script/language/symbol.js +0 -1
- package/lib/commonjs/mol-script/language/type.js +0 -1
- package/lib/commonjs/mol-script/runtime/environment.js +0 -1
- package/lib/commonjs/mol-script/runtime/expression.js +0 -1
- package/lib/commonjs/mol-script/runtime/query/base.js +0 -1
- package/lib/commonjs/mol-script/runtime/query/compiler.js +0 -1
- package/lib/commonjs/mol-script/runtime/query/table.js +0 -1
- package/lib/commonjs/mol-script/runtime/runtime-macro.js +0 -1
- package/lib/commonjs/mol-script/runtime/symbol.js +0 -1
- package/lib/commonjs/mol-script/script/mol-script/examples.js +0 -1
- package/lib/commonjs/mol-script/script/mol-script/parser.js +0 -1
- package/lib/commonjs/mol-script/script/mol-script/script-macro.js +0 -1
- package/lib/commonjs/mol-script/script/mol-script/symbols.js +0 -1
- package/lib/commonjs/mol-script/script/parser.js +0 -1
- package/lib/commonjs/mol-script/script.js +0 -1
- package/lib/commonjs/mol-script/util/id-list.js +0 -1
- package/lib/commonjs/mol-state/action/manager.js +0 -1
- package/lib/commonjs/mol-state/action.js +0 -1
- package/lib/commonjs/mol-state/index.js +0 -1
- package/lib/commonjs/mol-state/object.js +0 -1
- package/lib/commonjs/mol-state/state/builder.js +0 -1
- package/lib/commonjs/mol-state/state/selection.js +0 -1
- package/lib/commonjs/mol-state/state.js +0 -1
- package/lib/commonjs/mol-state/transform.js +0 -1
- package/lib/commonjs/mol-state/transformer.js +0 -1
- package/lib/commonjs/mol-state/tree/immutable.js +0 -1
- package/lib/commonjs/mol-state/tree/spine.js +0 -1
- package/lib/commonjs/mol-state/tree/transient.js +0 -1
- package/lib/commonjs/mol-state/tree.js +0 -1
- package/lib/commonjs/mol-task/execution/observable.js +0 -1
- package/lib/commonjs/mol-task/execution/progress.js +0 -1
- package/lib/commonjs/mol-task/execution/runtime-context.js +0 -1
- package/lib/commonjs/mol-task/execution/synchronous.js +0 -1
- package/lib/commonjs/mol-task/index.js +0 -1
- package/lib/commonjs/mol-task/task.js +0 -1
- package/lib/commonjs/mol-task/util/chunked.js +0 -1
- package/lib/commonjs/mol-task/util/multistep.js +0 -1
- package/lib/commonjs/mol-task/util/scheduler.js +0 -1
- package/lib/commonjs/mol-task/util/user-timing.js +0 -1
- package/lib/commonjs/mol-theme/clipping.js +0 -1
- package/lib/commonjs/mol-theme/color/atom-id.js +0 -1
- package/lib/commonjs/mol-theme/color/carbohydrate-symbol.js +0 -1
- package/lib/commonjs/mol-theme/color/chain-id.js +0 -1
- package/lib/commonjs/mol-theme/color/element-index.js +0 -1
- package/lib/commonjs/mol-theme/color/element-symbol.js +0 -1
- package/lib/commonjs/mol-theme/color/entity-id.js +0 -1
- package/lib/commonjs/mol-theme/color/entity-source.js +0 -1
- package/lib/commonjs/mol-theme/color/hydrophobicity.js +0 -1
- package/lib/commonjs/mol-theme/color/illustrative.js +0 -1
- package/lib/commonjs/mol-theme/color/model-index.js +0 -1
- package/lib/commonjs/mol-theme/color/molecule-type.js +0 -1
- package/lib/commonjs/mol-theme/color/occupancy.js +0 -1
- package/lib/commonjs/mol-theme/color/operator-hkl.js +0 -1
- package/lib/commonjs/mol-theme/color/operator-name.js +0 -1
- package/lib/commonjs/mol-theme/color/partial-charge.js +0 -1
- package/lib/commonjs/mol-theme/color/polymer-id.js +0 -1
- package/lib/commonjs/mol-theme/color/polymer-index.js +0 -1
- package/lib/commonjs/mol-theme/color/residue-name.js +0 -1
- package/lib/commonjs/mol-theme/color/secondary-structure.js +0 -1
- package/lib/commonjs/mol-theme/color/sequence-id.js +0 -1
- package/lib/commonjs/mol-theme/color/shape-group.js +0 -1
- package/lib/commonjs/mol-theme/color/uncertainty.js +0 -1
- package/lib/commonjs/mol-theme/color/uniform.js +0 -1
- package/lib/commonjs/mol-theme/color/unit-index.js +0 -1
- package/lib/commonjs/mol-theme/color/volume-value.js +0 -1
- package/lib/commonjs/mol-theme/color.js +0 -1
- package/lib/commonjs/mol-theme/label.js +0 -1
- package/lib/commonjs/mol-theme/overpaint.js +0 -1
- package/lib/commonjs/mol-theme/size/physical.js +0 -1
- package/lib/commonjs/mol-theme/size/shape-group.js +0 -1
- package/lib/commonjs/mol-theme/size/uncertainty.js +0 -1
- package/lib/commonjs/mol-theme/size/uniform.js +0 -1
- package/lib/commonjs/mol-theme/size.js +0 -1
- package/lib/commonjs/mol-theme/substance.js +0 -1
- package/lib/commonjs/mol-theme/theme.js +0 -1
- package/lib/commonjs/mol-theme/transparency.js +0 -1
- package/lib/commonjs/mol-util/array.js +0 -1
- package/lib/commonjs/mol-util/assets.js +0 -1
- package/lib/commonjs/mol-util/async-queue.js +0 -1
- package/lib/commonjs/mol-util/binding.js +0 -1
- package/lib/commonjs/mol-util/bit-flags.js +0 -1
- package/lib/commonjs/mol-util/clip.js +0 -1
- package/lib/commonjs/mol-util/color/color.js +0 -1
- package/lib/commonjs/mol-util/color/distinct.js +0 -1
- package/lib/commonjs/mol-util/color/index.js +0 -1
- package/lib/commonjs/mol-util/color/lists.js +0 -1
- package/lib/commonjs/mol-util/color/names.js +0 -1
- package/lib/commonjs/mol-util/color/palette.js +0 -1
- package/lib/commonjs/mol-util/color/params.js +0 -1
- package/lib/commonjs/mol-util/color/scale.js +0 -1
- package/lib/commonjs/mol-util/color/spaces/hcl.js +0 -1
- package/lib/commonjs/mol-util/color/spaces/lab.js +0 -1
- package/lib/commonjs/mol-util/color/swatches.js +0 -1
- package/lib/commonjs/mol-util/console-logger.js +0 -1
- package/lib/commonjs/mol-util/data-source.js +0 -1
- package/lib/commonjs/mol-util/date.js +0 -1
- package/lib/commonjs/mol-util/debug.js +0 -1
- package/lib/commonjs/mol-util/download.js +0 -1
- package/lib/commonjs/mol-util/file-info.js +0 -1
- package/lib/commonjs/mol-util/graphql-client.js +0 -1
- package/lib/commonjs/mol-util/id-factory.js +0 -1
- package/lib/commonjs/mol-util/image.js +0 -1
- package/lib/commonjs/mol-util/index.js +0 -1
- package/lib/commonjs/mol-util/input/event-offset.js +0 -1
- package/lib/commonjs/mol-util/input/input-observer.js +0 -1
- package/lib/commonjs/mol-util/is-little-endian.js +0 -1
- package/lib/commonjs/mol-util/legend.js +0 -1
- package/lib/commonjs/mol-util/log-entry.js +0 -1
- package/lib/commonjs/mol-util/lru-cache.js +0 -1
- package/lib/commonjs/mol-util/make-dir.js +0 -1
- package/lib/commonjs/mol-util/map.js +0 -1
- package/lib/commonjs/mol-util/marker-action.js +0 -1
- package/lib/commonjs/mol-util/mask.js +0 -1
- package/lib/commonjs/mol-util/material.js +0 -1
- package/lib/commonjs/mol-util/memoize.js +0 -1
- package/lib/commonjs/mol-util/monadic-parser.js +0 -1
- package/lib/commonjs/mol-util/now.js +0 -1
- package/lib/commonjs/mol-util/number-packing.js +0 -1
- package/lib/commonjs/mol-util/number.js +0 -1
- package/lib/commonjs/mol-util/object.js +0 -1
- package/lib/commonjs/mol-util/param-definition.js +0 -1
- package/lib/commonjs/mol-util/param-mapping.js +0 -1
- package/lib/commonjs/mol-util/performance-monitor.js +0 -1
- package/lib/commonjs/mol-util/polyfill.js +0 -1
- package/lib/commonjs/mol-util/read.js +0 -1
- package/lib/commonjs/mol-util/reference-cache.js +0 -1
- package/lib/commonjs/mol-util/retry-if.js +0 -1
- package/lib/commonjs/mol-util/rx-event-helper.js +0 -1
- package/lib/commonjs/mol-util/set.js +0 -1
- package/lib/commonjs/mol-util/sleep.js +0 -1
- package/lib/commonjs/mol-util/string-builder.js +0 -1
- package/lib/commonjs/mol-util/string.js +0 -1
- package/lib/commonjs/mol-util/type-helpers.js +0 -1
- package/lib/commonjs/mol-util/url.js +0 -1
- package/lib/commonjs/mol-util/uuid.js +0 -1
- package/lib/commonjs/mol-util/value-cell.js +0 -1
- package/lib/commonjs/mol-util/zip/bin.js +0 -1
- package/lib/commonjs/mol-util/zip/checksum.js +0 -1
- package/lib/commonjs/mol-util/zip/deflate.js +0 -1
- package/lib/commonjs/mol-util/zip/huffman.js +0 -1
- package/lib/commonjs/mol-util/zip/inflate.js +0 -1
- package/lib/commonjs/mol-util/zip/util.js +0 -1
- package/lib/commonjs/mol-util/zip/zip.js +0 -1
- package/lib/commonjs/servers/common/file-handle.js +0 -1
- package/lib/commonjs/servers/common/swagger-ui/index.js +0 -1
- package/lib/commonjs/servers/common/swagger-ui/indexTemplate.js +0 -1
- package/lib/commonjs/servers/common/util.js +0 -1
- package/lib/commonjs/servers/model/config.js +0 -1
- package/lib/commonjs/servers/model/preprocess/converter.js +0 -1
- package/lib/commonjs/servers/model/preprocess/master.js +0 -1
- package/lib/commonjs/servers/model/preprocess/parallel.js +0 -1
- package/lib/commonjs/servers/model/preprocess/preprocess.js +0 -1
- package/lib/commonjs/servers/model/preprocess/util.js +0 -1
- package/lib/commonjs/servers/model/preprocess.js +0 -1
- package/lib/commonjs/servers/model/properties/pdbe.js +0 -1
- package/lib/commonjs/servers/model/properties/providers/pdbe.js +0 -1
- package/lib/commonjs/servers/model/properties/providers/wwpdb.js +0 -1
- package/lib/commonjs/servers/model/properties/wwpdb.js +0 -1
- package/lib/commonjs/servers/model/property-provider.js +0 -1
- package/lib/commonjs/servers/model/query/atoms.js +0 -1
- package/lib/commonjs/servers/model/query/schemas.js +0 -1
- package/lib/commonjs/servers/model/query.js +0 -1
- package/lib/commonjs/servers/model/server/api-local.js +0 -1
- package/lib/commonjs/servers/model/server/api-schema.js +0 -1
- package/lib/commonjs/servers/model/server/api-web-multiple.js +0 -1
- package/lib/commonjs/servers/model/server/api-web.js +0 -1
- package/lib/commonjs/servers/model/server/api.js +0 -1
- package/lib/commonjs/servers/model/server/cache.js +0 -1
- package/lib/commonjs/servers/model/server/jobs.js +0 -1
- package/lib/commonjs/servers/model/server/query.js +0 -1
- package/lib/commonjs/servers/model/server/structure-wrapper.js +0 -1
- package/lib/commonjs/servers/model/server.js +0 -1
- package/lib/commonjs/servers/model/test.js +0 -1
- package/lib/commonjs/servers/model/utils/fetch-props-pdbe.js +0 -1
- package/lib/commonjs/servers/model/utils/fetch-retry.js +0 -1
- package/lib/commonjs/servers/model/utils/tar.js +0 -1
- package/lib/commonjs/servers/model/utils/writer.js +0 -1
- package/lib/commonjs/servers/model/version.js +0 -1
- package/lib/commonjs/servers/plugin-state/api-schema.js +0 -1
- package/lib/commonjs/servers/plugin-state/config.js +0 -1
- package/lib/commonjs/servers/plugin-state/index.js +0 -1
- package/lib/commonjs/servers/plugin-state/version.js +0 -1
- package/lib/commonjs/servers/volume/common/binary-schema.js +0 -1
- package/lib/commonjs/servers/volume/common/data-format.js +0 -1
- package/lib/commonjs/servers/volume/common/file.js +0 -1
- package/lib/commonjs/servers/volume/config.js +0 -1
- package/lib/commonjs/servers/volume/pack/data-model.js +0 -1
- package/lib/commonjs/servers/volume/pack/downsampling.js +0 -1
- package/lib/commonjs/servers/volume/pack/format/ccp4.js +0 -1
- package/lib/commonjs/servers/volume/pack/format/dsn6.js +0 -1
- package/lib/commonjs/servers/volume/pack/format.js +0 -1
- package/lib/commonjs/servers/volume/pack/main.js +0 -1
- package/lib/commonjs/servers/volume/pack/sampling.js +0 -1
- package/lib/commonjs/servers/volume/pack/version.js +0 -1
- package/lib/commonjs/servers/volume/pack/writer.js +0 -1
- package/lib/commonjs/servers/volume/pack.js +0 -1
- package/lib/commonjs/servers/volume/query.js +0 -1
- package/lib/commonjs/servers/volume/server/algebra/box.js +0 -1
- package/lib/commonjs/servers/volume/server/algebra/coordinate.js +0 -1
- package/lib/commonjs/servers/volume/server/api.js +0 -1
- package/lib/commonjs/servers/volume/server/local-api.js +0 -1
- package/lib/commonjs/servers/volume/server/query/compose.js +0 -1
- package/lib/commonjs/servers/volume/server/query/data-model.js +0 -1
- package/lib/commonjs/servers/volume/server/query/encode.js +0 -1
- package/lib/commonjs/servers/volume/server/query/execute.js +0 -1
- package/lib/commonjs/servers/volume/server/query/identify.js +0 -1
- package/lib/commonjs/servers/volume/server/state.js +0 -1
- package/lib/commonjs/servers/volume/server/version.js +0 -1
- package/lib/commonjs/servers/volume/server/web-api.js +0 -1
- package/lib/commonjs/servers/volume/server/web-schema.js +0 -1
- package/lib/commonjs/servers/volume/server.js +0 -1
- package/lib/examples/alpha-orbitals/controls.js +0 -1
- package/lib/examples/alpha-orbitals/example-data.js +0 -1
- package/lib/examples/alpha-orbitals/index.js +0 -1
- package/lib/examples/basic-wrapper/coloring.js +0 -1
- package/lib/examples/basic-wrapper/controls.js +0 -1
- package/lib/examples/basic-wrapper/custom-theme.js +0 -1
- package/lib/examples/basic-wrapper/index.js +0 -1
- package/lib/examples/basic-wrapper/superposition.js +0 -1
- package/lib/examples/domain-annotation-server/mapping.js +0 -1
- package/lib/examples/domain-annotation-server/schemas.js +0 -1
- package/lib/examples/domain-annotation-server/server.js +0 -1
- package/lib/examples/domain-annotation-server/test.js +0 -1
- package/lib/examples/lighting/index.js +2 -3
- package/lib/examples/proteopedia-wrapper/annotation.js +0 -1
- package/lib/examples/proteopedia-wrapper/coloring.js +0 -1
- package/lib/examples/proteopedia-wrapper/helpers.js +0 -1
- package/lib/examples/proteopedia-wrapper/index.js +0 -1
- package/lib/examples/proteopedia-wrapper/ui/controls.js +0 -1
- package/lib/examples/task.js +0 -1
- package/lib/extensions/alpha-orbitals/collocation.js +0 -1
- package/lib/extensions/alpha-orbitals/data-model.js +0 -1
- package/lib/extensions/alpha-orbitals/density.js +0 -1
- package/lib/extensions/alpha-orbitals/gpu/compute.js +0 -1
- package/lib/extensions/alpha-orbitals/gpu/shader.frag.js +0 -1
- package/lib/extensions/alpha-orbitals/orbitals.js +0 -1
- package/lib/extensions/alpha-orbitals/spherical-functions.js +0 -1
- package/lib/extensions/alpha-orbitals/transforms.js +0 -1
- package/lib/extensions/anvil/algorithm.js +0 -1
- package/lib/extensions/anvil/behavior.d.ts +1 -0
- package/lib/extensions/anvil/behavior.js +0 -1
- package/lib/extensions/anvil/prop.js +0 -1
- package/lib/extensions/anvil/representation.js +0 -1
- package/lib/extensions/cellpack/color/generate.js +0 -1
- package/lib/extensions/cellpack/color/provided.js +0 -1
- package/lib/extensions/cellpack/curve.js +0 -1
- package/lib/extensions/cellpack/data.js +0 -1
- package/lib/extensions/cellpack/index.js +0 -1
- package/lib/extensions/cellpack/model.js +0 -1
- package/lib/extensions/cellpack/preset.js +0 -1
- package/lib/extensions/cellpack/property.js +0 -1
- package/lib/extensions/cellpack/representation.js +0 -1
- package/lib/extensions/cellpack/state.js +0 -1
- package/lib/extensions/cellpack/util.js +0 -1
- package/lib/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -0
- package/lib/extensions/dnatco/confal-pyramids/behavior.js +0 -1
- package/lib/extensions/dnatco/confal-pyramids/color.js +0 -1
- package/lib/extensions/dnatco/confal-pyramids/property.js +0 -1
- package/lib/extensions/dnatco/confal-pyramids/representation.js +0 -1
- package/lib/extensions/dnatco/confal-pyramids/types.js +0 -1
- package/lib/extensions/dnatco/confal-pyramids/util.js +0 -1
- package/lib/extensions/dnatco/index.js +0 -1
- package/lib/extensions/g3d/data.js +0 -1
- package/lib/extensions/g3d/format.js +0 -1
- package/lib/extensions/g3d/model.js +0 -1
- package/lib/extensions/geo-export/controls.js +0 -1
- package/lib/extensions/geo-export/glb-exporter.js +0 -1
- package/lib/extensions/geo-export/index.js +0 -1
- package/lib/extensions/geo-export/mesh-exporter.js +0 -1
- package/lib/extensions/geo-export/obj-exporter.js +0 -1
- package/lib/extensions/geo-export/render-object-exporter.js +0 -1
- package/lib/extensions/geo-export/stl-exporter.js +0 -1
- package/lib/extensions/geo-export/ui.js +0 -1
- package/lib/extensions/geo-export/usdz-exporter.js +0 -1
- package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +2 -0
- package/lib/extensions/model-archive/quality-assessment/behavior.js +0 -1
- package/lib/extensions/model-archive/quality-assessment/color/plddt.js +0 -1
- package/lib/extensions/model-archive/quality-assessment/color/qmean.js +0 -1
- package/lib/extensions/model-archive/quality-assessment/prop.js +0 -1
- package/lib/extensions/model-export/export.js +0 -1
- package/lib/extensions/model-export/index.js +0 -1
- package/lib/extensions/model-export/ui.js +0 -1
- package/lib/extensions/mp4-export/controls.js +0 -1
- package/lib/extensions/mp4-export/encoder.js +0 -1
- package/lib/extensions/mp4-export/index.js +0 -1
- package/lib/extensions/mp4-export/ui.js +0 -1
- package/lib/extensions/pdbe/index.js +0 -1
- package/lib/extensions/pdbe/preferred-assembly.js +0 -1
- package/lib/extensions/pdbe/struct-ref-domain.js +0 -1
- package/lib/extensions/pdbe/structure-quality-report/behavior.js +0 -1
- package/lib/extensions/pdbe/structure-quality-report/color.js +0 -1
- package/lib/extensions/pdbe/structure-quality-report/prop.js +0 -1
- package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +2 -0
- package/lib/extensions/rcsb/assembly-symmetry/behavior.js +0 -1
- package/lib/extensions/rcsb/assembly-symmetry/color.js +0 -1
- package/lib/extensions/rcsb/assembly-symmetry/prop.js +0 -1
- package/lib/extensions/rcsb/assembly-symmetry/representation.js +0 -1
- package/lib/extensions/rcsb/assembly-symmetry/ui.js +0 -1
- package/lib/extensions/rcsb/graphql/symmetry.gql.js +0 -1
- package/lib/extensions/rcsb/graphql/types.d.ts +169 -12
- package/lib/extensions/rcsb/graphql/types.js +0 -1
- package/lib/extensions/rcsb/index.js +0 -1
- package/lib/extensions/rcsb/validation-report/behavior.d.ts +3 -0
- package/lib/extensions/rcsb/validation-report/behavior.js +0 -1
- package/lib/extensions/rcsb/validation-report/color/density-fit.js +0 -1
- package/lib/extensions/rcsb/validation-report/color/geometry-quality.js +0 -1
- package/lib/extensions/rcsb/validation-report/color/random-coil-index.js +0 -1
- package/lib/extensions/rcsb/validation-report/prop.js +0 -1
- package/lib/extensions/rcsb/validation-report/representation.js +0 -1
- package/lib/mol-canvas3d/camera/stereo.js +0 -1
- package/lib/mol-canvas3d/camera/transition.js +0 -1
- package/lib/mol-canvas3d/camera/util.js +0 -1
- package/lib/mol-canvas3d/camera.js +0 -1
- package/lib/mol-canvas3d/canvas3d.d.ts +3 -1
- package/lib/mol-canvas3d/canvas3d.js +32 -25
- package/lib/mol-canvas3d/controls/object.js +0 -1
- package/lib/mol-canvas3d/controls/trackball.js +0 -1
- package/lib/mol-canvas3d/helper/bounding-sphere-helper.js +0 -1
- package/lib/mol-canvas3d/helper/camera-helper.js +0 -1
- package/lib/mol-canvas3d/helper/handle-helper.js +0 -1
- package/lib/mol-canvas3d/helper/helper.js +0 -1
- package/lib/mol-canvas3d/helper/interaction-events.js +0 -1
- package/lib/mol-canvas3d/passes/draw.js +12 -10
- package/lib/mol-canvas3d/passes/fxaa.js +0 -1
- package/lib/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/mol-canvas3d/passes/image.js +0 -1
- package/lib/mol-canvas3d/passes/marking.js +0 -1
- package/lib/mol-canvas3d/passes/multi-sample.d.ts +1 -1
- package/lib/mol-canvas3d/passes/multi-sample.js +20 -7
- package/lib/mol-canvas3d/passes/passes.js +0 -1
- package/lib/mol-canvas3d/passes/pick.js +0 -1
- package/lib/mol-canvas3d/passes/postprocessing.d.ts +8 -1
- package/lib/mol-canvas3d/passes/postprocessing.js +51 -22
- package/lib/mol-canvas3d/passes/smaa.js +0 -1
- package/lib/mol-canvas3d/passes/wboit.js +0 -1
- package/lib/mol-canvas3d/util.js +0 -1
- package/lib/mol-data/db/column-helpers.js +0 -1
- package/lib/mol-data/db/column.js +0 -1
- package/lib/mol-data/db/database.js +0 -1
- package/lib/mol-data/db/table.js +0 -1
- package/lib/mol-data/db.js +0 -1
- package/lib/mol-data/generic/hash-set.js +0 -1
- package/lib/mol-data/generic/linked-list.js +0 -1
- package/lib/mol-data/generic/unique-array.js +0 -1
- package/lib/mol-data/generic.js +0 -1
- package/lib/mol-data/index.js +0 -1
- package/lib/mol-data/int/impl/interval.js +0 -1
- package/lib/mol-data/int/impl/ordered-set.js +0 -1
- package/lib/mol-data/int/impl/segmentation.js +0 -1
- package/lib/mol-data/int/impl/sorted-array.js +0 -1
- package/lib/mol-data/int/interval.js +0 -1
- package/lib/mol-data/int/linked-index.js +0 -1
- package/lib/mol-data/int/map.js +0 -1
- package/lib/mol-data/int/ordered-set.js +0 -1
- package/lib/mol-data/int/segmentation.js +0 -1
- package/lib/mol-data/int/sorted-array.js +0 -1
- package/lib/mol-data/int/sorted-ranges.js +0 -1
- package/lib/mol-data/int/tuple.js +0 -1
- package/lib/mol-data/int.js +0 -1
- package/lib/mol-data/iterator.js +0 -1
- package/lib/mol-data/util/array.js +0 -1
- package/lib/mol-data/util/buckets.js +0 -1
- package/lib/mol-data/util/chunked-array.js +0 -1
- package/lib/mol-data/util/combination.js +0 -1
- package/lib/mol-data/util/equivalence-classes.js +0 -1
- package/lib/mol-data/util/grouping.js +0 -1
- package/lib/mol-data/util/hash-functions.js +0 -1
- package/lib/mol-data/util/interval-iterator.js +0 -1
- package/lib/mol-data/util/sort.js +0 -1
- package/lib/mol-data/util.js +0 -1
- package/lib/mol-geo/geometry/base.js +0 -1
- package/lib/mol-geo/geometry/clipping-data.js +0 -1
- package/lib/mol-geo/geometry/color-data.js +0 -1
- package/lib/mol-geo/geometry/cylinders/cylinders-builder.js +0 -1
- package/lib/mol-geo/geometry/cylinders/cylinders.js +0 -1
- package/lib/mol-geo/geometry/direct-volume/direct-volume.js +0 -1
- package/lib/mol-geo/geometry/direct-volume/transfer-function.js +0 -1
- package/lib/mol-geo/geometry/geometry.js +0 -1
- package/lib/mol-geo/geometry/image/image.js +0 -1
- package/lib/mol-geo/geometry/lines/lines-builder.js +0 -1
- package/lib/mol-geo/geometry/lines/lines.d.ts +1 -1
- package/lib/mol-geo/geometry/lines/lines.js +2 -3
- package/lib/mol-geo/geometry/marker-data.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/axes.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/box.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/cylinder.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/ellipsoid.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/ribbon.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/sheet.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/sphere.js +0 -1
- package/lib/mol-geo/geometry/mesh/builder/tube.js +0 -1
- package/lib/mol-geo/geometry/mesh/color-smoothing.js +0 -1
- package/lib/mol-geo/geometry/mesh/laplacian-smoothing.js +0 -1
- package/lib/mol-geo/geometry/mesh/mesh-builder.js +0 -1
- package/lib/mol-geo/geometry/mesh/mesh.js +0 -1
- package/lib/mol-geo/geometry/overpaint-data.js +0 -1
- package/lib/mol-geo/geometry/picking.js +0 -1
- package/lib/mol-geo/geometry/points/points-builder.js +0 -1
- package/lib/mol-geo/geometry/points/points.js +0 -1
- package/lib/mol-geo/geometry/size-data.js +0 -1
- package/lib/mol-geo/geometry/spheres/spheres-builder.js +0 -1
- package/lib/mol-geo/geometry/spheres/spheres.js +0 -1
- package/lib/mol-geo/geometry/substance-data.js +0 -1
- package/lib/mol-geo/geometry/text/font-atlas.js +0 -1
- package/lib/mol-geo/geometry/text/text-builder.js +0 -1
- package/lib/mol-geo/geometry/text/text.js +0 -1
- package/lib/mol-geo/geometry/texture-mesh/color-smoothing.js +0 -1
- package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +0 -1
- package/lib/mol-geo/geometry/transform-data.js +0 -1
- package/lib/mol-geo/geometry/transparency-data.js +0 -1
- package/lib/mol-geo/primitive/box.js +0 -1
- package/lib/mol-geo/primitive/cage.js +0 -1
- package/lib/mol-geo/primitive/circle.js +0 -1
- package/lib/mol-geo/primitive/cylinder.js +0 -1
- package/lib/mol-geo/primitive/dodecahedron.js +0 -1
- package/lib/mol-geo/primitive/icosahedron.js +0 -1
- package/lib/mol-geo/primitive/octahedron.js +0 -1
- package/lib/mol-geo/primitive/plane.js +0 -1
- package/lib/mol-geo/primitive/polygon.js +0 -1
- package/lib/mol-geo/primitive/polyhedron.js +0 -1
- package/lib/mol-geo/primitive/primitive.js +0 -1
- package/lib/mol-geo/primitive/prism.js +0 -1
- package/lib/mol-geo/primitive/pyramid.js +0 -1
- package/lib/mol-geo/primitive/sphere.js +0 -1
- package/lib/mol-geo/primitive/spiked-ball.js +0 -1
- package/lib/mol-geo/primitive/star.js +0 -1
- package/lib/mol-geo/primitive/tetrahedron.js +0 -1
- package/lib/mol-geo/primitive/torus.js +0 -1
- package/lib/mol-geo/primitive/wedge.js +0 -1
- package/lib/mol-geo/util/location-iterator.js +0 -1
- package/lib/mol-geo/util/marching-cubes/algorithm.js +0 -1
- package/lib/mol-geo/util/marching-cubes/builder.js +0 -1
- package/lib/mol-geo/util/marching-cubes/tables.js +0 -1
- package/lib/mol-geo/util.js +0 -1
- package/lib/mol-gl/commit-queue.js +0 -1
- package/lib/mol-gl/compute/grid3d.js +0 -1
- package/lib/mol-gl/compute/histogram-pyramid/reduction.js +0 -1
- package/lib/mol-gl/compute/histogram-pyramid/sum.js +0 -1
- package/lib/mol-gl/compute/marching-cubes/active-voxels.js +0 -1
- package/lib/mol-gl/compute/marching-cubes/isosurface.js +0 -1
- package/lib/mol-gl/compute/marching-cubes/tables.js +0 -1
- package/lib/mol-gl/compute/util.js +0 -1
- package/lib/mol-gl/object3d.js +0 -1
- package/lib/mol-gl/render-object.js +0 -1
- package/lib/mol-gl/renderable/cylinders.js +0 -1
- package/lib/mol-gl/renderable/direct-volume.js +0 -1
- package/lib/mol-gl/renderable/image.js +0 -1
- package/lib/mol-gl/renderable/lines.js +0 -1
- package/lib/mol-gl/renderable/mesh.js +0 -1
- package/lib/mol-gl/renderable/points.js +0 -1
- package/lib/mol-gl/renderable/schema.js +0 -1
- package/lib/mol-gl/renderable/spheres.js +0 -1
- package/lib/mol-gl/renderable/text.js +0 -1
- package/lib/mol-gl/renderable/texture-mesh.js +0 -1
- package/lib/mol-gl/renderable/util.js +0 -1
- package/lib/mol-gl/renderable.js +0 -1
- package/lib/mol-gl/renderer.js +3 -5
- package/lib/mol-gl/scene.d.ts +2 -1
- package/lib/mol-gl/scene.js +14 -3
- package/lib/mol-gl/shader/chunks/apply-fog.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/apply-interior-color.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +2 -2
- package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +2 -3
- package/lib/mol-gl/shader/chunks/apply-marker-color.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-clipping-varying.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-group.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-position.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/assign-size.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/check-picking-alpha.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/clip-instance.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/clip-pixel.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/common-clip.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/common-vert-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/common.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/float-to-rgba.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/light-frag-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/matrix-scale.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/normal-frag-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/read-from-texture.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/rgba-to-float.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/size-vert-params.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/texture3d-from-1d-trilinear.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/texture3d-from-2d-linear.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/texture3d-from-2d-nearest.glsl.js +0 -1
- package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +0 -1
- package/lib/mol-gl/shader/compose.frag.js +0 -1
- package/lib/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +0 -1
- package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +0 -1
- package/lib/mol-gl/shader/compute/color-smoothing/normalize.frag.js +0 -1
- package/lib/mol-gl/shader/copy.frag.js +0 -1
- package/lib/mol-gl/shader/cylinders.frag.d.ts +2 -2
- package/lib/mol-gl/shader/cylinders.frag.js +2 -3
- package/lib/mol-gl/shader/cylinders.vert.js +0 -1
- package/lib/mol-gl/shader/depth-merge.frag.js +0 -1
- package/lib/mol-gl/shader/direct-volume.frag.d.ts +2 -2
- package/lib/mol-gl/shader/direct-volume.frag.js +2 -3
- package/lib/mol-gl/shader/direct-volume.vert.js +0 -1
- package/lib/mol-gl/shader/evaluate-wboit.frag.js +0 -1
- package/lib/mol-gl/shader/fxaa.frag.js +0 -1
- package/lib/mol-gl/shader/gaussian-density.frag.js +0 -1
- package/lib/mol-gl/shader/gaussian-density.vert.js +0 -1
- package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.js +0 -1
- package/lib/mol-gl/shader/histogram-pyramid/sum.frag.js +0 -1
- package/lib/mol-gl/shader/image.frag.js +0 -1
- package/lib/mol-gl/shader/image.vert.js +0 -1
- package/lib/mol-gl/shader/lines.frag.js +0 -1
- package/lib/mol-gl/shader/lines.vert.js +0 -1
- package/lib/mol-gl/shader/marching-cubes/active-voxels.frag.js +0 -1
- package/lib/mol-gl/shader/marching-cubes/isosurface.frag.js +0 -1
- package/lib/mol-gl/shader/marking/edge.frag.js +0 -1
- package/lib/mol-gl/shader/marking/overlay.frag.js +0 -1
- package/lib/mol-gl/shader/mesh.frag.d.ts +2 -2
- package/lib/mol-gl/shader/mesh.frag.js +2 -3
- package/lib/mol-gl/shader/mesh.vert.js +0 -1
- package/lib/mol-gl/shader/outlines.frag.js +0 -1
- package/lib/mol-gl/shader/points.frag.js +0 -1
- package/lib/mol-gl/shader/points.vert.js +0 -1
- package/lib/mol-gl/shader/postprocessing.frag.d.ts +2 -2
- package/lib/mol-gl/shader/postprocessing.frag.js +2 -3
- package/lib/mol-gl/shader/quad.vert.js +0 -1
- package/lib/mol-gl/shader/smaa/blend.frag.js +0 -1
- package/lib/mol-gl/shader/smaa/blend.vert.js +0 -1
- package/lib/mol-gl/shader/smaa/edges.frag.js +0 -1
- package/lib/mol-gl/shader/smaa/edges.vert.js +0 -1
- package/lib/mol-gl/shader/smaa/weights.frag.js +0 -1
- package/lib/mol-gl/shader/smaa/weights.vert.js +0 -1
- package/lib/mol-gl/shader/spheres.frag.d.ts +2 -2
- package/lib/mol-gl/shader/spheres.frag.js +2 -3
- package/lib/mol-gl/shader/spheres.vert.js +0 -1
- package/lib/mol-gl/shader/ssao-blur.frag.js +0 -1
- package/lib/mol-gl/shader/ssao.frag.js +0 -1
- package/lib/mol-gl/shader/text.frag.js +0 -1
- package/lib/mol-gl/shader/text.vert.js +0 -1
- package/lib/mol-gl/shader/util/grid3d-template.frag.js +0 -1
- package/lib/mol-gl/shader-code.js +0 -1
- package/lib/mol-gl/webgl/buffer.js +0 -1
- package/lib/mol-gl/webgl/compat.js +0 -1
- package/lib/mol-gl/webgl/context.js +0 -1
- package/lib/mol-gl/webgl/extensions.js +0 -1
- package/lib/mol-gl/webgl/framebuffer.js +0 -1
- package/lib/mol-gl/webgl/program.js +0 -1
- package/lib/mol-gl/webgl/render-item.js +0 -1
- package/lib/mol-gl/webgl/render-target.js +0 -1
- package/lib/mol-gl/webgl/renderbuffer.js +0 -1
- package/lib/mol-gl/webgl/resources.js +0 -1
- package/lib/mol-gl/webgl/shader.js +0 -1
- package/lib/mol-gl/webgl/state.js +0 -1
- package/lib/mol-gl/webgl/texture.d.ts +1 -1
- package/lib/mol-gl/webgl/texture.js +9 -2
- package/lib/mol-gl/webgl/uniform.js +0 -1
- package/lib/mol-gl/webgl/vertex-array.js +0 -1
- package/lib/mol-io/common/ascii.js +0 -1
- package/lib/mol-io/common/binary-cif/array-encoder.js +0 -1
- package/lib/mol-io/common/binary-cif/classifier.js +0 -1
- package/lib/mol-io/common/binary-cif/decoder.js +0 -1
- package/lib/mol-io/common/binary-cif/encoding.js +0 -1
- package/lib/mol-io/common/binary-cif.js +0 -1
- package/lib/mol-io/common/binary.js +0 -1
- package/lib/mol-io/common/file-handle.js +0 -1
- package/lib/mol-io/common/msgpack/decode.js +0 -1
- package/lib/mol-io/common/msgpack/encode.js +0 -1
- package/lib/mol-io/common/simple-buffer.js +0 -1
- package/lib/mol-io/common/typed-array.js +0 -1
- package/lib/mol-io/common/utf8.js +0 -1
- package/lib/mol-io/reader/ccp4/parser.js +0 -1
- package/lib/mol-io/reader/ccp4/schema.js +0 -1
- package/lib/mol-io/reader/cif/binary/field.js +0 -1
- package/lib/mol-io/reader/cif/binary/parser.js +0 -1
- package/lib/mol-io/reader/cif/data-model.js +0 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -2
- package/lib/mol-io/reader/cif/schema/ccd-extras.js +0 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -2
- package/lib/mol-io/reader/cif/schema/cif-core.js +0 -1
- package/lib/mol-io/reader/cif/schema/ddl.js +0 -1
- package/lib/mol-io/reader/cif/schema/density-server.js +0 -1
- package/lib/mol-io/reader/cif/schema/dic.js +0 -1
- package/lib/mol-io/reader/cif/schema/mmcif-extras.js +0 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +28 -2
- package/lib/mol-io/reader/cif/schema/mmcif.js +27 -2
- package/lib/mol-io/reader/cif/schema.js +0 -1
- package/lib/mol-io/reader/cif/text/parser.js +0 -1
- package/lib/mol-io/reader/cif.js +0 -1
- package/lib/mol-io/reader/common/binary/column.js +0 -1
- package/lib/mol-io/reader/common/text/column/fixed.js +0 -1
- package/lib/mol-io/reader/common/text/column/token.js +0 -1
- package/lib/mol-io/reader/common/text/number-parser.js +0 -1
- package/lib/mol-io/reader/common/text/tokenizer.js +0 -1
- package/lib/mol-io/reader/csv/data-model.js +0 -1
- package/lib/mol-io/reader/csv/field.js +0 -1
- package/lib/mol-io/reader/csv/parser.js +0 -1
- package/lib/mol-io/reader/csv/schema.js +0 -1
- package/lib/mol-io/reader/cube/parser.js +0 -1
- package/lib/mol-io/reader/dcd/parser.js +0 -1
- package/lib/mol-io/reader/dsn6/parser.js +0 -1
- package/lib/mol-io/reader/dsn6/schema.js +0 -1
- package/lib/mol-io/reader/dx/parser.js +0 -1
- package/lib/mol-io/reader/gro/parser.js +0 -1
- package/lib/mol-io/reader/mol/parser.js +0 -1
- package/lib/mol-io/reader/mol2/parser.js +0 -1
- package/lib/mol-io/reader/mol2/schema.js +0 -1
- package/lib/mol-io/reader/obj/parser.js +0 -1
- package/lib/mol-io/reader/pdb/parser.js +0 -1
- package/lib/mol-io/reader/pdb/schema.js +0 -1
- package/lib/mol-io/reader/ply/parser.js +0 -1
- package/lib/mol-io/reader/ply/schema.js +0 -1
- package/lib/mol-io/reader/psf/parser.js +0 -1
- package/lib/mol-io/reader/result.js +0 -1
- package/lib/mol-io/reader/sdf/parser-v3-util.js +0 -1
- package/lib/mol-io/reader/sdf/parser.js +0 -1
- package/lib/mol-io/reader/xtc/parser.js +0 -1
- package/lib/mol-io/reader/xyz/parser.js +0 -1
- package/lib/mol-io/utils/short-string-pool.js +0 -1
- package/lib/mol-io/writer/cif/encoder/binary.js +0 -1
- package/lib/mol-io/writer/cif/encoder/text.js +0 -1
- package/lib/mol-io/writer/cif/encoder/util.js +0 -1
- package/lib/mol-io/writer/cif/encoder.js +0 -1
- package/lib/mol-io/writer/cif.js +0 -1
- package/lib/mol-io/writer/encoder.js +0 -1
- package/lib/mol-io/writer/ligand-encoder.js +0 -1
- package/lib/mol-io/writer/mol/encoder.js +0 -1
- package/lib/mol-io/writer/mol.js +0 -1
- package/lib/mol-io/writer/mol2/encoder.js +0 -1
- package/lib/mol-io/writer/mol2.js +0 -1
- package/lib/mol-io/writer/sdf.js +0 -1
- package/lib/mol-io/writer/writer.js +0 -1
- package/lib/mol-math/approx.js +0 -1
- package/lib/mol-math/easing.js +0 -1
- package/lib/mol-math/geometry/boundary-helper.js +0 -1
- package/lib/mol-math/geometry/boundary.js +0 -1
- package/lib/mol-math/geometry/centroid-helper.js +0 -1
- package/lib/mol-math/geometry/common.js +0 -1
- package/lib/mol-math/geometry/distance-transform.js +0 -1
- package/lib/mol-math/geometry/gaussian-density/cpu.js +0 -1
- package/lib/mol-math/geometry/gaussian-density/gpu.js +0 -1
- package/lib/mol-math/geometry/gaussian-density.js +0 -1
- package/lib/mol-math/geometry/lookup3d/common.js +0 -1
- package/lib/mol-math/geometry/lookup3d/grid.js +0 -1
- package/lib/mol-math/geometry/molecular-surface.js +0 -1
- package/lib/mol-math/geometry/primitives/axes3d.js +0 -1
- package/lib/mol-math/geometry/primitives/box3d.js +0 -1
- package/lib/mol-math/geometry/primitives/sphere3d.js +0 -1
- package/lib/mol-math/geometry/spacegroup/cell.js +0 -1
- package/lib/mol-math/geometry/spacegroup/construction.js +0 -1
- package/lib/mol-math/geometry/spacegroup/tables.js +0 -1
- package/lib/mol-math/geometry/symmetry-operator.js +0 -1
- package/lib/mol-math/geometry.js +0 -1
- package/lib/mol-math/graph/int-adjacency-graph.js +0 -1
- package/lib/mol-math/graph/inter-unit-graph.js +0 -1
- package/lib/mol-math/graph.js +0 -1
- package/lib/mol-math/histogram.js +0 -1
- package/lib/mol-math/interpolate.js +0 -1
- package/lib/mol-math/linear-algebra/3d/common.js +0 -1
- package/lib/mol-math/linear-algebra/3d/mat3.js +0 -1
- package/lib/mol-math/linear-algebra/3d/mat4.js +0 -1
- package/lib/mol-math/linear-algebra/3d/minimize-rmsd.js +0 -1
- package/lib/mol-math/linear-algebra/3d/quat.js +0 -1
- package/lib/mol-math/linear-algebra/3d/vec2.js +0 -1
- package/lib/mol-math/linear-algebra/3d/vec3.js +0 -1
- package/lib/mol-math/linear-algebra/3d/vec4.js +0 -1
- package/lib/mol-math/linear-algebra/3d.js +0 -1
- package/lib/mol-math/linear-algebra/matrix/evd.js +0 -1
- package/lib/mol-math/linear-algebra/matrix/matrix.js +0 -1
- package/lib/mol-math/linear-algebra/matrix/principal-axes.js +0 -1
- package/lib/mol-math/linear-algebra/matrix/svd.js +0 -1
- package/lib/mol-math/linear-algebra/tensor.js +0 -1
- package/lib/mol-math/linear-algebra.js +0 -1
- package/lib/mol-math/misc.js +0 -1
- package/lib/mol-model/custom-property.js +0 -1
- package/lib/mol-model/location.js +0 -1
- package/lib/mol-model/loci.js +0 -1
- package/lib/mol-model/sequence/alignment/alignment.js +0 -1
- package/lib/mol-model/sequence/alignment/sequence.js +0 -1
- package/lib/mol-model/sequence/alignment/substitution-matrix.js +0 -1
- package/lib/mol-model/sequence/alignment.js +0 -1
- package/lib/mol-model/sequence/constants.js +0 -1
- package/lib/mol-model/sequence/sequence.js +0 -1
- package/lib/mol-model/sequence.js +0 -1
- package/lib/mol-model/shape/provider.js +0 -1
- package/lib/mol-model/shape/shape.js +0 -1
- package/lib/mol-model/shape.js +0 -1
- package/lib/mol-model/structure/coordinates/coordinates.js +0 -1
- package/lib/mol-model/structure/coordinates.js +0 -1
- package/lib/mol-model/structure/export/categories/atom_site.js +68 -2
- package/lib/mol-model/structure/export/categories/atom_site_operator_mapping.js +0 -1
- package/lib/mol-model/structure/export/categories/misc.js +0 -1
- package/lib/mol-model/structure/export/categories/secondary-structure.js +8 -9
- package/lib/mol-model/structure/export/categories/sequence.js +0 -1
- package/lib/mol-model/structure/export/categories/utils.js +0 -1
- package/lib/mol-model/structure/export/mmcif.js +0 -1
- package/lib/mol-model/structure/model/indexing.js +0 -1
- package/lib/mol-model/structure/model/model.d.ts +5 -1
- package/lib/mol-model/structure/model/model.js +38 -26
- package/lib/mol-model/structure/model/properties/atomic/bonds.js +0 -1
- package/lib/mol-model/structure/model/properties/atomic/conformation.js +0 -1
- package/lib/mol-model/structure/model/properties/atomic/hierarchy.js +0 -1
- package/lib/mol-model/structure/model/properties/atomic/measures.js +0 -1
- package/lib/mol-model/structure/model/properties/atomic/types.js +0 -1
- package/lib/mol-model/structure/model/properties/atomic.js +0 -1
- package/lib/mol-model/structure/model/properties/coarse/conformation.js +0 -1
- package/lib/mol-model/structure/model/properties/coarse/hierarchy.js +0 -1
- package/lib/mol-model/structure/model/properties/coarse.js +0 -1
- package/lib/mol-model/structure/model/properties/common.js +0 -1
- package/lib/mol-model/structure/model/properties/custom/indexed.js +0 -1
- package/lib/mol-model/structure/model/properties/global-transform.js +0 -1
- package/lib/mol-model/structure/model/properties/seconday-structure.js +0 -1
- package/lib/mol-model/structure/model/properties/sequence.js +0 -1
- package/lib/mol-model/structure/model/properties/symmetry.js +0 -1
- package/lib/mol-model/structure/model/properties/utils/atomic-derived.js +0 -1
- package/lib/mol-model/structure/model/properties/utils/atomic-index.js +0 -1
- package/lib/mol-model/structure/model/properties/utils/atomic-ranges.js +0 -1
- package/lib/mol-model/structure/model/properties/utils/coarse-keys.js +0 -1
- package/lib/mol-model/structure/model/properties/utils/coarse-ranges.js +0 -1
- package/lib/mol-model/structure/model/properties/utils/residue-set.js +0 -1
- package/lib/mol-model/structure/model/types/ions.js +0 -1
- package/lib/mol-model/structure/model/types/lipids.js +0 -1
- package/lib/mol-model/structure/model/types.js +0 -1
- package/lib/mol-model/structure/model/util.js +0 -1
- package/lib/mol-model/structure/model.js +0 -1
- package/lib/mol-model/structure/query/context.js +0 -1
- package/lib/mol-model/structure/query/predicates.js +0 -1
- package/lib/mol-model/structure/query/queries/combinators.js +0 -1
- package/lib/mol-model/structure/query/queries/filters.js +0 -1
- package/lib/mol-model/structure/query/queries/generators.js +0 -1
- package/lib/mol-model/structure/query/queries/internal.js +0 -1
- package/lib/mol-model/structure/query/queries/modifiers.js +0 -1
- package/lib/mol-model/structure/query/query.js +0 -1
- package/lib/mol-model/structure/query/selection.js +0 -1
- package/lib/mol-model/structure/query/utils/builders.js +0 -1
- package/lib/mol-model/structure/query/utils/structure-distance.js +0 -1
- package/lib/mol-model/structure/query/utils/structure-set.js +0 -1
- package/lib/mol-model/structure/query.js +0 -1
- package/lib/mol-model/structure/structure/carbohydrates/compute.js +0 -1
- package/lib/mol-model/structure/structure/carbohydrates/constants.js +0 -1
- package/lib/mol-model/structure/structure/carbohydrates/data.js +0 -1
- package/lib/mol-model/structure/structure/element/bundle.js +0 -1
- package/lib/mol-model/structure/structure/element/element.js +0 -1
- package/lib/mol-model/structure/structure/element/location.js +0 -1
- package/lib/mol-model/structure/structure/element/loci.js +0 -1
- package/lib/mol-model/structure/structure/element/stats.js +0 -1
- package/lib/mol-model/structure/structure/element/util.js +0 -1
- package/lib/mol-model/structure/structure/element.js +0 -1
- package/lib/mol-model/structure/structure/properties.js +0 -1
- package/lib/mol-model/structure/structure/structure.d.ts +1 -1
- package/lib/mol-model/structure/structure/structure.js +10 -4
- package/lib/mol-model/structure/structure/symmetry.js +0 -1
- package/lib/mol-model/structure/structure/unit/bonds/common.js +0 -1
- package/lib/mol-model/structure/structure/unit/bonds/data.d.ts +2 -1
- package/lib/mol-model/structure/structure/unit/bonds/data.js +1 -2
- package/lib/mol-model/structure/structure/unit/bonds/element-set-intra-bond-cache.js +0 -1
- package/lib/mol-model/structure/structure/unit/bonds/inter-compute.js +0 -1
- package/lib/mol-model/structure/structure/unit/bonds/intra-compute.js +1 -2
- package/lib/mol-model/structure/structure/unit/bonds.js +0 -1
- package/lib/mol-model/structure/structure/unit/resonance.d.ts +23 -0
- package/lib/mol-model/structure/structure/unit/resonance.js +60 -0
- package/lib/mol-model/structure/structure/unit/rings/compute.js +70 -44
- package/lib/mol-model/structure/structure/unit/rings.js +0 -1
- package/lib/mol-model/structure/structure/unit.d.ts +4 -1
- package/lib/mol-model/structure/structure/unit.js +37 -7
- package/lib/mol-model/structure/structure/util/boundary.js +0 -1
- package/lib/mol-model/structure/structure/util/lookup3d.js +0 -1
- package/lib/mol-model/structure/structure/util/polymer.js +0 -1
- package/lib/mol-model/structure/structure/util/principal-axes.js +0 -1
- package/lib/mol-model/structure/structure/util/subset-builder.js +0 -1
- package/lib/mol-model/structure/structure/util/superposition-sifts-mapping.d.ts +21 -0
- package/lib/mol-model/structure/structure/util/{superposition-db-mapping.js → superposition-sifts-mapping.js} +37 -18
- package/lib/mol-model/structure/structure/util/superposition.js +0 -1
- package/lib/mol-model/structure/structure/util/unique-subset-builder.js +0 -1
- package/lib/mol-model/structure/structure/util/unit-transforms.js +0 -1
- package/lib/mol-model/structure/structure.js +0 -1
- package/lib/mol-model/structure/topology/topology.js +0 -1
- package/lib/mol-model/structure/topology.js +0 -1
- package/lib/mol-model/structure/trajectory.js +0 -1
- package/lib/mol-model/structure/util.js +0 -1
- package/lib/mol-model/structure.js +0 -1
- package/lib/mol-model/volume/grid.js +0 -1
- package/lib/mol-model/volume/volume.js +0 -1
- package/lib/mol-model/volume.js +0 -1
- package/lib/mol-model-formats/format.js +0 -1
- package/lib/mol-model-formats/shape/ply.js +0 -1
- package/lib/mol-model-formats/structure/basic/atomic.js +0 -1
- package/lib/mol-model-formats/structure/basic/coarse.js +0 -1
- package/lib/mol-model-formats/structure/basic/entities.js +0 -1
- package/lib/mol-model-formats/structure/basic/parser.js +0 -1
- package/lib/mol-model-formats/structure/basic/properties.js +0 -1
- package/lib/mol-model-formats/structure/basic/schema.d.ts +5 -0
- package/lib/mol-model-formats/structure/basic/schema.js +0 -1
- package/lib/mol-model-formats/structure/basic/sequence.js +0 -1
- package/lib/mol-model-formats/structure/basic/sort.js +0 -1
- package/lib/mol-model-formats/structure/basic/util.js +0 -1
- package/lib/mol-model-formats/structure/cif-core.js +0 -1
- package/lib/mol-model-formats/structure/common/component.d.ts +1 -1
- package/lib/mol-model-formats/structure/common/component.js +3 -4
- package/lib/mol-model-formats/structure/common/entity.js +0 -1
- package/lib/mol-model-formats/structure/common/property.d.ts +5 -2
- package/lib/mol-model-formats/structure/common/property.js +20 -9
- package/lib/mol-model-formats/structure/common/util.js +0 -1
- package/lib/mol-model-formats/structure/cube.js +0 -1
- package/lib/mol-model-formats/structure/dcd.js +0 -1
- package/lib/mol-model-formats/structure/gro.js +0 -1
- package/lib/mol-model-formats/structure/mmcif.js +0 -1
- package/lib/mol-model-formats/structure/mol.js +0 -1
- package/lib/mol-model-formats/structure/mol2.js +1 -2
- package/lib/mol-model-formats/structure/pdb/anisotropic.js +0 -1
- package/lib/mol-model-formats/structure/pdb/assembly.js +0 -1
- package/lib/mol-model-formats/structure/pdb/atom-site.js +0 -1
- package/lib/mol-model-formats/structure/pdb/conect.js +0 -1
- package/lib/mol-model-formats/structure/pdb/entity.js +0 -1
- package/lib/mol-model-formats/structure/pdb/secondary-structure.js +0 -1
- package/lib/mol-model-formats/structure/pdb/to-cif.js +0 -1
- package/lib/mol-model-formats/structure/pdb.js +0 -1
- package/lib/mol-model-formats/structure/property/anisotropic.js +0 -1
- package/lib/mol-model-formats/structure/property/assembly.js +0 -1
- package/lib/mol-model-formats/structure/property/atoms/chem_comp.js +0 -1
- package/lib/mol-model-formats/structure/property/bonds/chem_comp.d.ts +1 -1
- package/lib/mol-model-formats/structure/property/bonds/chem_comp.js +7 -6
- package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts +1 -0
- package/lib/mol-model-formats/structure/property/bonds/index-pair.js +2 -2
- package/lib/mol-model-formats/structure/property/bonds/struct_conn.js +0 -1
- package/lib/mol-model-formats/structure/property/partial-charge.js +0 -1
- package/lib/mol-model-formats/structure/property/secondary-structure.js +0 -1
- package/lib/mol-model-formats/structure/property/symmetry.js +0 -1
- package/lib/mol-model-formats/structure/psf.js +0 -1
- package/lib/mol-model-formats/structure/sdf.js +0 -1
- package/lib/mol-model-formats/structure/util.js +0 -1
- package/lib/mol-model-formats/structure/xtc.js +0 -1
- package/lib/mol-model-formats/structure/xyz.js +0 -1
- package/lib/mol-model-formats/volume/ccp4.js +0 -1
- package/lib/mol-model-formats/volume/cube.js +0 -1
- package/lib/mol-model-formats/volume/density-server.js +0 -1
- package/lib/mol-model-formats/volume/dsn6.js +0 -1
- package/lib/mol-model-formats/volume/dx.js +0 -1
- package/lib/mol-model-formats/volume/property.js +0 -1
- package/lib/mol-model-props/common/custom-element-property.js +0 -1
- package/lib/mol-model-props/common/custom-model-property.js +0 -1
- package/lib/mol-model-props/common/custom-property.js +0 -1
- package/lib/mol-model-props/common/custom-structure-property.js +0 -1
- package/lib/mol-model-props/common/wrapper.js +0 -1
- package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/area.js +0 -1
- package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/common.js +0 -1
- package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js +0 -1
- package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley.js +0 -1
- package/lib/mol-model-props/computed/accessible-surface-area.js +0 -1
- package/lib/mol-model-props/computed/chemistry/functional-group.js +0 -1
- package/lib/mol-model-props/computed/chemistry/geometry.js +0 -1
- package/lib/mol-model-props/computed/chemistry/util.js +0 -1
- package/lib/mol-model-props/computed/chemistry/valence-model.js +0 -1
- package/lib/mol-model-props/computed/helix-orientation/helix-orientation.js +0 -1
- package/lib/mol-model-props/computed/helix-orientation.js +0 -1
- package/lib/mol-model-props/computed/interactions/charged.js +0 -1
- package/lib/mol-model-props/computed/interactions/common.js +0 -1
- package/lib/mol-model-props/computed/interactions/contacts-builder.js +0 -1
- package/lib/mol-model-props/computed/interactions/contacts.js +0 -1
- package/lib/mol-model-props/computed/interactions/features.js +0 -1
- package/lib/mol-model-props/computed/interactions/halogen-bonds.js +0 -1
- package/lib/mol-model-props/computed/interactions/hydrogen-bonds.js +0 -1
- package/lib/mol-model-props/computed/interactions/hydrophobic.js +0 -1
- package/lib/mol-model-props/computed/interactions/interactions.js +0 -1
- package/lib/mol-model-props/computed/interactions/metal.js +0 -1
- package/lib/mol-model-props/computed/interactions/refine.js +0 -1
- package/lib/mol-model-props/computed/interactions.js +0 -1
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.js +0 -1
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.js +0 -1
- package/lib/mol-model-props/computed/representations/interactions.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/backbone-hbonds.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/bends.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/bridges.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/common.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/dihedral-angles.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/helices.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/ladders.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/protein-info.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/sheets.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/trace-lookup.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp/turns.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/dssp.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure/zhang-skolnik.js +0 -1
- package/lib/mol-model-props/computed/secondary-structure.js +0 -1
- package/lib/mol-model-props/computed/themes/accessible-surface-area.js +0 -1
- package/lib/mol-model-props/computed/themes/interaction-type.js +0 -1
- package/lib/mol-model-props/computed/valence-model.js +0 -1
- package/lib/mol-model-props/integrative/cross-link-restraint/color.js +0 -1
- package/lib/mol-model-props/integrative/cross-link-restraint/format.js +0 -1
- package/lib/mol-model-props/integrative/cross-link-restraint/property.js +0 -1
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.js +0 -1
- package/lib/mol-model-props/integrative/pair-restraints.js +0 -1
- package/lib/mol-model-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +7 -5
- package/lib/mol-model-props/sequence/{best-database-mapping.js → sifts-mapping.js} +27 -25
- package/lib/{commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts → mol-model-props/sequence/themes/sifts-mapping.d.ts} +5 -5
- package/lib/mol-model-props/sequence/themes/{best-database-mapping.js → sifts-mapping.js} +18 -19
- package/lib/mol-plugin/animation-loop.js +0 -1
- package/lib/mol-plugin/behavior/behavior.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/camera.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/secondary-structure.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/integrative/cross-link-restraint.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.d.ts → sifts-mapping.d.ts} +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props/sequence/{best-database-mapping.js → sifts-mapping.js} +7 -8
- package/lib/mol-plugin/behavior/dynamic/custom-props/structure-info.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props.d.ts +1 -1
- package/lib/mol-plugin/behavior/dynamic/custom-props.js +1 -2
- package/lib/mol-plugin/behavior/dynamic/representation.js +4 -5
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +2 -1
- package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +16 -8
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/transformers.js +0 -1
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/util.js +10 -4
- package/lib/mol-plugin/behavior/static/camera.js +0 -1
- package/lib/mol-plugin/behavior/static/misc.js +0 -1
- package/lib/mol-plugin/behavior/static/representation.js +0 -1
- package/lib/mol-plugin/behavior/static/state.js +0 -1
- package/lib/mol-plugin/behavior.js +0 -1
- package/lib/mol-plugin/command.js +0 -1
- package/lib/mol-plugin/commands.d.ts +1 -0
- package/lib/mol-plugin/commands.js +0 -1
- package/lib/mol-plugin/config.js +0 -1
- package/lib/mol-plugin/context.js +0 -1
- package/lib/mol-plugin/features.js +0 -1
- package/lib/mol-plugin/layout.js +0 -1
- package/lib/mol-plugin/spec.js +0 -1
- package/lib/mol-plugin/state.js +0 -1
- package/lib/mol-plugin/util/substructure-parent-helper.js +0 -1
- package/lib/mol-plugin/util/task-manager.js +0 -1
- package/lib/mol-plugin/util/toast.js +0 -1
- package/lib/mol-plugin/util/viewport-screenshot.js +2 -3
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/file.js +0 -1
- package/lib/mol-plugin-state/actions/structure.js +0 -1
- package/lib/mol-plugin-state/actions/volume.js +0 -1
- package/lib/mol-plugin-state/actions.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/assembly-unwind.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/camera-rock.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/camera-spin.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/explode-units.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/model-index.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/spin-structure.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/state-interpolation.js +0 -1
- package/lib/mol-plugin-state/animation/built-in/state-snapshots.js +0 -1
- package/lib/mol-plugin-state/animation/helpers.js +0 -1
- package/lib/mol-plugin-state/animation/model.js +0 -1
- package/lib/mol-plugin-state/builder/data.js +0 -1
- package/lib/mol-plugin-state/builder/preset-provider.js +0 -1
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +2 -0
- package/lib/mol-plugin-state/builder/structure/hierarchy-preset.js +0 -1
- package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -0
- package/lib/mol-plugin-state/builder/structure/hierarchy.js +0 -1
- package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +128 -120
- package/lib/mol-plugin-state/builder/structure/representation-preset.js +7 -34
- package/lib/mol-plugin-state/builder/structure/representation.d.ts +2 -1
- package/lib/mol-plugin-state/builder/structure/representation.js +0 -1
- package/lib/mol-plugin-state/builder/structure.js +0 -1
- package/lib/mol-plugin-state/component.js +0 -1
- package/lib/mol-plugin-state/formats/provider.js +0 -1
- package/lib/mol-plugin-state/formats/registry.js +0 -1
- package/lib/mol-plugin-state/formats/shape.js +0 -1
- package/lib/mol-plugin-state/formats/structure.js +0 -1
- package/lib/mol-plugin-state/formats/trajectory.js +0 -1
- package/lib/mol-plugin-state/formats/volume.js +0 -1
- package/lib/mol-plugin-state/helpers/root-structure.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-clipping.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-component.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-overpaint.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-query.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-representation-params.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-selection-query.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-substance.js +0 -1
- package/lib/mol-plugin-state/helpers/structure-transparency.js +0 -1
- package/lib/mol-plugin-state/helpers/volume-representation-params.js +0 -1
- package/lib/mol-plugin-state/manager/animation.js +0 -1
- package/lib/mol-plugin-state/manager/camera.js +0 -1
- package/lib/mol-plugin-state/manager/interactivity.d.ts +5 -3
- package/lib/mol-plugin-state/manager/interactivity.js +0 -1
- package/lib/mol-plugin-state/manager/loci-label.js +0 -1
- package/lib/mol-plugin-state/manager/snapshots.js +0 -1
- package/lib/mol-plugin-state/manager/structure/component.d.ts +2 -1
- package/lib/mol-plugin-state/manager/structure/component.js +11 -9
- package/lib/mol-plugin-state/manager/structure/focus.js +0 -1
- package/lib/mol-plugin-state/manager/structure/hierarchy-state.js +0 -1
- package/lib/mol-plugin-state/manager/structure/hierarchy.js +0 -1
- package/lib/mol-plugin-state/manager/structure/measurement.js +0 -1
- package/lib/mol-plugin-state/manager/structure/selection.js +0 -1
- package/lib/mol-plugin-state/manager/volume/hierarchy-state.js +0 -1
- package/lib/mol-plugin-state/manager/volume/hierarchy.js +0 -1
- package/lib/mol-plugin-state/objects.js +0 -1
- package/lib/mol-plugin-state/transforms/data.js +0 -1
- package/lib/mol-plugin-state/transforms/helpers.js +0 -1
- package/lib/mol-plugin-state/transforms/misc.js +0 -1
- package/lib/mol-plugin-state/transforms/model.js +0 -1
- package/lib/mol-plugin-state/transforms/representation.js +0 -1
- package/lib/mol-plugin-state/transforms/shape.js +0 -1
- package/lib/mol-plugin-state/transforms/volume.js +0 -1
- package/lib/mol-plugin-state/transforms.js +0 -1
- package/lib/mol-plugin-ui/base.js +0 -1
- package/lib/mol-plugin-ui/context.js +0 -1
- package/lib/mol-plugin-ui/controls/action-menu.js +0 -1
- package/lib/mol-plugin-ui/controls/color.js +0 -1
- package/lib/mol-plugin-ui/controls/common.js +0 -1
- package/lib/mol-plugin-ui/controls/icons.d.ts +2 -1
- package/lib/mol-plugin-ui/controls/icons.js +5 -4
- package/lib/mol-plugin-ui/controls/legend.js +0 -1
- package/lib/mol-plugin-ui/controls/line-graph/line-graph-component.js +0 -1
- package/lib/mol-plugin-ui/controls/line-graph/point-component.js +0 -1
- package/lib/mol-plugin-ui/controls/parameters.js +0 -1
- package/lib/mol-plugin-ui/controls/screenshot.js +0 -1
- package/lib/mol-plugin-ui/controls/slider.js +0 -1
- package/lib/mol-plugin-ui/controls.d.ts +1 -1
- package/lib/mol-plugin-ui/controls.js +2 -2
- package/lib/mol-plugin-ui/custom/volume.js +0 -1
- package/lib/mol-plugin-ui/hooks/use-behavior.js +0 -1
- package/lib/mol-plugin-ui/index.js +0 -1
- package/lib/mol-plugin-ui/left-panel.js +0 -1
- package/lib/mol-plugin-ui/plugin.js +0 -1
- package/lib/mol-plugin-ui/sequence/chain.js +0 -1
- package/lib/mol-plugin-ui/sequence/element.js +0 -1
- package/lib/mol-plugin-ui/sequence/hetero.js +0 -1
- package/lib/mol-plugin-ui/sequence/polymer.js +0 -1
- package/lib/mol-plugin-ui/sequence/sequence.d.ts +2 -2
- package/lib/mol-plugin-ui/sequence/sequence.js +5 -7
- package/lib/mol-plugin-ui/sequence/wrapper.js +0 -1
- package/lib/mol-plugin-ui/sequence.js +0 -1
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +3 -3
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +3 -2
- package/lib/mol-plugin-ui/spec.js +0 -1
- package/lib/mol-plugin-ui/state/actions.js +0 -1
- package/lib/mol-plugin-ui/state/animation.js +0 -1
- package/lib/mol-plugin-ui/state/apply-action.js +0 -1
- package/lib/mol-plugin-ui/state/common.js +0 -1
- package/lib/mol-plugin-ui/state/snapshots.js +0 -1
- package/lib/mol-plugin-ui/state/tree.js +0 -1
- package/lib/mol-plugin-ui/state/update-transform.js +0 -1
- package/lib/mol-plugin-ui/structure/components.js +0 -1
- package/lib/mol-plugin-ui/structure/focus.js +0 -1
- package/lib/mol-plugin-ui/structure/generic.js +0 -1
- package/lib/mol-plugin-ui/structure/measurements.js +0 -1
- package/lib/mol-plugin-ui/structure/quick-styles.d.ts +25 -0
- package/lib/mol-plugin-ui/structure/quick-styles.js +127 -0
- package/lib/mol-plugin-ui/structure/selection.js +0 -1
- package/lib/mol-plugin-ui/structure/source.js +0 -1
- package/lib/mol-plugin-ui/structure/superposition.d.ts +4 -1
- package/lib/mol-plugin-ui/structure/superposition.js +66 -31
- package/lib/mol-plugin-ui/structure/volume.js +4 -5
- package/lib/mol-plugin-ui/task.js +0 -1
- package/lib/mol-plugin-ui/toast.js +0 -1
- package/lib/mol-plugin-ui/viewport/canvas.js +0 -1
- package/lib/mol-plugin-ui/viewport/help.js +0 -1
- package/lib/mol-plugin-ui/viewport/screenshot.js +0 -1
- package/lib/mol-plugin-ui/viewport/simple-settings.js +0 -1
- package/lib/mol-plugin-ui/viewport.js +0 -1
- package/lib/mol-repr/representation.js +0 -1
- package/lib/mol-repr/shape/loci/angle.js +0 -1
- package/lib/mol-repr/shape/loci/common.js +0 -1
- package/lib/mol-repr/shape/loci/dihedral.js +0 -1
- package/lib/mol-repr/shape/loci/distance.js +0 -1
- package/lib/mol-repr/shape/loci/label.js +0 -1
- package/lib/mol-repr/shape/loci/orientation.js +0 -1
- package/lib/mol-repr/shape/loci/plane.js +0 -1
- package/lib/mol-repr/shape/model/unitcell.js +0 -1
- package/lib/mol-repr/shape/representation.js +0 -1
- package/lib/mol-repr/structure/complex-representation.js +0 -1
- package/lib/mol-repr/structure/complex-visual.js +0 -1
- package/lib/mol-repr/structure/params.js +0 -1
- package/lib/mol-repr/structure/registry.d.ts +1 -1
- package/lib/mol-repr/structure/registry.js +0 -1
- package/lib/mol-repr/structure/representation/backbone.js +0 -1
- package/lib/mol-repr/structure/representation/ball-and-stick.js +0 -1
- package/lib/mol-repr/structure/representation/carbohydrate.js +0 -1
- package/lib/mol-repr/structure/representation/cartoon.d.ts +4 -4
- package/lib/mol-repr/structure/representation/cartoon.js +3 -4
- package/lib/mol-repr/structure/representation/ellipsoid.js +0 -1
- package/lib/mol-repr/structure/representation/gaussian-surface.js +0 -1
- package/lib/mol-repr/structure/representation/gaussian-volume.js +0 -1
- package/lib/mol-repr/structure/representation/label.js +0 -1
- package/lib/mol-repr/structure/representation/line.d.ts +1 -1
- package/lib/mol-repr/structure/representation/line.js +2 -3
- package/lib/mol-repr/structure/representation/molecular-surface.js +0 -1
- package/lib/mol-repr/structure/representation/orientation.js +0 -1
- package/lib/mol-repr/structure/representation/point.js +0 -1
- package/lib/mol-repr/structure/representation/putty.js +0 -1
- package/lib/mol-repr/structure/representation/spacefill.js +0 -1
- package/lib/mol-repr/structure/representation.js +0 -1
- package/lib/mol-repr/structure/units-representation.js +0 -1
- package/lib/mol-repr/structure/units-visual.js +0 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.js +0 -1
- package/lib/mol-repr/structure/visual/bond-inter-unit-line.js +0 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +1 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +9 -3
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +1 -1
- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +9 -3
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.js +0 -1
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.js +0 -1
- package/lib/mol-repr/structure/visual/element-cross.js +0 -1
- package/lib/mol-repr/structure/visual/element-point.js +0 -1
- package/lib/mol-repr/structure/visual/element-sphere.js +0 -1
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/gaussian-density-volume.js +0 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +0 -1
- package/lib/mol-repr/structure/visual/label-text.js +0 -1
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +0 -1
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.js +0 -1
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.js +0 -1
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.js +0 -1
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.js +0 -1
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.js +0 -1
- package/lib/mol-repr/structure/visual/util/bond.js +0 -1
- package/lib/mol-repr/structure/visual/util/common.js +0 -1
- package/lib/mol-repr/structure/visual/util/element.d.ts +1 -1
- package/lib/mol-repr/structure/visual/util/element.js +3 -32
- package/lib/mol-repr/structure/visual/util/gaussian.js +0 -1
- package/lib/mol-repr/structure/visual/util/link.js +0 -1
- package/lib/mol-repr/structure/visual/util/molecular-surface.js +0 -1
- package/lib/mol-repr/structure/visual/util/nucleotide.js +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/backbone.js +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/curve-segment.js +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/gap-iterator.js +0 -1
- package/lib/mol-repr/structure/visual/util/polymer/trace-iterator.js +0 -1
- package/lib/mol-repr/structure/visual/util/polymer.js +0 -1
- package/lib/mol-repr/util.js +0 -1
- package/lib/mol-repr/visual.js +0 -1
- package/lib/mol-repr/volume/direct-volume.js +0 -1
- package/lib/mol-repr/volume/isosurface.js +0 -1
- package/lib/mol-repr/volume/registry.js +0 -1
- package/lib/mol-repr/volume/representation.js +0 -1
- package/lib/mol-repr/volume/slice.js +0 -1
- package/lib/mol-repr/volume/util.js +0 -1
- package/lib/mol-script/compiler.js +0 -1
- package/lib/mol-script/language/builder.js +0 -1
- package/lib/mol-script/language/container.js +0 -1
- package/lib/mol-script/language/expression-formatter.js +0 -1
- package/lib/mol-script/language/expression.js +0 -1
- package/lib/mol-script/language/helpers.js +0 -1
- package/lib/mol-script/language/parser.js +0 -1
- package/lib/mol-script/language/symbol-table/core.js +0 -1
- package/lib/mol-script/language/symbol-table/internal.js +0 -1
- package/lib/mol-script/language/symbol-table/structure-query.js +0 -1
- package/lib/mol-script/language/symbol-table.js +0 -1
- package/lib/mol-script/language/symbol.js +0 -1
- package/lib/mol-script/language/type.js +0 -1
- package/lib/mol-script/runtime/environment.js +0 -1
- package/lib/mol-script/runtime/expression.js +0 -1
- package/lib/mol-script/runtime/query/base.js +0 -1
- package/lib/mol-script/runtime/query/compiler.js +0 -1
- package/lib/mol-script/runtime/query/table.js +0 -1
- package/lib/mol-script/runtime/runtime-macro.js +0 -1
- package/lib/mol-script/runtime/symbol.js +0 -1
- package/lib/mol-script/script/mol-script/examples.js +0 -1
- package/lib/mol-script/script/mol-script/parser.js +0 -1
- package/lib/mol-script/script/mol-script/script-macro.js +0 -1
- package/lib/mol-script/script/mol-script/symbols.js +0 -1
- package/lib/mol-script/script/parser.js +0 -1
- package/lib/mol-script/script.js +0 -1
- package/lib/mol-script/util/id-list.js +0 -1
- package/lib/mol-state/action/manager.js +0 -1
- package/lib/mol-state/action.js +0 -1
- package/lib/mol-state/index.js +0 -1
- package/lib/mol-state/object.js +0 -1
- package/lib/mol-state/state/builder.js +0 -1
- package/lib/mol-state/state/selection.js +0 -1
- package/lib/mol-state/state.js +0 -1
- package/lib/mol-state/transform.js +0 -1
- package/lib/mol-state/transformer.js +0 -1
- package/lib/mol-state/tree/immutable.js +0 -1
- package/lib/mol-state/tree/spine.js +0 -1
- package/lib/mol-state/tree/transient.js +0 -1
- package/lib/mol-state/tree.js +0 -1
- package/lib/mol-task/execution/observable.js +0 -1
- package/lib/mol-task/execution/progress.js +0 -1
- package/lib/mol-task/execution/runtime-context.js +0 -1
- package/lib/mol-task/execution/synchronous.js +0 -1
- package/lib/mol-task/index.js +0 -1
- package/lib/mol-task/task.js +0 -1
- package/lib/mol-task/util/chunked.js +0 -1
- package/lib/mol-task/util/multistep.js +0 -1
- package/lib/mol-task/util/scheduler.js +0 -1
- package/lib/mol-task/util/user-timing.js +0 -1
- package/lib/mol-theme/clipping.js +0 -1
- package/lib/mol-theme/color/atom-id.js +0 -1
- package/lib/mol-theme/color/carbohydrate-symbol.js +0 -1
- package/lib/mol-theme/color/chain-id.js +0 -1
- package/lib/mol-theme/color/element-index.js +0 -1
- package/lib/mol-theme/color/element-symbol.js +0 -1
- package/lib/mol-theme/color/entity-id.js +0 -1
- package/lib/mol-theme/color/entity-source.js +0 -1
- package/lib/mol-theme/color/hydrophobicity.js +0 -1
- package/lib/mol-theme/color/illustrative.js +0 -1
- package/lib/mol-theme/color/model-index.js +0 -1
- package/lib/mol-theme/color/molecule-type.js +0 -1
- package/lib/mol-theme/color/occupancy.js +0 -1
- package/lib/mol-theme/color/operator-hkl.js +0 -1
- package/lib/mol-theme/color/operator-name.js +0 -1
- package/lib/mol-theme/color/partial-charge.js +0 -1
- package/lib/mol-theme/color/polymer-id.js +0 -1
- package/lib/mol-theme/color/polymer-index.js +0 -1
- package/lib/mol-theme/color/residue-name.js +0 -1
- package/lib/mol-theme/color/secondary-structure.js +0 -1
- package/lib/mol-theme/color/sequence-id.js +0 -1
- package/lib/mol-theme/color/shape-group.js +0 -1
- package/lib/mol-theme/color/uncertainty.js +0 -1
- package/lib/mol-theme/color/uniform.js +0 -1
- package/lib/mol-theme/color/unit-index.js +0 -1
- package/lib/mol-theme/color/volume-value.js +0 -1
- package/lib/mol-theme/color.js +0 -1
- package/lib/mol-theme/label.js +0 -1
- package/lib/mol-theme/overpaint.js +0 -1
- package/lib/mol-theme/size/physical.js +0 -1
- package/lib/mol-theme/size/shape-group.js +0 -1
- package/lib/mol-theme/size/uncertainty.js +0 -1
- package/lib/mol-theme/size/uniform.js +0 -1
- package/lib/mol-theme/size.js +0 -1
- package/lib/mol-theme/substance.js +0 -1
- package/lib/mol-theme/theme.js +0 -1
- package/lib/mol-theme/transparency.js +0 -1
- package/lib/mol-util/array.js +0 -1
- package/lib/mol-util/assets.js +0 -1
- package/lib/mol-util/async-queue.js +0 -1
- package/lib/mol-util/binding.js +0 -1
- package/lib/mol-util/bit-flags.js +0 -1
- package/lib/mol-util/clip.js +0 -1
- package/lib/mol-util/color/color.js +0 -1
- package/lib/mol-util/color/distinct.js +0 -1
- package/lib/mol-util/color/index.js +0 -1
- package/lib/mol-util/color/lists.js +0 -1
- package/lib/mol-util/color/names.js +0 -1
- package/lib/mol-util/color/palette.js +0 -1
- package/lib/mol-util/color/params.js +0 -1
- package/lib/mol-util/color/scale.js +0 -1
- package/lib/mol-util/color/spaces/hcl.js +0 -1
- package/lib/mol-util/color/spaces/lab.js +0 -1
- package/lib/mol-util/color/swatches.js +0 -1
- package/lib/mol-util/console-logger.js +0 -1
- package/lib/mol-util/data-source.js +0 -1
- package/lib/mol-util/date.js +0 -1
- package/lib/mol-util/debug.js +0 -1
- package/lib/mol-util/download.js +0 -1
- package/lib/mol-util/file-info.js +0 -1
- package/lib/mol-util/graphql-client.js +0 -1
- package/lib/mol-util/id-factory.js +0 -1
- package/lib/mol-util/image.js +0 -1
- package/lib/mol-util/index.js +0 -1
- package/lib/mol-util/input/event-offset.js +0 -1
- package/lib/mol-util/input/input-observer.js +0 -1
- package/lib/mol-util/is-little-endian.js +0 -1
- package/lib/mol-util/legend.js +0 -1
- package/lib/mol-util/log-entry.js +0 -1
- package/lib/mol-util/lru-cache.js +0 -1
- package/lib/mol-util/make-dir.js +0 -1
- package/lib/mol-util/map.js +0 -1
- package/lib/mol-util/marker-action.js +0 -1
- package/lib/mol-util/mask.js +0 -1
- package/lib/mol-util/material.js +0 -1
- package/lib/mol-util/memoize.js +0 -1
- package/lib/mol-util/monadic-parser.js +0 -1
- package/lib/mol-util/now.js +0 -1
- package/lib/mol-util/number-packing.js +0 -1
- package/lib/mol-util/number.js +0 -1
- package/lib/mol-util/object.js +0 -1
- package/lib/mol-util/param-definition.js +0 -1
- package/lib/mol-util/param-mapping.js +0 -1
- package/lib/mol-util/performance-monitor.js +0 -1
- package/lib/mol-util/polyfill.js +0 -1
- package/lib/mol-util/read.js +0 -1
- package/lib/mol-util/reference-cache.js +0 -1
- package/lib/mol-util/retry-if.js +0 -1
- package/lib/mol-util/rx-event-helper.js +0 -1
- package/lib/mol-util/set.js +0 -1
- package/lib/mol-util/sleep.js +0 -1
- package/lib/mol-util/string-builder.js +0 -1
- package/lib/mol-util/string.js +0 -1
- package/lib/mol-util/type-helpers.js +0 -1
- package/lib/mol-util/url.js +0 -1
- package/lib/mol-util/uuid.js +0 -1
- package/lib/mol-util/value-cell.js +0 -1
- package/lib/mol-util/zip/bin.js +0 -1
- package/lib/mol-util/zip/checksum.js +0 -1
- package/lib/mol-util/zip/deflate.js +0 -1
- package/lib/mol-util/zip/huffman.js +0 -1
- package/lib/mol-util/zip/inflate.js +0 -1
- package/lib/mol-util/zip/util.js +0 -1
- package/lib/mol-util/zip/zip.js +0 -1
- package/lib/servers/common/file-handle.js +0 -1
- package/lib/servers/common/swagger-ui/index.js +0 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +0 -1
- package/lib/servers/common/util.js +0 -1
- package/lib/servers/model/config.js +0 -1
- package/lib/servers/model/preprocess/converter.js +0 -1
- package/lib/servers/model/preprocess/master.js +0 -1
- package/lib/servers/model/preprocess/parallel.js +0 -1
- package/lib/servers/model/preprocess/preprocess.js +0 -1
- package/lib/servers/model/preprocess/util.js +0 -1
- package/lib/servers/model/preprocess.js +0 -1
- package/lib/servers/model/properties/pdbe.js +0 -1
- package/lib/servers/model/properties/providers/pdbe.js +0 -1
- package/lib/servers/model/properties/providers/wwpdb.js +0 -1
- package/lib/servers/model/properties/wwpdb.js +0 -1
- package/lib/servers/model/property-provider.js +0 -1
- package/lib/servers/model/query/atoms.js +0 -1
- package/lib/servers/model/query/schemas.js +0 -1
- package/lib/servers/model/query.js +0 -1
- package/lib/servers/model/server/api-local.js +0 -1
- package/lib/servers/model/server/api-schema.js +0 -1
- package/lib/servers/model/server/api-web-multiple.js +0 -1
- package/lib/servers/model/server/api-web.js +0 -1
- package/lib/servers/model/server/api.js +0 -1
- package/lib/servers/model/server/cache.js +0 -1
- package/lib/servers/model/server/jobs.js +0 -1
- package/lib/servers/model/server/query.js +0 -1
- package/lib/servers/model/server/structure-wrapper.js +0 -1
- package/lib/servers/model/server.js +0 -1
- package/lib/servers/model/test.js +0 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +0 -1
- package/lib/servers/model/utils/fetch-retry.js +0 -1
- package/lib/servers/model/utils/tar.js +0 -1
- package/lib/servers/model/utils/writer.js +0 -1
- package/lib/servers/model/version.js +0 -1
- package/lib/servers/plugin-state/api-schema.js +0 -1
- package/lib/servers/plugin-state/config.js +0 -1
- package/lib/servers/plugin-state/index.js +0 -1
- package/lib/servers/plugin-state/version.js +0 -1
- package/lib/servers/volume/common/binary-schema.js +0 -1
- package/lib/servers/volume/common/data-format.js +0 -1
- package/lib/servers/volume/common/file.js +0 -1
- package/lib/servers/volume/config.js +0 -1
- package/lib/servers/volume/pack/data-model.js +0 -1
- package/lib/servers/volume/pack/downsampling.js +0 -1
- package/lib/servers/volume/pack/format/ccp4.js +0 -1
- package/lib/servers/volume/pack/format/dsn6.js +0 -1
- package/lib/servers/volume/pack/format.js +0 -1
- package/lib/servers/volume/pack/main.js +0 -1
- package/lib/servers/volume/pack/sampling.js +0 -1
- package/lib/servers/volume/pack/version.js +0 -1
- package/lib/servers/volume/pack/writer.js +0 -1
- package/lib/servers/volume/pack.js +0 -1
- package/lib/servers/volume/query.js +0 -1
- package/lib/servers/volume/server/algebra/box.js +0 -1
- package/lib/servers/volume/server/algebra/coordinate.js +0 -1
- package/lib/servers/volume/server/api.js +0 -1
- package/lib/servers/volume/server/local-api.js +0 -1
- package/lib/servers/volume/server/query/compose.js +0 -1
- package/lib/servers/volume/server/query/data-model.js +0 -1
- package/lib/servers/volume/server/query/encode.js +0 -1
- package/lib/servers/volume/server/query/execute.js +0 -1
- package/lib/servers/volume/server/query/identify.js +0 -1
- package/lib/servers/volume/server/state.js +0 -1
- package/lib/servers/volume/server/version.js +0 -1
- package/lib/servers/volume/server/web-api.js +0 -1
- package/lib/servers/volume/server/web-schema.js +0 -1
- package/lib/servers/volume/server.js +0 -1
- package/package.json +29 -29
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.d.ts +0 -13
- package/lib/mol-model/structure/structure/util/superposition-db-mapping.d.ts +0 -13
|
@@ -429,4 +429,3 @@ function applyTextureMeshSubstanceSmoothing(values, resolution, stride, webgl, c
|
|
|
429
429
|
mol_util_1.ValueCell.update(values.uSubstanceGridTransform, smoothingData.gridTransform);
|
|
430
430
|
}
|
|
431
431
|
exports.applyTextureMeshSubstanceSmoothing = applyTextureMeshSubstanceSmoothing;
|
|
432
|
-
//# sourceMappingURL=color-smoothing.js.map
|
|
@@ -155,4 +155,3 @@ function createHistogramPyramid(ctx, inputTexture, scale, gridTexDim) {
|
|
|
155
155
|
return { pyramidTex: pyramidTex, count: count, height: height, levels: levels, scale: scale };
|
|
156
156
|
}
|
|
157
157
|
exports.createHistogramPyramid = createHistogramPyramid;
|
|
158
|
-
//# sourceMappingURL=reduction.js.map
|
|
@@ -200,4 +200,3 @@ exports.BaseSchema = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__a
|
|
|
200
200
|
boundingSphere: ValueSpec('sphere'),
|
|
201
201
|
/** bounding sphere NOT taking aTransform into account */
|
|
202
202
|
invariantBoundingSphere: ValueSpec('sphere') });
|
|
203
|
-
//# sourceMappingURL=schema.js.map
|
|
@@ -178,4 +178,3 @@ function calculateBoundingSphere(position, positionCount, transform, transformCo
|
|
|
178
178
|
return { boundingSphere: boundingSphere, invariantBoundingSphere: invariantBoundingSphere };
|
|
179
179
|
}
|
|
180
180
|
exports.calculateBoundingSphere = calculateBoundingSphere;
|
|
181
|
-
//# sourceMappingURL=util.js.map
|
|
@@ -12,7 +12,6 @@ var color_1 = require("../mol-util/color");
|
|
|
12
12
|
var mol_util_1 = require("../mol-util");
|
|
13
13
|
var param_definition_1 = require("../mol-util/param-definition");
|
|
14
14
|
var misc_1 = require("../mol-math/misc");
|
|
15
|
-
var texture_1 = require("./webgl/texture");
|
|
16
15
|
var array_1 = require("../mol-util/array");
|
|
17
16
|
var interpolate_1 = require("../mol-math/interpolate");
|
|
18
17
|
exports.RendererParams = {
|
|
@@ -68,9 +67,9 @@ var Renderer;
|
|
|
68
67
|
var drawingBufferSize = linear_algebra_1.Vec2.create(gl.drawingBufferWidth, gl.drawingBufferHeight);
|
|
69
68
|
var bgColor = color_1.Color.toVec3Normalized((0, linear_algebra_1.Vec3)(), p.backgroundColor);
|
|
70
69
|
var transparentBackground = false;
|
|
71
|
-
var
|
|
70
|
+
var emptyDepthTexture = ctx.resources.texture('image-depth', 'depth', 'ushort', 'nearest');
|
|
72
71
|
var sharedTexturesList = [
|
|
73
|
-
['tDepth',
|
|
72
|
+
['tDepth', emptyDepthTexture]
|
|
74
73
|
];
|
|
75
74
|
var view = (0, linear_algebra_1.Mat4)();
|
|
76
75
|
var invView = (0, linear_algebra_1.Mat4)();
|
|
@@ -208,7 +207,7 @@ var Renderer;
|
|
|
208
207
|
mol_util_1.ValueCell.updateIfChanged(globalUniforms.uTransparentBackground, transparentBackground);
|
|
209
208
|
};
|
|
210
209
|
var updateInternal = function (group, camera, depthTexture, renderWboit, markingDepthTest) {
|
|
211
|
-
(0, array_1.arrayMapUpsert)(sharedTexturesList, 'tDepth', depthTexture ||
|
|
210
|
+
(0, array_1.arrayMapUpsert)(sharedTexturesList, 'tDepth', depthTexture || emptyDepthTexture);
|
|
212
211
|
mol_util_1.ValueCell.update(globalUniforms.uModel, group.view);
|
|
213
212
|
mol_util_1.ValueCell.update(globalUniforms.uModelView, linear_algebra_1.Mat4.mul(modelView, group.view, camera.view));
|
|
214
213
|
mol_util_1.ValueCell.update(globalUniforms.uInvModelView, linear_algebra_1.Mat4.invert(invModelView, modelView));
|
|
@@ -522,4 +521,3 @@ var Renderer;
|
|
|
522
521
|
Renderer.create = create;
|
|
523
522
|
})(Renderer || (Renderer = {}));
|
|
524
523
|
exports.Renderer = Renderer;
|
|
525
|
-
//# sourceMappingURL=renderer.js.map
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
@@ -26,6 +26,7 @@ interface Scene extends Object3D {
|
|
|
26
26
|
has: (o: GraphicsRenderObject) => boolean;
|
|
27
27
|
clear: () => void;
|
|
28
28
|
forEach: (callbackFn: (value: GraphicsRenderable, key: GraphicsRenderObject) => void) => void;
|
|
29
|
+
getMarkerAverage: () => number;
|
|
29
30
|
}
|
|
30
31
|
declare namespace Scene {
|
|
31
32
|
interface Group extends Object3D {
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
/**
|
|
3
|
-
* Copyright (c) 2018-
|
|
3
|
+
* Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
4
4
|
*
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
6
6
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
@@ -217,10 +217,21 @@ var Scene;
|
|
|
217
217
|
visibleHash = computeVisibleHash();
|
|
218
218
|
}
|
|
219
219
|
return boundingSphereVisible;
|
|
220
|
-
}
|
|
220
|
+
},
|
|
221
|
+
getMarkerAverage: function () {
|
|
222
|
+
if (primitives.length === 0 && volumes.length === 0)
|
|
223
|
+
return 0;
|
|
224
|
+
var markerAverage = 0;
|
|
225
|
+
for (var i = 0, il = primitives.length; i < il; ++i) {
|
|
226
|
+
markerAverage += primitives[i].values.markerAverage.ref.value;
|
|
227
|
+
}
|
|
228
|
+
for (var i = 0, il = volumes.length; i < il; ++i) {
|
|
229
|
+
markerAverage += volumes[i].values.markerAverage.ref.value;
|
|
230
|
+
}
|
|
231
|
+
return markerAverage / (primitives.length + volumes.length);
|
|
232
|
+
},
|
|
221
233
|
};
|
|
222
234
|
}
|
|
223
235
|
Scene.create = create;
|
|
224
236
|
})(Scene || (Scene = {}));
|
|
225
237
|
exports.Scene = Scene;
|
|
226
|
-
//# sourceMappingURL=scene.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.apply_fog = void 0;
|
|
4
4
|
exports.apply_fog = "\nfloat viewZ = depthToViewZ(uIsOrtho, fragmentDepth, uNear, uFar);\nfloat fogFactor = smoothstep(uFogNear, uFogFar, abs(viewZ));\nfloat fogAlpha = (1.0 - fogFactor) * gl_FragColor.a;\nfloat preFogAlpha = gl_FragColor.a;\nif (!uTransparentBackground) {\n if (gl_FragColor.a < 1.0) {\n // transparent objects are blended with background color\n gl_FragColor.a = fogAlpha;\n } else {\n // mix opaque objects with background color\n gl_FragColor.rgb = mix(gl_FragColor.rgb, uFogColor, fogFactor);\n }\n} else {\n // pre-multiplied alpha expected for transparent background\n gl_FragColor.rgb *= fogAlpha;\n gl_FragColor.a = fogAlpha;\n}\n";
|
|
5
|
-
//# sourceMappingURL=apply-fog.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.apply_interior_color = void 0;
|
|
4
4
|
exports.apply_interior_color = "\nif (interior) {\n if (uInteriorColorFlag) {\n gl_FragColor.rgb = uInteriorColor;\n } else {\n gl_FragColor.rgb *= 1.0 - uInteriorDarkening;\n }\n}\n";
|
|
5
|
-
//# sourceMappingURL=apply-interior-color.glsl.js.map
|
|
@@ -1,9 +1,9 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2017-
|
|
2
|
+
* Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
5
|
*
|
|
6
6
|
* adapted from three.js (https://github.com/mrdoob/three.js/)
|
|
7
7
|
* which under the MIT License, Copyright © 2010-2021 three.js authors
|
|
8
8
|
*/
|
|
9
|
-
export declare const apply_light_color = "\n#ifdef bumpEnabled\n
|
|
9
|
+
export declare const apply_light_color = "\n#ifdef dIgnoreLight\n gl_FragColor = material;\n#else\n #ifdef bumpEnabled\n if (uBumpFrequency > 0.0 && uBumpAmplitude > 0.0) {\n vec3 bumpNormal = perturbNormal(-vViewPosition, normal, fbm(vModelPosition * uBumpFrequency), (uBumpAmplitude * bumpiness) / uBumpFrequency);\n #ifdef enabledFragDepth\n if (!isNaN(bumpNormal.x) && !isNaN(bumpNormal.y) && !isNaN(bumpNormal.z)) {\n normal = bumpNormal;\n }\n #else\n normal = bumpNormal;\n #endif\n }\n #endif\n\n vec4 color = material;\n\n ReflectedLight reflectedLight = ReflectedLight(vec3(0.0), vec3(0.0), vec3(0.0), vec3(0.0));\n\n PhysicalMaterial physicalMaterial;\n physicalMaterial.diffuseColor = color.rgb * (1.0 - metalness);\n #ifdef enabledFragDepth\n physicalMaterial.roughness = min(max(roughness, 0.0525), 1.0);\n #else\n vec3 dxy = max(abs(dFdx(normal)), abs(dFdy(normal)));\n float geometryRoughness = max(max(dxy.x, dxy.y), dxy.z);\n physicalMaterial.roughness = min(max(roughness, 0.0525) + geometryRoughness, 1.0);\n #endif\n physicalMaterial.specularColor = mix(vec3(0.04), color.rgb, metalness);\n physicalMaterial.specularF90 = 1.0;\n\n GeometricContext geometry;\n geometry.position = -vViewPosition;\n geometry.normal = normal;\n geometry.viewDir = normalize(vViewPosition);\n\n IncidentLight directLight;\n #pragma unroll_loop_start\n for (int i = 0; i < dLightCount; ++i) {\n directLight.direction = uLightDirection[i];\n directLight.color = uLightColor[i] * PI; // * PI for punctual light\n RE_Direct_Physical(directLight, geometry, physicalMaterial, reflectedLight);\n }\n #pragma unroll_loop_end\n\n vec3 irradiance = uAmbientColor * PI; // * PI for punctual light\n RE_IndirectDiffuse_Physical(irradiance, geometry, physicalMaterial, reflectedLight);\n\n // indirect specular only metals\n vec3 radiance = uAmbientColor * metalness;\n vec3 iblIrradiance = uAmbientColor * metalness;\n vec3 clearcoatRadiance = vec3(0.0);\n RE_IndirectSpecular_Physical(radiance, iblIrradiance, clearcoatRadiance, geometry, physicalMaterial, reflectedLight);\n\n vec3 outgoingLight = reflectedLight.directDiffuse + reflectedLight.indirectDiffuse + reflectedLight.directSpecular + reflectedLight.indirectSpecular;\n\n gl_FragColor = vec4(outgoingLight, color.a);\n#endif\n\n#ifdef dXrayShaded\n gl_FragColor.a *= 1.0 - pow(abs(dot(normal, vec3(0.0, 0.0, 1.0))), uXrayEdgeFalloff);\n#endif\n";
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
/**
|
|
3
|
-
* Copyright (c) 2017-
|
|
3
|
+
* Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
4
4
|
*
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
6
6
|
*
|
|
@@ -9,5 +9,4 @@
|
|
|
9
9
|
*/
|
|
10
10
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
11
11
|
exports.apply_light_color = void 0;
|
|
12
|
-
exports.apply_light_color = "\n#ifdef bumpEnabled\n
|
|
13
|
-
//# sourceMappingURL=apply-light-color.glsl.js.map
|
|
12
|
+
exports.apply_light_color = "\n#ifdef dIgnoreLight\n gl_FragColor = material;\n#else\n #ifdef bumpEnabled\n if (uBumpFrequency > 0.0 && uBumpAmplitude > 0.0) {\n vec3 bumpNormal = perturbNormal(-vViewPosition, normal, fbm(vModelPosition * uBumpFrequency), (uBumpAmplitude * bumpiness) / uBumpFrequency);\n #ifdef enabledFragDepth\n if (!isNaN(bumpNormal.x) && !isNaN(bumpNormal.y) && !isNaN(bumpNormal.z)) {\n normal = bumpNormal;\n }\n #else\n normal = bumpNormal;\n #endif\n }\n #endif\n\n vec4 color = material;\n\n ReflectedLight reflectedLight = ReflectedLight(vec3(0.0), vec3(0.0), vec3(0.0), vec3(0.0));\n\n PhysicalMaterial physicalMaterial;\n physicalMaterial.diffuseColor = color.rgb * (1.0 - metalness);\n #ifdef enabledFragDepth\n physicalMaterial.roughness = min(max(roughness, 0.0525), 1.0);\n #else\n vec3 dxy = max(abs(dFdx(normal)), abs(dFdy(normal)));\n float geometryRoughness = max(max(dxy.x, dxy.y), dxy.z);\n physicalMaterial.roughness = min(max(roughness, 0.0525) + geometryRoughness, 1.0);\n #endif\n physicalMaterial.specularColor = mix(vec3(0.04), color.rgb, metalness);\n physicalMaterial.specularF90 = 1.0;\n\n GeometricContext geometry;\n geometry.position = -vViewPosition;\n geometry.normal = normal;\n geometry.viewDir = normalize(vViewPosition);\n\n IncidentLight directLight;\n #pragma unroll_loop_start\n for (int i = 0; i < dLightCount; ++i) {\n directLight.direction = uLightDirection[i];\n directLight.color = uLightColor[i] * PI; // * PI for punctual light\n RE_Direct_Physical(directLight, geometry, physicalMaterial, reflectedLight);\n }\n #pragma unroll_loop_end\n\n vec3 irradiance = uAmbientColor * PI; // * PI for punctual light\n RE_IndirectDiffuse_Physical(irradiance, geometry, physicalMaterial, reflectedLight);\n\n // indirect specular only metals\n vec3 radiance = uAmbientColor * metalness;\n vec3 iblIrradiance = uAmbientColor * metalness;\n vec3 clearcoatRadiance = vec3(0.0);\n RE_IndirectSpecular_Physical(radiance, iblIrradiance, clearcoatRadiance, geometry, physicalMaterial, reflectedLight);\n\n vec3 outgoingLight = reflectedLight.directDiffuse + reflectedLight.indirectDiffuse + reflectedLight.directSpecular + reflectedLight.indirectSpecular;\n\n gl_FragColor = vec4(outgoingLight, color.a);\n#endif\n\n#ifdef dXrayShaded\n gl_FragColor.a *= 1.0 - pow(abs(dot(normal, vec3(0.0, 0.0, 1.0))), uXrayEdgeFalloff);\n#endif\n";
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.apply_marker_color = void 0;
|
|
4
4
|
exports.apply_marker_color = "\nif (marker > 0.0) {\n if ((uMarkerPriority == 1 && marker != 2.0) || (uMarkerPriority != 1 && marker == 1.0)) {\n gl_FragColor.rgb = mix(gl_FragColor.rgb, uHighlightColor, uHighlightStrength);\n gl_FragColor.a = max(gl_FragColor.a, uHighlightStrength * 0.002); // for direct-volume rendering\n } else {\n gl_FragColor.rgb = mix(gl_FragColor.rgb, uSelectColor, uSelectStrength);\n gl_FragColor.a = max(gl_FragColor.a, uSelectStrength * 0.002); // for direct-volume rendering\n }\n}\n";
|
|
5
|
-
//# sourceMappingURL=apply-marker-color.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_clipping_varying = void 0;
|
|
4
4
|
exports.assign_clipping_varying = "\n#if dClipObjectCount != 0 && defined(dClipping)\n vClipping = readFromTexture(tClipping, aInstance * float(uGroupCount) + group, uClippingTexDim).a;\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=assign-clipping-varying.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_color_varying = void 0;
|
|
4
4
|
exports.assign_color_varying = "\n#if defined(dRenderVariant_color)\n #if defined(dColorType_attribute)\n vColor.rgb = aColor;\n #elif defined(dColorType_instance)\n vColor.rgb = readFromTexture(tColor, aInstance, uColorTexDim).rgb;\n #elif defined(dColorType_group)\n vColor.rgb = readFromTexture(tColor, group, uColorTexDim).rgb;\n #elif defined(dColorType_groupInstance)\n vColor.rgb = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim).rgb;\n #elif defined(dColorType_vertex)\n vColor.rgb = readFromTexture(tColor, VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_vertexInstance)\n vColor.rgb = readFromTexture(tColor, int(aInstance) * uVertexCount + VertexID, uColorTexDim).rgb;\n #elif defined(dColorType_volume)\n vec3 cgridPos = (uColorGridTransform.w * (position - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #elif defined(dColorType_volumeInstance)\n vec3 cgridPos = (uColorGridTransform.w * (vModelPosition - uColorGridTransform.xyz)) / uColorGridDim;\n vColor.rgb = texture3dFrom2dLinear(tColorGrid, cgridPos, uColorGridDim, uColorTexDim).rgb;\n #endif\n\n #ifdef dUsePalette\n vPaletteV = ((vColor.r * 256.0 * 256.0 * 255.0 + vColor.g * 256.0 * 255.0 + vColor.b * 255.0) - 1.0) / 16777215.0;\n #endif\n\n #ifdef dOverpaint\n #if defined(dOverpaintType_groupInstance)\n vOverpaint = readFromTexture(tOverpaint, aInstance * float(uGroupCount) + group, uOverpaintTexDim);\n #elif defined(dOverpaintType_vertexInstance)\n vOverpaint = readFromTexture(tOverpaint, int(aInstance) * uVertexCount + VertexID, uOverpaintTexDim);\n #elif defined(dOverpaintType_volumeInstance)\n vec3 ogridPos = (uOverpaintGridTransform.w * (vModelPosition - uOverpaintGridTransform.xyz)) / uOverpaintGridDim;\n vOverpaint = texture3dFrom2dLinear(tOverpaintGrid, ogridPos, uOverpaintGridDim, uOverpaintTexDim);\n #endif\n\n // pre-mix to avoid darkening due to empty overpaint\n #ifdef dColorType_uniform\n vOverpaint.rgb = mix(uColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #else\n vOverpaint.rgb = mix(vColor.rgb, vOverpaint.rgb, vOverpaint.a);\n #endif\n #endif\n\n #ifdef dSubstance\n #if defined(dSubstanceType_groupInstance)\n vSubstance = readFromTexture(tSubstance, aInstance * float(uGroupCount) + group, uSubstanceTexDim);\n #elif defined(dSubstanceType_vertexInstance)\n vSubstance = readFromTexture(tSubstance, int(aInstance) * uVertexCount + VertexID, uSubstanceTexDim);\n #elif defined(dSubstanceType_volumeInstance)\n vec3 sgridPos = (uSubstanceGridTransform.w * (vModelPosition - uSubstanceGridTransform.xyz)) / uSubstanceGridDim;\n vSubstance = texture3dFrom2dLinear(tSubstanceGrid, sgridPos, uSubstanceGridDim, uSubstanceTexDim);\n #endif\n\n // pre-mix to avoid artifacts due to empty substance\n vSubstance.rgb = mix(vec3(uMetalness, uRoughness, uBumpiness), vSubstance.rgb, vSubstance.a);\n #endif\n#elif defined(dRenderVariant_pick)\n if (uPickType == 1) {\n vColor = vec4(packIntToRGB(float(uObjectId)), 1.0);\n } else if (uPickType == 2) {\n vColor = vec4(packIntToRGB(aInstance), 1.0);\n } else {\n vColor = vec4(packIntToRGB(group), 1.0);\n }\n#endif\n\n#ifdef dTransparency\n vGroup = group;\n\n #if defined(dTransparencyType_groupInstance)\n vTransparency = readFromTexture(tTransparency, aInstance * float(uGroupCount) + group, uTransparencyTexDim).a;\n #elif defined(dTransparencyType_vertexInstance)\n vTransparency = readFromTexture(tTransparency, int(aInstance) * uVertexCount + VertexID, uTransparencyTexDim).a;\n #elif defined(dTransparencyType_volumeInstance)\n vec3 tgridPos = (uTransparencyGridTransform.w * (vModelPosition - uTransparencyGridTransform.xyz)) / uTransparencyGridDim;\n vTransparency = texture3dFrom2dLinear(tTransparencyGrid, tgridPos, uTransparencyGridDim, uTransparencyTexDim).a;\n #endif\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=assign-color-varying.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_group = void 0;
|
|
4
4
|
exports.assign_group = "\n#ifdef dGeometryType_textureMesh\n float group = unpackRGBToInt(readFromTexture(tGroup, VertexID, uGeoTexDim).rgb);\n#else\n float group = aGroup;\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=assign-group.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_marker_varying = void 0;
|
|
4
4
|
exports.assign_marker_varying = "\n#if defined(dRenderVariant_color) || defined(dRenderVariant_marking)\n vMarker = readFromTexture(tMarker, aInstance * float(uGroupCount) + group, uMarkerTexDim).a;\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=assign-marker-varying.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_material_color = void 0;
|
|
4
4
|
exports.assign_material_color = "\n#if defined(dRenderVariant_color) || defined(dRenderVariant_marking)\n float marker = uMarker;\n if (uMarker == -1.0) {\n marker = floor(vMarker * 255.0 + 0.5); // rounding required to work on some cards on win\n }\n#endif\n\n#if defined(dRenderVariant_color)\n #if defined(dUsePalette)\n vec4 material = vec4(texture2D(tPalette, vec2(vPaletteV, 0.5)).rgb, uAlpha);\n #elif defined(dColorType_uniform)\n vec4 material = vec4(uColor, uAlpha);\n #elif defined(dColorType_varying)\n vec4 material = vec4(vColor.rgb, uAlpha);\n #endif\n\n // mix material with overpaint\n #if defined(dOverpaint)\n material.rgb = mix(material.rgb, vOverpaint.rgb, vOverpaint.a);\n #endif\n\n float metalness = uMetalness;\n float roughness = uRoughness;\n float bumpiness = uBumpiness;\n #ifdef dSubstance\n metalness = mix(metalness, vSubstance.r, vSubstance.a);\n roughness = mix(roughness, vSubstance.g, vSubstance.a);\n bumpiness = mix(bumpiness, vSubstance.b, vSubstance.a);\n #endif\n#elif defined(dRenderVariant_pick)\n vec4 material = vColor;\n#elif defined(dRenderVariant_depth)\n #ifdef enabledFragDepth\n vec4 material = packDepthToRGBA(gl_FragDepthEXT);\n #else\n vec4 material = packDepthToRGBA(gl_FragCoord.z);\n #endif\n#elif defined(dRenderVariant_marking)\n vec4 material;\n if(uMarkingType == 1) {\n if (marker > 0.0)\n discard;\n #ifdef enabledFragDepth\n material = packDepthToRGBA(gl_FragDepthEXT);\n #else\n material = packDepthToRGBA(gl_FragCoord.z);\n #endif\n } else {\n if (marker == 0.0)\n discard;\n float depthTest = 1.0;\n if (uMarkingDepthTest) {\n depthTest = (fragmentDepth >= getDepth(gl_FragCoord.xy / uDrawingBufferSize)) ? 1.0 : 0.0;\n }\n bool isHighlight = intMod(marker, 2.0) > 0.1;\n float viewZ = depthToViewZ(uIsOrtho, fragmentDepth, uNear, uFar);\n float fogFactor = smoothstep(uFogNear, uFogFar, abs(viewZ));\n if (fogFactor == 1.0)\n discard;\n material = vec4(0.0, depthTest, isHighlight ? 1.0 : 0.0, 1.0 - fogFactor);\n }\n#endif\n\n// apply screendoor transparency\n#if defined(dTransparency)\n float ta = 1.0 - vTransparency;\n #if defined(dRenderVariant_colorWboit)\n if (vTransparency < 0.2) ta = 1.0; // hard cutoff looks better with wboit\n #endif\n\n #if defined(dRenderVariant_pick)\n if (ta < uPickingAlphaThreshold)\n discard; // ignore so the element below can be picked\n #else\n #if defined(dRenderVariant_colorBlended)\n float at = 0.0;\n\n // shift by view-offset during multi-sample rendering to allow for blending\n vec2 coord = gl_FragCoord.xy + uViewOffset * 0.25;\n\n const mat4 thresholdMatrix = mat4(\n 1.0 / 17.0, 9.0 / 17.0, 3.0 / 17.0, 11.0 / 17.0,\n 13.0 / 17.0, 5.0 / 17.0, 15.0 / 17.0, 7.0 / 17.0,\n 4.0 / 17.0, 12.0 / 17.0, 2.0 / 17.0, 10.0 / 17.0,\n 16.0 / 17.0, 8.0 / 17.0, 14.0 / 17.0, 6.0 / 17.0\n );\n int ci = int(intMod(coord.x, 4.0));\n int ri = int(intMod(coord.y, 4.0));\n #if __VERSION__ == 100\n vec4 i = vec4(float(ci * 4 + ri));\n vec4 v = thresholdMatrix[0] * vec4(equal(i, vec4(0.0, 1.0, 2.0, 3.0))) +\n thresholdMatrix[1] * vec4(equal(i, vec4(4.0, 5.0, 6.0, 7.0))) +\n thresholdMatrix[2] * vec4(equal(i, vec4(8.0, 9.0, 10.0, 11.0))) +\n thresholdMatrix[3] * vec4(equal(i, vec4(12.0, 13.0, 14.0, 15.0)));\n at = v.x + v.y + v.z + v.w;\n #else\n at = thresholdMatrix[ci][ri];\n #endif\n\n if (ta < 0.99 && (ta < 0.01 || ta < at)) {\n discard;\n }\n #elif defined(dRenderVariant_colorWboit)\n material.a *= ta;\n #endif\n #endif\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=assign-material-color.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_position = void 0;
|
|
4
4
|
exports.assign_position = "\nmat4 model = uModel * aTransform;\nmat4 modelView = uView * model;\n#ifdef dGeometryType_textureMesh\n vec3 position = readFromTexture(tPosition, VertexID, uGeoTexDim).xyz;\n#else\n vec3 position = aPosition;\n#endif\nvec4 position4 = vec4(position, 1.0);\n// for accessing tColorGrid in vert shader and for clipping in frag shader\nvModelPosition = (model * position4).xyz;\nvec4 mvPosition = modelView * position4;\nvViewPosition = mvPosition.xyz;\ngl_Position = uProjection * mvPosition;\n";
|
|
5
|
-
//# sourceMappingURL=assign-position.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.assign_size = void 0;
|
|
4
4
|
exports.assign_size = "\n#if defined(dSizeType_uniform)\n float size = uSize;\n#elif defined(dSizeType_attribute)\n float size = aSize;\n#elif defined(dSizeType_instance)\n float size = unpackRGBToInt(readFromTexture(tSize, aInstance, uSizeTexDim).rgb);\n#elif defined(dSizeType_group)\n float size = unpackRGBToInt(readFromTexture(tSize, group, uSizeTexDim).rgb);\n#elif defined(dSizeType_groupInstance)\n float size = unpackRGBToInt(readFromTexture(tSize, aInstance * float(uGroupCount) + group, uSizeTexDim).rgb);\n#endif\n\n#if defined(dSizeType_instance) || defined(dSizeType_group) || defined(dSizeType_groupInstance)\n size /= 100.0; // NOTE factor also set in TypeScript\n#endif\n\nsize *= uSizeFactor;\n";
|
|
5
|
-
//# sourceMappingURL=assign-size.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.check_picking_alpha = void 0;
|
|
4
4
|
exports.check_picking_alpha = "\nfloat viewZ = depthToViewZ(uIsOrtho, fragmentDepth, uNear, uFar);\nfloat fogFactor = smoothstep(uFogNear, uFogFar, abs(viewZ));\nfloat alpha = (1.0 - fogFactor) * uAlpha;\nif (uAlpha < uPickingAlphaThreshold || alpha < 0.1)\n discard; // ignore so the element below can be picked\n";
|
|
5
|
-
//# sourceMappingURL=check-picking-alpha.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.clip_instance = void 0;
|
|
4
4
|
exports.clip_instance = "\n#if defined(dClipVariant_instance) && dClipObjectCount != 0\n int flag = 0;\n #if defined(dClipping)\n flag = int(floor(vClipping * 255.0 + 0.5));\n #endif\n\n vec4 mCenter = uModel * aTransform * vec4(uInvariantBoundingSphere.xyz, 1.0);\n if (clipTest(vec4(mCenter.xyz, uInvariantBoundingSphere.w), flag))\n // move out of [ -w, +w ] to 'discard' in vert shader\n gl_Position.z = 2.0 * gl_Position.w;\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=clip-instance.glsl.js.map
|
|
@@ -2,4 +2,3 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.clip_pixel = void 0;
|
|
4
4
|
exports.clip_pixel = "\n#if defined(dClipVariant_pixel) && dClipObjectCount != 0\n #if defined(dClipping)\n int clippingFlag = int(floor(vClipping * 255.0 + 0.5));\n #else\n int clippingFlag = 0;\n #endif\n\n if (clipTest(vec4(vModelPosition, 0.0), clippingFlag))\n discard;\n#endif\n";
|
|
5
|
-
//# sourceMappingURL=clip-pixel.glsl.js.map
|