npm - molstar - Versions diffs - 3.0.2 → 3.3.0 - Mend

molstar 3.0.2 → 3.3.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (2351) hide show

package/lib/mol-model/structure/structure.js CHANGED Viewed

@@ -12,4 +12,3 @@ import { StructureProperties } from './structure/properties';
 export { StructureElement, Bond, Structure, Unit, StructureSymmetry, StructureProperties };
 export * from './structure/unit/rings';
 export * from './export/mmcif';
-//# sourceMappingURL=structure.js.map

package/lib/mol-model/structure/topology/topology.js CHANGED Viewed

@@ -18,4 +18,3 @@ var Topology;
     }
     Topology.create = create;
 })(Topology || (Topology = {}));
-//# sourceMappingURL=topology.js.map

package/lib/mol-model/structure/topology.js CHANGED Viewed

@@ -4,4 +4,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 export * from './topology/topology';
-//# sourceMappingURL=topology.js.map

package/lib/mol-model/structure/trajectory.js CHANGED Viewed

@@ -16,4 +16,3 @@ var ArrayTrajectory = /** @class */ (function () {
     return ArrayTrajectory;
 }());
 export { ArrayTrajectory };
-//# sourceMappingURL=trajectory.js.map

package/lib/mol-model/structure/util.js CHANGED Viewed

@@ -49,4 +49,3 @@ export function getPositions(unit, indices) {
     }
     return positions;
 }
-//# sourceMappingURL=util.js.map

package/lib/mol-model/structure.js CHANGED Viewed

@@ -10,4 +10,3 @@ export * from './structure/model';
 export * from './structure/structure';
 export * from './structure/query';
 export * from './structure/trajectory';
-//# sourceMappingURL=structure.js.map

package/lib/mol-model/volume/grid.js CHANGED Viewed

@@ -61,4 +61,3 @@ var Grid;
     Grid.getHistogram = getHistogram;
 })(Grid || (Grid = {}));
 export { Grid };
-//# sourceMappingURL=grid.js.map

package/lib/mol-model/volume/volume.js CHANGED Viewed

@@ -186,4 +186,3 @@ export var Volume;
         Cell.getBoundingSphere = getBoundingSphere;
     })(Cell = Volume.Cell || (Volume.Cell = {}));
 })(Volume || (Volume = {}));
-//# sourceMappingURL=volume.js.map

package/lib/mol-model/volume.js CHANGED Viewed

@@ -6,4 +6,3 @@
  */
 export * from './volume/volume';
 export * from './volume/grid';
-//# sourceMappingURL=volume.js.map

package/lib/mol-model-formats/format.js CHANGED Viewed

@@ -5,4 +5,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 export {};
-//# sourceMappingURL=format.js.map

package/lib/mol-model-formats/shape/ply.js CHANGED Viewed

@@ -288,4 +288,3 @@ export function shapeFromPly(source, params) {
         });
     }); });
 }
-//# sourceMappingURL=ply.js.map

package/lib/mol-model-formats/structure/basic/atomic.js CHANGED Viewed

@@ -167,4 +167,3 @@ export function getAtomicHierarchyAndConformation(atom_site, sourceIndex, entiti
     var conformation = getConformation(atom_site);
     return { sameAsPrevious: sameAsPrevious, hierarchy: hierarchy, conformation: conformation, chainOperatorMapping: chainOperatorMapping };
 }
-//# sourceMappingURL=atomic.js.map

package/lib/mol-model-formats/structure/basic/coarse.js CHANGED Viewed

@@ -77,4 +77,3 @@ function getData(data) {
     var entity_id = data.entity_id, seq_id_begin = data.seq_id_begin, seq_id_end = data.seq_id_end, asym_id = data.asym_id;
     return __assign({ count: entity_id.rowCount, entity_id: entity_id, asym_id: asym_id, seq_id_begin: seq_id_begin, seq_id_end: seq_id_end }, getSegments(asym_id, seq_id_begin, seq_id_end));
 }
-//# sourceMappingURL=coarse.js.map

package/lib/mol-model-formats/structure/basic/entities.js CHANGED Viewed

@@ -129,4 +129,3 @@ export function getEntitiesWithPRD(data, entities, structAsymMap) {
     var prdIdColumn = Column.ofArray({ array: prdIds, schema: Column.Schema.str });
     return __assign(__assign({}, entities), { prd_id: prdIdColumn });
 }
-//# sourceMappingURL=entities.js.map

package/lib/mol-model-formats/structure/basic/parser.js CHANGED Viewed

@@ -238,4 +238,3 @@ function readIntegrative(ctx, data, properties, format) {
         });
     });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-model-formats/structure/basic/properties.js CHANGED Viewed

@@ -122,4 +122,3 @@ export function getStructAsymMap(atomic, data) {
     }
     return map;
 }
-//# sourceMappingURL=properties.js.map

package/lib/mol-model-formats/structure/basic/schema.d.ts CHANGED Viewed

@@ -125,6 +125,11 @@ export declare const BasicSchema: {
         pdbx_PDB_ins_code: import("../../../mol-data/db/column").Column.Schema.Str;
         pdbx_PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
         pdbx_formal_charge: import("../../../mol-data/db/column").Column.Schema.Int;
+        pdbx_label_index: import("../../../mol-data/db/column").Column.Schema.Int;
+        pdbx_sifts_xref_db_name: import("../../../mol-data/db/column").Column.Schema.Str;
+        pdbx_sifts_xref_db_acc: import("../../../mol-data/db/column").Column.Schema.Str;
+        pdbx_sifts_xref_db_num: import("../../../mol-data/db/column").Column.Schema.Str;
+        pdbx_sifts_xref_db_res: import("../../../mol-data/db/column").Column.Schema.Str;
         ihm_model_id: import("../../../mol-data/db/column").Column.Schema.Int;
     };
     ihm_sphere_obj_site: {

package/lib/mol-model-formats/structure/basic/schema.js CHANGED Viewed

@@ -38,4 +38,3 @@ export function createBasic(data) {
     }
     return basic;
 }
-//# sourceMappingURL=schema.js.map

package/lib/mol-model-formats/structure/basic/sequence.js CHANGED Viewed

@@ -33,4 +33,3 @@ export function getSequence(data, entities, atomicHierarchy, coarseHierarchy) {
     }
     return { byEntityKey: byEntityKey, sequences: sequences };
 }
-//# sourceMappingURL=sequence.js.map

package/lib/mol-model-formats/structure/basic/sort.js CHANGED Viewed

@@ -65,4 +65,3 @@ export function sortAtomSite(ctx, atom_site, start, end) {
         });
     });
 }
-//# sourceMappingURL=sort.js.map

package/lib/mol-model-formats/structure/basic/util.js CHANGED Viewed

@@ -15,4 +15,3 @@ export function getModelGroupName(model_id, data) {
     }
     return '';
 }
-//# sourceMappingURL=util.js.map

package/lib/mol-model-formats/structure/cif-core.js CHANGED Viewed

@@ -252,4 +252,3 @@ export function trajectoryFromCifCore(frame) {
     var format = CifCoreFormat.fromFrame(frame);
     return Task.create('Parse CIF Core', function (ctx) { return getModels(format.data.db, format, ctx); });
 }
-//# sourceMappingURL=cif-core.js.map

package/lib/mol-model-formats/structure/common/component.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/mol-model-formats/structure/common/component.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2019-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -24,7 +24,7 @@ var DnaAtomIdsList = [
 ];
 /** Used to reduce false positives for atom name-based type guessing */
 var NonPolymerNames = new Set([
-    'FMN', 'NCN', 'FNS', 'FMA' // Mononucleotides
+    'FMN', 'NCN', 'FNS', 'FMA', 'ATP', 'ADP', 'AMP', 'GTP', 'GDP', 'GMP' // Mononucleotides
 ]);
 var StandardComponents = (function () {
     var map = new Map();
@@ -148,7 +148,7 @@ var ComponentBuilder = /** @class */ (function () {
             else if (WaterNames.has(compId)) {
                 this.set({ id: compId, name: 'WATER', type: 'non-polymer' });
             }
-            else if (NonPolymerNames.has(compId)) {
+            else if (NonPolymerNames.has(compId.toUpperCase())) {
                 this.set({ id: compId, name: this.namesMap.get(compId) || compId, type: 'non-polymer' });
             }
             else {
@@ -179,4 +179,3 @@ var ComponentBuilder = /** @class */ (function () {
     return ComponentBuilder;
 }());
 export { ComponentBuilder };
-//# sourceMappingURL=component.js.map

package/lib/mol-model-formats/structure/common/entity.js CHANGED Viewed

@@ -74,4 +74,3 @@ var EntityBuilder = /** @class */ (function () {
     return EntityBuilder;
 }());
 export { EntityBuilder };
-//# sourceMappingURL=entity.js.map

package/lib/mol-model-formats/structure/common/property.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author David Sehnal <david.sehnal@gmail.com>
  */
 import { Model } from '../../../mol-model/structure';
 import { ModelFormat } from '../../format';
@@ -24,5 +25,7 @@ interface FormatPropertyProvider<T> {
     delete(model: Model): void;
 }
 declare namespace FormatPropertyProvider {
-    function create<T>(descriptor: CustomPropertyDescriptor): FormatPropertyProvider<T>;
+    function create<T>(descriptor: CustomPropertyDescriptor, options?: {
+        asDynamic?: boolean;
+    }): FormatPropertyProvider<T>;
 }

package/lib/mol-model-formats/structure/common/property.js CHANGED Viewed

@@ -1,7 +1,8 @@
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2020-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author David Sehnal <david.sehnal@gmail.com>
  */
 var FormatRegistry = /** @class */ (function () {
     function FormatRegistry() {
@@ -29,7 +30,7 @@ var FormatRegistry = /** @class */ (function () {
 export { FormatPropertyProvider };
 var FormatPropertyProvider;
 (function (FormatPropertyProvider) {
-    function create(descriptor) {
+    function create(descriptor, options) {
         var name = descriptor.name;
         var formatRegistry = new FormatRegistry();
         return {
@@ -39,25 +40,35 @@ var FormatPropertyProvider;
                 return formatRegistry.isApplicable(model);
             },
             get: function (model) {
-                if (model._staticPropertyData[name])
-                    return model._staticPropertyData[name];
+                var store = (options === null || options === void 0 ? void 0 : options.asDynamic) ? model._dynamicPropertyData : model._staticPropertyData;
+                if (store[name])
+                    return store[name];
                 if (model.customProperties.has(descriptor))
                     return;
                 var obtain = formatRegistry.get(model.sourceData.kind);
                 if (!obtain)
                     return;
-                model._staticPropertyData[name] = obtain(model);
+                store[name] = obtain(model);
                 model.customProperties.add(descriptor);
-                return model._staticPropertyData[name];
+                return store[name];
             },
             set: function (model, value) {
-                model._staticPropertyData[name] = value;
+                if (options === null || options === void 0 ? void 0 : options.asDynamic) {
+                    model._dynamicPropertyData[name] = value;
+                }
+                else {
+                    model._staticPropertyData[name] = value;
+                }
             },
             delete: function (model) {
-                delete model._staticPropertyData[name];
+                if (options === null || options === void 0 ? void 0 : options.asDynamic) {
+                    delete model._dynamicPropertyData[name];
+                }
+                else {
+                    delete model._staticPropertyData[name];
+                }
             }
         };
     }
     FormatPropertyProvider.create = create;
 })(FormatPropertyProvider || (FormatPropertyProvider = {}));
-//# sourceMappingURL=property.js.map

package/lib/mol-model-formats/structure/common/util.js CHANGED Viewed

@@ -21,4 +21,3 @@ function _getChainId(index) {
     return chainId;
 }
 export var getChainId = memoize1(_getChainId);
-//# sourceMappingURL=util.js.map

package/lib/mol-model-formats/structure/cube.js CHANGED Viewed

@@ -71,4 +71,3 @@ var MolFormat;
 export function trajectoryFromCube(cube) {
     return Task.create('Parse Cube', function (ctx) { return getModels(cube, ctx); });
 }
-//# sourceMappingURL=cube.js.map

package/lib/mol-model-formats/structure/dcd.js CHANGED Viewed

@@ -60,4 +60,3 @@ export function coordinatesFromDcd(dcdFile) {
         });
     }); });
 }
-//# sourceMappingURL=dcd.js.map

package/lib/mol-model-formats/structure/gro.js CHANGED Viewed

@@ -120,4 +120,3 @@ export function trajectoryFromGRO(gro) {
         });
     }); });
 }
-//# sourceMappingURL=gro.js.map

package/lib/mol-model-formats/structure/mmcif.js CHANGED Viewed

@@ -87,4 +87,3 @@ export function trajectoryFromMmCIF(frame) {
     var format = MmcifFormat.fromFrame(frame);
     return Task.create('Create mmCIF Model', function (ctx) { return createModels(format.data.db, format, ctx); });
 }
-//# sourceMappingURL=mmcif.js.map

package/lib/mol-model-formats/structure/mol.js CHANGED Viewed

@@ -97,4 +97,3 @@ var MolFormat;
 export function trajectoryFromMol(mol) {
     return Task.create('Parse MOL', function (ctx) { return getMolModels(mol, void 0, ctx); });
 }
-//# sourceMappingURL=mol.js.map

package/lib/mol-model-formats/structure/mol2.js CHANGED Viewed

@@ -96,11 +96,11 @@ function getModels(mol2, ctx) {
                         flag = Column.ofIntArray(Column.mapToArray(bonds.bond_type, function (x) {
                             switch (x) {
                                 case 'ar': // aromatic
+                                case 'am': // amide
                                     return 16 /* Aromatic */ | 1 /* Covalent */;
                                 case 'du': // dummy
                                 case 'nc': // not connected
                                     return 0 /* None */;
-                                case 'am': // amide
                                 case 'un': // unknown
                                 default:
                                     return 1 /* Covalent */;
@@ -157,4 +157,3 @@ var Mol2Format;
 export function trajectoryFromMol2(mol2) {
     return Task.create('Parse MOL2', function (ctx) { return getModels(mol2, ctx); });
 }
-//# sourceMappingURL=mol2.js.map

package/lib/mol-model-formats/structure/pdb/anisotropic.js CHANGED Viewed

@@ -121,4 +121,3 @@ export function addAnisotropic(sites, model, data, s, e) {
     // TODO
     sites.index++;
 }
-//# sourceMappingURL=anisotropic.js.map

package/lib/mol-model-formats/structure/pdb/assembly.js CHANGED Viewed

@@ -234,4 +234,3 @@ export function parseMtrix(lines, lineStart, lineEnd) {
     }
     return [CifCategory.ofFields('struct_ncs_oper', struct_ncs_oper)];
 }
-//# sourceMappingURL=assembly.js.map

package/lib/mol-model-formats/structure/pdb/atom-site.js CHANGED Viewed

@@ -136,4 +136,3 @@ export function addAtom(sites, model, data, s, e, isPdbqt) {
     sites.pdbx_PDB_model_num[sites.index] = model;
     sites.index++;
 }
-//# sourceMappingURL=atom-site.js.map

package/lib/mol-model-formats/structure/pdb/conect.js CHANGED Viewed

@@ -68,4 +68,3 @@ export function parseConect(lines, lineStart, lineEnd, sites) {
     };
     return CifCategory.ofFields('struct_conn', struct_conn);
 }
-//# sourceMappingURL=conect.js.map

package/lib/mol-model-formats/structure/pdb/entity.js CHANGED Viewed

@@ -105,4 +105,3 @@ export function parseHetnam(lines, lineStart, lineEnd) {
     }
     return hetnams;
 }
-//# sourceMappingURL=entity.js.map

package/lib/mol-model-formats/structure/pdb/secondary-structure.js CHANGED Viewed

@@ -197,4 +197,3 @@ export function parseSheet(lines, lineStart, lineEnd) {
     };
     return CifCategory.ofFields('struct_sheet_range', struct_sheet_range);
 }
-//# sourceMappingURL=secondary-structure.js.map

package/lib/mol-model-formats/structure/pdb/to-cif.js CHANGED Viewed

@@ -224,4 +224,3 @@ export function pdbToMmCif(pdb) {
         });
     });
 }
-//# sourceMappingURL=to-cif.js.map

package/lib/mol-model-formats/structure/pdb.js CHANGED Viewed

@@ -64,4 +64,3 @@ export function trajectoryFromPDB(pdb) {
         });
     }); });
 }
-//# sourceMappingURL=pdb.js.map

package/lib/mol-model-formats/structure/property/anisotropic.js CHANGED Viewed

@@ -66,4 +66,3 @@ var AtomSiteAnisotrop;
     }
     AtomSiteAnisotrop.getElementToAnsiotropFromLabel = getElementToAnsiotropFromLabel;
 })(AtomSiteAnisotrop || (AtomSiteAnisotrop = {}));
-//# sourceMappingURL=anisotropic.js.map

package/lib/mol-model-formats/structure/property/assembly.js CHANGED Viewed

@@ -119,4 +119,3 @@ function parseOperatorList(value) {
     });
     return ret;
 }
-//# sourceMappingURL=assembly.js.map

package/lib/mol-model-formats/structure/property/atoms/chem_comp.js CHANGED Viewed

@@ -81,4 +81,3 @@ export var ComponentAtom;
     }());
     ComponentAtom.Entry = Entry;
 })(ComponentAtom || (ComponentAtom = {}));
-//# sourceMappingURL=chem_comp.js.map

package/lib/mol-model-formats/structure/property/bonds/chem_comp.d.ts CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017-2020 Mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 Mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>

package/lib/mol-model-formats/structure/property/bonds/chem_comp.js CHANGED Viewed

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2017-2020 Mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2017-2022 Mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
@@ -45,10 +45,10 @@ export var ComponentBond;
     function getEntriesFromChemCompBond(data) {
         var entries = new Map();
         function addEntry(id) {
-            // weird behavior when 'PRO' is requested - will report a single bond between N and H because a later operation would override real content
-            if (entries.has(id)) {
+            // weird behavior when 'PRO' is requested - will report a single bond
+            // between N and H because a later operation would override real content
+            if (entries.has(id))
                 return entries.get(id);
-            }
             var e = new Entry(id);
             entries.set(id, e);
             return e;
@@ -69,8 +69,10 @@ export var ComponentBond;
             if (aromatic)
                 flags |= 16 /* Aromatic */;
             switch (order.toLowerCase()) {
-                case 'doub':
                 case 'delo':
+                    flags |= 16 /* Aromatic */;
+                    break;
+                case 'doub':
                     ord = 2;
                     break;
                 case 'trip':
@@ -111,4 +113,3 @@ export var ComponentBond;
     }());
     ComponentBond.Entry = Entry;
 })(ComponentBond || (ComponentBond = {}));
-//# sourceMappingURL=chem_comp.js.map

package/lib/mol-model-formats/structure/property/bonds/index-pair.d.ts CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2019-2022 Mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author David Sehnal <david.sehnal@gmail.com>
  */
 import { CustomPropertyDescriptor } from '../../../../mol-model/custom-property';
 import { IntAdjacencyGraph } from '../../../../mol-math/graph';

package/lib/mol-model-formats/structure/property/bonds/index-pair.js CHANGED Viewed

@@ -2,6 +2,7 @@
  * Copyright (c) 2019-2022 Mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author David Sehnal <david.sehnal@gmail.com>
  */
 import { __assign } from "tslib";
 import { IntAdjacencyGraph } from '../../../../mol-math/graph';
@@ -26,7 +27,7 @@ export var IndexPairBonds;
     IndexPairBonds.Descriptor = {
         name: 'index_pair_bonds',
     };
-    IndexPairBonds.Provider = FormatPropertyProvider.create(IndexPairBonds.Descriptor);
+    IndexPairBonds.Provider = FormatPropertyProvider.create(IndexPairBonds.Descriptor, { asDynamic: true });
     IndexPairBonds.DefaultProps = {
         /**
          * If negative, test using element-based threshold, otherwise distance in Angstrom.
@@ -56,4 +57,3 @@ export var IndexPairBonds;
     }
     IndexPairBonds.fromData = fromData;
 })(IndexPairBonds || (IndexPairBonds = {}));
-//# sourceMappingURL=index-pair.js.map

package/lib/mol-model-formats/structure/property/bonds/struct_conn.js CHANGED Viewed

@@ -161,4 +161,3 @@ export var StructConn;
     }
     StructConn.getEntriesFromStructConn = getEntriesFromStructConn;
 })(StructConn || (StructConn = {}));
-//# sourceMappingURL=struct_conn.js.map

package/lib/mol-model-formats/structure/property/partial-charge.js CHANGED Viewed

@@ -12,4 +12,3 @@ var AtomPartialCharge;
     };
     AtomPartialCharge.Provider = FormatPropertyProvider.create(AtomPartialCharge.Descriptor);
 })(AtomPartialCharge || (AtomPartialCharge = {}));
-//# sourceMappingURL=partial-charge.js.map

package/lib/mol-model-formats/structure/property/secondary-structure.js CHANGED Viewed

@@ -184,4 +184,3 @@ function assignSecondaryStructureRanges(hierarchy, coordinates, map, data) {
         }
     }
 }
-//# sourceMappingURL=secondary-structure.js.map

package/lib/mol-model-formats/structure/property/symmetry.js CHANGED Viewed

@@ -71,4 +71,3 @@ function getNcsOperators(struct_ncs_oper) {
     }
     return opers;
 }
-//# sourceMappingURL=symmetry.js.map

package/lib/mol-model-formats/structure/psf.js CHANGED Viewed

@@ -117,4 +117,3 @@ export function topologyFromPsf(psf) {
         });
     }); });
 }
-//# sourceMappingURL=psf.js.map

package/lib/mol-model-formats/structure/sdf.js CHANGED Viewed

@@ -20,4 +20,3 @@ var SdfFormat;
 export function trajectoryFromSdf(mol) {
     return Task.create('Parse SDF', function (ctx) { return getMolModels(mol.molFile, SdfFormat.create(mol), ctx); });
 }
-//# sourceMappingURL=sdf.js.map

package/lib/mol-model-formats/structure/util.js CHANGED Viewed

@@ -71,4 +71,3 @@ export function guessElementSymbolString(str) {
         return c;
     return ''; // no reasonable guess, return empty string
 }
-//# sourceMappingURL=util.js.map

package/lib/mol-model-formats/structure/xtc.js CHANGED Viewed

@@ -41,4 +41,3 @@ export function coordinatesFromXtc(file) {
         });
     }); });
 }
-//# sourceMappingURL=xtc.js.map

package/lib/mol-model-formats/structure/xyz.js CHANGED Viewed

@@ -86,4 +86,3 @@ var XyzFormat;
 export function trajectoryFromXyz(mol) {
     return Task.create('Parse XYZ', function (ctx) { return getModels(mol, ctx); });
 }
-//# sourceMappingURL=xyz.js.map

package/lib/mol-model-formats/volume/ccp4.js CHANGED Viewed

@@ -89,4 +89,3 @@ var Ccp4Format;
     }
     Ccp4Format.create = create;
 })(Ccp4Format || (Ccp4Format = {}));
-//# sourceMappingURL=ccp4.js.map

package/lib/mol-model-formats/volume/cube.js CHANGED Viewed

@@ -69,4 +69,3 @@ var CubeFormat;
     }
     CubeFormat.create = create;
 })(CubeFormat || (CubeFormat = {}));
-//# sourceMappingURL=cube.js.map

package/lib/mol-model-formats/volume/density-server.js CHANGED Viewed

@@ -55,4 +55,3 @@ var DscifFormat;
     }
     DscifFormat.create = create;
 })(DscifFormat || (DscifFormat = {}));
-//# sourceMappingURL=density-server.js.map

package/lib/mol-model-formats/volume/dsn6.js CHANGED Viewed

@@ -61,4 +61,3 @@ var Dsn6Format;
     }
     Dsn6Format.create = create;
 })(Dsn6Format || (Dsn6Format = {}));
-//# sourceMappingURL=dsn6.js.map

package/lib/mol-model-formats/volume/dx.js CHANGED Viewed

@@ -52,4 +52,3 @@ var DxFormat;
     }
     DxFormat.create = create;
 })(DxFormat || (DxFormat = {}));
-//# sourceMappingURL=dx.js.map

package/lib/mol-model-formats/volume/property.js CHANGED Viewed

@@ -30,4 +30,3 @@ var RecommendedIsoValue;
     };
     RecommendedIsoValue.Provider = PropertyProvider.create(RecommendedIsoValue.Descriptor);
 })(RecommendedIsoValue || (RecommendedIsoValue = {}));
-//# sourceMappingURL=property.js.map

package/lib/mol-model-props/common/custom-element-property.js CHANGED Viewed

@@ -104,4 +104,3 @@ var CustomElementProperty;
         };
     }
 })(CustomElementProperty || (CustomElementProperty = {}));
-//# sourceMappingURL=custom-element-property.js.map

package/lib/mol-model-props/common/custom-model-property.js CHANGED Viewed

@@ -104,4 +104,3 @@ var CustomModelProperty;
     }
     CustomModelProperty.createSimple = createSimple;
 })(CustomModelProperty || (CustomModelProperty = {}));
-//# sourceMappingURL=custom-model-property.js.map

package/lib/mol-model-props/common/custom-property.js CHANGED Viewed

@@ -64,4 +64,3 @@ var CustomProperty;
     }());
     CustomProperty.Registry = Registry;
 })(CustomProperty || (CustomProperty = {}));
-//# sourceMappingURL=custom-property.js.map

package/lib/mol-model-props/common/custom-structure-property.js CHANGED Viewed

@@ -108,4 +108,3 @@ var CustomStructureProperty;
     }
     CustomStructureProperty.createSimple = createSimple;
 })(CustomStructureProperty || (CustomStructureProperty = {}));
-//# sourceMappingURL=custom-structure-property.js.map

package/lib/mol-model-props/common/wrapper.js CHANGED Viewed

@@ -40,4 +40,3 @@ var PropertyWrapper;
     PropertyWrapper.tryGetInfoFromCif = tryGetInfoFromCif;
 })(PropertyWrapper || (PropertyWrapper = {}));
 export { PropertyWrapper };
-//# sourceMappingURL=wrapper.js.map

package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/area.js CHANGED Viewed

@@ -94,4 +94,3 @@ function computeRange(ctx, begin, end) {
         area[serialResidueIndex[aI]] += scalingConstant * accessiblePointCount * radius1 * radius1;
     }
 }
-//# sourceMappingURL=area.js.map

package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/common.js CHANGED Viewed

@@ -40,4 +40,3 @@ export var MaxAsa = {
     'VAL': 165.0
 };
 export var DefaultMaxAsa = 121.0;
-//# sourceMappingURL=common.js.map

package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley/radii.js CHANGED Viewed

@@ -141,4 +141,3 @@ function handleNonStandardCase(element) {
     }
     return index;
 }
-//# sourceMappingURL=radii.js.map

package/lib/mol-model-props/computed/accessible-surface-area/shrake-rupley.js CHANGED Viewed

@@ -117,4 +117,3 @@ var AccessibleSurfaceArea;
     }
     AccessibleSurfaceArea.getFlag = getFlag;
 })(AccessibleSurfaceArea || (AccessibleSurfaceArea = {}));
-//# sourceMappingURL=shrake-rupley.js.map