molstar 3.0.2 → 3.3.0

package/lib/mol-gl/shader/ssao.frag.js

@@ -5,4 +5,3 @@
  * @author Áron Samuel Kovács <aron.kovacs@mail.muni.cz>
  */
 export var ssao_frag = "\nprecision highp float;\nprecision highp int;\nprecision highp sampler2D;\n\n#include common\n\nuniform sampler2D tDepth;\nuniform vec2 uTexSize;\nuniform vec4 uBounds;\n\nuniform vec3 uSamples[dNSamples];\n\nuniform mat4 uProjection;\nuniform mat4 uInvProjection;\n\nuniform float uRadius;\nuniform float uBias;\n\nfloat smootherstep(float edge0, float edge1, float x) {\n    x = clamp((x - edge0) / (edge1 - edge0), 0.0, 1.0);\n    return x * x * x * (x * (x * 6.0 - 15.0) + 10.0);\n}\n\nfloat noise(const in vec2 coords) {\n    float a = 12.9898;\n    float b = 78.233;\n    float c = 43758.5453;\n    float dt = dot(coords, vec2(a,b));\n    float sn = mod(dt, PI);\n    return abs(fract(sin(sn) * c)); // is abs necessary?\n}\n\nvec2 getNoiseVec2(const in vec2 coords) {\n    return vec2(noise(coords), noise(coords + vec2(PI, 2.71828)));\n}\n\nbool isBackground(const in float depth) {\n    return depth == 1.0;\n}\n\nbool outsideBounds(const in vec2 p) {\n    return p.x < uBounds.x || p.y < uBounds.y || p.x > uBounds.z || p.y > uBounds.w;\n}\n\nfloat getDepth(const in vec2 coords) {\n    return outsideBounds(coords) ? 1.0 : unpackRGBAToDepth(texture2D(tDepth, coords));\n}\n\nvec3 normalFromDepth(const in float depth, const in float depth1, const in float depth2, vec2 offset1, vec2 offset2) {\n    vec3 p1 = vec3(offset1, depth1 - depth);\n    vec3 p2 = vec3(offset2, depth2 - depth);\n\n    vec3 normal = cross(p1, p2);\n    normal.z = -normal.z;\n\n    return normalize(normal);\n}\n\n// StarCraft II Ambient Occlusion by [Filion and McNaughton 2008]\nvoid main(void) {\n    vec2 invTexSize = 1.0 / uTexSize;\n    vec2 selfCoords = gl_FragCoord.xy * invTexSize;\n\n    float selfDepth = getDepth(selfCoords);\n    vec2 selfPackedDepth = packUnitIntervalToRG(selfDepth);\n\n    if (isBackground(selfDepth)) {\n        gl_FragColor = vec4(packUnitIntervalToRG(0.0), selfPackedDepth);\n        return;\n    }\n\n    vec2 offset1 = vec2(0.0, invTexSize.y);\n    vec2 offset2 = vec2(invTexSize.x, 0.0);\n\n    float selfDepth1 = getDepth(selfCoords + offset1);\n    float selfDepth2 = getDepth(selfCoords + offset2);\n\n    vec3 selfViewNormal = normalFromDepth(selfDepth, selfDepth1, selfDepth2, offset1, offset2);\n    vec3 selfViewPos = screenSpaceToViewSpace(vec3(selfCoords, selfDepth), uInvProjection);\n\n    vec3 randomVec = normalize(vec3(getNoiseVec2(selfCoords) * 2.0 - 1.0, 0.0));\n\n    vec3 tangent = normalize(randomVec - selfViewNormal * dot(randomVec, selfViewNormal));\n    vec3 bitangent = cross(selfViewNormal, tangent);\n    mat3 TBN = mat3(tangent, bitangent, selfViewNormal);\n\n    float occlusion = 0.0;\n    for(int i = 0; i < dNSamples; i++){\n        vec3 sampleViewPos = TBN * uSamples[i];\n        sampleViewPos = selfViewPos + sampleViewPos * uRadius;\n\n        vec4 offset = vec4(sampleViewPos, 1.0);\n        offset = uProjection * offset;\n        offset.xyz = (offset.xyz / offset.w) * 0.5 + 0.5;\n\n        float sampleViewZ = screenSpaceToViewSpace(vec3(offset.xy, getDepth(offset.xy)), uInvProjection).z;\n\n        occlusion += step(sampleViewPos.z + 0.025, sampleViewZ) * smootherstep(0.0, 1.0, uRadius / abs(selfViewPos.z - sampleViewZ));\n    }\n    occlusion = 1.0 - (uBias * occlusion / float(dNSamples));\n\n    vec2 packedOcclusion = packUnitIntervalToRG(occlusion);\n\n    gl_FragColor = vec4(packedOcclusion, selfPackedDepth);\n}\n";
-//# sourceMappingURL=ssao.frag.js.map

package/lib/mol-gl/shader/text.frag.js

@@ -4,4 +4,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 export var text_frag = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include common_frag_params\n#include color_frag_params\n#include common_clip\n\nuniform sampler2D tFont;\n\nuniform vec3 uBorderColor;\nuniform float uBorderWidth;\nuniform vec3 uBackgroundColor;\nuniform float uBackgroundOpacity;\n\nvarying vec2 vTexCoord;\n\nconst float smoothness = 32.0;\nconst float gamma = 2.2;\n\nvoid main2(){\n    gl_FragColor = vec4(1.0, 0.0, 0.0, 1.0);\n}\n\nvoid main(){\n    #include clip_pixel\n\n    float fragmentDepth = gl_FragCoord.z;\n    bool interior = false;\n    #include assign_material_color\n\n    if (vTexCoord.x > 1.0) {\n        gl_FragColor = vec4(uBackgroundColor, uBackgroundOpacity * material.a);\n    } else {\n        // retrieve signed distance\n        float sdf = texture2D(tFont, vTexCoord).a + uBorderWidth;\n\n        // perform adaptive anti-aliasing of the edges\n        float w = clamp(smoothness * (abs(dFdx(vTexCoord.x)) + abs(dFdy(vTexCoord.y))), 0.0, 0.5);\n        float a = smoothstep(0.5 - w, 0.5 + w, sdf);\n\n        // gamma correction for linear attenuation\n        a = pow(a, 1.0 / gamma);\n\n        if (a < 0.5) discard;\n        material.a *= a;\n\n        // add border\n        float t = 0.5 + uBorderWidth;\n        if (uBorderWidth > 0.0 && sdf < t) {\n            material.xyz = mix(uBorderColor, material.xyz, smoothstep(t - w, t, sdf));\n        }\n\n        gl_FragColor = material;\n    }\n\n    #if defined(dRenderVariant_pick)\n        #include check_picking_alpha\n    #elif defined(dRenderVariant_depth)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_marking)\n        gl_FragColor = material;\n    #elif defined(dRenderVariant_color)\n        #include apply_marker_color\n        #include apply_fog\n        #include wboit_write\n    #endif\n}\n";
-//# sourceMappingURL=text.frag.js.map

package/lib/mol-gl/shader/text.vert.js

@@ -4,4 +4,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 export var text_vert = "\nprecision highp float;\nprecision highp int;\n\n#include common\n#include read_from_texture\n#include common_vert_params\n#include color_vert_params\n#include size_vert_params\n#include common_clip\n\nuniform mat4 uModelView;\n\nattribute vec3 aPosition;\nattribute vec2 aMapping;\nattribute float aDepth;\nattribute vec2 aTexCoord;\nattribute mat4 aTransform;\nattribute float aInstance;\nattribute float aGroup;\n\nuniform float uOffsetX;\nuniform float uOffsetY;\nuniform float uOffsetZ;\n\n// uniform bool ortho;\nuniform float uPixelRatio;\nuniform vec4 uViewport;\n\nvarying vec2 vTexCoord;\n\n#include matrix_scale\n\nvoid main(void){\n    #include assign_group\n    #include assign_color_varying\n    #include assign_marker_varying\n    #include assign_clipping_varying\n    #include assign_size\n\n    vTexCoord = aTexCoord;\n\n    float scale = matrixScale(uModelView);\n\n    float offsetX = uOffsetX * scale;\n    float offsetY = uOffsetY * scale;\n    float offsetZ = (uOffsetZ + aDepth * 0.95) * scale;\n\n    vec4 position4 = vec4(aPosition, 1.0);\n    vec4 mvPosition = uModelView * aTransform * position4;\n\n    vModelPosition = (uModel * aTransform * position4).xyz; // for clipping in frag shader\n\n    // TODO\n    // #ifdef FIXED_SIZE\n    //     if (ortho) {\n    //         scale /= pixelRatio * ((uViewport.w / 2.0) / -uCameraPosition.z) * 0.1;\n    //     } else {\n    //         scale /= pixelRatio * ((uViewport.w / 2.0) / -mvPosition.z) * 0.1;\n    //     }\n    // #endif\n\n    vec4 mvCorner = vec4(mvPosition.xyz, 1.0);\n\n    if (vTexCoord.x == 10.0) { // indicates background plane\n        // move a bit to the back, taking distance to camera into account to avoid z-fighting\n        offsetZ -= 0.001 * distance(uCameraPosition, (uProjection * mvCorner).xyz);\n    }\n\n    mvCorner.xy += aMapping * size * scale;\n    mvCorner.x += offsetX;\n    mvCorner.y += offsetY;\n\n    // TODO\n    // if(ortho){\n    //     mvCorner.xyz += normalize(-uCameraPosition) * offsetZ;\n    // } else {\n    //     mvCorner.xyz += normalize(-mvCorner.xyz) * offsetZ;\n    // }\n    mvCorner.xyz += normalize(-mvCorner.xyz) * offsetZ;\n\n    gl_Position = uProjection * mvCorner;\n\n    vViewPosition = -mvCorner.xyz;\n\n    #include clip_instance\n}\n";
-//# sourceMappingURL=text.vert.js.map

package/lib/mol-gl/shader/util/grid3d-template.frag.js

@@ -4,4 +4,3 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 export var grid3dTemplate_frag = "\nprecision highp float;\nprecision highp int;\nprecision highp sampler2D;\n\nuniform vec2 uQuadShift;\nuniform vec3 uDimensions;\nuniform vec3 uMin;\nuniform vec3 uDelta;\nuniform bool uLittleEndian;\nuniform float uWidth;\n\n#ifdef CUMULATIVE\n    uniform sampler2D tCumulativeSum;\n#endif\n\n{UNIFORMS}\n\n{UTILS}\n\n#include float_to_rgba\n#ifdef CUMULATIVE\n    #include rgba_to_float\n#endif\n\nfloat intDiv(float a, float b) { return float(int(a) / int(b)); }\nfloat intMod(float a, float b) { return a - b * float(int(a) / int(b)); }\n\nvoid main(void) {\n    float offset = floor(gl_FragCoord.x) + floor(gl_FragCoord.y) * uWidth;\n\n    // axis order fast to slow Z, Y, X\n    // TODO: support arbitrary axis orders?\n    float k = intMod(offset, uDimensions.z), kk = intDiv(offset, uDimensions.z);\n    float j = intMod(kk, uDimensions.y);\n    float i = intDiv(kk, uDimensions.y);\n\n    vec3 xyz = uMin + uDelta * vec3(i, j, k);\n\n    {MAIN}\n\n    #ifdef CUMULATIVE\n        float current = rgbaToFloat(texture2D(tCumulativeSum, gl_FragCoord.xy / vec2(uWidth, uWidth)), uLittleEndian);\n    #endif\n    gl_FragColor = floatToRgba({RETURN}, uLittleEndian);\n}\n";
-//# sourceMappingURL=grid3d-template.frag.js.map

package/lib/mol-gl/shader-code.js

@@ -273,4 +273,3 @@ export function addShaderDefines(gl, extensions, defines, shaders) {
         outTypes: shaders.outTypes
     };
 }
-//# sourceMappingURL=shader-code.js.map

package/lib/mol-gl/webgl/buffer.js

@@ -167,4 +167,3 @@ export function createElementsBuffer(gl, array, usageHint) {
             gl.bindBuffer(gl.ELEMENT_ARRAY_BUFFER, buffer.getBuffer());
         } });
 }
-//# sourceMappingURL=buffer.js.map

package/lib/mol-gl/webgl/compat.js

@@ -318,4 +318,3 @@ export function testColorBuffer(gl, type) {
     }
     return true;
 }
-//# sourceMappingURL=compat.js.map

package/lib/mol-gl/webgl/context.js

@@ -298,4 +298,3 @@ export function createContext(gl, props) {
         }
     };
 }
-//# sourceMappingURL=context.js.map

package/lib/mol-gl/webgl/extensions.js

@@ -95,4 +95,3 @@ export function createExtensions(gl) {
         sRGB: sRGB,
     };
 }
-//# sourceMappingURL=extensions.js.map

package/lib/mol-gl/webgl/framebuffer.js

@@ -62,4 +62,3 @@ export function createNullFramebuffer() {
         destroy: function () { }
     };
 }
-//# sourceMappingURL=framebuffer.js.map

package/lib/mol-gl/webgl/program.js

@@ -188,4 +188,3 @@ export function createProgram(gl, state, extensions, getShader, props) {
         }
     };
 }
-//# sourceMappingURL=program.js.map

package/lib/mol-gl/webgl/render-item.js

@@ -325,4 +325,3 @@ export function createRenderItem(ctx, drawMode, shaderCode, schema, values, mate
         }
     };
 }
-//# sourceMappingURL=render-item.js.map

package/lib/mol-gl/webgl/render-target.js

@@ -81,4 +81,3 @@ export function createNullRenderTarget(gl) {
         destroy: function () { }
     };
 }
-//# sourceMappingURL=render-target.js.map

package/lib/mol-gl/webgl/renderbuffer.js

@@ -74,4 +74,3 @@ export function createRenderbuffer(gl, format, attachment, _width, _height) {
         }
     };
 }
-//# sourceMappingURL=renderbuffer.js.map

package/lib/mol-gl/webgl/resources.js

@@ -121,4 +121,3 @@ export function createResources(gl, state, stats, extensions) {
         }
     };
 }
-//# sourceMappingURL=resources.js.map

package/lib/mol-gl/webgl/shader.js

@@ -42,4 +42,3 @@ export function createShader(gl, props) {
         }
     };
 }
-//# sourceMappingURL=shader.js.map

package/lib/mol-gl/webgl/state.js

@@ -140,4 +140,3 @@ export function createState(gl) {
         }
     };
 }
-//# sourceMappingURL=state.js.map

package/lib/mol-gl/webgl/texture.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/mol-gl/webgl/texture.js

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2018-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2018-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
@@ -194,6 +194,9 @@ export function createTexture(gl, extensions, kind, _format, _type, _filter) {
     var loadedData;
     var destroyed = false;
     function define(_width, _height, _depth) {
+        if (_width === 0 || _height === 0 || (isWebGL2(gl) && target === gl.TEXTURE_3D && _depth === 0)) {
+            throw new Error('empty textures are not allowed');
+        }
         if (width === _width && height === _height && depth === (_depth || 0))
             return;
         width = _width, height = _height, depth = _depth || 0;
@@ -208,14 +211,19 @@ export function createTexture(gl, extensions, kind, _format, _type, _filter) {
             throw new Error('unknown texture target');
         }
     }
+    define(1, 1, isWebGL2(gl) && target === gl.TEXTURE_3D ? 1 : 0);
     function load(data, sub) {
         if (sub === void 0) { sub = false; }
+        if (data.width === 0 || data.height === 0 || (!isImage(data) && isWebGL2(gl) && isTexture3d(data, target, gl) && data.depth === 0)) {
+            throw new Error('empty textures are not allowed');
+        }
         gl.bindTexture(target, texture);
         // unpack alignment of 1 since we use textures only for data
         gl.pixelStorei(gl.UNPACK_ALIGNMENT, 1);
         gl.pixelStorei(gl.UNPACK_COLORSPACE_CONVERSION_WEBGL, gl.NONE);
         gl.pixelStorei(gl.UNPACK_PREMULTIPLY_ALPHA_WEBGL, 0);
         if (isImage(data)) {
+            width = data.width, height = data.height;
             gl.pixelStorei(gl.UNPACK_FLIP_Y_WEBGL, false);
             gl.bindTexture(gl.TEXTURE_2D, texture);
             gl.texImage2D(gl.TEXTURE_2D, 0, internalFormat, format, type, data);
@@ -382,4 +390,3 @@ export function createNullTexture(gl) {
         destroy: function () { },
     };
 }
-//# sourceMappingURL=texture.js.map

package/lib/mol-gl/webgl/uniform.js

@@ -101,4 +101,3 @@ export function cloneUniformValues(uniformValues) {
     });
     return clonedValues;
 }
-//# sourceMappingURL=uniform.js.map

package/lib/mol-gl/webgl/vertex-array.js

@@ -62,4 +62,3 @@ export function createVertexArray(gl, extensions, program, attributeBuffers, ele
         }
     };
 }
-//# sourceMappingURL=vertex-array.js.map

package/lib/mol-io/common/ascii.js

@@ -8,4 +8,3 @@ export function asciiWrite(data, str) {
         data[i] = str.charCodeAt(i);
     }
 }
-//# sourceMappingURL=ascii.js.map

package/lib/mol-io/common/binary-cif/array-encoder.js

@@ -390,4 +390,3 @@ export var ArrayEncoding;
     }
     ArrayEncoding.stringArray = stringArray;
 })(ArrayEncoding || (ArrayEncoding = {}));
-//# sourceMappingURL=array-encoder.js.map

package/lib/mol-io/common/binary-cif/classifier.js

@@ -165,4 +165,3 @@ var FloatClassifier;
         return m;
     }
 })(FloatClassifier || (FloatClassifier = {}));
-//# sourceMappingURL=classifier.js.map

package/lib/mol-io/common/binary-cif/decoder.js

@@ -173,4 +173,3 @@ function stringArray(data, encoding) {
     }
     return result;
 }
-//# sourceMappingURL=decoder.js.map

package/lib/mol-io/common/binary-cif/encoding.js

@@ -41,4 +41,3 @@ export var Encoding;
     }
     Encoding.isSignedIntegerDataType = isSignedIntegerDataType;
 })(Encoding || (Encoding = {}));
-//# sourceMappingURL=encoding.js.map

package/lib/mol-io/common/binary-cif.js

@@ -7,4 +7,3 @@ export { decode } from './binary-cif/decoder';
 export * from './binary-cif/encoding';
 export * from './binary-cif/array-encoder';
 export * from './binary-cif/classifier';
-//# sourceMappingURL=binary-cif.js.map

package/lib/mol-io/common/binary.js

@@ -28,4 +28,3 @@ export function uint8ToString(array) {
         return String.fromCharCode.apply(null, array);
     }
 }
-//# sourceMappingURL=binary.js.map

package/lib/mol-io/common/file-handle.js

@@ -49,4 +49,3 @@ export var FileHandle;
     }
     FileHandle.fromBuffer = fromBuffer;
 })(FileHandle || (FileHandle = {}));
-//# sourceMappingURL=file-handle.js.map

package/lib/mol-io/common/msgpack/decode.js

@@ -197,4 +197,3 @@ function parse(state) {
     }
     throw new Error('Unknown type 0x' + type.toString(16));
 }
-//# sourceMappingURL=decode.js.map

package/lib/mol-io/common/msgpack/encode.js

@@ -283,4 +283,3 @@ function encodeInternal(value, view, bytes, offset) {
     }
     throw new Error('Unknown type ' + type);
 }
-//# sourceMappingURL=encode.js.map

package/lib/mol-io/common/simple-buffer.js

@@ -84,4 +84,3 @@ export var SimpleBuffer;
     }
     SimpleBuffer.ensureLittleEndian = ensureLittleEndian;
 })(SimpleBuffer || (SimpleBuffer = {}));
-//# sourceMappingURL=simple-buffer.js.map

package/lib/mol-io/common/typed-array.js

@@ -72,4 +72,3 @@ export function readTypedArray(ctx, file, position, byteCount, valueByteOffset,
         });
     });
 }
-//# sourceMappingURL=typed-array.js.map

package/lib/mol-io/common/utf8.js

@@ -122,4 +122,3 @@ export function utf8ByteCount(str) {
     }
     return count;
 }
-//# sourceMappingURL=utf8.js.map

package/lib/mol-io/reader/ccp4/parser.js

@@ -181,4 +181,3 @@ export function parseFile(file, size) {
 export function parse(buffer, name) {
     return parseFile(FileHandle.fromBuffer(SimpleBuffer.fromUint8Array(buffer), name), buffer.length);
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/ccp4/schema.js

@@ -5,4 +5,3 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 export {};
-//# sourceMappingURL=schema.js.map

package/lib/mol-io/reader/cif/binary/field.js

@@ -47,4 +47,3 @@ export function Field(column) {
             : function (params) { return ColumnHelpers.createAndFillArray(rowCount, float, params); }
     };
 }
-//# sourceMappingURL=field.js.map

package/lib/mol-io/reader/cif/binary/parser.js

@@ -66,4 +66,3 @@ export function parseCifBinary(data) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/cif/data-model.js

@@ -294,4 +294,3 @@ export function getCifFieldType(field) {
         return Column.Schema.float;
     return Column.Schema.int;
 }
-//# sourceMappingURL=data-model.js.map

package/lib/mol-io/reader/cif/schema/bird.d.ts

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.354, IHM 1.17, MA 1.3.3.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
  *
  * @author molstar/ciftools package
  */

package/lib/mol-io/reader/cif/schema/bird.js

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.354, IHM 1.17, MA 1.3.3.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
  *
  * @author molstar/ciftools package
  */
@@ -491,4 +491,3 @@ export var BIRD_Schema = {
     },
 };
 ;
-//# sourceMappingURL=bird.js.map

package/lib/mol-io/reader/cif/schema/ccd-extras.js

@@ -12,4 +12,3 @@ export var ccd_chemCompAtom_schema = {
     charge: CCD_Schema.chem_comp_atom.charge,
     pdbx_stereo_config: CCD_Schema.chem_comp_atom.pdbx_stereo_config
 };
-//# sourceMappingURL=ccd-extras.js.map

package/lib/mol-io/reader/cif/schema/ccd.d.ts

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.354, IHM 1.17, MA 1.3.3.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
  *
  * @author molstar/ciftools package
  */

package/lib/mol-io/reader/cif/schema/ccd.js

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.354, IHM 1.17, MA 1.3.3.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
  *
  * @author molstar/ciftools package
  */
@@ -392,4 +392,3 @@ export var CCD_Schema = {
     },
 };
 ;
-//# sourceMappingURL=ccd.js.map

package/lib/mol-io/reader/cif/schema/cif-core.js

@@ -744,4 +744,3 @@ export var CifCore_Aliases = {
     ],
 };
 ;
-//# sourceMappingURL=cif-core.js.map

package/lib/mol-io/reader/cif/schema/ddl.js

@@ -1,3 +1,2 @@
 "use strict";
 // TODO save frame schema for ddl http://mmcif.wwpdb.org/dictionaries/mmcif_ddl.dic/Index/
-//# sourceMappingURL=ddl.js.map

package/lib/mol-io/reader/cif/schema/density-server.js

@@ -54,4 +54,3 @@ export var DensityServer_Data_Schema = {
         values: float
     }
 };
-//# sourceMappingURL=density-server.js.map

package/lib/mol-io/reader/cif/schema/dic.js

@@ -57,4 +57,3 @@ export var dic_Schema = {
     item_units_list: item_units_list,
     item_units_conversion: item_units_conversion
 };
-//# sourceMappingURL=dic.js.map

package/lib/mol-io/reader/cif/schema/mmcif-extras.js

@@ -22,4 +22,3 @@ export var mmCIF_chemCompBond_schema = __assign(__assign({}, mmCIF_Schema.chem_c
     molstar_protonation_variant: Column.Schema.Str() });
 /** Has `type` extended with 'Ion' and 'Lipid' */
 export var mmCIF_chemComp_schema = __assign(__assign({}, mmCIF_Schema.chem_comp), { type: Column.Schema.Aliased(Column.Schema.str) });
-//# sourceMappingURL=mmcif-extras.js.map

package/lib/mol-io/reader/cif/schema/mmcif.d.ts

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.354, IHM 1.17, MA 1.3.3.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
  *
  * @author molstar/ciftools package
  */
@@ -203,6 +203,28 @@ export declare const mmCIF_Schema: {
          * formal charge assignment normally found in chemical diagrams.
          */
         pdbx_formal_charge: Schema.Int;
+        /**
+         * This data item is an ordinal which identifies distinct chemical components in the atom_site category, both
+         * polymeric and non-polymeric.
+         */
+        pdbx_label_index: Schema.Int;
+        /**
+         * The name of additional external databases with residue level mapping.
+         */
+        pdbx_sifts_xref_db_name: Schema.Str;
+        /**
+         * The accession code related to the additional external database entry.
+         */
+        pdbx_sifts_xref_db_acc: Schema.Str;
+        /**
+         * The sequence position of the external database entry that corresponds
+         * to the residue mapping defined by the SIFTS process.
+         */
+        pdbx_sifts_xref_db_num: Schema.Str;
+        /**
+         * Describes the residue type of the given UniProt match
+         */
+        pdbx_sifts_xref_db_res: Schema.Str;
         /**
          * The model id corresponding to the atom site.
          * This data item is a pointer to _ihm_model_list.model_id
@@ -670,7 +692,7 @@ export declare const mmCIF_Schema: {
         /**
          * An abbreviation that identifies the database.
          */
-        database_id: Schema.Aliased<"AFDB" | "CAS" | "CSD" | "EMDB" | "ICSD" | "MA" | "MDF" | "MODBASE" | "NDB" | "NBS" | "PDB" | "PDF" | "RCSB" | "SMR" | "EBI" | "PDBE" | "BMRB" | "WWPDB" | "PDB_ACC">;
+        database_id: Schema.Aliased<"AlphaFoldDB" | "CAS" | "CSD" | "EMDB" | "ICSD" | "ModelArchive" | "MDF" | "MODBASE" | "NDB" | "NBS" | "PDB" | "PDF" | "RCSB" | "SWISS-MODEL_REPOSITORY" | "EBI" | "PDBE" | "BMRB" | "WWPDB" | "PDB_ACC">;
         /**
          * The code assigned by the database identified in
          * _database_2.database_id.
@@ -2199,6 +2221,10 @@ export declare const mmCIF_Schema: {
         oligomeric_count: Schema.Int;
         /**
          * A description of special aspects of the macromolecular assembly.
+         *
+         * In the PDB, 'representative helical assembly', 'complete point assembly',
+         * 'complete icosahedral assembly', 'software_defined_assembly', 'author_defined_assembly',
+         * and 'author_and_software_defined_assembly' are considered "biologically relevant assemblies.
          */
         details: Schema.Str;
         /**

package/lib/mol-io/reader/cif/schema/mmcif.js

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.354, IHM 1.17, MA 1.3.3.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.356, IHM 1.17, MA 1.3.5.
  *
  * @author molstar/ciftools package
  */
@@ -211,6 +211,28 @@ export var mmCIF_Schema = {
          * formal charge assignment normally found in chemical diagrams.
          */
         pdbx_formal_charge: int,
+        /**
+         * This data item is an ordinal which identifies distinct chemical components in the atom_site category, both
+         * polymeric and non-polymeric.
+         */
+        pdbx_label_index: int,
+        /**
+         * The name of additional external databases with residue level mapping.
+         */
+        pdbx_sifts_xref_db_name: str,
+        /**
+         * The accession code related to the additional external database entry.
+         */
+        pdbx_sifts_xref_db_acc: str,
+        /**
+         * The sequence position of the external database entry that corresponds
+         * to the residue mapping defined by the SIFTS process.
+         */
+        pdbx_sifts_xref_db_num: str,
+        /**
+         * Describes the residue type of the given UniProt match
+         */
+        pdbx_sifts_xref_db_res: str,
         /**
          * The model id corresponding to the atom site.
          * This data item is a pointer to _ihm_model_list.model_id
@@ -2207,6 +2229,10 @@ export var mmCIF_Schema = {
         oligomeric_count: int,
         /**
          * A description of special aspects of the macromolecular assembly.
+         *
+         * In the PDB, 'representative helical assembly', 'complete point assembly',
+         * 'complete icosahedral assembly', 'software_defined_assembly', 'author_defined_assembly',
+         * and 'author_and_software_defined_assembly' are considered "biologically relevant assemblies.
          */
         details: str,
         /**
@@ -5040,4 +5066,3 @@ export var mmCIF_Schema = {
     },
 };
 ;
-//# sourceMappingURL=mmcif.js.map

package/lib/mol-io/reader/cif/schema.js

@@ -202,4 +202,3 @@ function createTable(key, schema, frame, aliases) {
     }
     return new CategoryTable(cat || Data.CifCategory.empty(key), schema, !!cat);
 }
-//# sourceMappingURL=schema.js.map

package/lib/mol-io/reader/cif/text/parser.js

@@ -725,4 +725,3 @@ export function parseCifText(data) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/cif.js

@@ -29,4 +29,3 @@ export var CIF = {
     }
 };
 export * from './cif/data-model';
-//# sourceMappingURL=cif.js.map

package/lib/mol-io/reader/common/binary/column.js

@@ -4,4 +4,3 @@
  *
  * @author David Sehnal <david.sehnal@gmail.com>
  */ 
-//# sourceMappingURL=column.js.map

package/lib/mol-io/reader/common/text/column/fixed.js

@@ -44,4 +44,3 @@ export function FixedColumn(lines, offset, width, schema) {
         areValuesEqual: function (rowA, rowB) { return value(rowA) === value(rowB); }
     };
 }
-//# sourceMappingURL=fixed.js.map

package/lib/mol-io/reader/common/text/column/token.js

@@ -53,4 +53,3 @@ export function areTokensEmpty(tokens) {
     }
     return true;
 }
-//# sourceMappingURL=token.js.map

package/lib/mol-io/reader/common/text/number-parser.js

@@ -152,4 +152,3 @@ export function getNumberType(str) {
     }
     return start === end ? 0 /* Int */ : 3 /* NaN */;
 }
-//# sourceMappingURL=number-parser.js.map

package/lib/mol-io/reader/common/text/tokenizer.js

@@ -299,4 +299,3 @@ export var TokenBuilder;
     }
     TokenBuilder.create = create;
 })(TokenBuilder || (TokenBuilder = {}));
-//# sourceMappingURL=tokenizer.js.map

package/lib/mol-io/reader/csv/data-model.js

@@ -12,4 +12,3 @@ export function CsvFile(table) {
 export function CsvTable(rowCount, columnNames, columns) {
     return { rowCount: rowCount, columnNames: __spreadArray([], columnNames, true), getColumn: function (name) { return columns[name]; } };
 }
-//# sourceMappingURL=data-model.js.map

package/lib/mol-io/reader/csv/field.js

@@ -5,4 +5,3 @@
  */
 import { CifField } from '../cif/data-model';
 export var Field = CifField.ofTokens;
-//# sourceMappingURL=field.js.map

package/lib/mol-io/reader/csv/parser.js

@@ -252,4 +252,3 @@ export function parseCsv(data, opts) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/csv/schema.js

@@ -4,4 +4,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 export { toTable } from '../cif/schema';
-//# sourceMappingURL=schema.js.map

package/lib/mol-io/reader/cube/parser.js

@@ -107,4 +107,3 @@ export function parseCube(data, name) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/dcd/parser.js

@@ -162,4 +162,3 @@ export function parseDcd(data) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/dsn6/parser.js

@@ -177,4 +177,3 @@ export function parseFile(file, size) {
 export function parse(buffer, name) {
     return parseFile(FileHandle.fromBuffer(SimpleBuffer.fromUint8Array(buffer), name), buffer.length);
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/dsn6/schema.js

@@ -4,4 +4,3 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 export {};
-//# sourceMappingURL=schema.js.map

package/lib/mol-io/reader/dx/parser.js

@@ -122,4 +122,3 @@ export function parseDx(data, name) {
         return parseBinary(taskCtx, data, name);
     });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/gro/parser.js

@@ -166,4 +166,3 @@ export function parseGRO(data) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/mol/parser.js

@@ -192,4 +192,3 @@ export function parseMol(data) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map

package/lib/mol-io/reader/mol2/parser.js

@@ -315,4 +315,3 @@ export function parseMol2(data, name) {
         });
     }); });
 }
-//# sourceMappingURL=parser.js.map