molstar 3.0.0-dev.4 → 3.0.0-dev.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +187 -187
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -95
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.d.ts +2 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/index.js +87 -74
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +37 -215
- package/lib/apps/viewer/index.html +106 -95
- package/lib/apps/viewer/index.js +141 -52
- package/lib/cli/cifschema/index.d.ts +1 -1
- package/lib/cli/cifschema/index.js +15 -35
- package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
- package/lib/commonjs/apps/docking-viewer/index.js +86 -73
- package/lib/commonjs/apps/viewer/index.d.ts +37 -215
- package/lib/commonjs/apps/viewer/index.js +141 -52
- package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/index.js +15 -35
- package/lib/commonjs/examples/alpha-orbitals/index.js +3 -4
- package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +57 -41
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
- package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -9
- package/lib/commonjs/mol-canvas3d/canvas3d.js +38 -26
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
- package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +10 -2
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +18 -14
- package/lib/commonjs/mol-canvas3d/passes/pick.js +12 -12
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
- package/lib/commonjs/mol-geo/geometry/base.js +18 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +12 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +11 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -9
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
- package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
- package/lib/commonjs/mol-gl/render-object.js +10 -10
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +15 -14
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
- package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +39 -33
- package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/points.js +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
- package/lib/commonjs/mol-gl/renderable/schema.js +4 -10
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
- package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/text.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +11 -6
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
- package/lib/commonjs/mol-gl/renderer.js +23 -92
- package/lib/commonjs/mol-gl/scene.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +7 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
- package/lib/commonjs/mol-gl/shader-code.js +43 -14
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
- package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
- package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
- package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/model/model.js +8 -2
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
- package/lib/commonjs/mol-model/structure/model/types.js +9 -0
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -4
- package/lib/commonjs/mol-plugin/config.d.ts +1 -1
- package/lib/commonjs/mol-plugin/config.js +5 -25
- package/lib/commonjs/mol-plugin/features.d.ts +9 -0
- package/lib/commonjs/mol-plugin/features.js +38 -0
- package/lib/commonjs/mol-plugin/spec.js +1 -0
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
- package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
- package/lib/commonjs/mol-plugin-ui/index.js +13 -16
- package/lib/commonjs/mol-plugin-ui/plugin.js +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +61 -19
- package/lib/commonjs/mol-repr/structure/params.d.ts +81 -19
- package/lib/commonjs/mol-repr/structure/registry.d.ts +141 -19
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/units-representation.js +1 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +81 -19
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +1 -2
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
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- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
- package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
- package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/mol-repr/structure/visual/label-text.js +1 -2
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/util/bond.js +1 -1
- package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
- package/lib/mol-repr/structure/visual/util/common.js +2 -5
- package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
- package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
- package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
- package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
- package/lib/mol-repr/visual.js +11 -7
- package/lib/mol-repr/volume/direct-volume.d.ts +33 -57
- package/lib/mol-repr/volume/direct-volume.js +8 -12
- package/lib/mol-repr/volume/isosurface.d.ts +60 -0
- package/lib/mol-repr/volume/isosurface.js +11 -2
- package/lib/mol-repr/volume/registry.d.ts +31 -19
- package/lib/mol-repr/volume/representation.d.ts +10 -0
- package/lib/mol-repr/volume/slice.d.ts +30 -0
- package/lib/mol-repr/volume/slice.js +2 -2
- package/lib/mol-repr/volume/util.js +2 -2
- package/lib/mol-script/language/builder.d.ts +0 -1
- package/lib/mol-theme/clipping.d.ts +7 -15
- package/lib/mol-theme/clipping.js +5 -12
- package/lib/mol-theme/color/volume-value.d.ts +17 -0
- package/lib/mol-theme/color/volume-value.js +52 -0
- package/lib/mol-theme/color.d.ts +3 -0
- package/lib/mol-theme/color.js +2 -0
- package/lib/mol-util/clip.d.ts +49 -0
- package/lib/mol-util/clip.js +93 -0
- package/lib/mol-util/number-packing.d.ts +11 -0
- package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
- package/package.json +162 -162
- package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
- package/lib/mol-util/float-packing.d.ts +0 -15
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textarea.msp-form-control {
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|
-
margin-top: 1px;
|
|
278
|
-
}
|
|
279
|
-
|
|
280
|
-
.msp-btn-commit {
|
|
281
|
-
text-align: right;
|
|
282
|
-
padding-top: 0;
|
|
283
|
-
padding-bottom: 0;
|
|
284
|
-
padding-right: $control-spacing;
|
|
285
|
-
padding-left: 0;
|
|
286
|
-
line-height: $row-height;
|
|
287
|
-
border: none;
|
|
288
|
-
overflow: hidden;
|
|
289
|
-
font-weight: bold;
|
|
290
|
-
|
|
291
|
-
.msp-icon {
|
|
292
|
-
display: block-inline;
|
|
293
|
-
line-height: $row-height;
|
|
294
|
-
width: $row-height;
|
|
295
|
-
text-align: center;
|
|
296
|
-
}
|
|
297
|
-
}
|
|
298
|
-
|
|
299
|
-
select.msp-form-control {
|
|
300
|
-
background: none;
|
|
301
|
-
background-color: $msp-form-control-background;
|
|
302
|
-
background-size: 8px 12px;
|
|
303
|
-
background-image: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAUCAMAAACzvE1FAAAADFBMVEUzMzMzMzMzMzMzMzMKAG/3AAAAA3RSTlMAf4C/aSLHAAAAPElEQVR42q3NMQ4AIAgEQTn//2cLdRKppSGzBYwzVXvznNWs8C58CiussPJj8h6NwgorrKRdTvuV9v16Afn0AYFOB7aYAAAAAElFTkSuQmCC);
|
|
304
|
-
background-repeat: no-repeat;
|
|
305
|
-
background-position: right $control-spacing center;
|
|
306
|
-
padding-right: ($row-height - 8px);
|
|
307
|
-
}
|
|
308
|
-
|
|
309
|
-
select.msp-form-control:-moz-focusring {
|
|
310
|
-
color: transparent;
|
|
311
|
-
text-shadow: 0 0 0 $font-color;
|
|
312
|
-
}
|
|
313
|
-
|
|
314
|
-
.msp-default-bg {
|
|
315
|
-
background: $default-background;
|
|
316
|
-
}
|
|
317
|
-
|
|
318
|
-
.msp-transparent-bg {
|
|
319
|
-
background: transparent;
|
|
320
|
-
}
|
|
321
|
-
|
|
322
|
-
.msp-no-hover-outline {
|
|
323
|
-
&:hover {
|
|
324
|
-
color: $hover-font-color;
|
|
325
|
-
background-color: inherit;
|
|
326
|
-
border: none;
|
|
327
|
-
outline-offset: 0 !important;
|
|
328
|
-
outline: none !important;
|
|
329
|
-
}
|
|
330
|
-
}
|
|
331
|
-
|
|
332
|
-
.msp-icon-inline {
|
|
333
|
-
margin-right: 8px;
|
|
1
|
+
|
|
2
|
+
|
|
3
|
+
.msp-form-control {
|
|
4
|
+
display: block;
|
|
5
|
+
width: 100%;
|
|
6
|
+
background: $msp-form-control-background;
|
|
7
|
+
// color: $font-color;
|
|
8
|
+
border: none; // !important;
|
|
9
|
+
padding: 0 $control-spacing;
|
|
10
|
+
line-height: $row-height - 2px;
|
|
11
|
+
height: $row-height;
|
|
12
|
+
-webkit-appearance: none;
|
|
13
|
+
-moz-appearance: none;
|
|
14
|
+
appearance: none;
|
|
15
|
+
-webkit-box-shadow: none; // iOS <4.3 & Android <4.1
|
|
16
|
+
box-shadow: none;
|
|
17
|
+
// box-shadow: none !important;
|
|
18
|
+
background-image: none;
|
|
19
|
+
|
|
20
|
+
// Firefox
|
|
21
|
+
&::-moz-placeholder {
|
|
22
|
+
color: color-lower-contrast($font-color, 33%);
|
|
23
|
+
opacity: 1; // Override Firefox's unusual default opacity; see https://github.com/twbs/bootstrap/pull/11526
|
|
24
|
+
}
|
|
25
|
+
&:-ms-input-placeholder { color: color-lower-contrast($font-color, 33%); } // Internet Explorer 10+
|
|
26
|
+
&::-webkit-input-placeholder { color: color-lower-contrast($font-color, 33%); } // Safari and Chrome
|
|
27
|
+
|
|
28
|
+
&:hover {
|
|
29
|
+
color: $hover-font-color;
|
|
30
|
+
background-color: color-increase-contrast($msp-form-control-background, 5%);
|
|
31
|
+
border: none;
|
|
32
|
+
outline-offset: -1px !important;
|
|
33
|
+
outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
|
|
34
|
+
}
|
|
35
|
+
|
|
36
|
+
&:active, &:focus {
|
|
37
|
+
color: $font-color;
|
|
38
|
+
background-color: $msp-form-control-background;
|
|
39
|
+
border: none;
|
|
40
|
+
outline-offset: 0;
|
|
41
|
+
outline: none;
|
|
42
|
+
}
|
|
43
|
+
|
|
44
|
+
// Disabled and read-only inputs
|
|
45
|
+
//
|
|
46
|
+
// HTML5 says that controls under a fieldset > legend:first-child won't be
|
|
47
|
+
// disabled if the fieldset is disabled. Due to implementation difficulty, we
|
|
48
|
+
// don't honor that edge case; we style them as disabled anyway.
|
|
49
|
+
&[disabled],
|
|
50
|
+
&[readonly],
|
|
51
|
+
fieldset[disabled] & {
|
|
52
|
+
background: $default-background;
|
|
53
|
+
opacity: 0.35;
|
|
54
|
+
}
|
|
55
|
+
}
|
|
56
|
+
|
|
57
|
+
.msp-btn {
|
|
58
|
+
@extend .msp-form-control;
|
|
59
|
+
|
|
60
|
+
display: inline-block;
|
|
61
|
+
margin-bottom: 0; // For input.msp-btn
|
|
62
|
+
text-align: center;
|
|
63
|
+
touch-action: manipulation;
|
|
64
|
+
cursor: pointer;
|
|
65
|
+
background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214
|
|
66
|
+
white-space: nowrap;
|
|
67
|
+
@include user-select(none);
|
|
68
|
+
|
|
69
|
+
|
|
70
|
+
padding: 0 $control-spacing;
|
|
71
|
+
line-height: $row-height;
|
|
72
|
+
border: none;
|
|
73
|
+
-moz-box-sizing: border-box;
|
|
74
|
+
box-sizing: border-box;
|
|
75
|
+
|
|
76
|
+
&[disabled] {
|
|
77
|
+
background: $default-background;
|
|
78
|
+
opacity: 0.35;
|
|
79
|
+
}
|
|
80
|
+
}
|
|
81
|
+
|
|
82
|
+
.msp-btn-block {
|
|
83
|
+
display: block;
|
|
84
|
+
width: 100%;
|
|
85
|
+
}
|
|
86
|
+
|
|
87
|
+
.msp-btn, .msp-btn:active, .msp-btn-link:focus, .msp-btn:hover {
|
|
88
|
+
outline: none;
|
|
89
|
+
}
|
|
90
|
+
|
|
91
|
+
.msp-material-icon {
|
|
92
|
+
svg {
|
|
93
|
+
display: inline-flex;
|
|
94
|
+
vertical-align: middle;
|
|
95
|
+
font-size: 1.2em;
|
|
96
|
+
margin-bottom: 3px;
|
|
97
|
+
|
|
98
|
+
fill: currentColor;
|
|
99
|
+
width: 1em;
|
|
100
|
+
height: 1em;
|
|
101
|
+
flex-shrink: 0;
|
|
102
|
+
user-select: none;
|
|
103
|
+
}
|
|
104
|
+
}
|
|
105
|
+
|
|
106
|
+
.msp-btn-block {
|
|
107
|
+
> .msp-material-icon {
|
|
108
|
+
margin-left: 0;
|
|
109
|
+
margin-right: .4em;
|
|
110
|
+
}
|
|
111
|
+
}
|
|
112
|
+
|
|
113
|
+
.msp-btn-childless {
|
|
114
|
+
> .msp-material-icon {
|
|
115
|
+
margin-left: 0;
|
|
116
|
+
margin-right: 0;
|
|
117
|
+
}
|
|
118
|
+
}
|
|
119
|
+
|
|
120
|
+
.msp-btn-icon {
|
|
121
|
+
border: none;
|
|
122
|
+
height: $row-height;
|
|
123
|
+
width: $row-height;
|
|
124
|
+
line-height: $row-height;
|
|
125
|
+
padding: 0;
|
|
126
|
+
text-align: center;
|
|
127
|
+
|
|
128
|
+
&:hover {
|
|
129
|
+
color: $hover-font-color;
|
|
130
|
+
background-color: color-increase-contrast($msp-form-control-background, 5%);
|
|
131
|
+
border: none;
|
|
132
|
+
outline-offset: -1px !important;
|
|
133
|
+
outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
|
|
134
|
+
}
|
|
135
|
+
|
|
136
|
+
&[disabled], &[disabled]:hover, &[disabled]:active {
|
|
137
|
+
color: $msp-btn-link-toggle-off-font-color;
|
|
138
|
+
}
|
|
139
|
+
}
|
|
140
|
+
|
|
141
|
+
.msp-btn-icon-small {
|
|
142
|
+
border: none;
|
|
143
|
+
height: $row-height;
|
|
144
|
+
width: 20px;
|
|
145
|
+
// font-size: 85%;
|
|
146
|
+
line-height: $row-height;
|
|
147
|
+
padding: 0;
|
|
148
|
+
text-align: center;
|
|
149
|
+
|
|
150
|
+
&:hover {
|
|
151
|
+
color: $hover-font-color;
|
|
152
|
+
background-color: color-increase-contrast($msp-form-control-background, 5%);
|
|
153
|
+
border: none;
|
|
154
|
+
outline-offset: -1px !important;
|
|
155
|
+
outline: 1px solid color-increase-contrast($msp-form-control-background, 20%) !important;
|
|
156
|
+
}
|
|
157
|
+
|
|
158
|
+
&[disabled], &[disabled]:hover, &[disabled]:active {
|
|
159
|
+
color: $msp-btn-link-toggle-off-font-color;
|
|
160
|
+
}
|
|
161
|
+
}
|
|
162
|
+
|
|
163
|
+
.msp-btn-link {
|
|
164
|
+
font-weight: normal;
|
|
165
|
+
border-radius: 0;
|
|
166
|
+
|
|
167
|
+
&,
|
|
168
|
+
&:active,
|
|
169
|
+
&.active,
|
|
170
|
+
&[disabled],
|
|
171
|
+
fieldset[disabled] & {
|
|
172
|
+
background-color: transparent;
|
|
173
|
+
-webkit-box-shadow: none; // iOS <4.3 & Android <4.1
|
|
174
|
+
box-shadow: none;
|
|
175
|
+
}
|
|
176
|
+
&,
|
|
177
|
+
&:hover,
|
|
178
|
+
&:focus,
|
|
179
|
+
&:active {
|
|
180
|
+
border-color: transparent;
|
|
181
|
+
}
|
|
182
|
+
&:hover,
|
|
183
|
+
&:focus {
|
|
184
|
+
text-decoration: none;
|
|
185
|
+
background-color: transparent;
|
|
186
|
+
}
|
|
187
|
+
&[disabled],
|
|
188
|
+
fieldset[disabled] & {
|
|
189
|
+
&:hover,
|
|
190
|
+
&:focus {
|
|
191
|
+
text-decoration: none;
|
|
192
|
+
}
|
|
193
|
+
}
|
|
194
|
+
|
|
195
|
+
.msp-icon {
|
|
196
|
+
font-size: 100%;
|
|
197
|
+
}
|
|
198
|
+
}
|
|
199
|
+
|
|
200
|
+
.msp-btn-link, .msp-btn-link:active, .msp-btn-link:focus {
|
|
201
|
+
color: $msp-btn-link-font-color;
|
|
202
|
+
text-decoration: none;
|
|
203
|
+
}
|
|
204
|
+
|
|
205
|
+
.msp-btn-link:hover {
|
|
206
|
+
color: $hover-font-color;
|
|
207
|
+
text-decoration: none;
|
|
208
|
+
}
|
|
209
|
+
|
|
210
|
+
.msp-btn-link-toggle-on {
|
|
211
|
+
color: $msp-btn-link-toggle-on-font-color;
|
|
212
|
+
}
|
|
213
|
+
|
|
214
|
+
.msp-btn-link-toggle-off, .msp-btn-link-toggle-off:active, .msp-btn-link-toggle-off:focus {
|
|
215
|
+
color: $msp-btn-link-toggle-off-font-color !important;
|
|
216
|
+
}
|
|
217
|
+
|
|
218
|
+
.msp-btn-link-toggle-off:hover, .msp-btn-link-toggle-on:hover {
|
|
219
|
+
color: $hover-font-color !important;
|
|
220
|
+
}
|
|
221
|
+
|
|
222
|
+
@mixin msp-btn($name, $font, $bg) {
|
|
223
|
+
.msp-btn-#{$name}, .msp-btn-#{$name}:active, .msp-btn-#{$name}:focus {
|
|
224
|
+
color: $font;
|
|
225
|
+
background: $bg;
|
|
226
|
+
}
|
|
227
|
+
.msp-btn-#{$name}:hover {
|
|
228
|
+
color: $hover-font-color;
|
|
229
|
+
background: color-lower-contrast($bg, 2.5%);
|
|
230
|
+
}
|
|
231
|
+
|
|
232
|
+
.msp-btn-#{$name}[disabled], .msp-btn-#{$name}[disabled]:hover,
|
|
233
|
+
.msp-btn-#{$name}[disabled]:active, .msp-btn-#{$name}[disabled]:focus {
|
|
234
|
+
color: color-lower-contrast($font, 1%);
|
|
235
|
+
}
|
|
236
|
+
}
|
|
237
|
+
|
|
238
|
+
// @include msp-btn('remove', $msp-btn-remove-font-color, $msp-btn-remove-background);
|
|
239
|
+
@include msp-btn('action', $font-color, $msp-btn-action-background);
|
|
240
|
+
@include msp-btn('commit-on', $msp-btn-commit-on-font-color, $msp-btn-commit-on-background);
|
|
241
|
+
@include msp-btn('commit-off', $msp-btn-commit-off-font-color, $msp-btn-commit-off-background);
|
|
242
|
+
|
|
243
|
+
.msp-btn-remove:hover {
|
|
244
|
+
color: $msp-btn-remove-hover-font-color;
|
|
245
|
+
}
|
|
246
|
+
.msp-btn-commit-on:hover {
|
|
247
|
+
color: $msp-btn-commit-on-hover-font-color;
|
|
248
|
+
}
|
|
249
|
+
|
|
250
|
+
.msp-btn-action {
|
|
251
|
+
height: $row-height;
|
|
252
|
+
line-height: $row-height;
|
|
253
|
+
}
|
|
254
|
+
|
|
255
|
+
input[type="file"] {
|
|
256
|
+
display: block;
|
|
257
|
+
}
|
|
258
|
+
|
|
259
|
+
// Make range inputs behave like textual form controls
|
|
260
|
+
input[type="range"] {
|
|
261
|
+
display: block;
|
|
262
|
+
width: 100%;
|
|
263
|
+
}
|
|
264
|
+
|
|
265
|
+
// Make multiple select elements height not fixed
|
|
266
|
+
select[multiple],
|
|
267
|
+
select[size] {
|
|
268
|
+
height: auto;
|
|
269
|
+
}
|
|
270
|
+
|
|
271
|
+
// Reset height for `textarea`s
|
|
272
|
+
textarea.msp-form-control {
|
|
273
|
+
height: auto;
|
|
274
|
+
}
|
|
275
|
+
|
|
276
|
+
.msp-control-top-offset {
|
|
277
|
+
margin-top: 1px;
|
|
278
|
+
}
|
|
279
|
+
|
|
280
|
+
.msp-btn-commit {
|
|
281
|
+
text-align: right;
|
|
282
|
+
padding-top: 0;
|
|
283
|
+
padding-bottom: 0;
|
|
284
|
+
padding-right: $control-spacing;
|
|
285
|
+
padding-left: 0;
|
|
286
|
+
line-height: $row-height;
|
|
287
|
+
border: none;
|
|
288
|
+
overflow: hidden;
|
|
289
|
+
font-weight: bold;
|
|
290
|
+
|
|
291
|
+
.msp-icon {
|
|
292
|
+
display: block-inline;
|
|
293
|
+
line-height: $row-height;
|
|
294
|
+
width: $row-height;
|
|
295
|
+
text-align: center;
|
|
296
|
+
}
|
|
297
|
+
}
|
|
298
|
+
|
|
299
|
+
select.msp-form-control {
|
|
300
|
+
background: none;
|
|
301
|
+
background-color: $msp-form-control-background;
|
|
302
|
+
background-size: 8px 12px;
|
|
303
|
+
background-image: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAUCAMAAACzvE1FAAAADFBMVEUzMzMzMzMzMzMzMzMKAG/3AAAAA3RSTlMAf4C/aSLHAAAAPElEQVR42q3NMQ4AIAgEQTn//2cLdRKppSGzBYwzVXvznNWs8C58CiussPJj8h6NwgorrKRdTvuV9v16Afn0AYFOB7aYAAAAAElFTkSuQmCC);
|
|
304
|
+
background-repeat: no-repeat;
|
|
305
|
+
background-position: right $control-spacing center;
|
|
306
|
+
padding-right: ($row-height - 8px);
|
|
307
|
+
}
|
|
308
|
+
|
|
309
|
+
select.msp-form-control:-moz-focusring {
|
|
310
|
+
color: transparent;
|
|
311
|
+
text-shadow: 0 0 0 $font-color;
|
|
312
|
+
}
|
|
313
|
+
|
|
314
|
+
.msp-default-bg {
|
|
315
|
+
background: $default-background;
|
|
316
|
+
}
|
|
317
|
+
|
|
318
|
+
.msp-transparent-bg {
|
|
319
|
+
background: transparent;
|
|
320
|
+
}
|
|
321
|
+
|
|
322
|
+
.msp-no-hover-outline {
|
|
323
|
+
&:hover {
|
|
324
|
+
color: $hover-font-color;
|
|
325
|
+
background-color: inherit;
|
|
326
|
+
border: none;
|
|
327
|
+
outline-offset: 0 !important;
|
|
328
|
+
outline: none !important;
|
|
329
|
+
}
|
|
330
|
+
}
|
|
331
|
+
|
|
332
|
+
.msp-icon-inline {
|
|
333
|
+
margin-right: 8px;
|
|
334
334
|
}
|