molstar 3.0.0-dev.4 → 3.0.0-dev.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (658) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +187 -187
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -95
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.d.ts +2 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +87 -74
  9. package/lib/apps/viewer/embedded.html +43 -43
  10. package/lib/apps/viewer/index.d.ts +37 -215
  11. package/lib/apps/viewer/index.html +106 -95
  12. package/lib/apps/viewer/index.js +141 -52
  13. package/lib/cli/cifschema/index.d.ts +1 -1
  14. package/lib/cli/cifschema/index.js +15 -35
  15. package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
  16. package/lib/commonjs/apps/docking-viewer/index.js +86 -73
  17. package/lib/commonjs/apps/viewer/index.d.ts +37 -215
  18. package/lib/commonjs/apps/viewer/index.js +141 -52
  19. package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
  20. package/lib/commonjs/cli/cifschema/index.js +15 -35
  21. package/lib/commonjs/examples/alpha-orbitals/index.js +3 -4
  22. package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
  23. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  24. package/lib/commonjs/examples/lighting/index.js +57 -41
  25. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
  26. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
  27. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
  28. package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
  29. package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
  30. package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
  31. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
  32. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
  33. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  34. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
  35. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  36. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
  37. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  38. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
  39. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  40. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
  41. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
  42. package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
  43. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  44. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  46. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
  47. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
  48. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
  49. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -9
  50. package/lib/commonjs/mol-canvas3d/canvas3d.js +38 -26
  51. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
  52. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
  53. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  54. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
  55. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  56. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  57. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
  58. package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
  59. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  60. package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
  61. package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
  62. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +10 -2
  63. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +18 -14
  64. package/lib/commonjs/mol-canvas3d/passes/pick.js +12 -12
  65. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
  66. package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
  67. package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
  68. package/lib/commonjs/mol-geo/geometry/base.js +18 -1
  69. package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
  70. package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
  71. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
  72. package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
  73. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +12 -2
  74. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
  75. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
  76. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
  77. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
  78. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
  79. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
  80. package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
  81. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +11 -0
  82. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  83. package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
  84. package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -9
  85. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
  86. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
  87. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -1
  88. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  89. package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
  90. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
  91. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
  92. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
  93. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  94. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
  95. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  96. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
  97. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
  98. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
  99. package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
  100. package/lib/commonjs/mol-gl/render-object.js +10 -10
  101. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +11 -5
  102. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  103. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +15 -14
  104. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  105. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
  106. package/lib/commonjs/mol-gl/renderable/image.js +2 -2
  107. package/lib/commonjs/mol-gl/renderable/lines.d.ts +39 -33
  108. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  109. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +11 -5
  110. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  111. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
  112. package/lib/commonjs/mol-gl/renderable/points.js +2 -2
  113. package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
  114. package/lib/commonjs/mol-gl/renderable/schema.js +4 -10
  115. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +11 -5
  116. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  117. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
  118. package/lib/commonjs/mol-gl/renderable/text.js +2 -2
  119. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +11 -6
  120. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  121. package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
  122. package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
  123. package/lib/commonjs/mol-gl/renderer.js +23 -92
  124. package/lib/commonjs/mol-gl/scene.d.ts +2 -2
  125. package/lib/commonjs/mol-gl/scene.js +7 -5
  126. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  129. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  130. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
  131. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
  132. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  135. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  136. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
  137. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
  138. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
  140. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  141. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  142. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  143. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  144. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  145. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  146. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
  147. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
  148. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  149. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  150. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  151. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  152. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  153. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  154. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  155. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  156. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  157. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  158. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
  159. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
  160. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
  161. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
  162. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  163. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  164. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
  165. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
  166. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  167. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  168. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  169. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  170. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  171. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  172. package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
  173. package/lib/commonjs/mol-gl/shader-code.js +43 -14
  174. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
  175. package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
  176. package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
  177. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  178. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
  179. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
  180. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
  181. package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
  182. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
  183. package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
  184. package/lib/commonjs/mol-model/structure/model/model.js +8 -2
  185. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  186. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  187. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  188. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
  189. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  190. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  191. package/lib/commonjs/mol-model/structure/model/types.js +9 -0
  192. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
  193. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
  194. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
  195. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
  196. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
  197. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
  198. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
  199. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
  200. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
  201. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  202. package/lib/commonjs/mol-plugin/commands.d.ts +1 -4
  203. package/lib/commonjs/mol-plugin/config.d.ts +1 -1
  204. package/lib/commonjs/mol-plugin/config.js +5 -25
  205. package/lib/commonjs/mol-plugin/features.d.ts +9 -0
  206. package/lib/commonjs/mol-plugin/features.js +38 -0
  207. package/lib/commonjs/mol-plugin/spec.js +1 -0
  208. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
  209. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
  210. package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
  211. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  212. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
  213. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  214. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  215. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
  216. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
  217. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
  218. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
  219. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
  220. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
  221. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
  222. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  223. package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
  224. package/lib/commonjs/mol-plugin-ui/index.js +13 -16
  225. package/lib/commonjs/mol-plugin-ui/plugin.js +1 -1
  226. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
  227. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
  228. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
  229. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
  230. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
  231. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
  232. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
  233. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
  234. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
  235. package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
  236. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +61 -19
  237. package/lib/commonjs/mol-repr/structure/params.d.ts +81 -19
  238. package/lib/commonjs/mol-repr/structure/registry.d.ts +141 -19
  239. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
  240. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
  241. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
  242. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
  243. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
  244. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
  245. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
  246. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
  247. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
  248. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
  249. package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
  250. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
  251. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
  252. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
  253. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
  254. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +30 -0
  255. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +30 -0
  256. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +30 -0
  257. package/lib/commonjs/mol-repr/structure/units-representation.js +1 -1
  258. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +81 -19
  259. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
  260. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
  261. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
  262. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  263. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
  264. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  265. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
  266. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
  267. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
  268. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +10 -0
  269. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +10 -0
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  559. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  560. package/lib/mol-plugin-ui/viewport/simple-settings.js +2 -6
  561. package/lib/mol-repr/shape/loci/angle.d.ts +10 -0
  562. package/lib/mol-repr/shape/loci/common.d.ts +10 -0
  563. package/lib/mol-repr/shape/loci/dihedral.d.ts +10 -0
  564. package/lib/mol-repr/shape/loci/distance.d.ts +10 -0
  565. package/lib/mol-repr/shape/loci/label.d.ts +10 -0
  566. package/lib/mol-repr/shape/loci/orientation.d.ts +10 -0
  567. package/lib/mol-repr/shape/loci/plane.d.ts +10 -0
  568. package/lib/mol-repr/shape/model/unitcell.d.ts +10 -0
  569. package/lib/mol-repr/structure/complex-representation.js +1 -1
  570. package/lib/mol-repr/structure/complex-visual.d.ts +61 -19
  571. package/lib/mol-repr/structure/params.d.ts +81 -19
  572. package/lib/mol-repr/structure/registry.d.ts +141 -19
  573. package/lib/mol-repr/structure/representation/backbone.d.ts +30 -0
  574. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
  575. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
  576. package/lib/mol-repr/structure/representation/cartoon.d.ts +30 -0
  577. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
  578. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
  579. package/lib/mol-repr/structure/representation/gaussian-surface.js +1 -1
  580. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
  581. package/lib/mol-repr/structure/representation/gaussian-volume.js +2 -7
  582. package/lib/mol-repr/structure/representation/label.d.ts +30 -0
  583. package/lib/mol-repr/structure/representation/label.js +1 -1
  584. package/lib/mol-repr/structure/representation/line.d.ts +30 -0
  585. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
  586. package/lib/mol-repr/structure/representation/molecular-surface.js +1 -1
  587. package/lib/mol-repr/structure/representation/orientation.d.ts +30 -0
  588. package/lib/mol-repr/structure/representation/point.d.ts +30 -0
  589. package/lib/mol-repr/structure/representation/putty.d.ts +30 -0
  590. package/lib/mol-repr/structure/representation/spacefill.d.ts +30 -0
  591. package/lib/mol-repr/structure/units-representation.js +1 -1
  592. package/lib/mol-repr/structure/units-visual.d.ts +81 -19
  593. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
  594. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
  595. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
  596. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  597. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
  598. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  599. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
  600. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
  601. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
  602. package/lib/mol-repr/structure/visual/element-cross.d.ts +10 -0
  603. package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
  604. package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
  605. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
  606. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
  607. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
  608. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
  609. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
  610. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
  611. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
  612. package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
  613. package/lib/mol-repr/structure/visual/label-text.js +1 -2
  614. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
  615. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
  616. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
  617. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
  618. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
  619. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
  620. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
  621. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
  622. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
  623. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
  624. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
  625. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
  626. package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  627. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
  628. package/lib/mol-repr/structure/visual/util/bond.js +1 -1
  629. package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
  630. package/lib/mol-repr/structure/visual/util/common.js +2 -5
  631. package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
  632. package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
  633. package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
  634. package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
  635. package/lib/mol-repr/visual.js +11 -7
  636. package/lib/mol-repr/volume/direct-volume.d.ts +33 -57
  637. package/lib/mol-repr/volume/direct-volume.js +8 -12
  638. package/lib/mol-repr/volume/isosurface.d.ts +60 -0
  639. package/lib/mol-repr/volume/isosurface.js +11 -2
  640. package/lib/mol-repr/volume/registry.d.ts +31 -19
  641. package/lib/mol-repr/volume/representation.d.ts +10 -0
  642. package/lib/mol-repr/volume/slice.d.ts +30 -0
  643. package/lib/mol-repr/volume/slice.js +2 -2
  644. package/lib/mol-repr/volume/util.js +2 -2
  645. package/lib/mol-script/language/builder.d.ts +0 -1
  646. package/lib/mol-theme/clipping.d.ts +7 -15
  647. package/lib/mol-theme/clipping.js +5 -12
  648. package/lib/mol-theme/color/volume-value.d.ts +17 -0
  649. package/lib/mol-theme/color/volume-value.js +52 -0
  650. package/lib/mol-theme/color.d.ts +3 -0
  651. package/lib/mol-theme/color.js +2 -0
  652. package/lib/mol-util/clip.d.ts +49 -0
  653. package/lib/mol-util/clip.js +93 -0
  654. package/lib/mol-util/number-packing.d.ts +11 -0
  655. package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
  656. package/package.json +162 -162
  657. package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
  658. package/lib/mol-util/float-packing.d.ts +0 -15
@@ -38,6 +38,7 @@ var helper_1 = require("./helper/helper");
38
38
  var passes_1 = require("./passes/passes");
39
39
  var mol_util_1 = require("../mol-util");
40
40
  var marking_1 = require("./passes/marking");
41
+ var render_item_1 = require("../mol-gl/webgl/render-item");
41
42
  exports.Canvas3DParams = {
42
43
  camera: param_definition_1.ParamDefinition.Group({
43
44
  mode: param_definition_1.ParamDefinition.Select('perspective', param_definition_1.ParamDefinition.arrayToOptions(['perspective', 'orthographic']), { label: 'Camera' }),
@@ -202,7 +203,7 @@ var Canvas3D;
202
203
  var width = 128;
203
204
  var height = 128;
204
205
  updateViewport();
205
- var scene = scene_1.Scene.create(webgl);
206
+ var scene = scene_1.Scene.create(webgl, passes.draw.wboitEnabled ? render_item_1.GraphicsRenderVariantsWboit : render_item_1.GraphicsRenderVariantsBlended);
206
207
  var camera = new camera_1.Camera({
207
208
  position: linear_algebra_1.Vec3.create(0, 0, 100),
208
209
  mode: p.camera.mode,
@@ -254,16 +255,24 @@ var Canvas3D;
254
255
  changed = helper.camera.mark(loci, action) || changed;
255
256
  reprRenderObjects.forEach(function (_, _repr) { changed = _repr.mark(loci, action) || changed; });
256
257
  }
257
- if (changed && !noDraw) {
258
- scene.update(void 0, true);
259
- helper.handle.scene.update(void 0, true);
260
- helper.camera.scene.update(void 0, true);
261
- var prevPickDirty = pickHelper.dirty;
262
- draw(true);
263
- pickHelper.dirty = prevPickDirty; // marking does not change picking buffers
258
+ if (changed) {
259
+ if (noDraw) {
260
+ // Even with `noDraw` make sure changes will be rendered.
261
+ // Note that with this calling mark (with or without `noDraw`) multiple times
262
+ // during a JS event loop iteration will only result in a single render call.
263
+ forceNextRender = true;
264
+ }
265
+ else {
266
+ scene.update(void 0, true);
267
+ helper.handle.scene.update(void 0, true);
268
+ helper.camera.scene.update(void 0, true);
269
+ var prevPickDirty = pickHelper.dirty;
270
+ draw({ force: true, allowMulti: true });
271
+ pickHelper.dirty = prevPickDirty; // marking does not change picking buffers
272
+ }
264
273
  }
265
274
  }
266
- function render(force) {
275
+ function render(force, allowMulti) {
267
276
  if (webgl.isContextLost)
268
277
  return false;
269
278
  var resized = false;
@@ -287,11 +296,13 @@ var Canvas3D;
287
296
  stereoCamera.update();
288
297
  cam = stereoCamera;
289
298
  }
299
+ var ctx = { renderer: renderer, camera: cam, scene: scene, helper: helper };
290
300
  if (multi_sample_1.MultiSamplePass.isEnabled(p.multiSample)) {
291
- multiSampleHelper.render(renderer, cam, scene, helper, true, p.transparentBackground, p);
301
+ var forceOn = !cameraChanged && allowMulti && !controls.props.spin;
302
+ multiSampleHelper.render(ctx, p, true, forceOn);
292
303
  }
293
304
  else {
294
- passes.draw.render(renderer, cam, scene, helper, true, p.transparentBackground, p.postprocessing, p.marking);
305
+ passes.draw.render(ctx, p, true);
295
306
  }
296
307
  pickHelper.dirty = true;
297
308
  didRender = true;
@@ -302,15 +313,15 @@ var Canvas3D;
302
313
  var forceDrawAfterAllCommited = false;
303
314
  var currentTime = 0;
304
315
  var drawPaused = false;
305
- function draw(force) {
316
+ function draw(options) {
306
317
  if (drawPaused)
307
318
  return;
308
- if (render(!!force) && notifyDidDraw) {
319
+ if (render(!!(options === null || options === void 0 ? void 0 : options.force), !!(options === null || options === void 0 ? void 0 : options.allowMulti)) && notifyDidDraw) {
309
320
  didDraw.next((0, now_1.now)() - startTime);
310
321
  }
311
322
  }
312
- function requestDraw(force) {
313
- forceNextRender = forceNextRender || !!force;
323
+ function requestDraw() {
324
+ forceNextRender = true;
314
325
  }
315
326
  var animationFrameHandle = 0;
316
327
  function tick(t, options) {
@@ -320,8 +331,8 @@ var Canvas3D;
320
331
  if (options === null || options === void 0 ? void 0 : options.manualDraw) {
321
332
  return;
322
333
  }
323
- draw(false);
324
- if (!camera.transition.inTransition && !webgl.isContextLost) {
334
+ draw();
335
+ if (!camera.transition.inTransition && !controls.props.spin && !webgl.isContextLost) {
325
336
  interactionHelper.tick(currentTime);
326
337
  }
327
338
  }
@@ -358,7 +369,7 @@ var Canvas3D;
358
369
  if (forceDrawAfterAllCommited) {
359
370
  if (helper.debug.isEnabled)
360
371
  helper.debug.update();
361
- draw(true);
372
+ draw({ force: true });
362
373
  forceDrawAfterAllCommited = false;
363
374
  }
364
375
  commited.next((0, now_1.now)());
@@ -393,7 +404,7 @@ var Canvas3D;
393
404
  return true;
394
405
  if (camera.transition.inTransition || nextCameraResetSnapshot)
395
406
  return false;
396
- var cameraSphereOverlapsNone = true;
407
+ var cameraSphereOverlapsNone = true, isEmpty = true;
397
408
  geometry_1.Sphere3D.set(cameraSphere, camera.state.target, camera.state.radius);
398
409
  // check if any renderable has moved outside of the old bounding sphere
399
410
  // and if no renderable is overlapping with the camera sphere
@@ -404,13 +415,14 @@ var Canvas3D;
404
415
  var b = r.values.boundingSphere.ref.value;
405
416
  if (!b.radius)
406
417
  continue;
418
+ isEmpty = false;
407
419
  var cameraDist = linear_algebra_1.Vec3.distance(cameraSphere.center, b.center);
408
420
  if ((cameraDist > cameraSphere.radius || cameraDist > b.radius || b.radius > camera.state.radiusMax) && !geometry_1.Sphere3D.includes(oldBoundingSphereVisible, b))
409
421
  return true;
410
422
  if (geometry_1.Sphere3D.overlaps(cameraSphere, b))
411
423
  cameraSphereOverlapsNone = false;
412
424
  }
413
- return cameraSphereOverlapsNone;
425
+ return cameraSphereOverlapsNone || (!isEmpty && cameraSphere.radius <= 0.1);
414
426
  }
415
427
  var sceneCommitTimeoutMs = 250;
416
428
  function commitScene(isSynchronous) {
@@ -526,11 +538,11 @@ var Canvas3D;
526
538
  }
527
539
  var contextRestoredSub = contextRestored.subscribe(function () {
528
540
  pickHelper.dirty = true;
529
- draw(true);
541
+ draw({ force: true });
530
542
  // Unclear why, but in Chrome with wboit enabled the first `draw` only clears
531
543
  // the drawingBuffer. Note that in Firefox the drawingBuffer is preserved after
532
544
  // context loss so it is unclear if it behaves the same.
533
- draw(true);
545
+ draw({ force: true });
534
546
  });
535
547
  var resized = new rxjs_1.BehaviorSubject(0);
536
548
  function handleResize(draw) {
@@ -539,7 +551,7 @@ var Canvas3D;
539
551
  updateViewport();
540
552
  syncViewport();
541
553
  if (draw)
542
- requestDraw(true);
554
+ requestDraw();
543
555
  resized.next(+new Date());
544
556
  }
545
557
  return {
@@ -564,7 +576,7 @@ var Canvas3D;
564
576
  reprRenderObjects.clear();
565
577
  scene.clear();
566
578
  helper.debug.clear();
567
- requestDraw(true);
579
+ requestDraw();
568
580
  reprCount.next(reprRenderObjects.size);
569
581
  },
570
582
  syncVisibility: function () {
@@ -576,7 +588,7 @@ var Canvas3D;
576
588
  if (helper.debug.isEnabled)
577
589
  helper.debug.update();
578
590
  }
579
- requestDraw(true);
591
+ requestDraw();
580
592
  },
581
593
  requestDraw: requestDraw,
582
594
  tick: tick,
@@ -673,7 +685,7 @@ var Canvas3D;
673
685
  p.camera.stereo.name = 'off';
674
686
  }
675
687
  if (!doNotRequestDraw) {
676
- requestDraw(true);
688
+ requestDraw();
677
689
  }
678
690
  },
679
691
  getImagePass: function (props) {
@@ -18,6 +18,7 @@ var names_1 = require("../../mol-util/color/names");
18
18
  var sphere_2 = require("../../mol-geo/primitive/sphere");
19
19
  var mol_util_1 = require("../../mol-util");
20
20
  var geometry_2 = require("../../mol-geo/geometry/geometry");
21
+ var render_item_1 = require("../../mol-gl/webgl/render-item");
21
22
  exports.DebugHelperParams = {
22
23
  sceneBoundingSpheres: param_definition_1.ParamDefinition.Boolean(false, { description: 'Show full scene bounding spheres.' }),
23
24
  visibleSceneBoundingSpheres: param_definition_1.ParamDefinition.Boolean(false, { description: 'Show visible scene bounding spheres.' }),
@@ -28,7 +29,7 @@ var BoundingSphereHelper = /** @class */ (function () {
28
29
  function BoundingSphereHelper(ctx, parent, props) {
29
30
  this.objectsData = new Map();
30
31
  this.instancesData = new Map();
31
- this.scene = scene_1.Scene.create(ctx);
32
+ this.scene = scene_1.Scene.create(ctx, render_item_1.GraphicsRenderVariantsBlended);
32
33
  this.parent = parent;
33
34
  this._props = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, param_definition_1.ParamDefinition.getDefaultValues(exports.DebugHelperParams)), props);
34
35
  }
@@ -151,6 +152,6 @@ var objectMaterialId = (0, render_object_1.getNextMaterialId)();
151
152
  var instanceMaterialId = (0, render_object_1.getNextMaterialId)();
152
153
  function createBoundingSphereRenderObject(mesh, color, materialId, transform) {
153
154
  var values = mesh_1.Mesh.Utils.createValuesSimple(mesh, { alpha: 0.1, doubleSided: false }, color, 1, transform);
154
- return (0, render_object_1.createRenderObject)('mesh', values, { disposed: false, visible: true, alphaFactor: 1, pickable: false, colorOnly: false, opaque: false, writeDepth: false, noClip: false }, materialId);
155
+ return (0, render_object_1.createRenderObject)('mesh', values, { disposed: false, visible: true, alphaFactor: 1, pickable: false, colorOnly: false, opaque: false, writeDepth: false }, materialId);
155
156
  }
156
157
  //# sourceMappingURL=bounding-sphere-helper.js.map
@@ -30,6 +30,10 @@ export declare const CameraHelperParams: {
30
30
  roughness: number;
31
31
  bumpiness: number;
32
32
  }>;
33
+ clip: PD.Normalize<{
34
+ variant: any;
35
+ objects: any;
36
+ }>;
33
37
  }>, "on">>;
34
38
  };
35
39
  export declare type CameraHelperParams = typeof CameraHelperParams;
@@ -14,6 +14,7 @@ var sphere_1 = require("../../mol-geo/geometry/mesh/builder/sphere");
14
14
  var mesh_1 = require("../../mol-geo/geometry/mesh/mesh");
15
15
  var mesh_builder_1 = require("../../mol-geo/geometry/mesh/mesh-builder");
16
16
  var scene_1 = require("../../mol-gl/scene");
17
+ var render_item_1 = require("../../mol-gl/webgl/render-item");
17
18
  var geometry_1 = require("../../mol-math/geometry");
18
19
  var linear_algebra_1 = require("../../mol-math/linear-algebra");
19
20
  var loci_1 = require("../../mol-model/loci");
@@ -55,7 +56,7 @@ var CameraHelper = /** @class */ (function () {
55
56
  }
56
57
  return changed;
57
58
  };
58
- this.scene = scene_1.Scene.create(webgl);
59
+ this.scene = scene_1.Scene.create(webgl, render_item_1.GraphicsRenderVariantsBlended);
59
60
  this.camera = new camera_1.Camera();
60
61
  linear_algebra_1.Vec3.set(this.camera.up, 0, 1, 0);
61
62
  linear_algebra_1.Vec3.set(this.camera.target, 0, 0, 0);
@@ -70,7 +71,6 @@ var CameraHelper = /** @class */ (function () {
70
71
  _this.scene.clear();
71
72
  var params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props.axes.params), { scale: props.axes.params.scale * _this.webgl.pixelRatio });
72
73
  _this.renderObject = createAxesRenderObject(params);
73
- _this.renderObject.state.noClip = true;
74
74
  _this.scene.add(_this.renderObject);
75
75
  _this.scene.commit();
76
76
  linear_algebra_1.Vec3.set(_this.camera.position, 0, 0, params.scale * 200);
@@ -32,6 +32,10 @@ export declare const HandleHelperParams: {
32
32
  roughness: number;
33
33
  bumpiness: number;
34
34
  }>;
35
+ clip: PD.Normalize<{
36
+ variant: any;
37
+ objects: any;
38
+ }>;
35
39
  }>, "on">>;
36
40
  };
37
41
  export declare type HandleHelperParams = typeof HandleHelperParams;
@@ -23,6 +23,7 @@ var loci_1 = require("../../mol-model/loci");
23
23
  var marker_action_1 = require("../../mol-util/marker-action");
24
24
  var visual_1 = require("../../mol-repr/visual");
25
25
  var int_1 = require("../../mol-data/int");
26
+ var render_item_1 = require("../../mol-gl/webgl/render-item");
26
27
  var HandleParams = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params), { alpha: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.alpha), { defaultValue: 1 }), ignoreLight: (0, tslib_1.__assign)((0, tslib_1.__assign)({}, mesh_1.Mesh.Params.ignoreLight), { defaultValue: true }), colorX: param_definition_1.ParamDefinition.Color(names_1.ColorNames.red, { isEssential: true }), colorY: param_definition_1.ParamDefinition.Color(names_1.ColorNames.green, { isEssential: true }), colorZ: param_definition_1.ParamDefinition.Color(names_1.ColorNames.blue, { isEssential: true }), scale: param_definition_1.ParamDefinition.Numeric(0.33, { min: 0.1, max: 2, step: 0.1 }, { isEssential: true }) });
27
28
  exports.HandleHelperParams = {
28
29
  handle: param_definition_1.ParamDefinition.MappedStatic('off', {
@@ -55,7 +56,7 @@ var HandleHelper = /** @class */ (function () {
55
56
  }
56
57
  return changed;
57
58
  };
58
- this.scene = scene_1.Scene.create(webgl);
59
+ this.scene = scene_1.Scene.create(webgl, render_item_1.GraphicsRenderVariantsBlended);
59
60
  this.setProps(props);
60
61
  }
61
62
  HandleHelper.prototype.getBoundingSphere = function (out, instanceId) {
@@ -75,7 +76,6 @@ var HandleHelper = /** @class */ (function () {
75
76
  _this.scene.clear();
76
77
  var params = (0, tslib_1.__assign)((0, tslib_1.__assign)({}, props.handle.params), { scale: props.handle.params.scale * _this.webgl.pixelRatio });
77
78
  _this.renderObject = createHandleRenderObject(params);
78
- _this.renderObject.state.noClip = true;
79
79
  _this.scene.add(_this.renderObject);
80
80
  _this.scene.commit();
81
81
  p.handle.params = (0, tslib_1.__assign)({}, props.handle.params);
@@ -37,6 +37,7 @@ export declare const HelperParams: {
37
37
  bumpAmplitude: any;
38
38
  quality: any;
39
39
  material: any;
40
+ clip: any;
40
41
  }>, "on">;
41
42
  }>>;
42
43
  };
@@ -68,6 +69,7 @@ export declare const DefaultHelperProps: PD.Values<{
68
69
  bumpAmplitude: any;
69
70
  quality: any;
70
71
  material: any;
72
+ clip: any;
71
73
  }>, "on">;
72
74
  }>>;
73
75
  }>;
@@ -14,6 +14,17 @@ import { Helper } from '../helper/helper';
14
14
  import { StereoCamera } from '../camera/stereo';
15
15
  import { PostprocessingPass, PostprocessingProps } from './postprocessing';
16
16
  import { MarkingProps } from './marking';
17
+ declare type Props = {
18
+ postprocessing: PostprocessingProps;
19
+ marking: MarkingProps;
20
+ transparentBackground: boolean;
21
+ };
22
+ declare type RenderContext = {
23
+ renderer: Renderer;
24
+ camera: Camera | StereoCamera;
25
+ scene: Scene;
26
+ helper: Helper;
27
+ };
17
28
  export declare class DrawPass {
18
29
  private webgl;
19
30
  private readonly drawTarget;
@@ -40,6 +51,7 @@ export declare class DrawPass {
40
51
  private _renderWboit;
41
52
  private _renderBlended;
42
53
  private _render;
43
- render(renderer: Renderer, camera: Camera | StereoCamera, scene: Scene, helper: Helper, toDrawingBuffer: boolean, transparentBackground: boolean, postprocessingProps: PostprocessingProps, markingProps: MarkingProps): void;
54
+ render(ctx: RenderContext, props: Props, toDrawingBuffer: boolean): void;
44
55
  getColorTarget(postprocessingProps: PostprocessingProps): RenderTarget;
45
56
  }
57
+ export {};
@@ -197,23 +197,23 @@ var DrawPass = /** @class */ (function () {
197
197
  }
198
198
  renderer.renderBlendedTransparent(scene.primitives, camera, null);
199
199
  };
200
- DrawPass.prototype._render = function (renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps) {
200
+ DrawPass.prototype._render = function (renderer, camera, scene, helper, toDrawingBuffer, props) {
201
201
  var volumeRendering = scene.volumes.renderables.length > 0;
202
- var postprocessingEnabled = postprocessing_1.PostprocessingPass.isEnabled(postprocessingProps);
203
- var antialiasingEnabled = postprocessing_1.AntialiasingPass.isEnabled(postprocessingProps);
204
- var markingEnabled = marking_1.MarkingPass.isEnabled(markingProps);
202
+ var postprocessingEnabled = postprocessing_1.PostprocessingPass.isEnabled(props.postprocessing);
203
+ var antialiasingEnabled = postprocessing_1.AntialiasingPass.isEnabled(props.postprocessing);
204
+ var markingEnabled = marking_1.MarkingPass.isEnabled(props.marking);
205
205
  var _a = camera.viewport, x = _a.x, y = _a.y, width = _a.width, height = _a.height;
206
206
  renderer.setViewport(x, y, width, height);
207
207
  renderer.update(camera);
208
- if (transparentBackground && !antialiasingEnabled && toDrawingBuffer) {
208
+ if (props.transparentBackground && !antialiasingEnabled && toDrawingBuffer) {
209
209
  this.drawTarget.bind();
210
210
  renderer.clear(false);
211
211
  }
212
212
  if (this.wboitEnabled) {
213
- this._renderWboit(renderer, camera, scene, transparentBackground, postprocessingProps);
213
+ this._renderWboit(renderer, camera, scene, props.transparentBackground, props.postprocessing);
214
214
  }
215
215
  else {
216
- this._renderBlended(renderer, camera, scene, !volumeRendering && !postprocessingEnabled && !antialiasingEnabled && toDrawingBuffer, transparentBackground, postprocessingProps);
216
+ this._renderBlended(renderer, camera, scene, !volumeRendering && !postprocessingEnabled && !antialiasingEnabled && toDrawingBuffer, props.transparentBackground, props.postprocessing);
217
217
  }
218
218
  if (postprocessingEnabled) {
219
219
  this.postprocessing.target.bind();
@@ -225,7 +225,7 @@ var DrawPass = /** @class */ (function () {
225
225
  this.drawTarget.bind();
226
226
  }
227
227
  if (markingEnabled) {
228
- var markingDepthTest = markingProps.ghostEdgeStrength < 1;
228
+ var markingDepthTest = props.marking.ghostEdgeStrength < 1;
229
229
  if (markingDepthTest) {
230
230
  this.marking.depthTarget.bind();
231
231
  renderer.clear(false);
@@ -234,7 +234,7 @@ var DrawPass = /** @class */ (function () {
234
234
  this.marking.maskTarget.bind();
235
235
  renderer.clear(false);
236
236
  renderer.renderMarkingMask(scene.primitives, camera, markingDepthTest ? this.marking.depthTarget.texture : null);
237
- this.marking.update(markingProps);
237
+ this.marking.update(props.marking);
238
238
  this.marking.render(camera.viewport, postprocessingEnabled ? this.postprocessing.target : this.colorTarget);
239
239
  }
240
240
  if (helper.debug.isEnabled) {
@@ -250,7 +250,7 @@ var DrawPass = /** @class */ (function () {
250
250
  renderer.renderBlended(helper.camera.scene, helper.camera.camera, null);
251
251
  }
252
252
  if (antialiasingEnabled) {
253
- this.antialiasing.render(camera, toDrawingBuffer, postprocessingProps);
253
+ this.antialiasing.render(camera, toDrawingBuffer, props.postprocessing);
254
254
  }
255
255
  else if (toDrawingBuffer) {
256
256
  this.drawTarget.bind();
@@ -264,16 +264,17 @@ var DrawPass = /** @class */ (function () {
264
264
  }
265
265
  this.webgl.gl.flush();
266
266
  };
267
- DrawPass.prototype.render = function (renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps) {
268
- renderer.setTransparentBackground(transparentBackground);
267
+ DrawPass.prototype.render = function (ctx, props, toDrawingBuffer) {
268
+ var renderer = ctx.renderer, camera = ctx.camera, scene = ctx.scene, helper = ctx.helper;
269
+ renderer.setTransparentBackground(props.transparentBackground);
269
270
  renderer.setDrawingBufferSize(this.colorTarget.getWidth(), this.colorTarget.getHeight());
270
271
  renderer.setPixelRatio(this.webgl.pixelRatio);
271
272
  if (stereo_1.StereoCamera.is(camera)) {
272
- this._render(renderer, camera.left, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps);
273
- this._render(renderer, camera.right, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps);
273
+ this._render(renderer, camera.left, scene, helper, toDrawingBuffer, props);
274
+ this._render(renderer, camera.right, scene, helper, toDrawingBuffer, props);
274
275
  }
275
276
  else {
276
- this._render(renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, postprocessingProps, markingProps);
277
+ this._render(renderer, camera, scene, helper, toDrawingBuffer, props);
277
278
  }
278
279
  };
279
280
  DrawPass.prototype.getColorTarget = function (postprocessingProps) {
@@ -63,6 +63,7 @@ export declare const ImageParams: {
63
63
  bumpAmplitude: any;
64
64
  quality: any;
65
65
  material: any;
66
+ clip: any;
66
67
  }>, "on">;
67
68
  }>>;
68
69
  };
@@ -76,12 +76,13 @@ var ImagePass = /** @class */ (function () {
76
76
  camera_1.Camera.copySnapshot(this._camera.state, this.camera.state);
77
77
  util_1.Viewport.set(this._camera.viewport, 0, 0, this._width, this._height);
78
78
  this._camera.update();
79
+ var ctx = { renderer: this.renderer, camera: this._camera, scene: this.scene, helper: this.helper };
79
80
  if (multi_sample_1.MultiSamplePass.isEnabled(this.props.multiSample)) {
80
- this.multiSampleHelper.render(this.renderer, this._camera, this.scene, this.helper, false, this.props.transparentBackground, this.props);
81
+ this.multiSampleHelper.render(ctx, this.props, false);
81
82
  this._colorTarget = this.multiSamplePass.colorTarget;
82
83
  }
83
84
  else {
84
- this.drawPass.render(this.renderer, this._camera, this.scene, this.helper, false, this.props.transparentBackground, this.props.postprocessing, this.props.marking);
85
+ this.drawPass.render(ctx, this.props, false);
85
86
  this._colorTarget = this.drawPass.getColorTarget(this.props.postprocessing);
86
87
  }
87
88
  };
@@ -20,7 +20,7 @@ var overlay_frag_1 = require("../../mol-gl/shader/marking/overlay.frag");
20
20
  var color_1 = require("../../mol-util/color");
21
21
  var edge_frag_1 = require("../../mol-gl/shader/marking/edge.frag");
22
22
  exports.MarkingParams = {
23
- enabled: param_definition_1.ParamDefinition.Boolean(false),
23
+ enabled: param_definition_1.ParamDefinition.Boolean(true),
24
24
  highlightEdgeColor: param_definition_1.ParamDefinition.Color(color_1.Color.darken(color_1.Color.fromNormalizedRgb(1.0, 0.4, 0.6), 1.0)),
25
25
  selectEdgeColor: param_definition_1.ParamDefinition.Color(color_1.Color.darken(color_1.Color.fromNormalizedRgb(0.2, 1.0, 0.1), 1.0)),
26
26
  edgeScale: param_definition_1.ParamDefinition.Numeric(1, { min: 1, max: 3, step: 1 }, { description: 'Thickness of the edge.' }),
@@ -23,6 +23,13 @@ declare type Props = {
23
23
  multiSample: MultiSampleProps;
24
24
  postprocessing: PostprocessingProps;
25
25
  marking: MarkingProps;
26
+ transparentBackground: boolean;
27
+ };
28
+ declare type RenderContext = {
29
+ renderer: Renderer;
30
+ camera: Camera | StereoCamera;
31
+ scene: Scene;
32
+ helper: Helper;
26
33
  };
27
34
  export declare class MultiSamplePass {
28
35
  private webgl;
@@ -34,7 +41,7 @@ export declare class MultiSamplePass {
34
41
  private compose;
35
42
  constructor(webgl: WebGLContext, drawPass: DrawPass);
36
43
  syncSize(): void;
37
- render(sampleIndex: number, renderer: Renderer, camera: Camera | StereoCamera, scene: Scene, helper: Helper, toDrawingBuffer: boolean, transparentBackground: boolean, props: Props): number;
44
+ render(sampleIndex: number, ctx: RenderContext, props: Props, toDrawingBuffer: boolean, forceOn: boolean): number;
38
45
  private bindOutputTarget;
39
46
  private renderMultiSample;
40
47
  private renderTemporalMultiSample;
@@ -43,7 +50,8 @@ export declare class MultiSampleHelper {
43
50
  private multiSamplePass;
44
51
  private sampleIndex;
45
52
  update(changed: boolean, props: MultiSampleProps): boolean;
46
- render(renderer: Renderer, camera: Camera | StereoCamera, scene: Scene, helper: Helper, toDrawingBuffer: boolean, transparentBackground: boolean, props: Props): void;
53
+ /** Return `true` while more samples are needed */
54
+ render(ctx: RenderContext, props: Props, toDrawingBuffer: boolean, forceOn?: boolean): boolean;
47
55
  constructor(multiSamplePass: MultiSamplePass);
48
56
  }
49
57
  export {};
@@ -27,8 +27,8 @@ function getComposeRenderable(ctx, colorTexture) {
27
27
  return (0, renderable_1.createComputeRenderable)(renderItem, values);
28
28
  }
29
29
  exports.MultiSampleParams = {
30
- mode: param_definition_1.ParamDefinition.Select('off', [['off', 'Off'], ['on', 'On'], ['temporal', 'Temporal']]),
31
- sampleLevel: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 5, step: 1 }),
30
+ mode: param_definition_1.ParamDefinition.Select('temporal', [['off', 'Off'], ['on', 'On'], ['temporal', 'Temporal']]),
31
+ sampleLevel: param_definition_1.ParamDefinition.Numeric(2, { min: 0, max: 5, step: 1 }, { description: 'Take level^2 samples.' }),
32
32
  };
33
33
  var MultiSamplePass = /** @class */ (function () {
34
34
  function MultiSamplePass(webgl, drawPass) {
@@ -58,13 +58,13 @@ var MultiSamplePass = /** @class */ (function () {
58
58
  mol_util_1.ValueCell.update(this.compose.values.uTexSize, linear_algebra_1.Vec2.set(this.compose.values.uTexSize.ref.value, width, height));
59
59
  }
60
60
  };
61
- MultiSamplePass.prototype.render = function (sampleIndex, renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props) {
62
- if (props.multiSample.mode === 'temporal') {
63
- return this.renderTemporalMultiSample(sampleIndex, renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props);
61
+ MultiSamplePass.prototype.render = function (sampleIndex, ctx, props, toDrawingBuffer, forceOn) {
62
+ if (props.multiSample.mode === 'temporal' && !forceOn) {
63
+ return this.renderTemporalMultiSample(sampleIndex, ctx, props, toDrawingBuffer);
64
64
  }
65
65
  else {
66
- this.renderMultiSample(renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props);
67
- return sampleIndex;
66
+ this.renderMultiSample(ctx, toDrawingBuffer, props);
67
+ return -2;
68
68
  }
69
69
  };
70
70
  MultiSamplePass.prototype.bindOutputTarget = function (toDrawingBuffer) {
@@ -75,7 +75,8 @@ var MultiSamplePass = /** @class */ (function () {
75
75
  this.colorTarget.bind();
76
76
  }
77
77
  };
78
- MultiSamplePass.prototype.renderMultiSample = function (renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props) {
78
+ MultiSamplePass.prototype.renderMultiSample = function (ctx, toDrawingBuffer, props) {
79
+ var camera = ctx.camera;
79
80
  var _a = this, compose = _a.compose, composeTarget = _a.composeTarget, drawPass = _a.drawPass, webgl = _a.webgl;
80
81
  var gl = webgl.gl, state = webgl.state;
81
82
  // based on the Multisample Anti-Aliasing Render Pass
@@ -103,7 +104,7 @@ var MultiSamplePass = /** @class */ (function () {
103
104
  var sampleWeight = baseSampleWeight + roundingRange * uniformCenteredDistribution;
104
105
  mol_util_1.ValueCell.update(compose.values.uWeight, sampleWeight);
105
106
  // render scene
106
- drawPass.render(renderer, camera, scene, helper, false, transparentBackground, props.postprocessing, props.marking);
107
+ drawPass.render(ctx, props, false);
107
108
  // compose rendered scene with compose target
108
109
  composeTarget.bind();
109
110
  state.enable(gl.BLEND);
@@ -130,7 +131,8 @@ var MultiSamplePass = /** @class */ (function () {
130
131
  camera.viewOffset.enabled = false;
131
132
  camera.update();
132
133
  };
133
- MultiSamplePass.prototype.renderTemporalMultiSample = function (sampleIndex, renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props) {
134
+ MultiSamplePass.prototype.renderTemporalMultiSample = function (sampleIndex, ctx, props, toDrawingBuffer) {
135
+ var camera = ctx.camera;
134
136
  var _a = this, compose = _a.compose, composeTarget = _a.composeTarget, holdTarget = _a.holdTarget, drawPass = _a.drawPass, webgl = _a.webgl;
135
137
  var gl = webgl.gl, state = webgl.state;
136
138
  // based on the Multisample Anti-Aliasing Render Pass
@@ -144,7 +146,7 @@ var MultiSamplePass = /** @class */ (function () {
144
146
  var _b = camera.viewport, x = _b.x, y = _b.y, width = _b.width, height = _b.height;
145
147
  var sampleWeight = 1.0 / offsetList.length;
146
148
  if (sampleIndex === -1) {
147
- drawPass.render(renderer, camera, scene, helper, false, transparentBackground, props.postprocessing, props.marking);
149
+ drawPass.render(ctx, props, false);
148
150
  mol_util_1.ValueCell.update(compose.values.uWeight, 1.0);
149
151
  mol_util_1.ValueCell.update(compose.values.tColor, drawPass.getColorTarget(props.postprocessing).texture);
150
152
  compose.update();
@@ -170,7 +172,7 @@ var MultiSamplePass = /** @class */ (function () {
170
172
  camera_1.Camera.setViewOffset(camera.viewOffset, width, height, offset[0], offset[1], width, height);
171
173
  camera.update();
172
174
  // render scene
173
- drawPass.render(renderer, camera, scene, helper, false, transparentBackground, props.postprocessing, props.marking);
175
+ drawPass.render(ctx, props, false);
174
176
  // compose rendered scene with compose target
175
177
  composeTarget.bind();
176
178
  state.enable(gl.BLEND);
@@ -266,8 +268,10 @@ var MultiSampleHelper = /** @class */ (function () {
266
268
  this.sampleIndex = -1;
267
269
  return props.mode === 'temporal' ? this.sampleIndex !== -2 : false;
268
270
  };
269
- MultiSampleHelper.prototype.render = function (renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props) {
270
- this.sampleIndex = this.multiSamplePass.render(this.sampleIndex, renderer, camera, scene, helper, toDrawingBuffer, transparentBackground, props);
271
+ /** Return `true` while more samples are needed */
272
+ MultiSampleHelper.prototype.render = function (ctx, props, toDrawingBuffer, forceOn) {
273
+ this.sampleIndex = this.multiSamplePass.render(this.sampleIndex, ctx, props, toDrawingBuffer, !!forceOn);
274
+ return this.sampleIndex < 0;
271
275
  };
272
276
  return MultiSampleHelper;
273
277
  }());
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
8
8
  exports.PickHelper = exports.PickPass = void 0;
9
9
  var linear_algebra_1 = require("../../mol-math/linear-algebra");
10
10
  var misc_1 = require("../../mol-math/misc");
11
- var float_packing_1 = require("../../mol-util/float-packing");
11
+ var number_packing_1 = require("../../mol-util/number-packing");
12
12
  var stereo_1 = require("../camera/stereo");
13
13
  var util_1 = require("../camera/util");
14
14
  var util_2 = require("../camera/util");
@@ -46,29 +46,29 @@ var PickPass = /** @class */ (function () {
46
46
  this.depthPickTarget.setSize(this.pickWidth, this.pickHeight);
47
47
  }
48
48
  };
49
- PickPass.prototype.renderVariant = function (renderer, camera, scene, helper, variant) {
49
+ PickPass.prototype.renderVariant = function (renderer, camera, scene, helper, variant, pickType) {
50
50
  var depth = this.drawPass.depthTexturePrimitives;
51
51
  renderer.clear(false);
52
52
  renderer.update(camera);
53
- renderer.renderPick(scene.primitives, camera, variant, null);
54
- renderer.renderPick(scene.volumes, camera, variant, depth);
55
- renderer.renderPick(helper.handle.scene, camera, variant, null);
53
+ renderer.renderPick(scene.primitives, camera, variant, null, pickType);
54
+ renderer.renderPick(scene.volumes, camera, variant, depth, pickType);
55
+ renderer.renderPick(helper.handle.scene, camera, variant, null, pickType);
56
56
  if (helper.camera.isEnabled) {
57
57
  helper.camera.update(camera);
58
58
  renderer.update(helper.camera.camera);
59
- renderer.renderPick(helper.camera.scene, helper.camera.camera, variant, null);
59
+ renderer.renderPick(helper.camera.scene, helper.camera.camera, variant, null, pickType);
60
60
  }
61
61
  };
62
62
  PickPass.prototype.render = function (renderer, camera, scene, helper) {
63
63
  this.objectPickTarget.bind();
64
- this.renderVariant(renderer, camera, scene, helper, 'pickObject');
64
+ this.renderVariant(renderer, camera, scene, helper, 'pick', 1 /* Object */);
65
65
  this.instancePickTarget.bind();
66
- this.renderVariant(renderer, camera, scene, helper, 'pickInstance');
66
+ this.renderVariant(renderer, camera, scene, helper, 'pick', 2 /* Instance */);
67
67
  this.groupPickTarget.bind();
68
- this.renderVariant(renderer, camera, scene, helper, 'pickGroup');
68
+ this.renderVariant(renderer, camera, scene, helper, 'pick', 3 /* Group */);
69
69
  // printTexture(this.webgl, this.groupPickTarget.texture, { id: 'group' })
70
70
  this.depthPickTarget.bind();
71
- this.renderVariant(renderer, camera, scene, helper, 'depth');
71
+ this.renderVariant(renderer, camera, scene, helper, 'depth', 0 /* None */);
72
72
  };
73
73
  return PickPass;
74
74
  }());
@@ -127,11 +127,11 @@ var PickHelper = /** @class */ (function () {
127
127
  PickHelper.prototype.getDepth = function (x, y) {
128
128
  var idx = this.getBufferIdx(x, y);
129
129
  var b = this.depthBuffer;
130
- return (0, float_packing_1.unpackRGBAToDepth)(b[idx], b[idx + 1], b[idx + 2], b[idx + 3]);
130
+ return (0, number_packing_1.unpackRGBAToDepth)(b[idx], b[idx + 1], b[idx + 2], b[idx + 3]);
131
131
  };
132
132
  PickHelper.prototype.getId = function (x, y, buffer) {
133
133
  var idx = this.getBufferIdx(x, y);
134
- return (0, float_packing_1.decodeFloatRGB)(buffer[idx], buffer[idx + 1], buffer[idx + 2]);
134
+ return (0, number_packing_1.unpackRGBToInt)(buffer[idx], buffer[idx + 1], buffer[idx + 2]);
135
135
  };
136
136
  PickHelper.prototype.render = function (camera) {
137
137
  var _a = this, pickX = _a.pickX, pickY = _a.pickY, pickWidth = _a.pickWidth, pickHeight = _a.pickHeight, halfPickWidth = _a.halfPickWidth;