molstar 3.0.0-dev.4 → 3.0.0-dev.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +187 -187
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +106 -95
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.d.ts +2 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/index.js +87 -74
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.d.ts +37 -215
- package/lib/apps/viewer/index.html +106 -95
- package/lib/apps/viewer/index.js +141 -52
- package/lib/cli/cifschema/index.d.ts +1 -1
- package/lib/cli/cifschema/index.js +15 -35
- package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
- package/lib/commonjs/apps/docking-viewer/index.js +86 -73
- package/lib/commonjs/apps/viewer/index.d.ts +37 -215
- package/lib/commonjs/apps/viewer/index.js +141 -52
- package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
- package/lib/commonjs/cli/cifschema/index.js +15 -35
- package/lib/commonjs/examples/alpha-orbitals/index.js +3 -4
- package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +57 -41
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
- package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
- package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
- package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
- package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -9
- package/lib/commonjs/mol-canvas3d/canvas3d.js +38 -26
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
- package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
- package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +10 -2
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +18 -14
- package/lib/commonjs/mol-canvas3d/passes/pick.js +12 -12
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
- package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
- package/lib/commonjs/mol-geo/geometry/base.js +18 -1
- package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
- package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +12 -2
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +11 -0
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -9
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -1
- package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
- package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
- package/lib/commonjs/mol-gl/render-object.js +10 -10
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +15 -14
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
- package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +39 -33
- package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/points.js +2 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
- package/lib/commonjs/mol-gl/renderable/schema.js +4 -10
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +11 -5
- package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
- package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
- package/lib/commonjs/mol-gl/renderable/text.js +2 -2
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +11 -6
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
- package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
- package/lib/commonjs/mol-gl/renderer.js +23 -92
- package/lib/commonjs/mol-gl/scene.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +7 -5
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
- package/lib/commonjs/mol-gl/shader-code.js +43 -14
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
- package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
- package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
- package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
- package/lib/commonjs/mol-model/structure/model/model.js +8 -2
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
- package/lib/commonjs/mol-model/structure/model/types.js +9 -0
- package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
- package/lib/commonjs/mol-plugin/commands.d.ts +1 -4
- package/lib/commonjs/mol-plugin/config.d.ts +1 -1
- package/lib/commonjs/mol-plugin/config.js +5 -25
- package/lib/commonjs/mol-plugin/features.d.ts +9 -0
- package/lib/commonjs/mol-plugin/features.js +38 -0
- package/lib/commonjs/mol-plugin/spec.js +1 -0
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
- package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
- package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
- package/lib/commonjs/mol-plugin-ui/index.js +13 -16
- package/lib/commonjs/mol-plugin-ui/plugin.js +1 -1
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +61 -19
- package/lib/commonjs/mol-repr/structure/params.d.ts +81 -19
- package/lib/commonjs/mol-repr/structure/registry.d.ts +141 -19
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +30 -0
- package/lib/commonjs/mol-repr/structure/units-representation.js +1 -1
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +81 -19
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/label-text.js +1 -2
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
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- package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-cross.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
- package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
- package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
- package/lib/mol-repr/structure/visual/label-text.js +1 -2
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
- package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
- package/lib/mol-repr/structure/visual/util/bond.js +1 -1
- package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
- package/lib/mol-repr/structure/visual/util/common.js +2 -5
- package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
- package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
- package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
- package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
- package/lib/mol-repr/visual.js +11 -7
- package/lib/mol-repr/volume/direct-volume.d.ts +33 -57
- package/lib/mol-repr/volume/direct-volume.js +8 -12
- package/lib/mol-repr/volume/isosurface.d.ts +60 -0
- package/lib/mol-repr/volume/isosurface.js +11 -2
- package/lib/mol-repr/volume/registry.d.ts +31 -19
- package/lib/mol-repr/volume/representation.d.ts +10 -0
- package/lib/mol-repr/volume/slice.d.ts +30 -0
- package/lib/mol-repr/volume/slice.js +2 -2
- package/lib/mol-repr/volume/util.js +2 -2
- package/lib/mol-script/language/builder.d.ts +0 -1
- package/lib/mol-theme/clipping.d.ts +7 -15
- package/lib/mol-theme/clipping.js +5 -12
- package/lib/mol-theme/color/volume-value.d.ts +17 -0
- package/lib/mol-theme/color/volume-value.js +52 -0
- package/lib/mol-theme/color.d.ts +3 -0
- package/lib/mol-theme/color.js +2 -0
- package/lib/mol-util/clip.d.ts +49 -0
- package/lib/mol-util/clip.js +93 -0
- package/lib/mol-util/number-packing.d.ts +11 -0
- package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
- package/package.json +162 -162
- package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
- package/lib/mol-util/float-packing.d.ts +0 -15
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@@ -40,6 +40,16 @@ export declare const DihedralParams: {
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clip: PD.Group<PD.Normalize<{
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ignoreLight: PD.BooleanParam;
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sectorOpacity: PD.Numeric;
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color: PD.Color;
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export declare type LabelParams = typeof LabelParams;
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export declare type LabelProps = PD.Values<LabelParams>;
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export declare type OrientationProps = PD.Values<OrientationParams>;
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// Remap `loci` from equivalent structure to the current `_structure`
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export interface ComplexLinesVisualBuilder<P extends ComplexLinesParams> extends ComplexVisualBuilder<P, Lines> {
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export declare const ComplexDirectVolumeParams: {
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};
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}>, "volume"> | PD.NamedParams<PD.Normalize<{
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}> | Readonly<{
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}>, "isosurface">>;
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@@ -167,6 +189,16 @@ export declare const ComplexDirectVolumeParams: {
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export declare type ComplexDirectVolumeParams = typeof ComplexDirectVolumeParams;
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export interface ComplexDirectVolumeVisualBuilder<P extends ComplexDirectVolumeParams> extends ComplexVisualBuilder<P, DirectVolume> {
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@@ -189,6 +221,16 @@ export declare const ComplexTextureMeshParams: {
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export declare type ComplexTextureMeshParams = typeof ComplexTextureMeshParams;
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export interface ComplexTextureMeshVisualBuilder<P extends ComplexTextureMeshParams> extends ComplexVisualBuilder<P, TextureMesh> {
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@@ -27,6 +27,16 @@ export declare const StructureMeshParams: {
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}>[];
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}>>;
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|
};
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|
export declare type StructureMeshParams = typeof StructureMeshParams;
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|
export declare const StructureSpheresParams: {
|
|
@@ -43,6 +53,16 @@ export declare const StructureSpheresParams: {
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roughness: number;
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bumpiness: number;
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}>>;
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clip: PD.Group<PD.Normalize<{
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variant: import("../../mol-util/clip").Clip.Variant;
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objects: PD.Normalize<{
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}>>;
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aspectRatio: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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|
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}>>;
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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}, "backbone">;
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|
@@ -98,6 +118,16 @@ export declare namespace StructureRepresentationRegistry {
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clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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}>>;
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flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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traceOnly: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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|
@@ -133,6 +163,16 @@ export declare namespace StructureRepresentationRegistry {
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}>>;
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linkSizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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|
@@ -173,6 +213,16 @@ export declare namespace StructureRepresentationRegistry {
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|
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|
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|
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}>>;
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detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
@@ -196,6 +246,16 @@ export declare namespace StructureRepresentationRegistry {
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|
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|
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|
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|
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}>>;
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|
tryUseGpu: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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|
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|
resolutionFactor: number;
|
|
@@ -217,27 +277,9 @@ export declare namespace StructureRepresentationRegistry {
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radiusOffset: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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smoothness: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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unitKinds: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
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|
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doubleSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
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|
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flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
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|
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flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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|
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ignoreLight: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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|
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xrayShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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|
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|
|
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|
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controlPoints: import("../../mol-math/linear-algebra/3d/vec2").Vec2[];
|
|
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|
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list: {
|
|
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|
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kind: "set" | "interpolate";
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|
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colors: import("../../mol-util/color/color").ColorListEntry[];
|
|
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|
-
};
|
|
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|
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}>, "volume"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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|
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|
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isoValue: Readonly<{
|
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|
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kind: "absolute";
|
|
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|
-
absoluteValue: number;
|
|
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|
-
}> | Readonly<{
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|
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|
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kind: "relative";
|
|
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|
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relativeValue: number;
|
|
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|
-
}>;
|
|
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|
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singleLayer: boolean;
|
|
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|
-
}>, "isosurface">>;
|
|
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|
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controlPoints: import("../../mol-util/param-definition").ParamDefinition.LineGraph;
|
|
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|
stepsPerCell: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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|
jumpLength: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
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|
alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
@@ -247,6 +289,16 @@ export declare namespace StructureRepresentationRegistry {
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|
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|
roughness: number;
|
|
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|
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|
|
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|
}>>;
|
|
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|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
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|
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variant: import("../../mol-util/clip").Clip.Variant;
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|
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objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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|
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|
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|
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|
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|
+
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|
|
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|
+
}>[];
|
|
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|
+
}>>;
|
|
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|
}, "gaussian-volume">;
|
|
251
303
|
label: import("./representation").StructureRepresentationProvider<{
|
|
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304
|
visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"label-text">;
|
|
@@ -282,6 +334,16 @@ export declare namespace StructureRepresentationRegistry {
|
|
|
282
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|
roughness: number;
|
|
283
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|
bumpiness: number;
|
|
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|
}>>;
|
|
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|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
338
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
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|
+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
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|
+
type: any;
|
|
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|
+
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|
|
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|
+
position: any;
|
|
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|
+
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|
|
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|
+
scale: any;
|
|
345
|
+
}>[];
|
|
346
|
+
}>>;
|
|
285
347
|
}, "label">;
|
|
286
348
|
line: import("./representation").StructureRepresentationProvider<{
|
|
287
349
|
multipleBonds: import("../../mol-util/param-definition").ParamDefinition.Select<"offset" | "off" | "symmetric">;
|
|
@@ -301,6 +363,16 @@ export declare namespace StructureRepresentationRegistry {
|
|
|
301
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|
roughness: number;
|
|
302
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|
bumpiness: number;
|
|
303
365
|
}>>;
|
|
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|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
367
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
368
|
+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
369
|
+
type: any;
|
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invert: any;
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position: any;
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rotation: any;
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scale: any;
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}>[];
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}>>;
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pointSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
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pointStyle: import("../../mol-util/param-definition").ParamDefinition.Select<"circle" | "square" | "fuzzy">;
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includeTypes: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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@@ -330,6 +402,16 @@ export declare namespace StructureRepresentationRegistry {
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roughness: number;
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bumpiness: number;
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}>>;
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+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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406
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+
variant: import("../../mol-util/clip").Clip.Variant;
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+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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+
type: any;
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+
invert: any;
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+
position: any;
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+
rotation: any;
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+
scale: any;
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+
}>[];
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+
}>>;
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333
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smoothColors: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "auto"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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resolutionFactor: number;
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sampleStride: number;
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@@ -361,6 +443,16 @@ export declare namespace StructureRepresentationRegistry {
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roughness: number;
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362
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bumpiness: number;
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363
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}>>;
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|
446
|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
447
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
448
|
+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
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449
|
+
type: any;
|
|
450
|
+
invert: any;
|
|
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|
+
position: any;
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|
452
|
+
rotation: any;
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|
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|
+
scale: any;
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|
+
}>[];
|
|
455
|
+
}>>;
|
|
364
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|
}, "orientation">;
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|
365
457
|
point: import("./representation").StructureRepresentationProvider<{
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|
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|
pointSizeAttenuation: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
@@ -377,6 +469,16 @@ export declare namespace StructureRepresentationRegistry {
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377
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|
roughness: number;
|
|
378
470
|
bumpiness: number;
|
|
379
471
|
}>>;
|
|
472
|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
473
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
474
|
+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
475
|
+
type: any;
|
|
476
|
+
invert: any;
|
|
477
|
+
position: any;
|
|
478
|
+
rotation: any;
|
|
479
|
+
scale: any;
|
|
480
|
+
}>[];
|
|
481
|
+
}>>;
|
|
380
482
|
}, "point">;
|
|
381
483
|
putty: import("./representation").StructureRepresentationProvider<{
|
|
382
484
|
sizeFactor: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
@@ -398,6 +500,16 @@ export declare namespace StructureRepresentationRegistry {
|
|
|
398
500
|
roughness: number;
|
|
399
501
|
bumpiness: number;
|
|
400
502
|
}>>;
|
|
503
|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
504
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
505
|
+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
506
|
+
type: any;
|
|
507
|
+
invert: any;
|
|
508
|
+
position: any;
|
|
509
|
+
rotation: any;
|
|
510
|
+
scale: any;
|
|
511
|
+
}>[];
|
|
512
|
+
}>>;
|
|
401
513
|
detail: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
402
514
|
linearSegments: import("../../mol-util/param-definition").ParamDefinition.Numeric;
|
|
403
515
|
}, "putty">;
|
|
@@ -421,6 +533,16 @@ export declare namespace StructureRepresentationRegistry {
|
|
|
421
533
|
roughness: number;
|
|
422
534
|
bumpiness: number;
|
|
423
535
|
}>>;
|
|
536
|
+
clip: import("../../mol-util/param-definition").ParamDefinition.Group<import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
537
|
+
variant: import("../../mol-util/clip").Clip.Variant;
|
|
538
|
+
objects: import("../../mol-util/param-definition").ParamDefinition.Normalize<{
|
|
539
|
+
type: any;
|
|
540
|
+
invert: any;
|
|
541
|
+
position: any;
|
|
542
|
+
rotation: any;
|
|
543
|
+
scale: any;
|
|
544
|
+
}>[];
|
|
545
|
+
}>>;
|
|
424
546
|
flipSided: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
425
547
|
flatShaded: import("../../mol-util/param-definition").ParamDefinition.BooleanParam;
|
|
426
548
|
}, "spacefill">;
|