molstar 3.0.0-dev.4 → 3.0.0-dev.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (658) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +187 -187
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +106 -95
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.d.ts +2 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +87 -74
  9. package/lib/apps/viewer/embedded.html +43 -43
  10. package/lib/apps/viewer/index.d.ts +37 -215
  11. package/lib/apps/viewer/index.html +106 -95
  12. package/lib/apps/viewer/index.js +141 -52
  13. package/lib/cli/cifschema/index.d.ts +1 -1
  14. package/lib/cli/cifschema/index.js +15 -35
  15. package/lib/commonjs/apps/docking-viewer/index.d.ts +2 -1
  16. package/lib/commonjs/apps/docking-viewer/index.js +86 -73
  17. package/lib/commonjs/apps/viewer/index.d.ts +37 -215
  18. package/lib/commonjs/apps/viewer/index.js +141 -52
  19. package/lib/commonjs/cli/cifschema/index.d.ts +1 -1
  20. package/lib/commonjs/cli/cifschema/index.js +15 -35
  21. package/lib/commonjs/examples/alpha-orbitals/index.js +3 -4
  22. package/lib/commonjs/examples/basic-wrapper/index.js +23 -11
  23. package/lib/commonjs/examples/lighting/index.d.ts +1 -1
  24. package/lib/commonjs/examples/lighting/index.js +57 -41
  25. package/lib/commonjs/examples/proteopedia-wrapper/index.js +26 -14
  26. package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +0 -1
  27. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +1 -14
  28. package/lib/commonjs/extensions/anvil/behavior.d.ts +4 -0
  29. package/lib/commonjs/extensions/anvil/representation.d.ts +50 -0
  30. package/lib/commonjs/extensions/cellpack/representation.d.ts +10 -0
  31. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
  32. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +4 -4
  33. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  34. package/lib/commonjs/extensions/model-archive/quality-assessment/behavior.js +236 -0
  35. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  36. package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +125 -0
  37. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  38. package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +111 -0
  39. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  40. package/lib/commonjs/extensions/model-archive/quality-assessment/prop.js +130 -0
  41. package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -0
  42. package/lib/commonjs/extensions/mp4-export/controls.js +9 -7
  43. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  44. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
  45. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  46. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
  47. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +1 -1
  48. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +50 -0
  49. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +3 -9
  50. package/lib/commonjs/mol-canvas3d/canvas3d.js +38 -26
  51. package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
  52. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +4 -0
  53. package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
  54. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +4 -0
  55. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
  56. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  57. package/lib/commonjs/mol-canvas3d/passes/draw.d.ts +13 -1
  58. package/lib/commonjs/mol-canvas3d/passes/draw.js +16 -15
  59. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +1 -0
  60. package/lib/commonjs/mol-canvas3d/passes/image.js +3 -2
  61. package/lib/commonjs/mol-canvas3d/passes/marking.js +1 -1
  62. package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +10 -2
  63. package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +18 -14
  64. package/lib/commonjs/mol-canvas3d/passes/pick.js +12 -12
  65. package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +3 -3
  66. package/lib/commonjs/mol-canvas3d/passes/smaa.js +1 -1
  67. package/lib/commonjs/mol-geo/geometry/base.d.ts +18 -0
  68. package/lib/commonjs/mol-geo/geometry/base.js +18 -1
  69. package/lib/commonjs/mol-geo/geometry/clipping-data.d.ts +1 -3
  70. package/lib/commonjs/mol-geo/geometry/clipping-data.js +3 -8
  71. package/lib/commonjs/mol-geo/geometry/color-data.d.ts +1 -1
  72. package/lib/commonjs/mol-geo/geometry/color-data.js +22 -0
  73. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +12 -2
  74. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +2 -2
  75. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
  76. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +21 -66
  77. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
  78. package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
  79. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +10 -0
  80. package/lib/commonjs/mol-geo/geometry/image/image.js +1 -1
  81. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +11 -0
  82. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  83. package/lib/commonjs/mol-geo/geometry/marker-data.d.ts +0 -1
  84. package/lib/commonjs/mol-geo/geometry/marker-data.js +13 -9
  85. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +10 -0
  86. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +2 -2
  87. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +11 -1
  88. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  89. package/lib/commonjs/mol-geo/geometry/size-data.js +5 -5
  90. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +10 -0
  91. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +2 -2
  92. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +10 -0
  93. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  94. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
  95. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  96. package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +2 -2
  97. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
  98. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +10 -9
  99. package/lib/commonjs/mol-gl/render-object.d.ts +2 -1
  100. package/lib/commonjs/mol-gl/render-object.js +10 -10
  101. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +11 -5
  102. package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -3
  103. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +15 -14
  104. package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -3
  105. package/lib/commonjs/mol-gl/renderable/image.d.ts +10 -4
  106. package/lib/commonjs/mol-gl/renderable/image.js +2 -2
  107. package/lib/commonjs/mol-gl/renderable/lines.d.ts +39 -33
  108. package/lib/commonjs/mol-gl/renderable/lines.js +3 -3
  109. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +11 -5
  110. package/lib/commonjs/mol-gl/renderable/mesh.js +3 -3
  111. package/lib/commonjs/mol-gl/renderable/points.d.ts +10 -4
  112. package/lib/commonjs/mol-gl/renderable/points.js +2 -2
  113. package/lib/commonjs/mol-gl/renderable/schema.d.ts +10 -11
  114. package/lib/commonjs/mol-gl/renderable/schema.js +4 -10
  115. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +11 -5
  116. package/lib/commonjs/mol-gl/renderable/spheres.js +3 -3
  117. package/lib/commonjs/mol-gl/renderable/text.d.ts +10 -4
  118. package/lib/commonjs/mol-gl/renderable/text.js +2 -2
  119. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +11 -6
  120. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +3 -3
  121. package/lib/commonjs/mol-gl/renderable.d.ts +0 -1
  122. package/lib/commonjs/mol-gl/renderer.d.ts +12 -12
  123. package/lib/commonjs/mol-gl/renderer.js +23 -92
  124. package/lib/commonjs/mol-gl/scene.d.ts +2 -2
  125. package/lib/commonjs/mol-gl/scene.js +7 -5
  126. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  128. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  129. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  130. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
  131. package/lib/commonjs/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
  132. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
  133. package/lib/commonjs/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
  134. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  135. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  136. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
  137. package/lib/commonjs/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
  138. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
  139. package/lib/commonjs/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
  140. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  141. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  142. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  143. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  144. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  145. package/lib/commonjs/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  146. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
  147. package/lib/commonjs/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
  148. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  149. package/lib/commonjs/mol-gl/shader/chunks/common.glsl.js +1 -1
  150. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  151. package/lib/commonjs/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  152. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  153. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  154. package/lib/commonjs/mol-gl/shader/cylinders.frag.d.ts +1 -1
  155. package/lib/commonjs/mol-gl/shader/cylinders.frag.js +1 -1
  156. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  157. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  158. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
  159. package/lib/commonjs/mol-gl/shader/gaussian-density.frag.js +1 -1
  160. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
  161. package/lib/commonjs/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
  162. package/lib/commonjs/mol-gl/shader/image.frag.d.ts +1 -1
  163. package/lib/commonjs/mol-gl/shader/image.frag.js +1 -1
  164. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
  165. package/lib/commonjs/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
  166. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  167. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  168. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  169. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  170. package/lib/commonjs/mol-gl/shader/spheres.frag.d.ts +1 -1
  171. package/lib/commonjs/mol-gl/shader/spheres.frag.js +1 -1
  172. package/lib/commonjs/mol-gl/shader-code.d.ts +3 -1
  173. package/lib/commonjs/mol-gl/shader-code.js +43 -14
  174. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +7 -6
  175. package/lib/commonjs/mol-gl/webgl/render-item.js +10 -8
  176. package/lib/commonjs/mol-gl/webgl/resources.js +8 -1
  177. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  178. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +326 -1
  179. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +2 -2
  180. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +3 -2
  181. package/lib/commonjs/mol-math/linear-algebra/3d/quat.d.ts +9 -1
  182. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +20 -1
  183. package/lib/commonjs/mol-model/structure/model/model.d.ts +1 -0
  184. package/lib/commonjs/mol-model/structure/model/model.js +8 -2
  185. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  186. package/lib/commonjs/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  187. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  188. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-derived.js +4 -1
  189. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  190. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  191. package/lib/commonjs/mol-model/structure/model/types.js +9 -0
  192. package/lib/commonjs/mol-model/structure/structure/unit/rings.js +2 -0
  193. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +20 -0
  194. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
  195. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
  196. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +30 -0
  197. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
  198. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js +4 -6
  199. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
  200. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
  201. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  202. package/lib/commonjs/mol-plugin/commands.d.ts +1 -4
  203. package/lib/commonjs/mol-plugin/config.d.ts +1 -1
  204. package/lib/commonjs/mol-plugin/config.js +5 -25
  205. package/lib/commonjs/mol-plugin/features.d.ts +9 -0
  206. package/lib/commonjs/mol-plugin/features.js +38 -0
  207. package/lib/commonjs/mol-plugin/spec.js +1 -0
  208. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +12 -0
  209. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +7 -1
  210. package/lib/commonjs/mol-plugin-state/actions/structure.js +150 -72
  211. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  212. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.js +13 -8
  213. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  214. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  215. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
  216. package/lib/commonjs/mol-plugin-state/helpers/structure-clipping.js +1 -1
  217. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +33 -19
  218. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +13 -1
  219. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +13 -8
  220. package/lib/commonjs/mol-plugin-state/manager/structure/selection.js +3 -1
  221. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +32 -0
  222. package/lib/commonjs/mol-plugin-state/transforms/representation.js +2 -2
  223. package/lib/commonjs/mol-plugin-ui/index.d.ts +4 -4
  224. package/lib/commonjs/mol-plugin-ui/index.js +13 -16
  225. package/lib/commonjs/mol-plugin-ui/plugin.js +1 -1
  226. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -6
  227. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +10 -0
  228. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +10 -0
  229. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +10 -0
  230. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +10 -0
  231. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +10 -0
  232. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +10 -0
  233. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +10 -0
  234. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +10 -0
  235. package/lib/commonjs/mol-repr/structure/complex-representation.js +1 -1
  236. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +61 -19
  237. package/lib/commonjs/mol-repr/structure/params.d.ts +81 -19
  238. package/lib/commonjs/mol-repr/structure/registry.d.ts +141 -19
  239. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +30 -0
  240. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
  241. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
  242. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +30 -0
  243. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
  244. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
  245. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.js +1 -1
  246. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
  247. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.js +2 -7
  248. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +30 -0
  249. package/lib/commonjs/mol-repr/structure/representation/label.js +1 -1
  250. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +30 -0
  251. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
  252. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.js +1 -1
  253. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +30 -0
  254. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +30 -0
  255. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +30 -0
  256. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +30 -0
  257. package/lib/commonjs/mol-repr/structure/units-representation.js +1 -1
  258. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +81 -19
  259. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
  260. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
  261. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
  262. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  263. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
  264. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  265. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
  266. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
  267. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
  268. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +10 -0
  269. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +10 -0
  270. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +20 -0
  271. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
  272. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
  273. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
  274. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
  275. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
  276. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
  277. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
  278. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +10 -0
  279. package/lib/commonjs/mol-repr/structure/visual/label-text.js +1 -2
  280. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
  281. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
  282. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
  283. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
  284. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
  285. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
  286. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
  287. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
  288. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
  289. package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
  290. package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
  291. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
  292. package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  293. package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
  294. package/lib/commonjs/mol-repr/structure/visual/util/bond.js +1 -1
  295. package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +3 -2
  296. package/lib/commonjs/mol-repr/structure/visual/util/common.js +2 -5
  297. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
  298. package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js +12 -12
  299. package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
  300. package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js +4 -4
  301. package/lib/commonjs/mol-repr/visual.js +11 -7
  302. package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +33 -57
  303. package/lib/commonjs/mol-repr/volume/direct-volume.js +8 -12
  304. package/lib/commonjs/mol-repr/volume/isosurface.d.ts +60 -0
  305. package/lib/commonjs/mol-repr/volume/isosurface.js +11 -2
  306. package/lib/commonjs/mol-repr/volume/registry.d.ts +31 -19
  307. package/lib/commonjs/mol-repr/volume/representation.d.ts +10 -0
  308. package/lib/commonjs/mol-repr/volume/slice.d.ts +30 -0
  309. package/lib/commonjs/mol-repr/volume/slice.js +2 -2
  310. package/lib/commonjs/mol-repr/volume/util.js +2 -2
  311. package/lib/commonjs/mol-script/language/builder.d.ts +0 -1
  312. package/lib/commonjs/mol-theme/clipping.d.ts +7 -15
  313. package/lib/commonjs/mol-theme/clipping.js +5 -12
  314. package/lib/commonjs/mol-theme/color/volume-value.d.ts +17 -0
  315. package/lib/commonjs/mol-theme/color/volume-value.js +57 -0
  316. package/lib/commonjs/mol-theme/color.d.ts +3 -0
  317. package/lib/commonjs/mol-theme/color.js +2 -0
  318. package/lib/commonjs/mol-util/clip.d.ts +49 -0
  319. package/lib/commonjs/mol-util/clip.js +97 -0
  320. package/lib/commonjs/mol-util/number-packing.d.ts +11 -0
  321. package/lib/commonjs/mol-util/{float-packing.js → number-packing.js} +10 -19
  322. package/lib/examples/alpha-orbitals/index.html +61 -60
  323. package/lib/examples/alpha-orbitals/index.js +4 -5
  324. package/lib/examples/basic-wrapper/index.html +137 -136
  325. package/lib/examples/basic-wrapper/index.js +24 -12
  326. package/lib/examples/lighting/index.d.ts +1 -1
  327. package/lib/examples/lighting/index.html +88 -86
  328. package/lib/examples/lighting/index.js +58 -42
  329. package/lib/examples/proteopedia-wrapper/index.html +236 -235
  330. package/lib/examples/proteopedia-wrapper/index.js +27 -15
  331. package/lib/extensions/alpha-orbitals/transforms.d.ts +0 -1
  332. package/lib/extensions/alpha-orbitals/transforms.js +1 -14
  333. package/lib/extensions/anvil/behavior.d.ts +4 -0
  334. package/lib/extensions/anvil/representation.d.ts +50 -0
  335. package/lib/extensions/cellpack/representation.d.ts +10 -0
  336. package/lib/extensions/dnatco/confal-pyramids/representation.d.ts +30 -0
  337. package/lib/extensions/geo-export/mesh-exporter.js +4 -4
  338. package/lib/extensions/model-archive/quality-assessment/behavior.d.ts +68 -0
  339. package/lib/extensions/model-archive/quality-assessment/behavior.js +233 -0
  340. package/lib/extensions/model-archive/quality-assessment/color/plddt.d.ts +14 -0
  341. package/lib/extensions/model-archive/quality-assessment/color/plddt.js +120 -0
  342. package/lib/extensions/model-archive/quality-assessment/color/qmean.d.ts +12 -0
  343. package/lib/extensions/model-archive/quality-assessment/color/qmean.js +106 -0
  344. package/lib/extensions/model-archive/quality-assessment/prop.d.ts +28 -0
  345. package/lib/extensions/model-archive/quality-assessment/prop.js +127 -0
  346. package/lib/extensions/mp4-export/controls.d.ts +1 -0
  347. package/lib/extensions/mp4-export/controls.js +9 -7
  348. package/lib/extensions/pdbe/structure-quality-report/prop.js +1 -1
  349. package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -2
  350. package/lib/extensions/rcsb/assembly-symmetry/prop.js +1 -1
  351. package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts +10 -0
  352. package/lib/extensions/rcsb/validation-report/prop.js +1 -1
  353. package/lib/extensions/rcsb/validation-report/representation.d.ts +50 -0
  354. package/lib/mol-canvas3d/canvas3d.d.ts +3 -9
  355. package/lib/mol-canvas3d/canvas3d.js +38 -26
  356. package/lib/mol-canvas3d/helper/bounding-sphere-helper.js +3 -2
  357. package/lib/mol-canvas3d/helper/camera-helper.d.ts +4 -0
  358. package/lib/mol-canvas3d/helper/camera-helper.js +2 -2
  359. package/lib/mol-canvas3d/helper/handle-helper.d.ts +4 -0
  360. package/lib/mol-canvas3d/helper/handle-helper.js +2 -2
  361. package/lib/mol-canvas3d/helper/helper.d.ts +2 -0
  362. package/lib/mol-canvas3d/passes/draw.d.ts +13 -1
  363. package/lib/mol-canvas3d/passes/draw.js +16 -15
  364. package/lib/mol-canvas3d/passes/image.d.ts +1 -0
  365. package/lib/mol-canvas3d/passes/image.js +3 -2
  366. package/lib/mol-canvas3d/passes/marking.js +1 -1
  367. package/lib/mol-canvas3d/passes/multi-sample.d.ts +10 -2
  368. package/lib/mol-canvas3d/passes/multi-sample.js +18 -14
  369. package/lib/mol-canvas3d/passes/pick.js +11 -11
  370. package/lib/mol-canvas3d/passes/postprocessing.js +3 -3
  371. package/lib/mol-canvas3d/passes/smaa.js +1 -1
  372. package/lib/mol-geo/geometry/base.d.ts +18 -0
  373. package/lib/mol-geo/geometry/base.js +18 -1
  374. package/lib/mol-geo/geometry/clipping-data.d.ts +1 -3
  375. package/lib/mol-geo/geometry/clipping-data.js +3 -8
  376. package/lib/mol-geo/geometry/color-data.d.ts +1 -1
  377. package/lib/mol-geo/geometry/color-data.js +22 -0
  378. package/lib/mol-geo/geometry/cylinders/cylinders.d.ts +12 -2
  379. package/lib/mol-geo/geometry/cylinders/cylinders.js +2 -2
  380. package/lib/mol-geo/geometry/direct-volume/direct-volume.d.ts +15 -38
  381. package/lib/mol-geo/geometry/direct-volume/direct-volume.js +22 -67
  382. package/lib/mol-geo/geometry/direct-volume/transfer-function.d.ts +2 -4
  383. package/lib/mol-geo/geometry/direct-volume/transfer-function.js +4 -7
  384. package/lib/mol-geo/geometry/image/image.d.ts +10 -0
  385. package/lib/mol-geo/geometry/image/image.js +1 -1
  386. package/lib/mol-geo/geometry/lines/lines.d.ts +11 -0
  387. package/lib/mol-geo/geometry/lines/lines.js +1 -1
  388. package/lib/mol-geo/geometry/marker-data.d.ts +0 -1
  389. package/lib/mol-geo/geometry/marker-data.js +13 -9
  390. package/lib/mol-geo/geometry/mesh/mesh.d.ts +10 -0
  391. package/lib/mol-geo/geometry/mesh/mesh.js +2 -2
  392. package/lib/mol-geo/geometry/points/points.d.ts +11 -1
  393. package/lib/mol-geo/geometry/points/points.js +1 -1
  394. package/lib/mol-geo/geometry/size-data.js +5 -5
  395. package/lib/mol-geo/geometry/spheres/spheres.d.ts +10 -0
  396. package/lib/mol-geo/geometry/spheres/spheres.js +2 -2
  397. package/lib/mol-geo/geometry/text/text.d.ts +10 -0
  398. package/lib/mol-geo/geometry/text/text.js +1 -1
  399. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +10 -0
  400. package/lib/mol-geo/geometry/texture-mesh/texture-mesh.js +2 -2
  401. package/lib/mol-gl/compute/histogram-pyramid/sum.js +2 -2
  402. package/lib/mol-gl/compute/marching-cubes/isosurface.d.ts +2 -2
  403. package/lib/mol-gl/compute/marching-cubes/isosurface.js +10 -9
  404. package/lib/mol-gl/render-object.d.ts +2 -1
  405. package/lib/mol-gl/render-object.js +10 -10
  406. package/lib/mol-gl/renderable/cylinders.d.ts +11 -5
  407. package/lib/mol-gl/renderable/cylinders.js +3 -3
  408. package/lib/mol-gl/renderable/direct-volume.d.ts +15 -14
  409. package/lib/mol-gl/renderable/direct-volume.js +3 -3
  410. package/lib/mol-gl/renderable/image.d.ts +10 -4
  411. package/lib/mol-gl/renderable/image.js +2 -2
  412. package/lib/mol-gl/renderable/lines.d.ts +39 -33
  413. package/lib/mol-gl/renderable/lines.js +4 -4
  414. package/lib/mol-gl/renderable/mesh.d.ts +11 -5
  415. package/lib/mol-gl/renderable/mesh.js +3 -3
  416. package/lib/mol-gl/renderable/points.d.ts +10 -4
  417. package/lib/mol-gl/renderable/points.js +2 -2
  418. package/lib/mol-gl/renderable/schema.d.ts +10 -11
  419. package/lib/mol-gl/renderable/schema.js +4 -10
  420. package/lib/mol-gl/renderable/spheres.d.ts +11 -5
  421. package/lib/mol-gl/renderable/spheres.js +3 -3
  422. package/lib/mol-gl/renderable/text.d.ts +10 -4
  423. package/lib/mol-gl/renderable/text.js +2 -2
  424. package/lib/mol-gl/renderable/texture-mesh.d.ts +11 -6
  425. package/lib/mol-gl/renderable/texture-mesh.js +3 -3
  426. package/lib/mol-gl/renderable.d.ts +0 -1
  427. package/lib/mol-gl/renderer.d.ts +12 -12
  428. package/lib/mol-gl/renderer.js +24 -93
  429. package/lib/mol-gl/scene.d.ts +2 -2
  430. package/lib/mol-gl/scene.js +7 -5
  431. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +1 -1
  432. package/lib/mol-gl/shader/chunks/apply-light-color.glsl.js +1 -1
  433. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  434. package/lib/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  435. package/lib/mol-gl/shader/chunks/assign-group.glsl.d.ts +1 -1
  436. package/lib/mol-gl/shader/chunks/assign-group.glsl.js +1 -1
  437. package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.d.ts +1 -1
  438. package/lib/mol-gl/shader/chunks/assign-marker-varying.glsl.js +1 -1
  439. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  440. package/lib/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  441. package/lib/mol-gl/shader/chunks/assign-position.glsl.d.ts +1 -1
  442. package/lib/mol-gl/shader/chunks/assign-position.glsl.js +1 -1
  443. package/lib/mol-gl/shader/chunks/assign-size.glsl.d.ts +1 -1
  444. package/lib/mol-gl/shader/chunks/assign-size.glsl.js +1 -1
  445. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  446. package/lib/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  447. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  448. package/lib/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  449. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.d.ts +1 -1
  450. package/lib/mol-gl/shader/chunks/common-frag-params.glsl.js +1 -1
  451. package/lib/mol-gl/shader/chunks/common-vert-params.glsl.d.ts +1 -1
  452. package/lib/mol-gl/shader/chunks/common-vert-params.glsl.js +1 -1
  453. package/lib/mol-gl/shader/chunks/common.glsl.d.ts +1 -1
  454. package/lib/mol-gl/shader/chunks/common.glsl.js +1 -1
  455. package/lib/mol-gl/shader/chunks/wboit-write.glsl.d.ts +1 -1
  456. package/lib/mol-gl/shader/chunks/wboit-write.glsl.js +1 -1
  457. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  458. package/lib/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  459. package/lib/mol-gl/shader/cylinders.frag.d.ts +1 -1
  460. package/lib/mol-gl/shader/cylinders.frag.js +1 -1
  461. package/lib/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  462. package/lib/mol-gl/shader/direct-volume.frag.js +1 -1
  463. package/lib/mol-gl/shader/gaussian-density.frag.d.ts +1 -1
  464. package/lib/mol-gl/shader/gaussian-density.frag.js +1 -1
  465. package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.d.ts +1 -1
  466. package/lib/mol-gl/shader/histogram-pyramid/reduction.frag.js +1 -1
  467. package/lib/mol-gl/shader/image.frag.d.ts +1 -1
  468. package/lib/mol-gl/shader/image.frag.js +1 -1
  469. package/lib/mol-gl/shader/marching-cubes/isosurface.frag.d.ts +1 -1
  470. package/lib/mol-gl/shader/marching-cubes/isosurface.frag.js +1 -1
  471. package/lib/mol-gl/shader/mesh.frag.d.ts +1 -1
  472. package/lib/mol-gl/shader/mesh.frag.js +1 -1
  473. package/lib/mol-gl/shader/mesh.vert.d.ts +1 -1
  474. package/lib/mol-gl/shader/mesh.vert.js +1 -1
  475. package/lib/mol-gl/shader/spheres.frag.d.ts +1 -1
  476. package/lib/mol-gl/shader/spheres.frag.js +1 -1
  477. package/lib/mol-gl/shader-code.d.ts +3 -1
  478. package/lib/mol-gl/shader-code.js +43 -14
  479. package/lib/mol-gl/webgl/render-item.d.ts +7 -6
  480. package/lib/mol-gl/webgl/render-item.js +8 -6
  481. package/lib/mol-gl/webgl/resources.js +8 -1
  482. package/lib/mol-io/reader/cif/schema/mmcif.d.ts +326 -1
  483. package/lib/mol-io/reader/cif/schema/mmcif.js +326 -1
  484. package/lib/mol-math/geometry/gaussian-density/gpu.js +2 -2
  485. package/lib/mol-math/geometry/symmetry-operator.js +3 -2
  486. package/lib/mol-math/linear-algebra/3d/quat.d.ts +9 -1
  487. package/lib/mol-math/linear-algebra/3d/quat.js +20 -1
  488. package/lib/mol-model/structure/model/model.d.ts +1 -0
  489. package/lib/mol-model/structure/model/model.js +8 -2
  490. package/lib/mol-model/structure/model/properties/atomic/hierarchy.d.ts +6 -1
  491. package/lib/mol-model/structure/model/properties/atomic/hierarchy.js +1 -1
  492. package/lib/mol-model/structure/model/properties/utils/atomic-derived.d.ts +1 -1
  493. package/lib/mol-model/structure/model/properties/utils/atomic-derived.js +5 -2
  494. package/lib/mol-model/structure/model/properties/utils/atomic-index.d.ts +1 -1
  495. package/lib/mol-model/structure/model/properties/utils/atomic-index.js +12 -1
  496. package/lib/mol-model/structure/model/types.js +9 -0
  497. package/lib/mol-model/structure/structure/unit/rings.js +2 -0
  498. package/lib/mol-model-formats/shape/ply.d.ts +20 -0
  499. package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +10 -0
  500. package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +10 -0
  501. package/lib/mol-model-props/computed/representations/interactions.d.ts +30 -0
  502. package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +40 -0
  503. package/lib/mol-plugin/behavior/dynamic/representation.js +4 -6
  504. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +11 -0
  505. package/lib/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +3 -1
  506. package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +3 -2
  507. package/lib/mol-plugin/commands.d.ts +1 -4
  508. package/lib/mol-plugin/config.d.ts +1 -1
  509. package/lib/mol-plugin/config.js +4 -23
  510. package/lib/mol-plugin/features.d.ts +9 -0
  511. package/lib/mol-plugin/features.js +35 -0
  512. package/lib/mol-plugin/spec.js +1 -0
  513. package/lib/mol-plugin/util/viewport-screenshot.d.ts +12 -0
  514. package/lib/mol-plugin/version.js +2 -2
  515. package/lib/mol-plugin-state/actions/structure.d.ts +7 -1
  516. package/lib/mol-plugin-state/actions/structure.js +150 -72
  517. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +5 -355
  518. package/lib/mol-plugin-state/builder/structure/hierarchy-preset.js +14 -9
  519. package/lib/mol-plugin-state/builder/structure/hierarchy.d.ts +1 -71
  520. package/lib/mol-plugin-state/builder/structure/representation-preset.d.ts +4 -4
  521. package/lib/mol-plugin-state/helpers/structure-clipping.d.ts +1 -1
  522. package/lib/mol-plugin-state/helpers/structure-clipping.js +1 -1
  523. package/lib/mol-plugin-state/helpers/structure-selection-query.js +34 -20
  524. package/lib/mol-plugin-state/manager/structure/component.d.ts +13 -1
  525. package/lib/mol-plugin-state/manager/structure/component.js +14 -9
  526. package/lib/mol-plugin-state/manager/structure/selection.js +3 -1
  527. package/lib/mol-plugin-state/transforms/representation.d.ts +32 -0
  528. package/lib/mol-plugin-state/transforms/representation.js +2 -2
  529. package/lib/mol-plugin-ui/index.d.ts +4 -4
  530. package/lib/mol-plugin-ui/index.js +11 -13
  531. package/lib/mol-plugin-ui/plugin.js +1 -1
  532. package/lib/mol-plugin-ui/skin/base/base.scss +32 -32
  533. package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
  534. package/lib/mol-plugin-ui/skin/base/components/controls.scss +418 -418
  535. package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
  536. package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
  537. package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
  538. package/lib/mol-plugin-ui/skin/base/components/misc.scss +643 -643
  539. package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
  540. package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
  541. package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
  542. package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
  543. package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
  544. package/lib/mol-plugin-ui/skin/base/components/viewport.scss +127 -127
  545. package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
  546. package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
  547. package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
  548. package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
  549. package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
  550. package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
  551. package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
  552. package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
  553. package/lib/mol-plugin-ui/skin/base/variables.scss +85 -85
  554. package/lib/mol-plugin-ui/skin/blue.scss +1 -1
  555. package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
  556. package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
  557. package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
  558. package/lib/mol-plugin-ui/skin/dark.scss +1 -1
  559. package/lib/mol-plugin-ui/skin/light.scss +1 -1
  560. package/lib/mol-plugin-ui/viewport/simple-settings.js +2 -6
  561. package/lib/mol-repr/shape/loci/angle.d.ts +10 -0
  562. package/lib/mol-repr/shape/loci/common.d.ts +10 -0
  563. package/lib/mol-repr/shape/loci/dihedral.d.ts +10 -0
  564. package/lib/mol-repr/shape/loci/distance.d.ts +10 -0
  565. package/lib/mol-repr/shape/loci/label.d.ts +10 -0
  566. package/lib/mol-repr/shape/loci/orientation.d.ts +10 -0
  567. package/lib/mol-repr/shape/loci/plane.d.ts +10 -0
  568. package/lib/mol-repr/shape/model/unitcell.d.ts +10 -0
  569. package/lib/mol-repr/structure/complex-representation.js +1 -1
  570. package/lib/mol-repr/structure/complex-visual.d.ts +61 -19
  571. package/lib/mol-repr/structure/params.d.ts +81 -19
  572. package/lib/mol-repr/structure/registry.d.ts +141 -19
  573. package/lib/mol-repr/structure/representation/backbone.d.ts +30 -0
  574. package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +30 -0
  575. package/lib/mol-repr/structure/representation/carbohydrate.d.ts +30 -0
  576. package/lib/mol-repr/structure/representation/cartoon.d.ts +30 -0
  577. package/lib/mol-repr/structure/representation/ellipsoid.d.ts +30 -0
  578. package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +30 -0
  579. package/lib/mol-repr/structure/representation/gaussian-surface.js +1 -1
  580. package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +34 -58
  581. package/lib/mol-repr/structure/representation/gaussian-volume.js +2 -7
  582. package/lib/mol-repr/structure/representation/label.d.ts +30 -0
  583. package/lib/mol-repr/structure/representation/label.js +1 -1
  584. package/lib/mol-repr/structure/representation/line.d.ts +30 -0
  585. package/lib/mol-repr/structure/representation/molecular-surface.d.ts +30 -0
  586. package/lib/mol-repr/structure/representation/molecular-surface.js +1 -1
  587. package/lib/mol-repr/structure/representation/orientation.d.ts +30 -0
  588. package/lib/mol-repr/structure/representation/point.d.ts +30 -0
  589. package/lib/mol-repr/structure/representation/putty.d.ts +30 -0
  590. package/lib/mol-repr/structure/representation/spacefill.d.ts +30 -0
  591. package/lib/mol-repr/structure/units-representation.js +1 -1
  592. package/lib/mol-repr/structure/units-visual.d.ts +81 -19
  593. package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +20 -0
  594. package/lib/mol-repr/structure/visual/bond-inter-unit-line.d.ts +10 -0
  595. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +20 -0
  596. package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.js +2 -2
  597. package/lib/mol-repr/structure/visual/bond-intra-unit-line.d.ts +10 -0
  598. package/lib/mol-repr/structure/visual/bond-intra-unit-line.js +2 -2
  599. package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +10 -0
  600. package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +10 -0
  601. package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +10 -0
  602. package/lib/mol-repr/structure/visual/element-cross.d.ts +10 -0
  603. package/lib/mol-repr/structure/visual/element-point.d.ts +10 -0
  604. package/lib/mol-repr/structure/visual/element-sphere.d.ts +20 -0
  605. package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +10 -0
  606. package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +22 -38
  607. package/lib/mol-repr/structure/visual/gaussian-density-volume.js +8 -6
  608. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +40 -0
  609. package/lib/mol-repr/structure/visual/gaussian-surface-mesh.js +11 -8
  610. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +10 -0
  611. package/lib/mol-repr/structure/visual/gaussian-surface-wireframe.js +1 -1
  612. package/lib/mol-repr/structure/visual/label-text.d.ts +10 -0
  613. package/lib/mol-repr/structure/visual/label-text.js +1 -2
  614. package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +10 -0
  615. package/lib/mol-repr/structure/visual/molecular-surface-mesh.js +1 -1
  616. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +10 -0
  617. package/lib/mol-repr/structure/visual/molecular-surface-wireframe.js +1 -1
  618. package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +10 -0
  619. package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +10 -0
  620. package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +10 -0
  621. package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +20 -0
  622. package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +20 -0
  623. package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +10 -0
  624. package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +10 -0
  625. package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +10 -0
  626. package/lib/mol-repr/structure/visual/polymer-trace-mesh.js +1 -1
  627. package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +10 -0
  628. package/lib/mol-repr/structure/visual/util/bond.js +1 -1
  629. package/lib/mol-repr/structure/visual/util/common.d.ts +3 -2
  630. package/lib/mol-repr/structure/visual/util/common.js +2 -5
  631. package/lib/mol-repr/structure/visual/util/gaussian.d.ts +7 -6
  632. package/lib/mol-repr/structure/visual/util/gaussian.js +12 -12
  633. package/lib/mol-repr/structure/visual/util/molecular-surface.d.ts +2 -1
  634. package/lib/mol-repr/structure/visual/util/molecular-surface.js +4 -4
  635. package/lib/mol-repr/visual.js +11 -7
  636. package/lib/mol-repr/volume/direct-volume.d.ts +33 -57
  637. package/lib/mol-repr/volume/direct-volume.js +8 -12
  638. package/lib/mol-repr/volume/isosurface.d.ts +60 -0
  639. package/lib/mol-repr/volume/isosurface.js +11 -2
  640. package/lib/mol-repr/volume/registry.d.ts +31 -19
  641. package/lib/mol-repr/volume/representation.d.ts +10 -0
  642. package/lib/mol-repr/volume/slice.d.ts +30 -0
  643. package/lib/mol-repr/volume/slice.js +2 -2
  644. package/lib/mol-repr/volume/util.js +2 -2
  645. package/lib/mol-script/language/builder.d.ts +0 -1
  646. package/lib/mol-theme/clipping.d.ts +7 -15
  647. package/lib/mol-theme/clipping.js +5 -12
  648. package/lib/mol-theme/color/volume-value.d.ts +17 -0
  649. package/lib/mol-theme/color/volume-value.js +52 -0
  650. package/lib/mol-theme/color.d.ts +3 -0
  651. package/lib/mol-theme/color.js +2 -0
  652. package/lib/mol-util/clip.d.ts +49 -0
  653. package/lib/mol-util/clip.js +93 -0
  654. package/lib/mol-util/number-packing.d.ts +11 -0
  655. package/lib/mol-util/{float-packing.js → number-packing.js} +7 -14
  656. package/package.json +162 -162
  657. package/lib/commonjs/mol-util/float-packing.d.ts +0 -15
  658. package/lib/mol-util/float-packing.d.ts +0 -15

There are too many changes on this page to be displayed.


The amount of changes on this page would crash your brower.

You can still verify the content by downloading the package file manually.