milens 0.7.0 → 0.7.1

package/dist/parser/extract.js

@@ -159,24 +159,35 @@ function detectHeritageType(node) {
     }
     return 'extends';
 }
-function buildSpanIndex(symbols) {
-    const spans = [];
-    for (const s of symbols) {
-        if (s.kind === 'function' || s.kind === 'method' || s.kind === 'class' || s.kind === 'struct' || s.kind === 'trait') {
-            spans.push({ startLine: s.startLine, endLine: s.endLine, id: s.id });
-        }
-    }
-    // Sort by startLine desc so we find the innermost (tightest) enclosing first
-    spans.sort((a, b) => b.startLine - a.startLine);
-    return spans;
-}
-function findEnclosing(spans, line) {
-    // Linear scan on pre-sorted array — tightest match wins (innermost symbol)
-    for (let i = 0; i < spans.length; i++) {
-        const sp = spans[i];
-        if (sp.startLine <= line && sp.endLine >= line)
-            return sp.id;
-    }
+// ── Enclosing symbol lookup via tree-sitter's own position index ──
+// Scope boundaries here are exactly the parse tree's node boundaries — a properly
+// nested (laminar) interval family — so the parse tree itself is already the optimal
+// data structure for "which scope contains line N", no separate index needed.
+// `descendantForPosition` walks the tree in ~O(log n), then we walk up `.parent`
+// until we hit a node we recorded as a symbol (function/method/class/struct/trait).
+// This replaces a flat sorted-span array + linear scan, which was O(n) per lookup
+// (O(n²) total across a file with many calls) in the worst case of many sibling
+// top-level symbols — see the "current vs descendantForPosition" benchmark discussed
+// in code review: ~10-20x faster on synthetic files with 16k-32k sibling functions.
+//
+// Note: SyntaxNode objects from web-tree-sitter are recreated on every access, so
+// `===` on two nodes representing the same underlying tree node is NOT reliable —
+// use the stable numeric `.id` field instead (confirmed via the official .d.ts and
+// empirical testing).
+const ENCLOSING_SCOPE_KINDS = new Set(['function', 'method', 'class', 'struct', 'trait']);
+function findEnclosingViaAst(root, position, containerNodeIds) {
+    // Must be the exact node position, not a synthesized `{row, column: 0}` — column 0
+    // usually falls on leading indentation, which belongs to the *parent* node (e.g. the
+    // class body) rather than the target node (e.g. a method), so it under-shoots the
+    // tightest enclosing scope.
+    let node = root.descendantForPosition(position);
+    while (node) {
+        const id = containerNodeIds.get(node.id);
+        if (id !== undefined)
+            return id;
+        node = node.parent;
+    }
+    return undefined;
 }
 // ── Symbol query type mapping (constant) ──
 const SYMBOL_QUERY_TYPES = [
@@ -206,6 +217,9 @@ export function extractFromTree(tree, lang, spec, filePath) {
     const returnTypes = [];
     const callResultBindings = [];
     const exportedNames = new Set();
+    // AST node id → symbol id, for function/method/class/struct/trait symbols only —
+    // see findEnclosingViaAst above.
+    const containerNodeIds = new Map();
     const root = tree.rootNode;
     function runQuery(queryStr) {
         const q = getOrCompileQuery(lang, queryStr);
@@ -250,6 +264,9 @@ export function extractFromTree(tree, lang, spec, filePath) {
                 if (parentClass)
                     sym.parentId = parentClass.id;
             }
+            if (ENCLOSING_SCOPE_KINDS.has(kind)) {
+                containerNodeIds.set(defNode.id, sym.id);
+            }
             symbols.push(sym);
         }
     }
@@ -312,13 +329,13 @@ export function extractFromTree(tree, lang, spec, filePath) {
                 names,
                 isDefault: isDef,
                 isWildcard: !isDef && names.length === 0,
+                isDynamic: defNode.type === 'call_expression',
                 line: defNode.startPosition.row + 1,
             });
         }
     }
     // ── Extract calls (with span index for fast enclosing lookup) ──
     if (spec.queries.calls) {
-        const spans = buildSpanIndex(symbols);
         for (const match of runQuery(spec.queries.calls)) {
             const callee = captureText(match, 'callee');
             const defNode = captureNode(match, 'def');
@@ -326,12 +343,19 @@ export function extractFromTree(tree, lang, spec, filePath) {
                 continue;
             const callLine = defNode.startPosition.row + 1;
             const receiver = captureText(match, 'receiver');
+            // Distinguish "identifier is the function being invoked" from "identifier is merely
+            // passed as an argument" (e.g. `onMounted(handler)`, decorator arguments) — the latter
+            // captures @callee whose parent is an `arguments` node, not a call/new expression.
+            const calleeNode = captureNode(match, 'callee');
+            const parentType = calleeNode?.parent?.type;
+            const isArgumentRef = parentType === 'arguments' || parentType === 'pair' || parentType === 'array';
             calls.push({
                 filePath,
-                enclosingSymbolId: findEnclosing(spans, callLine) ?? `${filePath}#module:_top:0`,
+                enclosingSymbolId: findEnclosingViaAst(root, defNode.startPosition, containerNodeIds) ?? `${filePath}#module:_top:0`,
                 calleeName: callee,
                 receiver,
                 line: callLine,
+                ...(isArgumentRef ? { isArgumentRef: true } : {}),
             });
         }
     }
@@ -380,8 +404,7 @@ export function extractFromTree(tree, lang, spec, filePath) {
     }
     // ── Extract type bindings (variable → type mappings, scope-aware) ──
     if (spec.queries.typeBindings) {
-        const bindingSpans = buildSpanIndex(symbols);
-        const seen = new Map(); // "scope::varName" → line (dedup: last wins)
+        const seen = new Map(); // "scope::varName" → line (dedup: first-seen wins)
         for (const match of runQuery(spec.queries.typeBindings)) {
             const varName = captureText(match, 'var');
             const typeName = captureText(match, 'type');
@@ -390,8 +413,12 @@ export function extractFromTree(tree, lang, spec, filePath) {
             const defNode = captureNode(match, 'var');
             const line = defNode ? defNode.startPosition.row + 1 : 0;
             // Scope: find enclosing function/method/class for this binding
-            const scope = findEnclosing(bindingSpans, line);
-            // Deduplicate per scope: prefer type annotation over new expression (later match wins)
+            const scope = defNode ? findEnclosingViaAst(root, defNode.startPosition, containerNodeIds) : undefined;
+            // Deduplicate per scope: when a type-annotation match and a new-expression match land on
+            // the same line (e.g. `const db: DbInterface = new SqliteDb()`), keep whichever the query
+            // iterates first and skip the rest — in practice the type-annotation pattern is always
+            // visited before the new-expression pattern for the same declarator, so this prefers the
+            // explicit annotation over the constructor-inferred type.
             const dedupKey = `${scope ?? ''}::${varName}`;
             const existingLine = seen.get(dedupKey);
             if (existingLine !== undefined && existingLine === line)
@@ -402,7 +429,6 @@ export function extractFromTree(tree, lang, spec, filePath) {
     }
     // ── Extract assignment chains (variable = identifier, for type propagation) ──
     if (spec.queries.assignmentChains) {
-        const chainSpans = buildSpanIndex(symbols);
         for (const match of runQuery(spec.queries.assignmentChains)) {
             const target = captureText(match, 'target');
             const source = captureText(match, 'source');
@@ -410,7 +436,7 @@ export function extractFromTree(tree, lang, spec, filePath) {
                 continue;
             const defNode = captureNode(match, 'target');
             const line = defNode ? defNode.startPosition.row + 1 : 0;
-            const scope = findEnclosing(chainSpans, line);
+            const scope = defNode ? findEnclosingViaAst(root, defNode.startPosition, containerNodeIds) : undefined;
             assignmentBindings.push({ filePath, target, source, line, scope });
         }
     }
@@ -430,7 +456,6 @@ export function extractFromTree(tree, lang, spec, filePath) {
     }
     // ── Extract call result bindings (const x = func()) ──
     if (spec.queries.callResultBindings) {
-        const crSpans = buildSpanIndex(symbols);
         for (const match of runQuery(spec.queries.callResultBindings)) {
             const target = captureText(match, 'var');
             const calleeName = captureText(match, 'callee');
@@ -438,7 +463,7 @@ export function extractFromTree(tree, lang, spec, filePath) {
                 continue;
             const defNode = captureNode(match, 'var');
             const line = defNode ? defNode.startPosition.row + 1 : 0;
-            const scope = findEnclosing(crSpans, line);
+            const scope = defNode ? findEnclosingViaAst(root, defNode.startPosition, containerNodeIds) : undefined;
             const receiver = captureText(match, 'receiver');
             callResultBindings.push({ filePath, target, calleeName, receiver, line, scope });
         }

package/dist/parser/extract.js.map

@@ -1 +1 @@
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package/dist/parser/lang-css.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-css.d.ts.map

package/dist/parser/lang-go.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-go.d.ts.map

package/dist/parser/lang-html.d.ts

@@ -18,4 +18,3 @@ export declare function extractHtmlRefs(source: string, filePath: string): RawIm
  */
 export declare function extractHtmlLinks(source: string, filePath: string): RawImport[];
 export default spec;
-//# sourceMappingURL=lang-html.d.ts.map

package/dist/parser/lang-java.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-java.d.ts.map

package/dist/parser/lang-js.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-js.d.ts.map

package/dist/parser/lang-md.d.ts

@@ -6,4 +6,3 @@ declare const spec: LangSpec;
  */
 export declare function extractMarkdown(source: string, filePath: string): ExtractionResult;
 export default spec;
-//# sourceMappingURL=lang-md.d.ts.map

package/dist/parser/lang-php.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-php.d.ts.map

package/dist/parser/lang-py.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-py.d.ts.map

package/dist/parser/lang-ruby.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-ruby.d.ts.map

package/dist/parser/lang-rust.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-rust.d.ts.map

package/dist/parser/lang-ts.d.ts

@@ -1,4 +1,3 @@
 import type { LangSpec } from './extract.js';
 declare const spec: LangSpec;
 export default spec;
-//# sourceMappingURL=lang-ts.d.ts.map

package/dist/parser/lang-vue.d.ts

@@ -31,4 +31,3 @@ export declare function extractVueTemplateAst(parser: Parser, source: string, fi
  */
 export declare function extractVueCompositionApi(scriptContent: string, filePath: string, lineOffset: number): CodeSymbol[];
 export default spec;
-//# sourceMappingURL=lang-vue.d.ts.map

package/dist/parser/language-provider.d.ts

@@ -24,4 +24,3 @@ export interface LanguageProvider {
     /** Optional: infer an implicit receiver for a call (e.g. `this` in JS) */
     inferImplicitReceiver?(call: RawCall, context: ParseContext): string | null;
 }
-//# sourceMappingURL=language-provider.d.ts.map

package/dist/parser/languages.d.ts

@@ -3,4 +3,3 @@ declare const ALL_LANGS: LangSpec[];
 export declare function langForFile(filePath: string): LangSpec | undefined;
 export declare function supportedExtensions(): string[];
 export { ALL_LANGS };
-//# sourceMappingURL=languages.d.ts.map

package/dist/parser/loader.d.ts

@@ -2,4 +2,3 @@ import Parser from 'web-tree-sitter';
 export declare function initTreeSitter(): Promise<void>;
 export declare function loadLanguage(wasmName: string): Promise<Parser.Language>;
 export declare function getParser(wasmName: string): Promise<Parser>;
-//# sourceMappingURL=loader.d.ts.map

package/dist/security/deps.d.ts

@@ -35,4 +35,3 @@ export declare function checkVulnerabilities(deps: Dependency[]): VulnerabilityR
  * Full audit: detect ecosystem → parse dependencies → check vulnerabilities.
  */
 export declare function auditDependencies(rootPath: string): VulnerabilityReport;
-//# sourceMappingURL=deps.d.ts.map

package/dist/security/rules.d.ts

@@ -40,4 +40,3 @@ export declare const ALL_RULES: SecurityRule[];
 export declare function loadRules(): SecurityRule[];
 export declare function getRulesByCategory(category: SecurityCategory): SecurityRule[];
 export declare function getRulesBySeverity(severity: string): SecurityRule[];
-//# sourceMappingURL=rules.d.ts.map

package/dist/security/rules.js

@@ -11,7 +11,8 @@ export const OWASP_CATEGORIES = {
     'A09:2021': 'Security Logging and Monitoring Failures',
     'A10:2021': 'Server-Side Request Forgery (SSRF)',
 };
-const DEFAULT_EXCLUDE = '**/*.test.*,**/*.spec.*,**/node_modules/**,**/security/rules.ts,**/metric-milens-tool*.md,**/docs/**,**/*.html';
+const DEFAULT_EXCLUDE = '**/*.test.*,**/*.spec.*,**/node_modules/**,**/security/rules.ts,**/metric-milens-tool*.md,**/docs/**,**/*.html,**/mcp-prompts.ts,**/.agents/skills/**';
+const SECRETS_EXCLUDE = DEFAULT_EXCLUDE + ',**/*.md,**/*.mdx';
 // ── Language-specific fileGlobs for cross-language coverage ──
 const JS_TS = '**/*.{js,jsx,ts,tsx,mjs,cjs}';
 const JS_TS_PY = '**/*.{js,jsx,ts,tsx,mjs,cjs,py}';
@@ -38,7 +39,7 @@ export const ALL_RULES = [
             /(?:password|passwd|pwd)\s*[:=]\s*['"`][^'"`\n]{4,}['"`]/i,
             /(?:password|passwd|pwd)\s*=\s*(?!process\.env\.)[^'"`\s;]{4,}/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Replace hardcoded password with process.env.DB_PASSWORD or a secrets manager.',
         confidence: 0.92,
         falsePositiveRisk: 'low', enabled: true,
@@ -54,7 +55,7 @@ export const ALL_RULES = [
             /(?:secret|secretKey|secret_key|clientSecret)\s*[:=]\s*['"`][A-Za-z0-9_\-+=/]{16,}['"`]/i,
             /(?:signingKey|signing_key|encryptionKey|encryption_key)\s*[:=]\s*['"`][A-Za-z0-9_\-+=/]{16,}['"`]/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Store secrets in a vault (HashiCorp Vault, AWS Secrets Manager, etc.) or environment variables.',
         confidence: 0.90,
         falsePositiveRisk: 'low', enabled: true,
@@ -70,7 +71,7 @@ export const ALL_RULES = [
             /(?:api[_-]?key|apiKey|apikey)\s*[:=]\s*['"`][A-Za-z0-9_\-]{20,}['"`]/i,
             /(?:api[_-]?secret|apiSecret)\s*[:=]\s*['"`][A-Za-z0-9_\-]{20,}['"`]/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Move the API key to process.env.API_KEY and never commit credentials.',
         confidence: 0.93,
         falsePositiveRisk: 'low', enabled: true,
@@ -86,7 +87,7 @@ export const ALL_RULES = [
             /\bAKIA[0-9A-Z]{16}\b/,
             /(?:aws[_-]?access[_-]?key|AWS_ACCESS_KEY_ID)\s*[:=]\s*['"`]AKIA[0-9A-Z]{16}['"`]/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Use IAM roles, instance profiles, or AWS Secrets Manager. If the key is leaked, deactivate it in the AWS console immediately.',
         confidence: 0.95,
         falsePositiveRisk: 'low', enabled: true,
@@ -102,7 +103,7 @@ export const ALL_RULES = [
             /\b(sk-(?:live|test|ant|admin)-[A-Za-z0-9_\-]{30,})\b/,
             /(?:stripe[_-]?key|openai[_-]?key|OPENAI_API_KEY)\s*[:=]\s*['"`]sk-[A-Za-z0-9_\-]+['"`]/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Use environment variables (STRIPE_SECRET_KEY, OPENAI_API_KEY) and never commit sk- keys.',
         confidence: 0.95,
         falsePositiveRisk: 'low', enabled: true,
@@ -118,7 +119,7 @@ export const ALL_RULES = [
             /\bghp_[A-Za-z0-9_]{36,}\b/,
             /(?:github[_-]?token|GITHUB_TOKEN|gh[_-]?token)\s*[:=]\s*['"`]ghp_[A-Za-z0-9_]+['"`]/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Use GITHUB_TOKEN in Actions workflows, or store PATs in repository secrets.',
         confidence: 0.95,
         falsePositiveRisk: 'low', enabled: true,
@@ -134,7 +135,7 @@ export const ALL_RULES = [
             /-----BEGIN\s+(?:RSA|ENCRYPTED)\s+PRIVATE\s+KEY-----/,
             /['"`]-----BEGIN\s+(?:RSA|ENCRYPTED)\s+PRIVATE\s+KEY-----/,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Store private keys outside the repository; use a secrets manager or PKI infrastructure.',
         confidence: 0.95,
         falsePositiveRisk: 'low', enabled: true,
@@ -150,7 +151,7 @@ export const ALL_RULES = [
             /-----BEGIN\s+EC\s+PRIVATE\s+KEY-----/,
             /['"`]-----BEGIN\s+EC\s+PRIVATE\s+KEY-----/,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Store private keys outside the repository; use a secrets manager or PKI infrastructure.',
         confidence: 0.95,
         falsePositiveRisk: 'low', enabled: true,
@@ -166,7 +167,7 @@ export const ALL_RULES = [
             /(?:token|authToken|accessToken|bearerToken)\s*[:=]\s*['"`][A-Za-z0-9_\-+=.]{20,}['"`]/i,
             /(?:authorization|Authorization)\s*[:=]\s*['"`]Bearer\s+[A-Za-z0-9_\-+=.]+['"`]/i,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Use environment variables or a secure token store. Rotate the exposed token.',
         confidence: 0.88,
         falsePositiveRisk: 'low', enabled: true,
@@ -183,7 +184,7 @@ export const ALL_RULES = [
             /(?:\.env\s*(?:file)?\s*[:=]\s*['"`][^'"`]*['"`])/i,
             /process\.env\.([A-Z_]+)\s*=\s*['"`][^'"`]{8,}['"`]/,
         ],
-        excludeGlob: DEFAULT_EXCLUDE,
+        excludeGlob: SECRETS_EXCLUDE,
         fix: 'Never assign secret values to process.env in code. Use external .env files (gitignored) or a secrets manager.',
         confidence: 0.85,
         falsePositiveRisk: 'low', enabled: true,
@@ -1071,7 +1072,7 @@ export const ALL_RULES = [
     { id: 'SEC-148', category: 'data-leak', owasp: 'A09:2021', severity: 'HIGH', name: 'Stack Trace Exposure', description: 'Error details sent to client.', patterns: [/res\.send\s*\(\s*err\.stack/, /\.status.*\.send.*err/, /\.json\s*\(\s*\{\s*error\s*:\s*err/, /traceback\.format_exc\s*\(\s*\)/], fileGlob: JS_TS_PY, excludeGlob: DEFAULT_EXCLUDE, fix: 'Log errors server-side. Send generic error messages.', confidence: 0.90, falsePositiveRisk: 'low', enabled: true },
     { id: 'SEC-149', category: 'data-leak', owasp: 'A09:2021', severity: 'MEDIUM', name: 'Source Map Exposure', description: 'Source maps deployed to production.', patterns: [/\.map['"`]\s*\)/, /sourceMap.*true.*production/i, /devtool.*source-map/], fileGlob: JS_TS, excludeGlob: DEFAULT_EXCLUDE, fix: 'Do not deploy source maps to production.', confidence: 0.55, falsePositiveRisk: 'medium', enabled: true },
     { id: 'SEC-150', category: 'data-leak', owasp: 'A09:2021', severity: 'HIGH', name: 'Git Directory Exposure', description: '.git directory accessible.', patterns: [/\.git\/HEAD/, /\.git\/config/], fileGlob: '**/*.{json,yaml,yml}', fix: 'Ensure .git directory is not deployed.', confidence: 0.95, falsePositiveRisk: 'low', enabled: true },
-    { id: 'SEC-151', category: 'data-leak', owasp: 'A09:2021', severity: 'MEDIUM', name: 'Backup File Exposure', description: 'Backup files deployed.', patterns: [/\.bak['"`]/, /\.backup['"`]/, /\.old['"`]/, /\.swp['"`]/, /~\s*$/], excludeGlob: DEFAULT_EXCLUDE, fix: 'Remove backup files before deployment.', confidence: 0.50, falsePositiveRisk: 'high', enabled: true },
+    { id: 'SEC-151', category: 'data-leak', owasp: 'A09:2021', severity: 'MEDIUM', name: 'Backup File Exposure', description: 'Backup files deployed.', patterns: [/\.bak['"`]/, /\.backup['"`]/, /\.old['"`]/, /\.swp['"`]/, /~\s*$/], excludeGlob: DEFAULT_EXCLUDE + ',src/server/tools/security.ts', fix: 'Remove backup files before deployment.', confidence: 0.50, falsePositiveRisk: 'high', enabled: true },
     // ═══════════════════════════════════════════════════════════════
     // SEC-152 – SEC-156 : Docker Security (A05:2021)
     // ═══════════════════════════════════════════════════════════════