milens 0.7.0 → 0.7.1

package/dist/server/tools/resources.js

@@ -0,0 +1,103 @@
+import { ResourceTemplate as Rt } from '@modelcontextprotocol/sdk/server/mcp.js';
+export function registerResources(server, deps) {
+    const { getDb, fmtSymbol } = deps;
+    server.resource('symbol', new Rt('milens://symbol/{name}', { list: undefined }), { description: 'Symbol context: definition, incoming refs, outgoing deps, role/heat metadata' }, async (uri, { name }) => {
+        const { db } = getDb();
+        const symbols = db.findSymbolByName(name);
+        if (symbols.length === 0) {
+            return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: `"${name}" not found.` }] };
+        }
+        const lines = [];
+        for (const sym of symbols) {
+            lines.push(`${fmtSymbol(sym, 'L2')}${sym.exported ? ' (exported)' : ''}`);
+            const incoming = db.getIncomingLinks(sym.id).filter(l => l.type !== 'contains');
+            if (incoming.length > 0) {
+                lines.push(`incoming (${incoming.length}):`);
+                for (const l of incoming) {
+                    const from = db.findSymbolById(l.fromId);
+                    lines.push(`  ${l.type}: ${from ? fmtSymbol(from) : l.fromId}`);
+                }
+            }
+            const outgoing = db.getOutgoingLinks(sym.id).filter(l => l.type !== 'contains');
+            if (outgoing.length > 0) {
+                lines.push(`outgoing (${outgoing.length}):`);
+                for (const l of outgoing) {
+                    const to = db.findSymbolById(l.toId);
+                    lines.push(`  ${l.type}: ${to ? fmtSymbol(to) : l.toId}`);
+                }
+            }
+            lines.push('');
+        }
+        return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: lines.join('\n') }] };
+    });
+    server.resource('file-symbols', new Rt('milens://file/{+path}', { list: undefined }), { description: 'All symbols in a file with ref/dep counts' }, async (uri, { path }) => {
+        const { db } = getDb();
+        const filePath = decodeURIComponent(path);
+        const symbols = db.getSymbolsByFile(filePath);
+        if (symbols.length === 0) {
+            return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: `No symbols in "${filePath}".` }] };
+        }
+        const lines = [`${filePath}: ${symbols.length} symbols\n`];
+        for (const sym of symbols) {
+            const incoming = db.getIncomingLinks(sym.id).filter(l => l.type !== 'contains');
+            const outgoing = db.getOutgoingLinks(sym.id).filter(l => l.type !== 'contains');
+            const exp = sym.exported ? ' (exported)' : '';
+            lines.push(`${fmtSymbol(sym, 'L2')}${exp} ← ${incoming.length} refs, → ${outgoing.length} deps`);
+        }
+        return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: lines.join('\n') }] };
+    });
+    server.resource('domain', new Rt('milens://domain/{name}', { list: undefined }), { description: 'Domain cluster details: files and top symbols in a domain' }, async (uri, { name }) => {
+        const { db } = getDb();
+        const domainName = name;
+        const allFiles = db.db_getFilesByZone(domainName);
+        if (allFiles.length === 0) {
+            return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: `Domain "${domainName}" not found.` }] };
+        }
+        const lines = [`domain: ${domainName} (${allFiles.length} files)\n`];
+        let totalSymbols = 0;
+        for (const file of allFiles) {
+            const syms = db.getSymbolsByFile(file);
+            totalSymbols += syms.length;
+            const exported = syms.filter(s => s.exported);
+            lines.push(`${file}: ${syms.length} symbols (${exported.length} exported)`);
+        }
+        lines.push(`\ntotal: ${totalSymbols} symbols in ${allFiles.length} files`);
+        return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: lines.join('\n') }] };
+    });
+    server.resource('overview', 'milens://overview', { description: 'Index overview: stats, domains, unresolved, test coverage, staleness' }, async (uri) => {
+        const { db, root, lazy } = getDb();
+        const stats = lazy.getCachedStats();
+        const unresolved = db.getUnresolvedStats();
+        const coverage = db.getTestCoverage();
+        const domains = lazy.getCachedDomainStats();
+        const staleFiles = db.getStaleFiles(24);
+        const lines = [
+            `repo: ${root}`,
+            `symbols: ${stats.symbols}`,
+            `links: ${stats.links}`,
+            `files: ${stats.files}`,
+        ];
+        if (unresolved.imports > 0 || unresolved.calls > 0) {
+            lines.push(`⚠ unresolved (internal): ${unresolved.imports} imports, ${unresolved.calls} calls`);
+        }
+        if (unresolved.externalImports > 0 || unresolved.externalCalls > 0) {
+            lines.push(`external (expected): ${unresolved.externalImports} imports, ${unresolved.externalCalls} calls`);
+        }
+        if (coverage.testFiles > 0) {
+            const pct = coverage.exportedProductionSymbols > 0
+                ? Math.round(coverage.testedSymbols / coverage.exportedProductionSymbols * 100) : 0;
+            lines.push(`test coverage: ${coverage.testedSymbols}/${coverage.exportedProductionSymbols} (${pct}%) from ${coverage.testFiles} test files`);
+        }
+        if (domains.length > 0) {
+            lines.push(`\ndomains (${domains.length}):`);
+            for (const d of domains) {
+                lines.push(`  ${d.domain}: ${d.files} files, ${d.symbols} symbols`);
+            }
+        }
+        if (staleFiles.length > 0) {
+            lines.push(`\n⏳ ${staleFiles.length} stale files (>24h)`);
+        }
+        return { contents: [{ uri: uri.href, mimeType: 'text/plain', text: lines.join('\n') }] };
+    });
+}
+//# sourceMappingURL=resources.js.map

package/dist/server/tools/resources.js.map

@@ -0,0 +1 @@
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package/dist/server/tools/security.d.ts

@@ -0,0 +1,3 @@
+import type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import type { Deps } from './deps.js';
+export declare function registerSecurityTools(server: McpServer, deps: Deps): void;

package/dist/server/tools/security.js

@@ -0,0 +1,176 @@
+import { z } from 'zod';
+import { resolve, relative, join, sep } from 'node:path';
+import { readFileSync, existsSync, mkdirSync, writeFileSync } from 'node:fs';
+import { loadRules } from '../../security/rules.js';
+import { globToRegex } from '../../utils.js';
+/** Resolve `file` under `root` and reject any path that escapes it (path traversal / symlink). */
+function resolveInsideRoot(root, file) {
+    const resolvedRoot = resolve(root);
+    const fullPath = resolve(resolvedRoot, file);
+    if (fullPath !== resolvedRoot && !fullPath.startsWith(resolvedRoot + sep))
+        return null;
+    return fullPath;
+}
+export function registerSecurityTools(server, deps) {
+    const { getDb } = deps;
+    server.tool('security_scan', 'Scan codebase for security vulnerabilities using 190+ built-in rules across 25 categories. Replaces multiple manual grep() calls. Categories: secrets, injection, rce, xss, deserialization, ssrf, xxe, path-traversal, file-upload, unicode, dangerous, config, data-leak, crypto, auth, jwt, cors-headers, dependency, cloud, docker, kubernetes, iac, business-logic, api-security, misc, file-access.', {
+        scope: z.enum(['all', 'secrets', 'injection', 'rce', 'xss', 'deserialization', 'ssrf', 'xxe', 'path-traversal', 'file-upload', 'unicode', 'dangerous', 'config', 'data-leak', 'crypto', 'auth', 'jwt', 'cors-headers', 'dependency', 'cloud', 'docker', 'kubernetes', 'iac', 'business-logic', 'api-security', 'misc', 'file-access']).optional().default('all').describe('Scan scope'),
+        repo: z.string().optional().describe('Repository root path'),
+        severity: z.enum(['CRITICAL', 'HIGH', 'MEDIUM', 'LOW']).optional().describe('Minimum severity filter'),
+        limit: z.number().optional().default(50).describe('Max findings'),
+    }, async ({ scope, repo, severity, limit }) => {
+        const { db, root } = getDb(repo);
+        const rules = loadRules();
+        // Filter rules by scope and severity
+        const filtered = rules.filter(r => {
+            if (scope !== 'all' && r.category !== scope)
+                return false;
+            if (severity) {
+                const sevOrder = { CRITICAL: 4, HIGH: 3, MEDIUM: 2, LOW: 1 };
+                if ((sevOrder[r.severity] || 0) < (sevOrder[severity] || 0))
+                    return false;
+            }
+            return r.enabled;
+        });
+        // Get all source files from the DB
+        const symbols = db.getAllSymbols();
+        const fileSet = new Set();
+        for (const s of symbols) {
+            if (s.filePath && !s.filePath.includes('node_modules') && !s.filePath.includes('.git')) {
+                fileSet.add(s.filePath);
+            }
+        }
+        const files = [...fileSet].slice(0, 1000); // cap at 1000 files
+        const { readFileSync: rfs, existsSync: es } = await import('node:fs');
+        const { resolve: resolvePath } = await import('node:path');
+        const findings = [];
+        const byCategory = {};
+        const bySeverity = { CRITICAL: 0, HIGH: 0, MEDIUM: 0, LOW: 0 };
+        for (const file of files) {
+            const fullPath = resolvePath(root, file);
+            if (!es(fullPath))
+                continue;
+            // Apply excludeGlob from each rule's exclusion pattern
+            let shouldExclude = false;
+            for (const rule of filtered) {
+                if (rule.excludeGlob) {
+                    const excludePatterns = rule.excludeGlob.split(',');
+                    for (const pattern of excludePatterns) {
+                        const regex = globToRegex(pattern.trim());
+                        if (regex.test(file) || regex.test('/' + file)) {
+                            shouldExclude = true;
+                            break;
+                        }
+                    }
+                }
+                if (shouldExclude)
+                    break;
+            }
+            if (shouldExclude)
+                continue;
+            // Skip files that don't match rule fileGlobs (simple check)
+            const applicableRules = filtered.filter(r => {
+                if (!r.fileGlob)
+                    return true;
+                // Simple glob: just check extension
+                const ext = r.fileGlob.replace('**/*.', '').replace('**/*', '');
+                return file.endsWith(ext) || r.fileGlob === '**/*';
+            });
+            if (applicableRules.length === 0)
+                continue;
+            try {
+                const content = rfs(fullPath, 'utf-8');
+                const lines = content.split('\n');
+                for (const rule of applicableRules) {
+                    for (const pattern of rule.patterns) {
+                        let match;
+                        // Reset regex lastIndex for global patterns
+                        pattern.lastIndex = 0;
+                        while ((match = pattern.exec(content)) !== null) {
+                            const lineNum = content.substring(0, match.index).split('\n').length;
+                            const ctxStart = Math.max(0, lineNum - 3);
+                            const ctxEnd = Math.min(lines.length, lineNum + 2);
+                            const context = lines.slice(ctxStart, ctxEnd).join('\n');
+                            findings.push({
+                                ruleId: rule.id,
+                                category: rule.category,
+                                severity: rule.severity,
+                                owasp: rule.owasp,
+                                file,
+                                line: lineNum,
+                                match: match[0].length > 100 ? match[0].slice(0, 97) + '...' : match[0],
+                                context,
+                                fix: rule.fix,
+                            });
+                            byCategory[rule.category] = (byCategory[rule.category] || 0) + 1;
+                            bySeverity[rule.severity] = (bySeverity[rule.severity] || 0) + 1;
+                        }
+                    }
+                }
+            }
+            catch {
+                // Skip unreadable files
+            }
+        }
+        // Calculate security score (100 - deductions)
+        const deduction = findings.filter((f) => f.severity === 'CRITICAL').length * 5 +
+            findings.filter((f) => f.severity === 'HIGH').length * 2 +
+            findings.filter((f) => f.severity === 'MEDIUM').length * 0.5;
+        const score = Math.max(0, Math.round(100 - deduction));
+        const limited = findings.slice(0, limit);
+        return {
+            content: [{
+                    type: 'text',
+                    text: JSON.stringify({
+                        summary: {
+                            totalScanned: files.length,
+                            findings: findings.length,
+                            byCategory,
+                            bySeverity,
+                            score,
+                        },
+                        findings: limited,
+                    }, null, 2),
+                }],
+        };
+    });
+    server.tool('fix_apply', 'Apply a security fix suggestion to a file. Creates a backup before modifying. CRITICAL rules require confirm: true.', {
+        ruleId: z.string().describe('Security rule ID (e.g. "hardcoded_secret")'),
+        file: z.string().describe('File path relative to repo root'),
+        line: z.number().describe('Line number where the issue was found'),
+        confirm: z.boolean().optional().default(false).describe('Confirmation required for CRITICAL rules'),
+        repo: z.string().optional(),
+    }, async ({ ruleId, file, line, confirm, repo }) => {
+        const { root } = getDb(repo);
+        const rules = loadRules();
+        const rule = rules.find(r => r.id === ruleId);
+        if (!rule)
+            return { content: [{ type: 'text', text: `Rule not found: "${ruleId}"` }] };
+        if (rule.severity === 'CRITICAL' && !confirm) {
+            return { content: [{ type: 'text', text: `CRITICAL rule "${ruleId}" requires confirmation. Set confirm: true to proceed.` }] };
+        }
+        const fullPath = resolveInsideRoot(root, file);
+        if (!fullPath)
+            return { content: [{ type: 'text', text: `Invalid file path: "${file}" resolves outside the repo root.` }] };
+        if (!existsSync(fullPath))
+            return { content: [{ type: 'text', text: `File not found: ${file}` }] };
+        const content = readFileSync(fullPath, 'utf-8');
+        const lines = content.split('\n');
+        if (line < 1 || line > lines.length)
+            return { content: [{ type: 'text', text: `Line ${line} out of range (file has ${lines.length} lines).` }] };
+        // Backup original
+        const backupDir = join(root, '.milens', 'backups');
+        mkdirSync(backupDir, { recursive: true });
+        const backupPath = join(backupDir, `${file.replace(/[\\/]/g, '_')}_${Date.now()}.bak`);
+        writeFileSync(backupPath, content, 'utf-8');
+        // Apply fix: add comment above the affected line with the fix suggestion
+        const targetLine = lines[line - 1];
+        const indent = targetLine.match(/^(\s*)/)?.[1] ?? '';
+        const fixComment = `${indent}// milens(fix): rule=${rule.id} — ${rule.fix ?? 'Review manually'}`;
+        lines.splice(line - 1, 0, fixComment);
+        const newContent = lines.join('\n');
+        writeFileSync(fullPath, newContent, 'utf-8');
+        return { content: [{ type: 'text', text: `Fix applied for rule "${ruleId}" at ${file}:${line}\nSeverity: ${rule.severity}\nBackup: ${relative(root, backupPath)}\nFix: ${rule.fix ?? 'Manual review needed'}\n\nAdded fix comment above line ${line}.` }] };
+    });
+}
+//# sourceMappingURL=security.js.map

package/dist/server/tools/security.js.map

@@ -0,0 +1 @@
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package/dist/server/tools/session.d.ts

@@ -0,0 +1,3 @@
+import type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import type { Deps } from './deps.js';
+export declare function registerSessionTools(server: McpServer, deps: Deps): void;

package/dist/server/tools/session.js

@@ -0,0 +1,140 @@
+import { z } from 'zod';
+import { AnnotationStore } from '../../store/annotations.js';
+import { HookManager, defaultOnSessionStart, defaultOnSessionEnd, defaultOnPreCommit, defaultOnFileChange, defaultOnPreCompact, defaultOnPostCompact, } from '../hooks.js';
+import { BUILD_SHA, BUILT_AT } from '../../build-info.js';
+export function registerSessionTools(server, deps) {
+    const { getDb, guard, getToolCallCount } = deps;
+    server.tool('annotate', 'Record a note about a symbol for future sessions. Use after discovering bugs, patterns, or important caveats.', {
+        symbol: z.string(),
+        key: z.enum(['note', 'bug', 'security', 'architecture', 'workflow', 'test', 'dependency', 'refactor']),
+        value: z.string(),
+        agent: z.string().optional(),
+        session_id: z.string().optional(),
+        confidence: z.number().optional().default(0.5),
+    }, async ({ symbol, key, value, agent, session_id, confidence }) => {
+        const { db } = getDb();
+        const store = new AnnotationStore(db.connection);
+        const ann = store.annotate(symbol, key, value, { agent, sessionId: session_id });
+        return { content: [{ type: 'text', text: `Annotation saved: ${ann.id}\n  symbol: ${ann.symbol}\n  key: ${ann.key}\n  confidence: ${ann.confidence}` }] };
+    });
+    server.tool('recall', 'Retrieve annotations saved in previous sessions. Filter by symbol, key, or agent.', {
+        symbol: z.string().optional(), key: z.enum(['note', 'bug', 'security', 'architecture', 'workflow', 'test', 'dependency', 'refactor']).optional(),
+        agent: z.string().optional(), limit: z.number().optional().default(50),
+    }, async ({ symbol, key, agent, limit }) => {
+        const { db } = getDb();
+        const store = new AnnotationStore(db.connection);
+        const results = store.recall({ symbol, key, agent, limit });
+        if (results.length === 0)
+            return { content: [{ type: 'text', text: 'No annotations found.' }] };
+        const lines = [`${results.length} annotation(s):\n`];
+        for (const a of results) {
+            lines.push(`[${a.key}] ${a.symbol} — ${a.value.slice(0, 120)}`);
+            lines.push(`  confidence: ${a.confidence.toFixed(1)} | agent: ${a.agent ?? '?'} | ${a.updatedAt}\n`);
+        }
+        return { content: [{ type: 'text', text: lines.join('\n') }] };
+    });
+    server.tool('session_start', 'Start a new session. Returns a session ID to use with annotate, session_end, and handoff.', { agent: z.string().describe('Agent name (e.g. vibe-coder, reviewer)') }, async ({ agent }) => {
+        const { db, root, dbPath } = getDb();
+        const store = new AnnotationStore(db.connection);
+        const sessionId = store.sessionStart(agent);
+        let hookOutput = '';
+        try {
+            const manager = new HookManager();
+            const config = manager.loadConfig(root);
+            if (config.enabled && config.onSessionStart) {
+                hookOutput = await defaultOnSessionStart({ agent, sessionId, rootPath: root }, dbPath);
+            }
+        }
+        catch { /* hooks are best-effort */ }
+        const text = `Session started: ${sessionId}\nAgent: ${agent}\nBuild: ${BUILD_SHA} (${BUILT_AT})\nUse this ID with annotate() and session_end().`;
+        return { content: [{ type: 'text', text: hookOutput ? `${hookOutput}\n\n${text}` : text }] };
+    });
+    server.tool('session_context', 'Get metadata about a session: annotations, tool calls, duration.', { session_id: z.string() }, async ({ session_id }) => {
+        const { db, root } = getDb();
+        const store = new AnnotationStore(db.connection);
+        const ctx = store.sessionContext(session_id);
+        if (!ctx.session)
+            return { content: [{ type: 'text', text: `Session "${session_id}" not found.` }] };
+        const s = ctx.session;
+        const liveCalls = getToolCallCount(root);
+        const displayCalls = s.toolCallsCount > 0 ? s.toolCallsCount : liveCalls;
+        const lines = [
+            `Session: ${s.id}`,
+            `Agent: ${s.agent} | Status: ${s.status}`,
+            `Started: ${s.startedAt} | Ended: ${s.endedAt ?? 'in progress'}`,
+            `Tool calls: ${displayCalls}${s.toolCallsCount === 0 ? ' (live count, resets on restart)' : ''} | Annotations: ${s.annotationsCount}`,
+        ];
+        if (s.context)
+            lines.push(`Context: ${s.context}`);
+        if (ctx.annotations.length > 0) {
+            lines.push(`\nAnnotations (${ctx.annotations.length}):`);
+            for (const a of ctx.annotations) {
+                lines.push(`  [${a.key}] ${a.symbol}: ${a.value.slice(0, 80)}`);
+            }
+        }
+        return { content: [{ type: 'text', text: lines.join('\n') }] };
+    });
+    server.tool('session_end', 'End a session and record its stats. Shows audit trail: which symbols were safety-checked vs total edit operations. Use at the end of every session.', { session_id: z.string(), status: z.enum(['completed', 'failed']).optional().default('completed') }, async ({ session_id, status }) => {
+        const { db, root, dbPath } = getDb();
+        const store = new AnnotationStore(db.connection);
+        const summary = store.sessionEnd(session_id, status);
+        // Audit trail from SessionGuard
+        const audit = guard.getAudit(session_id);
+        guard.clear(session_id);
+        let hookOutput = '';
+        try {
+            const ctx = store.sessionContext(session_id);
+            const manager = new HookManager();
+            const config = manager.loadConfig(root);
+            if (config.enabled && config.onSessionEnd) {
+                hookOutput = await defaultOnSessionEnd({ agent: ctx.session.agent, sessionId: session_id, rootPath: root }, dbPath);
+            }
+        }
+        catch { /* hooks are best-effort */ }
+        const lines = [
+            `Session ended: ${session_id}`,
+            `Status: ${status}`,
+            `Annotations: ${summary.annotationCount}`,
+            `───`,
+            `Audit Trail:`,
+            `  safety checks performed: ${audit.checked.length}`,
+            audit.checked.length > 0 ? `  symbols checked: ${audit.checked.join(', ')}` : '  ⚠ no symbols were checked via guard_edit_check',
+            audit.editOps > 0 ? `  edit operations reported: ${audit.editOps}` : null,
+        ].filter(Boolean);
+        const text = lines.join('\n');
+        return { content: [{ type: 'text', text: hookOutput ? `${text}\n\n${hookOutput}` : text }] };
+    });
+    server.tool('handoff', 'Transfer context from one agent session to another. Ends the source session and creates a new one for the target agent.', {
+        from_session: z.string(), to_agent: z.string(),
+        context: z.string().describe('Summary of what was done, key decisions, and caveats for the next agent'),
+    }, async ({ from_session, to_agent, context }) => {
+        const { db } = getDb();
+        const store = new AnnotationStore(db.connection);
+        const result = store.handoff(from_session, to_agent, context);
+        return { content: [{ type: 'text', text: `Handoff complete.\nNew session: ${result.newSessionId}\nAgent: ${to_agent}\nAnnotations copied: ${result.annotationsCopied}` }] };
+    });
+    server.tool('pre_commit_check', 'Run pre-commit risk analysis: detect_changes + review_pr + dead code + coverage gaps. Use before committing.', { repo: z.string().optional().describe('Repository root path') }, async ({ repo }) => {
+        const { root } = getDb(repo);
+        const report = await defaultOnPreCommit(root);
+        return { content: [{ type: 'text', text: report }] };
+    });
+    server.tool('hook_onFileChange', 'Trigger the onFileChange hook. Call this when files are modified to get impact summary.', {
+        files: z.array(z.string()).describe('List of changed file paths'),
+        repo: z.string().optional(),
+    }, async ({ files, repo }) => {
+        const { root } = getDb(repo);
+        const report = await defaultOnFileChange(files, root);
+        return { content: [{ type: 'text', text: report }] };
+    });
+    server.tool('hook_preCompact', 'Trigger pre-compaction hook. Saves a metrics snapshot before context window compaction.', { repo: z.string().optional() }, async ({ repo }) => {
+        const { root, dbPath } = getDb(repo);
+        const report = await defaultOnPreCompact(root, dbPath);
+        return { content: [{ type: 'text', text: report }] };
+    });
+    server.tool('hook_postCompact', 'Trigger post-compaction hook. Recalls annotations to restore context after compaction.', { repo: z.string().optional() }, async ({ repo }) => {
+        const { root } = getDb(repo);
+        const report = await defaultOnPostCompact(root);
+        return { content: [{ type: 'text', text: report }] };
+    });
+}
+//# sourceMappingURL=session.js.map

package/dist/server/tools/session.js.map

@@ -0,0 +1 @@
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package/dist/server/tools/testing.d.ts

@@ -0,0 +1,3 @@
+import type { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import type { Deps } from './deps.js';
+export declare function registerTestingTools(server: McpServer, deps: Deps): void;