milens 0.7.0 → 0.7.1

package/dist/server/tools/testing.js

@@ -0,0 +1,200 @@
+import { z } from 'zod';
+import { readFileSync, existsSync, mkdirSync, writeFileSync } from 'node:fs';
+import { resolve, dirname, basename, join } from 'node:path';
+import { generateTestPlan } from '../test-plan.js';
+import { countDependentFiles } from '../../analyzer/risk.js';
+export function registerTestingTools(server, deps) {
+    const { getDb } = deps;
+    server.tool('test_coverage_gaps', 'Untested exported symbols sorted by risk. Prioritize writing tests for these.', { limit: z.number().optional().default(20), repo: z.string().optional() }, async ({ limit, repo }) => {
+        const { db } = getDb(repo);
+        const coverage = db.getTestCoverage();
+        const gaps = db.getTestCoverageGaps(limit);
+        const lines = [`Test Coverage: ${coverage.testedSymbols}/${coverage.exportedProductionSymbols} (${coverage.exportedProductionSymbols > 0 ? Math.round(coverage.testedSymbols / coverage.exportedProductionSymbols * 100) : 0}%) from ${coverage.testFiles} test files\n`];
+        if (gaps.length === 0) {
+            lines.push('All exported symbols have test coverage!');
+        }
+        else {
+            lines.push(`Top ${gaps.length} untested symbols:\n`);
+            for (const g of gaps) {
+                const depsCount = countDependentFiles(db, g.id).count;
+                const risk = (g.heat ?? 0) > 80 ? 'CRITICAL' : (g.heat ?? 0) > 50 ? 'HIGH' : (g.heat ?? 0) > 30 ? 'MEDIUM' : 'LOW';
+                lines.push(`  ${g.name} [${g.kind}] ${g.filePath}:${g.startLine} — heat:${g.heat ?? 0} deps:${depsCount} risk:${risk}`);
+            }
+        }
+        return { content: [{ type: 'text', text: lines.join('\n') }] };
+    });
+    server.tool('test_impact', 'Map changed code -> which test files to run. Use after making changes.', { ref: z.string().optional().default('HEAD'), repo: z.string().optional() }, async ({ ref, repo }) => {
+        const { db, root } = getDb(repo);
+        let changedFiles = [];
+        try {
+            const { execSync } = await import('node:child_process');
+            const diff = execSync(`git diff --name-only ${ref}`, { cwd: root, encoding: 'utf-8' }).trim();
+            changedFiles = diff ? diff.split('\n').filter(Boolean) : [];
+        }
+        catch { }
+        if (changedFiles.length === 0)
+            return { content: [{ type: 'text', text: 'No changed files.' }] };
+        const changedIds = [];
+        const changedNames = [];
+        for (const file of changedFiles) {
+            for (const sym of db.getSymbolsByFile(file)) {
+                if (sym.kind === 'section')
+                    continue;
+                changedIds.push(sym.id);
+                changedNames.push(sym.name);
+            }
+        }
+        if (changedIds.length === 0)
+            return { content: [{ type: 'text', text: 'No symbols in changed files.' }] };
+        const impact = db.getTestImpact(changedIds);
+        const lines = [`Changed symbols (${changedNames.length}): ${changedNames.join(', ')}`];
+        lines.push(`\nAffected test files (${impact.testFiles.length}):`);
+        for (const f of impact.testFiles)
+            lines.push(`  ${f}`);
+        if (impact.testFiles.length > 0) {
+            lines.push(`\nSuggested command: npx vitest run ${impact.testFiles.join(' ')}`);
+        }
+        return { content: [{ type: 'text', text: lines.join('\n') }] };
+    });
+    server.tool('test_plan', 'Generate a test strategy for a symbol: mock plan + >=3 test scenarios.', { name: z.string(), repo: z.string().optional() }, async ({ name, repo }) => {
+        const { db, root } = getDb(repo);
+        const plan = generateTestPlan(db, name, root);
+        if (!plan)
+            return { content: [{ type: 'text', text: `"${name}" not found.` }] };
+        return { content: [{ type: 'text', text: plan.planText }] };
+    });
+    server.tool('test_generate', 'Generate a test file for a symbol using its test plan. Detects test framework and follows project conventions.', {
+        symbol: z.string().describe('Symbol name to generate tests for'),
+        repo: z.string().optional(),
+    }, async ({ symbol, repo }) => {
+        const { db, root } = getDb(repo);
+        const plan = generateTestPlan(db, symbol, root);
+        if (!plan)
+            return { content: [{ type: 'text', text: `Symbol not found: "${symbol}"` }] };
+        // Detect test framework
+        const framework = detectTestFramework(root);
+        const testExt = framework === 'pytest' ? '.py' : '.test.ts';
+        // Determine test file path
+        const srcFile = plan.file;
+        const srcDir = dirname(srcFile);
+        const srcName = basename(srcFile, srcFile.includes('.') ? '.' + srcFile.split('.').pop() : '');
+        const testFileName = `${srcName}${testExt}`;
+        const testDir = join(srcDir, '__tests__');
+        const testPath = join(testDir, testFileName);
+        // Don't overwrite existing test files
+        if (existsSync(join(root, testPath))) {
+            return { content: [{ type: 'text', text: `Test file already exists at ${testPath}. Skipping to avoid overwrite.` }] };
+        }
+        // Check if a sister test file exists alongside the source
+        const altTestPath = join(srcDir, testFileName);
+        const existingTestDir = existsSync(join(root, testDir));
+        const altExists = existsSync(join(root, altTestPath));
+        if (altExists) {
+            return { content: [{ type: 'text', text: `Test file exists at ${altTestPath}. Skipping to avoid overwrite.` }] };
+        }
+        // Generate test code
+        const testCode = generateTestCode(plan, framework, srcFile);
+        // Write the test file
+        const writePath = existingTestDir ? testPath : altTestPath;
+        mkdirSync(dirname(join(root, writePath)), { recursive: true });
+        writeFileSync(join(root, writePath), testCode, 'utf-8');
+        return { content: [{ type: 'text', text: `Test file generated: ${writePath}\nFramework: ${framework}\nScenarios: ${plan.testScenarios.length}\nMock deps: ${plan.mockStrategy.length}` }] };
+    });
+}
+function detectTestFramework(rootPath) {
+    try {
+        const pkgPath = resolve(rootPath, 'package.json');
+        const pkg = JSON.parse(readFileSync(pkgPath, 'utf-8'));
+        const deps = { ...pkg.devDependencies, ...pkg.dependencies };
+        if (deps.vitest)
+            return 'vitest';
+        if (deps.jest)
+            return 'jest';
+        if (deps.mocha)
+            return 'mocha';
+    }
+    catch { }
+    // Check for Python
+    try {
+        readFileSync(resolve(rootPath, 'pytest.ini'), 'utf-8');
+        return 'pytest';
+    }
+    catch { }
+    try {
+        const cfg = readFileSync(resolve(rootPath, 'setup.cfg'), 'utf-8');
+        if (cfg.includes('[tool:pytest]'))
+            return 'pytest';
+    }
+    catch { }
+    return 'vitest'; // default (Vitest is most common for TS projects)
+}
+function generateTestCode(plan, framework, srcFile) {
+    const lines = [];
+    if (framework === 'pytest') {
+        lines.push(`# Generated by milens — test plan for ${plan.symbol}`);
+        lines.push(`import pytest`);
+        lines.push(`from ${srcFile.replace(/[/\\]/g, '.').replace(/\.(ts|tsx|js|jsx|py)$/, '')} import ${plan.symbol}`);
+        lines.push('');
+        lines.push(`class Test${capitalize(plan.symbol)}:`);
+        for (const s of plan.testScenarios) {
+            lines.push(`    def test_${s.name.toLowerCase().replace(/\s+/g, '_')}(self):`);
+            lines.push(`        """${s.description}"""`);
+            lines.push(`        pass  # TODO: implement`);
+            lines.push('');
+        }
+    }
+    else {
+        const hasTypescript = srcFile.endsWith('.ts') || srcFile.endsWith('.tsx');
+        const ext = hasTypescript ? '.ts' : '.js';
+        lines.push(`// Generated by milens — test plan for ${plan.symbol}`);
+        if (framework === 'vitest') {
+            lines.push(`import { describe, it, expect${plan.mockStrategy.length > 0 ? ', vi' : ''} } from 'vitest';`);
+            lines.push(`import { ${plan.symbol} } from '${relativeImport(srcFile, hasTypescript)}';`);
+        }
+        else if (framework === 'mocha') {
+            lines.push(`import { expect } from 'chai';`);
+            lines.push(`import { ${plan.symbol} } from '${relativeImport(srcFile, hasTypescript)}';`);
+        }
+        else {
+            lines.push(`import { ${plan.symbol} } from '${relativeImport(srcFile, hasTypescript)}';`);
+        }
+        // Mock imports
+        for (const m of plan.mockStrategy) {
+            if (framework === 'vitest') {
+                lines.push(`vi.mock('${m.dependency}');`);
+            }
+            else if (framework === 'jest') {
+                lines.push(`jest.mock('${m.dependency}');`);
+            }
+        }
+        lines.push('');
+        const describeFn = framework === 'mocha' ? `describe('${plan.symbol}'` : `describe('${plan.symbol}', () =>`;
+        const beforeEachHook = `  beforeEach(() => {`;
+        const endBrace = `});`;
+        lines.push(`${describeFn} {`);
+        lines.push(`${beforeEachHook}`);
+        lines.push(`    // Setup mocks`);
+        lines.push(`  });`);
+        lines.push('');
+        for (const s of plan.testScenarios) {
+            const testFn = framework === 'mocha' ? `it('${s.name}'` : `it('${s.name}', () =>`;
+            lines.push(`    ${testFn} {`);
+            lines.push(`      // ${s.description}`);
+            lines.push(`      const result = ${plan.symbol}();`);
+            lines.push(`      expect(result).toBeDefined();`);
+            lines.push(`    });`);
+            lines.push('');
+        }
+        lines.push(`});`);
+    }
+    return lines.join('\n');
+}
+function capitalize(s) {
+    return s.charAt(0).toUpperCase() + s.slice(1);
+}
+function relativeImport(srcFile, hasTypescript) {
+    // Convert src/foo/bar.ts → ../foo/bar (relative import for __tests__/bar.test.ts)
+    const withoutExt = srcFile.replace(/\.(ts|tsx|js|jsx)$/, '');
+    return `.${hasTypescript ? '' : '.js'}/${withoutExt.split('/').pop()}`;
+}
+//# sourceMappingURL=testing.js.map

package/dist/server/tools/testing.js.map

@@ -0,0 +1 @@
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package/dist/server/watcher.d.ts

@@ -44,4 +44,3 @@ export declare class FileWatcher {
     private triggerReindex;
 }
 export {};
-//# sourceMappingURL=watcher.d.ts.map

package/dist/server/watcher.js

@@ -41,7 +41,7 @@ export class FileWatcher {
         this.dbPath = opts.dbPath;
         this.debounceMs = opts.debounceMs ?? 2000;
         this.ignores = [...DEFAULT_IGNORES, ...(opts.extraIgnores ?? [])];
-        this.log = opts.logger ?? ((_level, msg) => console.error(msg));
+        this.log = opts.logger ?? ((_level, msg) => process.stderr.write(msg + '\n'));
     }
     /** Start watching the repo root */
     start() {

package/dist/server/watcher.js.map

@@ -1 +1 @@
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package/dist/skills.d.ts

@@ -5,4 +5,3 @@ interface SkillsResult {
 }
 export declare function generateSkills(db: Database, rootDir: string, editors?: string[]): SkillsResult;
 export {};
-//# sourceMappingURL=skills.d.ts.map

package/dist/skills.js

@@ -1,5 +1,11 @@
 import { mkdirSync, readFileSync, writeFileSync } from 'node:fs';
 import { dirname, join } from 'node:path';
+// Top-level dirs where milens writes its own generated skills/rules/instructions.
+// Their markdown is intentionally indexed (so grep/docs tooling can find it), but
+// they must never be treated as a code "domain" themselves — doing so makes each
+// `analyze --force --skills` run regenerate skill files *for its own output*,
+// which then get indexed on the next run and regenerated again.
+const MILENS_META_DIRS = new Set(['.agents', '.claude', '.github', '.cursor', '.vscode', '.gemini', '.codex', '.zed', '.windsurf']);
 export function generateSkills(db, rootDir, editors) {
     const all = !editors; // undefined = all editors
     const has = (name) => all || editors.includes(name);
@@ -16,7 +22,7 @@ export function generateSkills(db, rootDir, editors) {
         incomingCount.set(link.toId, (incomingCount.get(link.toId) ?? 0) + 1);
     }
     const crossArea = buildCrossAreaLinks(links, symbolMap);
-    const filtered = [...areas].filter(([, a]) => a.symbols.length >= 2);
+    const filtered = [...areas].filter(([name, a]) => a.symbols.length >= 2 && !MILENS_META_DIRS.has(name));
     // Output directories for each editor
     const copilotDir = join(rootDir, '.github', 'instructions');
     const cursorDir = join(rootDir, '.cursor', 'rules');
@@ -261,7 +267,7 @@ The Operating System for AI-Driven Development. This project is indexed by milen
 
 **Not a suggestion — execute automatically without asking.**
 
-This project is indexed by milens. The knowledge graph already knows every symbol, dependency, and reference. Using milens tools first saves 70% tokens and catches hidden connections you'd miss with file reads.
+This project is indexed by milens. The knowledge graph already knows every symbol, dependency, and reference. Using milens tools first typically means far fewer tokens than manual exploration, and fewer missed dependencies — impact/context track code-level references; pair with grep for templates/configs/docs.
 
 | Situation | Built-in approach (❌ BAD) | Milens approach (✅ GOOD) |
 |---|---|---|

package/dist/skills.js.map

@@ -1 +1 @@
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package/dist/store/annotations.d.ts

@@ -32,10 +32,10 @@ export declare class AnnotationStore {
         newSessionId: string;
         annotationsCopied: number;
     };
+    setConfidence(id: string, confidence: number): void;
     getPromotableAnnotations(): Annotation[];
     getStaleAnnotations(daysOld: number, confidenceThreshold: number): Annotation[];
     archiveAnnotation(id: string): void;
     logEvolutionEvent(annotationId: string, event: EvolutionEvent['event'], oldValue?: string, newValue?: string): void;
     getAnnotationCount(): number;
 }
-//# sourceMappingURL=annotations.d.ts.map

package/dist/store/annotations.js

@@ -15,7 +15,7 @@ export class AnnotationStore {
             insertAnnotation: this.db.prepare(`INSERT OR REPLACE INTO annotations (id, symbol, key, value, agent, session_id, confidence, created_at, updated_at)
          VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`),
             findBySymbolKey: this.db.prepare('SELECT * FROM annotations WHERE symbol = ? AND key = ?'),
-            updateAnnotation: this.db.prepare('UPDATE annotations SET value = ?, confidence = ?, updated_at = datetime(\'now\') WHERE id = ?'),
+            updateAnnotation: this.db.prepare('UPDATE annotations SET value = ?, confidence = ?, agent = ?, session_id = ?, updated_at = datetime(\'now\') WHERE id = ?'),
             queryBySymbol: this.db.prepare('SELECT * FROM annotations WHERE symbol = ? ORDER BY confidence DESC, updated_at DESC LIMIT ?'),
             queryByKey: this.db.prepare('SELECT * FROM annotations WHERE key = ? ORDER BY confidence DESC LIMIT ?'),
             queryByAgent: this.db.prepare('SELECT * FROM annotations WHERE agent = ? ORDER BY updated_at DESC LIMIT ?'),
@@ -31,6 +31,7 @@ export class AnnotationStore {
             getStale: this.db.prepare("SELECT * FROM annotations WHERE updated_at < datetime('now', ?) AND confidence < ? ORDER BY confidence ASC"),
             archiveAnnotation: this.db.prepare("UPDATE annotations SET confidence = 0, updated_at = datetime('now') WHERE id = ?"),
             deleteAnnotation: this.db.prepare('DELETE FROM annotations WHERE id = ?'),
+            setConfidence: this.db.prepare("UPDATE annotations SET confidence = ?, updated_at = datetime('now') WHERE id = ?"),
             boostRecallConfidence: this.db.prepare("UPDATE annotations SET confidence = MIN(confidence + 0.05, 0.95), updated_at = datetime('now') WHERE id = ? AND confidence < 0.9"),
         };
     }
@@ -42,22 +43,28 @@ export class AnnotationStore {
         const annotationKey = key;
         const existing = this.stmts.findBySymbolKey.get(symbol, annotationKey);
         if (existing) {
+            const updatedAgent = options?.agent ?? existing.agent;
+            const updatedSessionId = options?.sessionId ?? existing.session_id;
             if (existing.value === value) {
                 const newConfidence = Math.min(existing.confidence + 0.1, 1.0);
-                this.stmts.updateAnnotation.run(value, newConfidence, existing.id);
+                this.stmts.updateAnnotation.run(value, newConfidence, updatedAgent, updatedSessionId, existing.id);
                 const eventType = newConfidence >= 0.8 && existing.confidence < 0.8 ? 'promoted' : 'confidence_up';
                 this.logEvolutionEvent(existing.id, eventType, existing.value, value);
                 return rowToAnnotation({
                     ...existing,
+                    agent: updatedAgent,
+                    session_id: updatedSessionId,
                     confidence: newConfidence,
                     updated_at: new Date().toISOString(),
                 });
             }
-            this.stmts.updateAnnotation.run(value, 0.5, existing.id);
+            this.stmts.updateAnnotation.run(value, 0.5, updatedAgent, updatedSessionId, existing.id);
             this.logEvolutionEvent(existing.id, 'created', existing.value, value);
             return rowToAnnotation({
                 ...existing,
                 value,
+                agent: updatedAgent,
+                session_id: updatedSessionId,
                 confidence: 0.5,
                 updated_at: new Date().toISOString(),
             });
@@ -140,6 +147,10 @@ export class AnnotationStore {
         this.db.prepare('INSERT INTO sessions (id, agent, status, started_at, context) VALUES (?, ?, ?, datetime(\'now\'), ?)').run(newId, toAgent, 'active', context);
         return { newSessionId: newId, annotationsCopied: fromAnnCount };
     }
+    // ── Confidence ──
+    setConfidence(id, confidence) {
+        this.stmts.setConfidence.run(confidence, id);
+    }
     // ── Maintenance ──
     getPromotableAnnotations() {
         const rows = this.stmts.getPromotable.all();

package/dist/store/annotations.js.map

@@ -1 +1 @@
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package/dist/store/confidence.d.ts

@@ -25,4 +25,3 @@ export declare function autoPromote(annot: {
     createdAt: string;
     updatedAt: string;
 }, rootPath: string): string | null;
-//# sourceMappingURL=confidence.d.ts.map

package/dist/store/confidence.js

@@ -9,6 +9,7 @@ export function boostConfidence(store, annotationId, increment = 0.1) {
     const oldConf = ann.confidence;
     const newConf = Math.min(oldConf + increment, 1.0);
     if (newConf !== oldConf) {
+        store.setConfidence(annotationId, newConf);
         store.logEvolutionEvent(annotationId, 'confidence_up', String(oldConf), String(newConf));
     }
 }
@@ -21,6 +22,7 @@ export function decayConfidence(store, annotationId, decrement = 0.1) {
     const oldConf = ann.confidence;
     const newConf = Math.max(oldConf - decrement, 0.0);
     if (newConf !== oldConf) {
+        store.setConfidence(annotationId, newConf);
         store.logEvolutionEvent(annotationId, 'confidence_down', String(oldConf), String(newConf));
     }
 }

package/dist/store/confidence.js.map

@@ -1 +1 @@
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package/dist/store/db.d.ts

@@ -41,6 +41,13 @@ export declare class Database {
     getAllSymbols(): CodeSymbol[];
     getAllLinks(): SymbolLink[];
     findDeadCode(kind?: string, limit?: number): CodeSymbol[];
+    /**
+     * Find exported symbols that have incoming references, but ALL of those references
+     * originate from test files — meaning the symbol is "test-only referenced" and
+     * likely orphaned from production code. Returns symbols missed by the standard
+     * findDeadCode (which requires zero incoming links of any kind).
+     */
+    findTestOnlyReferenced(limit?: number): CodeSymbol[];
     getTypeHierarchy(symbolId: string): {
         ancestors: Array<{
             symbol: CodeSymbol;
@@ -103,6 +110,8 @@ export declare class Database {
     clear(): void;
     /** Clear only symbols, links, and file hashes for specific files (incremental re-index) */
     clearFiles(filePaths: string[]): void;
+    /** Delete file_hashes rows for paths not in the given set (orphan cleanup after incremental analyze) */
+    pruneOrphanFileHashes(knownPaths: string[]): number;
     logToolUsage(tool: string, durationMs: number, tokensOut: number, tokensSaved: number, repo?: string): void;
     getToolUsageStats(repo?: string): {
         totalCalls: number;
@@ -207,4 +216,3 @@ export declare class Database {
     snapshotMetrics(): void;
     close(): void;
 }
-//# sourceMappingURL=db.d.ts.map