milens 0.7.0 → 0.7.1

package/.agents/skills/adapters/SKILL.md

@@ -1,51 +1,54 @@
----
-name: milens-adapters
-description: Code intelligence for the adapters area — symbols, dependencies, and entry points
----
-
-# Adapters
-
-## Working with this area
-When working with code in **adapters/**, follow these mandatory safety rules:
-
-### Before editing any symbol in this area:
-1. Call `mcp_milens_impact({target: "<symbol>", repo: "<workspaceRoot>"})` — check blast radius
-2. If depth-1 dependents > 5 → **STOP and warn** before proceeding
-3. Call `mcp_milens_context({name: "<symbol>", repo: "<workspaceRoot>"})` — see all callers/callees
-
-### Before committing changes in this area:
-1. Call `mcp_milens_detect_changes({repo: "<workspaceRoot>"})` — verify scope
-2. If unexpected files changed → **STOP and report**
-
-### Key tools for this area:
-| Task | Tool |
-|---|---|
-| Find all references | `mcp_milens_context` |
-| Check edit safety | `mcp_milens_edit_check` |
-| Text search across files | `mcp_milens_grep` |
-| See file symbols | `mcp_milens_get_file_symbols` |
-
-## Overview
-Contains 34 symbols (31 exported) across 3 files.
-
-## Key Symbols
-- **`Milens — Code Intelligence for Claude Code`** [section] (adapters/claude-code/CLAUDE.md:1) — 0 refs
-- **`⚠️ BEFORE ANYTHING ELSE`** [section] (adapters/claude-code/CLAUDE.md:3) — 0 refs
-- **`⭐ Core Tools (Use Every Session)`** [section] (adapters/claude-code/CLAUDE.md:19) — 0 refs
-- **`🔧 Situational Tools (Use When Needed)`** [section] (adapters/claude-code/CLAUDE.md:32) — 0 refs
-- **`Session Workflow`** [section] (adapters/claude-code/CLAUDE.md:46) — 0 refs
-- **`Edit Safety (Mandatory)`** [section] (adapters/claude-code/CLAUDE.md:54) — 0 refs
-- **`Tool Selection`** [section] (adapters/claude-code/CLAUDE.md:70) — 0 refs
-- **`Reference`** [section] (adapters/claude-code/CLAUDE.md:76) — 0 refs
-- **`Milens — Code Intelligence for OpenCode`** [section] (adapters/opencode/AGENTS.md:1) — 0 refs
-- **`⚠️ BEFORE ANYTHING ELSE`** [section] (adapters/opencode/AGENTS.md:3) — 0 refs
-- **`⭐ Core Tools (Use Every Session)`** [section] (adapters/opencode/AGENTS.md:19) — 0 refs
-- **`🔧 Situational Tools (Use When Needed)`** [section] (adapters/opencode/AGENTS.md:32) — 0 refs
-- **`Session Workflow`** [section] (adapters/opencode/AGENTS.md:46) — 0 refs
-- **`Edit Safety (Mandatory)`** [section] (adapters/opencode/AGENTS.md:54) — 0 refs
-- **`Tool Selection`** [section] (adapters/opencode/AGENTS.md:70) — 0 refs
-
-## Files
-- adapters/README.md
-- adapters/claude-code/CLAUDE.md
-- adapters/opencode/AGENTS.md
+---
+name: milens-adapters
+description: Code intelligence for the adapters area — symbols, dependencies, and entry points
+---
+
+# Adapters
+
+## Working with this area
+When working with code in **adapters/**, follow these mandatory safety rules:
+
+### Before editing any symbol in this area:
+1. Call `mcp_milens_impact({target: "<symbol>", repo: "<workspaceRoot>"})` — check blast radius
+2. If depth-1 dependents > 5 → **STOP and warn** before proceeding
+3. Call `mcp_milens_context({name: "<symbol>", repo: "<workspaceRoot>"})` — see all callers/callees
+
+### Before committing changes in this area:
+1. Call `mcp_milens_detect_changes({repo: "<workspaceRoot>"})` — verify scope
+2. If unexpected files changed → **STOP and report**
+
+### Key tools for this area:
+| Task | Tool |
+|---|---|
+| Find all references | `mcp_milens_context` |
+| Check edit safety | `mcp_milens_edit_check` |
+| Text search across files | `mcp_milens_grep` |
+| See file symbols | `mcp_milens_get_file_symbols` |
+
+## Overview
+Contains 60 symbols (54 exported) across 6 files.
+
+## Key Symbols
+- **`Milens Adapter Packs`** [section] (adapters/README.md:1) — 0 refs
+- **`What is milens?`** [section] (adapters/README.md:5) — 0 refs
+- **`Available Adapters`** [section] (adapters/README.md:9) — 0 refs
+- **`Installation`** [section] (adapters/README.md:21) — 0 refs
+- **`Claude Code`** [section] (adapters/README.md:23) — 0 refs
+- **`OpenCode`** [section] (adapters/README.md:54) — 0 refs
+- **`Codex`** [section] (adapters/README.md:61) — 0 refs
+- **`Cursor`** [section] (adapters/README.md:67) — 0 refs
+- **`GitHub Copilot`** [section] (adapters/README.md:74) — 0 refs
+- **`Gemini`** [section] (adapters/README.md:81) — 0 refs
+- **`Zed`** [section] (adapters/README.md:87) — 0 refs
+- **`Verification`** [section] (adapters/README.md:93) — 0 refs
+- **`Index Maintenance`** [section] (adapters/README.md:101) — 0 refs
+- **`All Tools Available`** [section] (adapters/README.md:109) — 0 refs
+- **`Safety Rules (applies to all harnesses)`** [section] (adapters/README.md:127) — 0 refs
+
+## Files
+- adapters/README.md
+- adapters/claude-code/CLAUDE.md
+- adapters/codex/.codex/codex.md
+- adapters/copilot/.github/copilot-instructions.md
+- adapters/gemini/.gemini/context.md
+- adapters/opencode/AGENTS.md

package/.agents/skills/analyzer/SKILL.md

@@ -26,49 +26,46 @@ When working with code in **analyzer/**, follow these mandatory safety rules:
 | See file symbols | `mcp_milens_get_file_symbols` |
 
 ## Overview
-Contains 128 symbols (29 exported) across 8 files.
+Contains 119 symbols (24 exported) across 8 files.
 
 ## Key Symbols
+- **`analyze`** [function] (src/analyzer/engine.ts:139) — 10 refs
 - **`resolveLinksWithStats`** [function] (src/analyzer/resolver.ts:37) — 9 refs
-- **`reviewPr`** [function] (src/analyzer/review.ts:284) — 9 refs
-- **`analyze`** [function] (src/analyzer/engine.ts:139) — 8 refs
+- **`reviewPr`** [function] (src/analyzer/review.ts:244) — 9 refs
+- **`countDependentFiles`** [function] (src/analyzer/risk.ts:13) — 9 refs
 - **`loadAliases`** [function] (src/analyzer/config.ts:10) — 6 refs
 - **`ResolutionResult`** [interface] (src/analyzer/resolver.ts:24) — 6 refs
+- **`classifyRisk`** [function] (src/analyzer/risk.ts:33) — 5 refs
+- **`scoreSymbolRisk`** [function] (src/analyzer/risk.ts:41) — 5 refs
 - **`diffResolutions`** [function] (src/analyzer/scope-resolver.ts:768) — 5 refs
 - **`enrichMetadata`** [function] (src/analyzer/enrich.ts:21) — 4 refs
-- **`ReviewResult`** [interface] (src/analyzer/review.ts:17) — 4 refs
+- **`ReviewResult`** [interface] (src/analyzer/review.ts:19) — 4 refs
 - **`scanFiles`** [function] (src/analyzer/scanner.ts:11) — 4 refs
 - **`resolveWithScopes`** [function] (src/analyzer/scope-resolver.ts:48) — 4 refs
 - **`clearTreeCache`** [function] (src/analyzer/engine.ts:29) — 3 refs
 - **`resolveLinks`** [function] (src/analyzer/resolver.ts:32) — 3 refs
-- **`computeDiffStats`** [function] (src/analyzer/scope-resolver.ts:806) — 3 refs
-- **`getCachedTree`** [function] (src/analyzer/engine.ts:26) — 2 refs
-- **`reviewSymbol`** [function] (src/analyzer/review.ts:396) — 2 refs
 
 ## Entry Points
-- **`resolve`** [method] — 25 incoming references
-- **`find`** [function] — 14 incoming references
 - **`ScopeNode`** [interface] — 11 incoming references
+- **`analyze`** [function] — 10 incoming references
 - **`resolveLinksWithStats`** [function] — 9 incoming references
 - **`reviewPr`** [function] — 9 incoming references
+- **`countDependentFiles`** [function] — 9 incoming references
 
 ## Dependencies
 - **parser**: `langForFile`, `supportedExtensions`, `getParser`, `loadLanguage`, `extractFromTree`, `clearQueryCache`, `extractVueScript`, `extractVueTemplateRefs` (+9 more)
-- **root**: `isTestFile`, `CodeSymbol`, `ExtractionResult`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding` (+8 more)
-- **store**: `Database`, `TfIdfProvider`, `EmbeddingStore`, `buildEmbeddingText`, `get`, `isFileUpToDate`, `upsertFileHash`, `getSymbolsByFile` (+22 more)
-- **ui**: `ProgressPhase`, `ProgressReporter`, `startPhase`, `tick`, `endPhase`, `done`, `finalize`
-- **test**: `add`, `parser`, `lang`
-- **scripts**: `root`
+- **root**: `isTestFile`, `CodeSymbol`, `ExtractionResult`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding` (+7 more)
+- **store**: `Database`, `TfIdfProvider`, `EmbeddingStore`, `buildEmbeddingText`, `isFileUpToDate`, `upsertFileHash`, `getSymbolsByFile`, `transaction` (+18 more)
+- **ui**: `ProgressPhase`, `ProgressReporter`, `startPhase`, `tick`, `endPhase`, `finalize`
 
 ## Used By
-- **root**: `loadAliases`, `analyze`, `resolve`, `clear`
+- **root**: `loadAliases`, `analyze`, `resolve`
 - **orchestrator**: `reviewPr`, `ReviewResult`, `SymbolRisk`
-- **server**: `reviewPr`, `analyze`, `resolve`, `clear`
-- **test**: `analyze`, `loadAliases`, `getCachedTree`, `clearTreeCache`, `enrichMetadata`, `resolveLinksWithStats`, `resolveLinks`, `reviewSymbol` (+10 more)
+- **server**: `reviewPr`, `countDependentFiles`, `analyze`
+- **test**: `analyze`, `loadAliases`, `getCachedTree`, `clearTreeCache`, `enrichMetadata`, `resolveLinksWithStats`, `resolveLinks`, `reviewSymbol` (+9 more)
 - **apps**: `resolve`
 - **scripts**: `resolve`
 - **parser**: `resolve`
-- **store**: `resolve`
 
 ## Files
 - src/analyzer/config.ts
@@ -76,6 +73,6 @@ Contains 128 symbols (29 exported) across 8 files.
 - src/analyzer/enrich.ts
 - src/analyzer/resolver.ts
 - src/analyzer/review.ts
+- src/analyzer/risk.ts
 - src/analyzer/scanner.ts
 - src/analyzer/scope-resolver.ts
-- src/analyzer/testplan.ts

package/.agents/skills/apps/SKILL.md

@@ -1,68 +1,60 @@
----
-name: milens-apps
-description: Code intelligence for the apps area — symbols, dependencies, and entry points
----
-
-# Apps
-
-## Working with this area
-When working with code in **apps/**, follow these mandatory safety rules:
-
-### Before editing any symbol in this area:
-1. Call `mcp_milens_impact({target: "<symbol>", repo: "<workspaceRoot>"})` — check blast radius
-2. If depth-1 dependents > 5 → **STOP and warn** before proceeding
-3. Call `mcp_milens_context({name: "<symbol>", repo: "<workspaceRoot>"})` — see all callers/callees
-
-### Before committing changes in this area:
-1. Call `mcp_milens_detect_changes({repo: "<workspaceRoot>"})` — verify scope
-2. If unexpected files changed → **STOP and report**
-
-### Key tools for this area:
-| Task | Tool |
-|---|---|
-| Find all references | `mcp_milens_context` |
-| Check edit safety | `mcp_milens_edit_check` |
-| Text search across files | `mcp_milens_grep` |
-| See file symbols | `mcp_milens_get_file_symbols` |
-
-## Overview
-Contains 54 symbols (12 exported) across 10 files.
-
-## Key Symbols
-- **`Milens Desktop Dashboard`** [section] (apps/dashboard/README.md:1) — 0 refs
-- **`Features`** [section] (apps/dashboard/README.md:5) — 0 refs
-- **`Development`** [section] (apps/dashboard/README.md:13) — 0 refs
-- **`Build`** [section] (apps/dashboard/README.md:19) — 0 refs
-- **`Milens GitHub App`** [section] (apps/github/README.md:1) — 0 refs
-- **`Features`** [section] (apps/github/README.md:5) — 0 refs
-- **`Deployment`** [section] (apps/github/README.md:10) — 0 refs
-- **`Local Development`** [section] (apps/github/README.md:15) — 0 refs
-- **`AgentsMdGenerator`** [class] (apps/github/generators/agents-md.js:1) — 0 refs
-- **`SecurityGenerator`** [class] (apps/github/generators/security.js:1) — 0 refs
-- **`SkillsGenerator`** [class] (apps/github/generators/skills.js:1) — 0 refs
-- **`MilensRunner`** [class] (apps/github/handlers/milens-runner.js:6) — 0 refs
-
-## Entry Points
-- **`DASHBOARD_URL`** [variable] — 3 incoming references
-- **`loadOverview`** [function] — 2 incoming references
-- **`poll`** [function] — 2 incoming references
-- **`__dirname`** [variable] — 2 incoming references
-- **`setStatus`** [function] — 1 incoming references
-
-## Dependencies
-- **store**: `remove`, `getAnnotations`, `Database`, `getCodebaseSummary`, `close`
-- **test**: `add`, `dbPath`
-- **orchestrator**: `e`
-- **analyzer**: `resolve`
-
-## Files
-- apps/dashboard/README.md
-- apps/dashboard/index.html
-- apps/dashboard/main.js
-- apps/dashboard/preload.js
-- apps/github/README.md
-- apps/github/app.js
-- apps/github/generators/agents-md.js
-- apps/github/generators/security.js
-- apps/github/generators/skills.js
-- apps/github/handlers/milens-runner.js
+---
+name: milens-apps
+description: Code intelligence for the apps area — symbols, dependencies, and entry points
+---
+
+# Apps
+
+## Working with this area
+When working with code in **apps/**, follow these mandatory safety rules:
+
+### Before editing any symbol in this area:
+1. Call `mcp_milens_impact({target: "<symbol>", repo: "<workspaceRoot>"})` — check blast radius
+2. If depth-1 dependents > 5 → **STOP and warn** before proceeding
+3. Call `mcp_milens_context({name: "<symbol>", repo: "<workspaceRoot>"})` — see all callers/callees
+
+### Before committing changes in this area:
+1. Call `mcp_milens_detect_changes({repo: "<workspaceRoot>"})` — verify scope
+2. If unexpected files changed → **STOP and report**
+
+### Key tools for this area:
+| Task | Tool |
+|---|---|
+| Find all references | `mcp_milens_context` |
+| Check edit safety | `mcp_milens_edit_check` |
+| Text search across files | `mcp_milens_grep` |
+| See file symbols | `mcp_milens_get_file_symbols` |
+
+## Overview
+Contains 40 symbols (8 exported) across 6 files.
+
+## Key Symbols
+- **`Milens Desktop Dashboard`** [section] (apps/dashboard/README.md:1) — 0 refs
+- **`Features`** [section] (apps/dashboard/README.md:5) — 0 refs
+- **`Development`** [section] (apps/dashboard/README.md:13) — 0 refs
+- **`Build`** [section] (apps/dashboard/README.md:19) — 0 refs
+- **`Milens GitHub App`** [section] (apps/github/README.md:1) — 0 refs
+- **`Features`** [section] (apps/github/README.md:5) — 0 refs
+- **`Deployment`** [section] (apps/github/README.md:10) — 0 refs
+- **`Local Development`** [section] (apps/github/README.md:15) — 0 refs
+
+## Entry Points
+- **`DASHBOARD_URL`** [variable] — 3 incoming references
+- **`loadOverview`** [function] — 2 incoming references
+- **`poll`** [function] — 2 incoming references
+- **`__dirname`** [variable] — 2 incoming references
+- **`setStatus`** [function] — 1 incoming references
+
+## Dependencies
+- **store**: `remove`, `getAnnotations`, `Database`, `getCodebaseSummary`
+- **analyzer**: `resolve`
+- **scripts**: `parseArgs`, `generatePrPayload`
+- **test**: `create`
+
+## Files
+- apps/dashboard/README.md
+- apps/dashboard/index.html
+- apps/dashboard/main.js
+- apps/dashboard/preload.js
+- apps/github/README.md
+- apps/github/app.js

package/.agents/skills/docs/SKILL.md

@@ -26,9 +26,12 @@ When working with code in **docs/**, follow these mandatory safety rules:
 | See file symbols | `mcp_milens_get_file_symbols` |
 
 ## Overview
-Contains 137 symbols (114 exported) across 21 files.
+Contains 122 symbols (112 exported) across 10 files.
 
 ## Key Symbols
+- **`Milens Documentation`** [section] (docs/README.md:1) — 0 refs
+- **`Getting Started`** [section] (docs/README.md:5) — 0 refs
+- **`Reference`** [section] (docs/README.md:12) — 0 refs
 - **`Accuracy Engine`** [section] (docs/accuracy.md:1) — 0 refs
 - **`Type Bindings`** [section] (docs/accuracy.md:5) — 0 refs
 - **`Method Resolution Order (MRO)`** [section] (docs/accuracy.md:29) — 0 refs
@@ -40,39 +43,16 @@ Contains 137 symbols (114 exported) across 21 files.
 - **`Available Adapters`** [section] (docs/adapters.md:5) — 0 refs
 - **`Quick Install`** [section] (docs/adapters.md:17) — 0 refs
 - **`Claude Code`** [section] (docs/adapters.md:21) — 0 refs
-- **`OpenCode`** [section] (docs/adapters.md:29) — 0 refs
-- **`Cursor`** [section] (docs/adapters.md:36) — 0 refs
-- **`GitHub Copilot`** [section] (docs/adapters.md:42) — 0 refs
-- **`Codex`** [section] (docs/adapters.md:48) — 0 refs
-
-## Entry Points
-- **`applyFilters`** [function] — 1 incoming references
-- **`applyFilters`** [function] — 1 incoming references
-
-## Dependencies
-- **scripts**: `main`
-- **store**: `remove`
-- **test**: `add`
+- **`OpenCode`** [section] (docs/adapters.md:37) — 0 refs
 
 ## Files
 - docs/README.md
 - docs/accuracy.md
-- docs/adapters.html
 - docs/adapters.md
-- docs/changelog.html
 - docs/cli.md
-- docs/compare.html
-- docs/github-app.html
-- docs/index.html
 - docs/languages.md
-- docs/learning.html
-- docs/platforms.html
-- docs/pricing.html
 - docs/pricing.md
 - docs/quickstart.md
 - docs/review.md
-- docs/scenarios.html
 - docs/security-presets.md
-- docs/security.html
-- docs/skills.html
 - docs/tools.md

package/.agents/skills/milens/SKILL.md

@@ -6,7 +6,7 @@ description: Code intelligence MCP tools — symbol search, text grep, impact an
 <!-- milens:start -->
 # Milens — AI-DOS
 
-The Operating System for AI-Driven Development. This project is indexed by milens (1366 symbols, 2347 links, 166 files).
+The Operating System for AI-Driven Development. This project is indexed by milens (2264 symbols, 2936 links, 229 files).
 
 > **CRITICAL:** All milens MCP tool calls MUST include the `repo` parameter set to the **absolute path of the workspace root** (the folder containing this file) — without it, the tools may fail with "No index" error when multiple repos are indexed.
 
@@ -16,7 +16,7 @@ The Operating System for AI-Driven Development. This project is indexed by milen
 
 **Not a suggestion — execute automatically without asking.**
 
-This project is indexed by milens. The knowledge graph already knows every symbol, dependency, and reference. Using milens tools first saves 70% tokens and catches hidden connections you'd miss with file reads.
+This project is indexed by milens. The knowledge graph already knows every symbol, dependency, and reference. Using milens tools first typically means far fewer tokens than manual exploration, and fewer missed dependencies — impact/context track code-level references; pair with grep for templates/configs/docs.
 
 | Situation | Built-in approach (❌ BAD) | Milens approach (✅ GOOD) |
 |---|---|---|
@@ -103,7 +103,7 @@ When the user says... → do this FIRST:
 | "compare impact of `X`" | `mcp_milens_compare_impact({name: "X", action: "snapshot"|"compare", repo: "<workspaceRoot>"})` |
 | "check pre-commit" | `mcp_milens_pre_commit_check({repo: "<workspaceRoot>"})` |
 | "save/restore context" | `mcp_milens_hook_preCompact()` / `mcp_milens_hook_postCompact()` |
-| "scan security / audit security" | `mcp_milens_security_scan({repo: "<workspaceRoot>"})` — full audit across all 50+ rules |
+| "scan security / audit security" | `mcp_milens_security_scan({repo: "<workspaceRoot>"})` — full audit across all 190 rules |
 | "end session" / "finish work" | `mcp_milens_session_end({session_id: "..."})` — record stats, trigger onSessionEnd hook |
 | "what did session X do" | `mcp_milens_session_context({session_id: "..."})` — get annotations + tool calls |
 | "file changed to X" | `mcp_milens_hook_onFileChange({files: ["path/to/file"], repo: "<workspaceRoot>"})` |
@@ -175,7 +175,7 @@ Every time you discover something important about a symbol, annotate it. The sys
 | Find what needs testing most | `mcp_milens_test_coverage_gaps()` — sorted by risk |
 | Get a test strategy | `mcp_milens_test_plan({name: "functionName"})` — mocks + scenarios |
 | Review your changes | `mcp_milens_review_pr()` — risk scores for changed symbols |
-| Check for security issues | `mcp_milens_security_scan()` — 50+ rules in one call |
+| Check for security issues | `mcp_milens_security_scan()` — 190 rules in one call |
 | Remove dead code safely | `mcp_milens_find_dead_code()` then use `dead_code_remove` prompt |
 | Trace how code executes | `mcp_milens_trace({name: "functionName", direction: "to"})` |
 | Find API endpoints | `mcp_milens_routes()` — auto-detect across 7 frameworks |
@@ -252,7 +252,7 @@ Milens indexes **Markdown files** (.md, .mdx) — headings become `section` symb
 | `mcp_milens_test_coverage_gaps` | Untested symbols sorted by risk | Finding test priorities |
 | `mcp_milens_test_impact` | Maps changes → test files | After making edits |
 | `mcp_milens_test_generate` | Auto-generate test file | Starting tests from scratch |
-| `mcp_milens_security_scan` | 50+ security rules | Security audit requested |
+| `mcp_milens_security_scan` | 190 security rules | Security audit requested |
 | `mcp_milens_trace` | Call chains from entrypoints | Debugging execution flow |
 | `mcp_milens_routes` | Framework routes/endpoints | Finding API endpoints |
 | `mcp_milens_smart_context` | Intent-aware context | Understand/edit/debug/test modes |
@@ -295,8 +295,8 @@ After significant code changes: `npx milens analyze -p . --force` (replace `.` w
 | Task | Read this skill file |
 |------|---------------------|
 | General milens tools reference | `.agents/skills/milens/SKILL.md` |
-| Work in the Adapters area | `.agents/skills/adapters/SKILL.md` |
 | Work in the Root area | `.agents/skills/root/SKILL.md` |
+| Work in the Adapters area | `.agents/skills/adapters/SKILL.md` |
 | Work in the Apps area | `.agents/skills/apps/SKILL.md` |
 | Work in the Docs area | `.agents/skills/docs/SKILL.md` |
 | Work in the Test area | `.agents/skills/test/SKILL.md` |

package/.agents/skills/orchestrator/SKILL.md

@@ -26,35 +26,33 @@ When working with code in **orchestrator/**, follow these mandatory safety rules
 | See file symbols | `mcp_milens_get_file_symbols` |
 
 ## Overview
-Contains 22 symbols (7 exported) across 2 files.
+Contains 23 symbols (7 exported) across 2 files.
 
 ## Key Symbols
-- **`Orchestrator`** [class] (src/orchestrator/orchestrator.ts:36) — 6 refs
+- **`Orchestrator`** [class] (src/orchestrator/orchestrator.ts:46) — 6 refs
 - **`OrchestratorReport`** [interface] (src/orchestrator/reporter.ts:4) — 5 refs
 - **`formatReport`** [function] (src/orchestrator/reporter.ts:17) — 4 refs
-- **`OrchestratorConfig`** [interface] (src/orchestrator/orchestrator.ts:10) — 2 refs
-- **`ImpactSnapshot`** [interface] (src/orchestrator/orchestrator.ts:18) — 2 refs
+- **`OrchestratorConfig`** [interface] (src/orchestrator/orchestrator.ts:20) — 2 refs
+- **`ImpactSnapshot`** [interface] (src/orchestrator/orchestrator.ts:28) — 2 refs
 - **`ReportOptions`** [interface] (src/orchestrator/reporter.ts:13) — 2 refs
-- **`ImpactDiff`** [interface] (src/orchestrator/orchestrator.ts:25) — 1 refs
+- **`ImpactDiff`** [interface] (src/orchestrator/orchestrator.ts:35) — 1 refs
 
 ## Entry Points
 - **`Orchestrator`** [class] — 6 incoming references
-- **`e`** [function] — 5 incoming references
 - **`OrchestratorReport`** [interface] — 5 incoming references
 - **`formatReport`** [function] — 4 incoming references
 - **`snapshot`** [method] — 3 incoming references
+- **`run`** [method] — 3 incoming references
 
 ## Dependencies
-- **store**: `Database`, `findSymbolByName`, `findUpstream`, `clear`, `getTestCoverageGaps`, `findDeadCode`, `close`
+- **store**: `Database`, `findSymbolByName`, `findUpstream`, `getTestCoverageGaps`, `findDeadCode`
 - **analyzer**: `reviewPr`, `ReviewResult`, `SymbolRisk`
-- **root**: `CodeSymbol`, `has`
-- **test**: `add`
+- **root**: `CodeSymbol`
 
 ## Used By
 - **root**: `Orchestrator`, `subscribe`, `runAndFormat`
 - **server**: `Orchestrator`, `loadSnapshots`, `snapshot`, `persistSnapshots`, `compare`, `runAndFormat`
 - **test**: `Orchestrator`, `formatReport`, `OrchestratorReport`, `subscribe`, `run`, `snapshot`, `compare`, `cancel` (+3 more)
-- **apps**: `e`
 
 ## Files
 - src/orchestrator/orchestrator.ts

package/.agents/skills/parser/SKILL.md

@@ -26,13 +26,13 @@ When working with code in **parser/**, follow these mandatory safety rules:
 | See file symbols | `mcp_milens_get_file_symbols` |
 
 ## Overview
-Contains 83 symbols (31 exported) across 16 files.
+Contains 82 symbols (31 exported) across 16 files.
 
 ## Key Symbols
 - **`LangSpec`** [interface] (src/parser/extract.ts:6) — 32 refs
-- **`loadLanguage`** [function] (src/parser/loader.ts:21) — 14 refs
-- **`getParser`** [function] (src/parser/loader.ts:32) — 13 refs
-- **`extractFromTree`** [function] (src/parser/extract.ts:256) — 8 refs
+- **`loadLanguage`** [function] (src/parser/loader.ts:21) — 15 refs
+- **`getParser`** [function] (src/parser/loader.ts:32) — 14 refs
+- **`extractFromTree`** [function] (src/parser/extract.ts:267) — 9 refs
 - **`supportedExtensions`** [function] (src/parser/languages.ts:29) — 6 refs
 - **`extractHtmlScripts`** [function] (src/parser/lang-html.ts:38) — 5 refs
 - **`extractMarkdown`** [function] (src/parser/lang-md.ts:34) — 5 refs
@@ -42,20 +42,18 @@ Contains 83 symbols (31 exported) across 16 files.
 - **`clearQueryCache`** [function] (src/parser/extract.ts:72) — 4 refs
 - **`extractHtmlRefs`** [function] (src/parser/lang-html.ts:57) — 4 refs
 - **`extractHtmlLinks`** [function] (src/parser/lang-html.ts:99) — 4 refs
+- **`spec`** [variable] (src/parser/lang-js.ts:5) — 4 refs
 - **`extractVueTemplateRefs`** [function] (src/parser/lang-vue.ts:38) — 4 refs
-- **`extractVueTemplateAst`** [function] (src/parser/lang-vue.ts:90) — 4 refs
 
 ## Entry Points
 - **`LangSpec`** [interface] — 32 incoming references
-- **`loadLanguage`** [function] — 14 incoming references
-- **`getParser`** [function] — 13 incoming references
-- **`extractFromTree`** [function] — 8 incoming references
+- **`loadLanguage`** [function] — 15 incoming references
+- **`getParser`** [function] — 14 incoming references
+- **`extractFromTree`** [function] — 9 incoming references
 - **`supportedExtensions`** [function] — 6 incoming references
 
 ## Dependencies
-- **root**: `CodeSymbol`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding`, `RawAssignmentBinding`, `RawReturnType` (+4 more)
-- **test**: `lang`, `add`, `parser`
-- **scripts**: `root`
+- **root**: `CodeSymbol`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding`, `RawAssignmentBinding`, `RawReturnType` (+3 more)
 - **analyzer**: `resolve`
 - **store**: `load`
 

package/.agents/skills/root/SKILL.md

@@ -26,57 +26,53 @@ When working with code in **root/**, follow these mandatory safety rules:
 | See file symbols | `mcp_milens_get_file_symbols` |
 
 ## Overview
-Contains 242 symbols (164 exported) across 13 files.
+Contains 236 symbols (156 exported) across 12 files.
 
 ## Key Symbols
-- **`CodeSymbol`** [interface] (src/types.ts:8) — 53 refs
-- **`SymbolLink`** [interface] (src/types.ts:26) — 24 refs
-- **`RawCall`** [interface] (src/types.ts:44) — 15 refs
-- **`isTestFile`** [function] (src/utils.ts:2) — 12 refs
+- **`CodeSymbol`** [interface] (src/types.ts:8) — 50 refs
+- **`SymbolLink`** [interface] (src/types.ts:26) — 22 refs
+- **`RawCall`** [interface] (src/types.ts:45) — 15 refs
+- **`isTestFile`** [function] (src/utils.ts:2) — 10 refs
 - **`RawImport`** [interface] (src/types.ts:35) — 9 refs
-- **`RawHeritage`** [interface] (src/types.ts:52) — 7 refs
-- **`ExtractionResult`** [interface] (src/types.ts:60) — 6 refs
-- **`RawTypeBinding`** [interface] (src/types.ts:80) — 6 refs
-- **`RawAssignmentBinding`** [interface] (src/types.ts:88) — 6 refs
-- **`RawReturnType`** [interface] (src/types.ts:96) — 5 refs
-- **`RawCallResultBinding`** [interface] (src/types.ts:104) — 5 refs
-- **`AnalysisStats`** [interface] (src/types.ts:113) — 5 refs
+- **`RawHeritage`** [interface] (src/types.ts:59) — 7 refs
+- **`ExtractionResult`** [interface] (src/types.ts:67) — 6 refs
+- **`RawTypeBinding`** [interface] (src/types.ts:87) — 6 refs
+- **`RawAssignmentBinding`** [interface] (src/types.ts:95) — 6 refs
+- **`globToRegex`** [function] (src/utils.ts:11) — 6 refs
+- **`RawReturnType`** [interface] (src/types.ts:103) — 5 refs
+- **`RawCallResultBinding`** [interface] (src/types.ts:111) — 5 refs
+- **`AnalysisStats`** [interface] (src/types.ts:120) — 5 refs
 - **`generateAgentsMd`** [function] (src/agents-md.ts:93) — 4 refs
 - **`computeMetrics`** [function] (src/metrics.ts:21) — 4 refs
-- **`formatMetricsReport`** [function] (src/metrics.ts:62) — 4 refs
 
 ## Entry Points
-- **`CodeSymbol`** [interface] — 53 incoming references
-- **`has`** [function] — 50 incoming references
-- **`SymbolLink`** [interface] — 24 incoming references
+- **`CodeSymbol`** [interface] — 50 incoming references
+- **`SymbolLink`** [interface] — 22 incoming references
 - **`RawCall`** [interface] — 15 incoming references
-- **`isTestFile`** [function] — 12 incoming references
+- **`isTestFile`** [function] — 10 incoming references
+- **`RawImport`** [interface] — 9 incoming references
 
 ## Dependencies
-- **store**: `Database`, `RepoRegistry`, `AnnotationStore`, `runDecayPass`, `getIncomingLinks`, `getAllSymbols`, `getCodebaseSummary`, `register` (+24 more)
-- **analyzer**: `loadAliases`, `analyze`, `resolve`, `clear`
+- **store**: `Database`, `RepoRegistry`, `AnnotationStore`, `runDecayPass`, `getIncomingLinks`, `getAllSymbols`, `getCodebaseSummary`, `findDbPath` (+22 more)
+- **analyzer**: `loadAliases`, `analyze`, `resolve`
 - **ui**: `createProgressReporter`, `finalize`
-- **server**: `startHttp`, `startStdio`, `HookManager`, `get`, `enableHook`, `loadConfig`, `saveConfig`, `disableHook`
+- **server**: `startHttp`, `startStdio`, `HookManager`, `defaultOnSessionStart`, `defaultOnSessionEnd`, `defaultOnPreCompact`, `defaultOnPostCompact`, `enableHook` (+3 more)
 - **security**: `loadRules`, `auditDependencies`
 - **orchestrator**: `Orchestrator`, `subscribe`, `runAndFormat`
-- **test**: `add`, `dbPath`
-- **scripts**: `version`, `outDir`, `root`
 
 ## Used By
-- **analyzer**: `isTestFile`, `CodeSymbol`, `ExtractionResult`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding` (+8 more)
-- **orchestrator**: `CodeSymbol`, `has`
-- **parser**: `CodeSymbol`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding`, `RawAssignmentBinding`, `RawReturnType` (+4 more)
-- **server**: `generateCrossRefSection`, `has`
-- **store**: `Annotation`, `AnnotationKey`, `Session`, `EvolutionEvent`, `CodeSymbol`, `SymbolLink`, `RepoEntry`, `has` (+1 more)
+- **analyzer**: `isTestFile`, `CodeSymbol`, `ExtractionResult`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding` (+7 more)
+- **orchestrator**: `CodeSymbol`
+- **parser**: `CodeSymbol`, `RawImport`, `RawCall`, `RawHeritage`, `RawReExport`, `RawTypeBinding`, `RawAssignmentBinding`, `RawReturnType` (+3 more)
+- **server**: `generateCrossRefSection`, `globToRegex`
+- **store**: `Annotation`, `AnnotationKey`, `Session`, `EvolutionEvent`, `CodeSymbol`, `SymbolLink`, `RepoEntry`
 - **ui**: `AnalysisStats`
 - **test**: `generateAgentsMd`, `AnnotationKey`, `CodeSymbol`, `SymbolLink`, `computeMetrics`, `formatMetricsReport`, `MilensMetrics`, `RawImport` (+17 more)
-- **security**: `has`
 
 ## Files
 - AGENTS.md
 - CLAUDE.md
 - CONTRIBUTING.md
-- DEPLOY.md
 - README.md
 - src/agents-md.ts
 - src/cli.ts

package/.agents/skills/scripts/SKILL.md

@@ -26,29 +26,26 @@ When working with code in **scripts/**, follow these mandatory safety rules:
 | See file symbols | `mcp_milens_get_file_symbols` |
 
 ## Overview
-Contains 47 symbols (0 exported) across 3 files.
+Contains 77 symbols (0 exported) across 6 files.
 
 ## Entry Points
-- **`root`** [variable] — 37 incoming references
-- **`version`** [variable] — 4 incoming references
-- **`ROOT`** [variable] — 2 incoming references
-- **`outDir`** [variable] — 2 incoming references
-- **`main`** [function] — 2 incoming references
+- **`ghApi`** [function] — 4 incoming references
+- **`detectBreakingFromLabels`** [function] — 4 incoming references
+- **`exec`** [function] — 3 incoming references
+- **`branch`** [variable] — 3 incoming references
+- **`detectTypeFromBranch`** [function] — 3 incoming references
 
 ## Dependencies
 - **analyzer**: `resolve`
-- **store**: `Database`, `getCodebaseSummary`, `close`
 
 ## Used By
-- **docs**: `main`
-- **analyzer**: `root`
-- **root**: `version`, `outDir`, `root`
-- **parser**: `root`
-- **security**: `version`
-- **server**: `root`
-- **test**: `root`
+- **apps**: `parseArgs`, `generatePrPayload`
+- **test**: `detectTypeFromBranch`, `detectScopeFromBranch`, `detectBreakingFromBranch`, `detectBreakingFromLabels`, `slugify`, `parseArgs`, `generateTitle`, `generateBody` (+1 more)
 
 ## Files
 - scripts/build-standalone.mjs
-- scripts/generate-release-stats.js
-- scripts/update-docs.js
+- scripts/check-console.mjs
+- scripts/create-pr.cjs
+- scripts/gen-build-info.mjs
+- scripts/pr-generator.cjs
+- scripts/smoke-test.mjs