memory-journal-mcp 6.1.2 → 6.2.1

package/releases/v6.0.1.md

@@ -1,36 +0,0 @@
-# v6.0.1 — Docker Image Optimization & CI Updates
-
-## Highlights
-
-- **Docker image reduced from ~733 MB to ~250 MB** on amd64 by stripping unused ONNX runtime binaries and moving npm to the builder stage
-- **5 GitHub Actions dependency bumps** merged from Dependabot
-
-## Changed
-
-### Docker Image Size Optimization
-
-Reduced amd64 image from ~733 MB to ~250 MB:
-
-- Moved npm global upgrade + CVE patches to builder stage only; removed npm/npx from production image
-- Production `npm ci --omit=dev` runs in builder; `node_modules` copied via `COPY --from=builder`
-- Stripped `onnxruntime-web` entirely (browser-only runtime, ~90 MB)
-- Stripped non-Linux `onnxruntime-node` platform binaries (darwin + win32, ~132 MB)
-
-### CI Dependency Updates
-
-- `github/codeql-action` SHA update (#263)
-- `actions/download-artifact` 7.0.0 → 8.0.1 (#264)
-- `github/gh-aw` 0.57.2 → 0.58.1 (#265)
-- `trufflesecurity/trufflehog` 3.93.7 → 3.93.8 (#266)
-- `docker/scout-action` 1.18.2 → 1.20.2 (#267)
-
----
-
-**Full Changelog**: [v6.0.0...v6.0.1](https://github.com/neverinfamous/memory-journal-mcp/compare/v6.0.0...v6.0.1)
-
-**Install:**
-
-```bash
-npm install memory-journal-mcp@6.0.1
-docker pull writenotenow/memory-journal-mcp:v6.0.1
-```

package/releases/v6.1.0.md

@@ -1,68 +0,0 @@
-# v6.1.0 — Team Parity, Dynamic Help, Code Mode Auto-Return
-
-## Highlights
-
-- **Team Tools Parity** → 17 new team tools (3 → 20) with full feature parity including vector search, relationships, export, and cross-project insights
-- **Dynamic Help Resources** → `memory://help` and `memory://help/{group}` auto-generated from live tool definitions — zero maintenance overhead
-- **Code Mode Auto-Return** → Bare expressions like `mj.help()` now correctly return values (REPL semantics)
-- **OAuth Scope Enforcement** → Per-tool HTTP-level scope gating now active (read/write/admin)
-- **46 New E2E Tests** → Template resources, Code Mode API, error contracts, tool filtering, OAuth scopes
-
-## Added
-
-- 17 new team tools: CRUD, search, stats, relationships, export, backup, vector search, cross-project insights
-- `memory://rules`, `memory://workflows`, `memory://skills` resources with caching
-- Dynamic `memory://help` and `memory://help/{group}` runtime-generated tool reference
-- Error auto-refinement and `structuredContent` on error responses
-- Query helpers (`coerceNumber`, `coerceBoolean`, `coerceLimit`) and resource annotation presets
-- Per-tool OAuth scope enforcement middleware
-- Tool invariant tests (annotations, output schemas, titles)
-- Test coverage → 96.21% with Code Mode coverage mock
-
-## Changed
-
-- Server instructions refactored: ~55% reduction, ~33% token savings, filter-aware sections
-- `essential` and `starter` shortcuts now include `codemode`
-- `memory://significant` batched importance (eliminates N+1 queries)
-- npm publish gated behind Docker Scout checks
-- Version SSoT via `src/version.ts`
-- `relaxedNumber()` upgraded from `z.any()` to `z.union([z.number(), z.string()])`
-- Compact JSON for tool responses (~15-20% payload reduction)
-- 27 npm dependency updates, 0 vulnerabilities
-
-## Fixed
-
-- Code Mode auto-return for bare expressions (CM-1)
-- FTS5 phrase search with porter stemmer (rewrites quoted phrases to AND-joined terms)
-- Sandbox readonly `TypeError` → structured error proxy
-- `search_entries` filter regressions (pr_status, workflow_run_id)
-- `link_entries` self-loop prevention + directional-only duplicate detection
-- `team_get_cross_project_insights` scaling trap (SQLite 999 binding limit)
-- 27 ad-hoc error responses standardized across all handler files
-- `restore_backup(confirm: false)` raw MCP error leak
-- FTS5 ghost entry cleanup on startup
-- `team_export_entries` filter-then-limit ordering
-
-## Security
-
-- SLSA Build L3 attestation (`--provenance` on npm publish)
-- CodeQL `security-extended,security-and-quality` query sets
-- CI action SHA pinning (codeql-action v4.33.0, gh-aw v0.58.3, upload-artifact v7)
-- `.gitleaks.toml` and `.trivyignore` configuration
-- `flatted` 3.4.2 prototype pollution resolved
-
-## Tests
-
-- 46 new E2E tests across 5 spec files (templates, Code Mode API, error contracts, tool filtering, OAuth scopes)
-
----
-
-**Compare**: [`v6.0.1...v6.1.0`](https://github.com/neverinfamous/memory-journal-mcp/compare/v6.0.1...v6.1.0)
-
-**Install**:
-
-```bash
-npm install -g memory-journal-mcp@6.1.0
-# or
-docker pull writenotenow/memory-journal-mcp:v6.1.0
-```

package/releases/v6.1.1.md

@@ -1,30 +0,0 @@
-# v6.1.1 — CodeQL Security & Hygiene Patch
-
-Resolves 16 CodeQL alerts introduced with the v6.1.0 scan: 3 medium (Docker workflow), 1 warning (useless assignment), 12 notes (unused variables in tests).
-
-## Highlights
-
-- **Docker Workflow Hardening** — Removed explicit `ref: ${{ github.event.workflow_run.head_sha }}` from checkout steps to resolve "untrusted checkout in trusted context" alerts
-- **Dead Code Removal** — Cleaned up 12 unused variables, imports, and constants across test files
-- **Source Hygiene** — Removed useless initial assignment in `github-section.ts`
-
-## Security
-
-- Remove `ref:` from `docker-publish.yml` checkout steps (#145, #146, #147) — workflow only triggers on main via `workflow_run`, so default checkout is safe
-
-## Fixed
-
-- Remove dead `= 'unknown'` initializer on `status` in `github-section.ts` (#148)
-- Remove 12 unused variables/imports across test and utility files (#149–#160)
-
----
-
-**Compare**: [`v6.1.0...v6.1.1`](https://github.com/neverinfamous/memory-journal-mcp/compare/v6.1.0...v6.1.1)
-
-```bash
-npm install -g memory-journal-mcp@6.1.1
-```
-
-```bash
-docker pull writenotenow/memory-journal-mcp:v6.1.1
-```

package/releases/v6.1.2.md

@@ -1,23 +0,0 @@
-# v6.1.2 — CodeQL Cleanup (Follow-up)
-
-Resolves 4 remaining CodeQL alerts from v6.1.1: 3 Docker workflow untrusted-checkout and 1 unused import.
-
-## Security
-
-- Remove `ref: ${{ github.event.workflow_run.head_sha }}` from `docker-publish.yml` checkout steps — CodeQL does not accept `persist-credentials: false` as mitigation (#145, #146, #161)
-
-## Fixed
-
-- Remove orphaned `jose` import from `entries-auth-branches.test.ts` (#162), cascading from v6.1.1 `err` variable removal
-
----
-
-**Compare**: [`v6.1.1...v6.1.2`](https://github.com/neverinfamous/memory-journal-mcp/compare/v6.1.1...v6.1.2)
-
-```bash
-npm install -g memory-journal-mcp@6.1.2
-```
-
-```bash
-docker pull writenotenow/memory-journal-mcp:v6.1.2
-```

package/scripts/generate-server-instructions.ts

@@ -1,306 +0,0 @@
-/**
- * Generates src/constants/server-instructions.ts from src/constants/server-instructions.md
- *
- * Reads the markdown source file, splits it by section delimiters,
- * escapes for template literals, and produces the full TypeScript module
- * with types, constants, and the generateInstructions function.
- *
- * Sections: CORE, COPILOT, CODE_MODE, GITHUB, HELP_POINTERS, SERVER_ACCESS
- * CORE is always included. COPILOT and CODE_MODE are conditionally included
- * based on enabled tool groups. GITHUB is conditional at standard+ level.
- *
- * Usage: node scripts/generate-server-instructions.ts
- */
-
-import { readFileSync, writeFileSync } from 'node:fs'
-import { dirname, resolve } from 'node:path'
-import { fileURLToPath } from 'node:url'
-
-const __dirname = dirname(fileURLToPath(import.meta.url))
-const projectRoot = resolve(__dirname, '..')
-
-const mdPath = resolve(projectRoot, 'src/constants/server-instructions.md')
-const tsPath = resolve(projectRoot, 'src/constants/server-instructions.ts')
-
-// Read plain markdown source
-const markdown = readFileSync(mdPath, 'utf-8')
-
-// Section names in order
-const SECTION_NAMES = ['CORE', 'COPILOT', 'CODE_MODE', 'GITHUB', 'HELP_POINTERS', 'SERVER_ACCESS']
-
-/**
- * Parse sections from markdown using <!-- SECTION:NAME --> delimiters
- */
-function parseSections(content) {
-    const sections = {}
-
-    for (let i = 0; i < SECTION_NAMES.length; i++) {
-        const name = SECTION_NAMES[i]
-        const startMarker = '<!-- SECTION:' + name + ' -->'
-        const startIdx = content.indexOf(startMarker)
-
-        if (startIdx === -1) {
-            throw new Error('Missing section marker: ' + startMarker)
-        }
-
-        const contentStart = startIdx + startMarker.length
-
-        // Find next section marker or end of file
-        let contentEnd
-        if (i + 1 < SECTION_NAMES.length) {
-            const nextMarker = '<!-- SECTION:' + SECTION_NAMES[i + 1] + ' -->'
-            contentEnd = content.indexOf(nextMarker)
-            if (contentEnd === -1) {
-                throw new Error('Missing section marker: ' + nextMarker)
-            }
-        } else {
-            contentEnd = content.length
-        }
-
-        // Trim leading/trailing whitespace but preserve internal structure
-        sections[name] = content.slice(contentStart, contentEnd).trim()
-    }
-
-    return sections
-}
-
-/**
- * Escape content for use inside a JS/TS template literal
- */
-function escapeForTemplateLiteral(content) {
-    return content.replace(/\\/g, '\\\\').replace(/`/g, '\\`').replace(/\$\{/g, '\\${')
-}
-
-const sections = parseSections(markdown)
-
-// Read the function body template (static TypeScript code after the constants)
-const FUNCTION_BODY = readFileSync(
-    resolve(projectRoot, 'scripts/server-instructions-function-body.ts'),
-    'utf-8'
-)
-
-// Read the gotchas content (kept as a separate const, not in .md sections)
-const GOTCHAS_BODY = readFileSync(
-    resolve(projectRoot, 'scripts/server-instructions-gotchas.ts'),
-    'utf-8'
-)
-
-// Build the TypeScript file using string concatenation to avoid nested escaping
-const lines = []
-
-lines.push('/**')
-lines.push(' * Server instructions for Memory Journal MCP.')
-lines.push(' *')
-lines.push(' * ⚠️  AUTO-GENERATED — DO NOT EDIT THIS FILE DIRECTLY')
-lines.push(' *     Edit src/constants/server-instructions.md instead,')
-lines.push(' *     then run: npm run generate:instructions')
-lines.push(' *')
-lines.push(' * These instructions are automatically sent to MCP clients during initialization,')
-lines.push(' * providing guidance for AI agents on tool usage.')
-lines.push(' *')
-lines.push(' * Tool parameter reference is served dynamically via memory://help/{group}.')
-lines.push(' * Field notes and gotchas are served via memory://help/gotchas.')
-lines.push(' *')
-lines.push(' * Optimized for token efficiency with tiered instruction levels.')
-lines.push(' * Sections are conditionally included based on enabled tool groups.')
-lines.push(' */')
-lines.push('')
-lines.push("import type { ToolGroup } from '../types/index.js'")
-lines.push("import { TOOL_GROUPS, getEnabledGroups } from '../filtering/tool-filter.js'")
-lines.push('')
-lines.push('/**')
-lines.push(' * Resource definition for instruction generation')
-lines.push(' */')
-lines.push('export interface ResourceDefinition {')
-lines.push('    uri: string')
-lines.push('    name: string')
-lines.push('    description?: string')
-lines.push('}')
-lines.push('')
-lines.push('/**')
-lines.push(' * Prompt definition for instruction generation')
-lines.push(' */')
-lines.push('export interface PromptDefinition {')
-lines.push('    name: string')
-lines.push('    description?: string')
-lines.push('}')
-lines.push('')
-lines.push('/**')
-lines.push(' * Latest entry snapshot for initial briefing')
-lines.push(' */')
-lines.push('export interface LatestEntrySnapshot {')
-lines.push('    id: number')
-lines.push('    timestamp: string')
-lines.push('    entryType: string')
-lines.push('    content: string')
-lines.push('}')
-lines.push('')
-lines.push('/**')
-lines.push(' * Instruction detail level for token efficiency')
-lines.push(' * - essential: ~200 tokens - Core behaviors only (for token-constrained clients)')
-lines.push(' * - standard: ~350 tokens - + GitHub patterns + help pointers')
-lines.push(' * - full: ~400 tokens - + active tools/prompts summary')
-lines.push(' */')
-lines.push("export type InstructionLevel = 'essential' | 'standard' | 'full'")
-lines.push('')
-
-// ---- Composable Segments ----
-
-lines.push('// =============================================================================')
-lines.push('// Composable Instruction Segments')
-lines.push('// =============================================================================')
-lines.push('')
-lines.push('/**')
-lines.push(' * Core behavioral guidance — always included regardless of enabled groups.')
-lines.push(' * Session Start, Behaviors, Rule & Skill Suggestions.')
-lines.push(' */')
-lines.push('const CORE_INSTRUCTIONS = `' + escapeForTemplateLiteral(sections.CORE) + '\n`')
-lines.push('')
-lines.push('/**')
-lines.push(' * Copilot Review Patterns — only when `github` group is enabled.')
-lines.push(' * References `get_copilot_reviews` which is a GitHub tool.')
-lines.push(' */')
-lines.push(
-    'const COPILOT_REVIEW_INSTRUCTIONS = `\\n' + escapeForTemplateLiteral(sections.COPILOT) + '\n`'
-)
-lines.push('')
-lines.push('/**')
-lines.push(' * Quick Access table — always included.')
-lines.push(' * The semantic_search row is conditional on the `search` group.')
-lines.push(' */')
-lines.push('function buildQuickAccess(groups: Set<ToolGroup>): string {')
-lines.push('    let table = `')
-lines.push('## Quick Access')
-lines.push('')
-lines.push('| Purpose         | Action                      |')
-lines.push('| --------------- | --------------------------- |')
-lines.push('| Session context | \\`memory://briefing\\`         |')
-lines.push('| Recent entries  | \\`memory://recent\\`           |')
-lines.push('| Health/time     | \\`memory://health\\`           |')
-lines.push('`')
-lines.push("    if (groups.has('search')) {")
-lines.push('        table += `| Semantic search | \\`semantic_search(query)\\`    |')
-lines.push('`')
-lines.push('    }')
-lines.push('    table += `| Full context    | \\`get-context-bundle\\` prompt |')
-lines.push('`')
-lines.push('    return table')
-lines.push('}')
-lines.push('')
-lines.push('/**')
-lines.push(' * Code Mode namespace row definitions.')
-lines.push(' * Each maps a tool group to its Code Mode API namespace.')
-lines.push(' */')
-lines.push(
-    'const CODE_MODE_NAMESPACE_ROWS: { group: ToolGroup; label: string; namespace: string; example: string }[] = ['
-)
-lines.push(
-    "    { group: 'core', label: 'Core', namespace: '`mj.core.*`', example: '`mj.core.createEntry(\"Implemented feature X\")`' },"
-)
-lines.push(
-    "    { group: 'search', label: 'Search', namespace: '`mj.search.*`', example: '`mj.search.searchEntries(\"performance\")`' },"
-)
-lines.push(
-    "    { group: 'analytics', label: 'Analytics', namespace: '`mj.analytics.*`', example: '`mj.analytics.getStatistics()`' },"
-)
-lines.push(
-    "    { group: 'relationships', label: 'Relationships', namespace: '`mj.relationships.*`', example: '`mj.relationships.linkEntries(1, 2, \"implements\")`' },"
-)
-lines.push(
-    "    { group: 'export', label: 'Export', namespace: '`mj.export.*`', example: '`mj.export.exportEntries(\"json\")`' },"
-)
-lines.push(
-    "    { group: 'admin', label: 'Admin', namespace: '`mj.admin.*`', example: '`mj.admin.rebuildVectorIndex()`' },"
-)
-lines.push(
-    "    { group: 'github', label: 'GitHub', namespace: '`mj.github.*`', example: '`mj.github.getGithubIssues({ state: \"open\" })`' },"
-)
-lines.push(
-    "    { group: 'backup', label: 'Backup', namespace: '`mj.backup.*`', example: '`mj.backup.backupJournal()`' },"
-)
-lines.push(
-    "    { group: 'team', label: 'Team', namespace: '`mj.team.*`', example: '`mj.team.teamCreateEntry(\"Team update\")`' },"
-)
-lines.push(']')
-lines.push('')
-lines.push('/**')
-lines.push(' * Code Mode section — only when `codemode` group is enabled.')
-lines.push(' * The namespace table dynamically omits rows for disabled groups.')
-lines.push(
-    ' * The behavioral text (await patterns, readonly, return shape) comes from the .md source.'
-)
-lines.push(' */')
-lines.push('function buildCodeModeInstructions(groups: Set<ToolGroup>): string {')
-lines.push('    // Build namespace table with only enabled groups')
-lines.push('    const rows = CODE_MODE_NAMESPACE_ROWS')
-lines.push('        .filter((r) => groups.has(r.group))')
-lines.push(
-    '        .map((r) => `| ${r.label.padEnd(13)} | ${r.namespace.padEnd(20)} | ${r.example.padEnd(50)} |`)'
-)
-lines.push("        .join('\\n')")
-lines.push('')
-lines.push('    // Build the static behavioral text from the .md source,')
-lines.push('    // but replace the full namespace table with the filtered version')
-lines.push('    const fullSection = CODE_MODE_FULL_TEXT')
-lines.push("    const tableStart = fullSection.indexOf('| Group')")
-lines.push("    const tableEnd = fullSection.indexOf('\\n\\n**Features**')")
-lines.push('    if (tableStart === -1 || tableEnd === -1) {')
-lines.push('        // Fallback: return full section if markers not found')
-lines.push("        return '\\n' + fullSection")
-lines.push('    }')
-lines.push('    const beforeTable = fullSection.slice(0, tableStart)')
-lines.push(
-    "    const headerLine = '| Group         | Namespace            | Example                                            |'"
-)
-lines.push(
-    "    const separatorLine = '| ------------- | -------------------- | -------------------------------------------------- |'"
-)
-lines.push('    const afterTable = fullSection.slice(tableEnd)')
-lines.push(
-    "    return '\\n' + beforeTable + headerLine + '\\n' + separatorLine + '\\n' + rows + afterTable"
-)
-lines.push('}')
-lines.push('')
-lines.push('/**')
-lines.push(' * Full Code Mode section text from .md source (used as template for filtered version)')
-lines.push(' */')
-lines.push('const CODE_MODE_FULL_TEXT = `' + escapeForTemplateLiteral(sections.CODE_MODE) + '\n`')
-lines.push('')
-
-// ---- Original static sections ----
-lines.push('/**')
-lines.push(' * GitHub integration patterns (~150 additional tokens)')
-lines.push(' * Only included when `github` group is enabled.')
-lines.push(' */')
-lines.push('const GITHUB_INSTRUCTIONS = `\\n' + escapeForTemplateLiteral(sections.GITHUB) + '\n`')
-lines.push('')
-lines.push('/**')
-lines.push(' * Help resource pointers — directs agents to pull-based reference')
-lines.push(' */')
-lines.push('const HELP_POINTERS = `\\n' + escapeForTemplateLiteral(sections.HELP_POINTERS) + '\n`')
-lines.push('')
-lines.push('/**')
-lines.push(' * Server access instructions - critical for AI agents to call tools correctly')
-lines.push(' */')
-lines.push(
-    'const SERVER_ACCESS_INSTRUCTIONS = `\\n' +
-        escapeForTemplateLiteral(sections.SERVER_ACCESS) +
-        '\n`'
-)
-lines.push('')
-lines.push(GOTCHAS_BODY)
-lines.push('')
-lines.push(FUNCTION_BODY)
-lines.push('')
-
-const tsContent = lines.join('\n')
-
-writeFileSync(tsPath, tsContent, 'utf-8')
-
-process.stderr.write(
-    '✅ Generated server-instructions.ts (' +
-        tsContent.length.toLocaleString() +
-        ' bytes) from server-instructions.md (' +
-        markdown.length.toLocaleString() +
-        ' bytes)\n'
-)

package/scripts/server-instructions-function-body.ts

@@ -1,107 +0,0 @@
-/**
- * Generate dynamic instructions based on enabled tools, resources, prompts, and latest entry.
- *
- * Sections are conditionally included based on which tool groups are enabled:
- * - Copilot Review Patterns → only with `github` group
- * - Code Mode → only with `codemode` group (namespace table only lists enabled groups)
- * - GitHub Integration → only with `github` group (standard+ level)
- * - Quick Access semantic_search row → only with `search` group
- *
- * @param enabledTools - Set of enabled tool names
- * @param prompts - Available prompt definitions
- * @param latestEntry - Optional latest entry for context snapshot
- * @param level - Instruction detail level (default: 'standard')
- * @param enabledGroups - Optional pre-computed enabled groups; derived from enabledTools if omitted
- */
-export function generateInstructions(
-    enabledTools: Set<string>,
-    prompts: PromptDefinition[],
-    latestEntry?: LatestEntrySnapshot,
-    level: InstructionLevel = 'standard',
-    enabledGroups?: Set<ToolGroup>
-): string {
-    // Derive enabled groups from enabled tools if not provided (backward compat)
-    const groups = enabledGroups ?? getEnabledGroups(enabledTools)
-
-    // Always start with core behavioral guidance
-    let instructions = CORE_INSTRUCTIONS
-
-    // Copilot Review Patterns — only when github group is enabled
-    if (groups.has('github')) {
-        instructions += COPILOT_REVIEW_INSTRUCTIONS
-    }
-
-    // Quick Access — always, but semantic_search row conditional on search group
-    instructions += buildQuickAccess(groups)
-
-    // Code Mode — only when codemode group is enabled
-    if (groups.has('codemode')) {
-        instructions += buildCodeModeInstructions(groups)
-    }
-
-    // Add latest entry snapshot for immediate context (compact format)
-    if (latestEntry) {
-        const preview = latestEntry.content.slice(0, 120)
-        instructions += `\n**Latest**: #${String(latestEntry.id)} (${latestEntry.timestamp}) ${latestEntry.entryType}\n> ${preview}${latestEntry.content.length > 120 ? '...' : ''}\n`
-    }
-
-    // Standard and full levels include GitHub patterns + help pointers
-    if (level === 'standard' || level === 'full') {
-        if (groups.has('github')) {
-            instructions += GITHUB_INSTRUCTIONS
-        }
-        instructions += HELP_POINTERS
-    }
-
-    // Full level includes server access instructions + active tools/prompts summary
-    if (level === 'full') {
-        instructions += SERVER_ACCESS_INSTRUCTIONS
-
-        // Add active tools summary
-        const activeGroups = getActiveToolGroups(enabledTools)
-        if (activeGroups.length > 0) {
-            instructions += `\n## Active Tools (${String(enabledTools.size)})\n`
-            for (const { group, tools } of activeGroups) {
-                instructions += `**${group}**: ${tools.map((t) => `\`${t}\``).join(', ')}\n`
-            }
-        }
-
-        // Add prompts section
-        if (prompts.length > 0) {
-            instructions += `\n## Prompts (${String(prompts.length)})\n`
-            instructions += 'Pre-built templates and guided workflows:\n'
-            for (const prompt of prompts) {
-                instructions += `- \`${prompt.name}\` - ${prompt.description ?? ''}\n`
-            }
-        }
-    }
-
-    return instructions
-}
-
-/**
- * Get active tool groups with their enabled tools
- */
-function getActiveToolGroups(enabledTools: Set<string>): { group: ToolGroup; tools: string[] }[] {
-    const activeGroups: { group: ToolGroup; tools: string[] }[] = []
-
-    for (const [group, allTools] of Object.entries(TOOL_GROUPS) as [ToolGroup, string[]][]) {
-        const enabledInGroup = allTools.filter((tool) => enabledTools.has(tool))
-        if (enabledInGroup.length > 0) {
-            activeGroups.push({ group, tools: enabledInGroup })
-        }
-    }
-
-    return activeGroups
-}
-
-/**
- * Static instructions for backward compatibility
- * @deprecated Use generateInstructions() instead for dynamic content
- */
-export const SERVER_INSTRUCTIONS =
-    CORE_INSTRUCTIONS +
-    COPILOT_REVIEW_INSTRUCTIONS +
-    buildQuickAccess(new Set(Object.keys(TOOL_GROUPS) as ToolGroup[])) +
-    buildCodeModeInstructions(new Set(Object.keys(TOOL_GROUPS) as ToolGroup[])) +
-    GITHUB_INSTRUCTIONS

package/scripts/server-instructions-gotchas.ts

@@ -1,45 +0,0 @@
-/**
- * Field notes and gotchas — served via memory://help/gotchas resource.
- * Exported so the help resource handler can access it.
- */
-export const GOTCHAS_CONTENT = `# memory-journal-mcp — Field Notes & Gotchas
-
-## ⚠️ Critical Patterns
-
-- **\`autoContext\`**: Reserved for future automatic context capture. Currently always \`null\`.
-- **\`memory://tags\` vs \`list_tags\`**: Resource includes \`id\`, \`name\`, \`count\`; tool returns only \`name\`, \`count\`. Neither returns orphan tags with zero usage.
-- **Tag naming**: Use lowercase with dashes (e.g., \`bug-fix\`, \`phase-2\`). Use \`merge_tags\` to consolidate duplicates (e.g., merge \`phase2\` into \`phase-2\`).
-- **\`merge_tags\` behavior**: Only updates non-deleted entries. Deleted entries retain their original tags.
-- **\`prStatus\` in entries**: Reflects PR state at entry creation time, not current state. Use \`get_github_pr\` for live status.
-- **\`restore_backup\` behavior**: Restores entire database state. Any recent changes (new entries, tag merges via \`merge_tags\`, relationships) are reverted. A pre-restore backup is automatically created for safety.
-
-## Semantic Search
-
-- **Indexing**: Entries are auto-indexed on creation (fire-and-forget). If index count drifts from DB count, use \`rebuild_vector_index\` or enable \`AUTO_REBUILD_INDEX=true\` for automatic reconciliation on server startup.
-- **Thresholds**: Default similarity threshold is 0.25. For broader matches, try 0.15-0.2. Higher values (0.4+) return only very close semantic matches. A quality floor of 0.5 is always enforced: if all results score below 0.5, a hint is included indicating results may be noise. The \`hint_on_empty\` flag (default true) only controls advisory hints for empty indexes and zero-match queries — the quality gate hint is always shown.
-
-## Search
-
-- **\`search_entries\` FTS5 query syntax**: Uses FTS5 full-text search with Porter stemmer. Phrase queries: \`"error handling"\`. Prefix: \`auth*\`. Boolean: \`deploy OR release\`, \`error NOT warning\`. Word-boundary matching ("log" matches "log" but not "catalog"). Results ranked by BM25 relevance. Falls back to LIKE substring matching for queries with unbalanced quotes or special characters.
-
-## Relationships & Analytics
-
-- **Causal relationship types**: Use \`blocked_by\` (A was blocked by B), \`resolved\` (A resolved B), \`caused\` (A caused B) for decision tracing and failure analysis. Visualizations use distinct arrow styles for causal types.
-- **Enhanced analytics**: \`get_statistics\` returns \`decisionDensity\` (significant entries per period), \`relationshipComplexity\` (avg relationships per entry), \`activityTrend\` (period-over-period growth %), and \`causalMetrics\` (counts for blocked_by/resolved/caused).
-- **Importance scores**: \`get_entry_by_id\` returns \`importance\` (0.0-1.0) and \`importanceBreakdown\` showing weighted components: significance (30%), relationships (35%), causal (20%), recency (15%). \`memory://significant\` sorts entries by importance.
-- **\`inactiveThresholdDays\`**: \`get_cross_project_insights\` includes \`inactiveThresholdDays: 7\` in output, documenting the inactive project classification cutoff.
-
-## GitHub Metadata
-
-- **GitHub metadata in entries**: Entry output includes 10 GitHub fields (\`issueNumber\`, \`issueUrl\`, \`prNumber\`, \`prUrl\`, \`prStatus\`, \`projectNumber\`, \`projectOwner\`, \`workflowRunId\`, \`workflowName\`, \`workflowStatus\`) in all tool responses.
-
-## Entry Operations
-
-- **\`delete_entry\` on soft-deleted**: \`delete_entry(id, permanent: true)\` works on previously soft-deleted entries. Returns \`success: false\` for nonexistent entries.
-
-## Team Database
-
-- **Team cross-database search**: \`search_entries\` and \`search_by_date_range\` automatically merge team DB results when \`TEAM_DB_PATH\` is configured. Results include a \`source\` field ("personal" or "team").
-- **Team vector search**: Team has its own isolated vector index. Use \`team_rebuild_vector_index\` if the team index drifts. \`team_semantic_search\` works identically to personal \`semantic_search\`.
-- **Team tools without \`TEAM_DB_PATH\`**: All 20 team tools return \`{ success: false, error: "Team collaboration is not configured..." }\` — no crash, no partial results.
-`

package/server.json

@@ -1,42 +0,0 @@
-{
-    "$schema": "https://static.modelcontextprotocol.io/schemas/2025-09-29/server.schema.json",
-    "name": "io.github.neverinfamous/memory-journal-mcp",
-    "title": "Memory Journal MCP",
-    "description": "Persistent knowledge graphs and intelligent context recall across AI threads",
-    "version": "6.1.2",
-    "packages": [
-        {
-            "registryType": "oci",
-            "identifier": "docker.io/writenotenow/memory-journal-mcp:v6.1.2",
-            "version": "6.1.2",
-            "transport": {
-                "type": "stdio"
-            }
-        }
-    ],
-    "keywords": [
-        "mcp",
-        "model-context-protocol",
-        "context-management",
-        "project-management",
-        "ai-assistant",
-        "knowledge-graph",
-        "developer-tools",
-        "git",
-        "github-projects",
-        "persistent-memory",
-        "thread-continuity",
-        "semantic-search"
-    ],
-    "author": {
-        "name": "Adamic.tech",
-        "email": "writenotenow@gmail.com"
-    },
-    "homepage": "https://github.com/neverinfamous/memory-journal-mcp",
-    "repository": {
-        "type": "git",
-        "url": "https://github.com/neverinfamous/memory-journal-mcp.git",
-        "source": "github"
-    },
-    "license": "MIT"
-}