jbrowse-plugin-msaview 2.2.8 → 2.3.2

package/dist/MsaViewPanel/blosum62.js

@@ -0,0 +1,628 @@
+const BLOSUM62 = {
+    A: {
+        A: 4,
+        R: -1,
+        N: -2,
+        D: -2,
+        C: 0,
+        Q: -1,
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+        L: -1,
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+        P: -1,
+        S: 1,
+        T: 0,
+        W: -3,
+        Y: -2,
+        V: 0,
+        B: -2,
+        Z: -1,
+        X: 0,
+        '*': -4,
+    },
+    R: {
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+        N: 0,
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+        C: -3,
+        Q: 1,
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+        W: -3,
+        Y: -2,
+        V: -3,
+        B: -1,
+        Z: 0,
+        X: -1,
+        '*': -4,
+    },
+    N: {
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+        R: 0,
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+        D: 1,
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+        H: 1,
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+        W: -4,
+        Y: -2,
+        V: -3,
+        B: 3,
+        Z: 0,
+        X: -1,
+        '*': -4,
+    },
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+        Y: -3,
+        V: -3,
+        B: 4,
+        Z: 1,
+        X: -1,
+        '*': -4,
+    },
+    C: {
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+        R: -3,
+        N: -3,
+        D: -3,
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+        E: -4,
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+        Y: -2,
+        V: -1,
+        B: -3,
+        Z: -3,
+        X: -2,
+        '*': -4,
+    },
+    Q: {
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+        B: 0,
+        Z: 3,
+        X: -1,
+        '*': -4,
+    },
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+        X: -1,
+        '*': -4,
+    },
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+        W: -2,
+        Y: -3,
+        V: -3,
+        B: -1,
+        Z: -2,
+        X: -1,
+        '*': -4,
+    },
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+        Y: 2,
+        V: -3,
+        B: 0,
+        Z: 0,
+        X: -1,
+        '*': -4,
+    },
+    I: {
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+        R: -3,
+        N: -3,
+        D: -3,
+        C: -1,
+        Q: -3,
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+        G: -4,
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+        W: -3,
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+        B: -3,
+        Z: -3,
+        X: -1,
+        '*': -4,
+    },
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+        V: 1,
+        B: -4,
+        Z: -3,
+        X: -1,
+        '*': -4,
+    },
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+        D: -1,
+        C: -3,
+        Q: 1,
+        E: 1,
+        G: -2,
+        H: -1,
+        I: -3,
+        L: -2,
+        K: 5,
+        M: -1,
+        F: -3,
+        P: -1,
+        S: 0,
+        T: -1,
+        W: -3,
+        Y: -2,
+        V: -2,
+        B: 0,
+        Z: 1,
+        X: -1,
+        '*': -4,
+    },
+    M: {
+        A: -1,
+        R: -1,
+        N: -2,
+        D: -3,
+        C: -1,
+        Q: 0,
+        E: -2,
+        G: -3,
+        H: -2,
+        I: 1,
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+        K: -1,
+        M: 5,
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+        P: -2,
+        S: -1,
+        T: -1,
+        W: -1,
+        Y: -1,
+        V: 1,
+        B: -3,
+        Z: -1,
+        X: -1,
+        '*': -4,
+    },
+    F: {
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+        R: -3,
+        N: -3,
+        D: -3,
+        C: -2,
+        Q: -3,
+        E: -3,
+        G: -3,
+        H: -1,
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+        L: 0,
+        K: -3,
+        M: 0,
+        F: 6,
+        P: -4,
+        S: -2,
+        T: -2,
+        W: 1,
+        Y: 3,
+        V: -1,
+        B: -3,
+        Z: -3,
+        X: -1,
+        '*': -4,
+    },
+    P: {
+        A: -1,
+        R: -2,
+        N: -2,
+        D: -1,
+        C: -3,
+        Q: -1,
+        E: -1,
+        G: -2,
+        H: -2,
+        I: -3,
+        L: -3,
+        K: -1,
+        M: -2,
+        F: -4,
+        P: 7,
+        S: -1,
+        T: -1,
+        W: -4,
+        Y: -3,
+        V: -2,
+        B: -2,
+        Z: -1,
+        X: -2,
+        '*': -4,
+    },
+    S: {
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+        R: -1,
+        N: 1,
+        D: 0,
+        C: -1,
+        Q: 0,
+        E: 0,
+        G: 0,
+        H: -1,
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+        L: -2,
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+        Y: -2,
+        V: -2,
+        B: 0,
+        Z: 0,
+        X: 0,
+        '*': -4,
+    },
+    T: {
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+        L: -1,
+        K: -1,
+        M: -1,
+        F: -2,
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+        W: -2,
+        Y: -2,
+        V: 0,
+        B: -1,
+        Z: -1,
+        X: 0,
+        '*': -4,
+    },
+    W: {
+        A: -3,
+        R: -3,
+        N: -4,
+        D: -4,
+        C: -2,
+        Q: -2,
+        E: -3,
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+        L: -2,
+        K: -3,
+        M: -1,
+        F: 1,
+        P: -4,
+        S: -3,
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+        W: 11,
+        Y: 2,
+        V: -3,
+        B: -4,
+        Z: -3,
+        X: -2,
+        '*': -4,
+    },
+    Y: {
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+        R: -2,
+        N: -2,
+        D: -3,
+        C: -2,
+        Q: -1,
+        E: -2,
+        G: -3,
+        H: 2,
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+        K: -2,
+        M: -1,
+        F: 3,
+        P: -3,
+        S: -2,
+        T: -2,
+        W: 2,
+        Y: 7,
+        V: -1,
+        B: -3,
+        Z: -2,
+        X: -1,
+        '*': -4,
+    },
+    V: {
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+        R: -3,
+        N: -3,
+        D: -3,
+        C: -1,
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+        E: -2,
+        G: -3,
+        H: -3,
+        I: 3,
+        L: 1,
+        K: -2,
+        M: 1,
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+        P: -2,
+        S: -2,
+        T: 0,
+        W: -3,
+        Y: -1,
+        V: 4,
+        B: -3,
+        Z: -2,
+        X: -1,
+        '*': -4,
+    },
+    B: {
+        A: -2,
+        R: -1,
+        N: 3,
+        D: 4,
+        C: -3,
+        Q: 0,
+        E: 1,
+        G: -1,
+        H: 0,
+        I: -3,
+        L: -4,
+        K: 0,
+        M: -3,
+        F: -3,
+        P: -2,
+        S: 0,
+        T: -1,
+        W: -4,
+        Y: -3,
+        V: -3,
+        B: 4,
+        Z: 1,
+        X: -1,
+        '*': -4,
+    },
+    Z: {
+        A: -1,
+        R: 0,
+        N: 0,
+        D: 1,
+        C: -3,
+        Q: 3,
+        E: 4,
+        G: -2,
+        H: 0,
+        I: -3,
+        L: -3,
+        K: 1,
+        M: -1,
+        F: -3,
+        P: -1,
+        S: 0,
+        T: -1,
+        W: -3,
+        Y: -2,
+        V: -2,
+        B: 1,
+        Z: 4,
+        X: -1,
+        '*': -4,
+    },
+    X: {
+        A: 0,
+        R: -1,
+        N: -1,
+        D: -1,
+        C: -2,
+        Q: -1,
+        E: -1,
+        G: -1,
+        H: -1,
+        I: -1,
+        L: -1,
+        K: -1,
+        M: -1,
+        F: -1,
+        P: -2,
+        S: 0,
+        T: 0,
+        W: -2,
+        Y: -1,
+        V: -1,
+        B: -1,
+        Z: -1,
+        X: -1,
+        '*': -4,
+    },
+    '*': {
+        A: -4,
+        R: -4,
+        N: -4,
+        D: -4,
+        C: -4,
+        Q: -4,
+        E: -4,
+        G: -4,
+        H: -4,
+        I: -4,
+        L: -4,
+        K: -4,
+        M: -4,
+        F: -4,
+        P: -4,
+        S: -4,
+        T: -4,
+        W: -4,
+        Y: -4,
+        V: -4,
+        B: -4,
+        Z: -4,
+        X: -4,
+        '*': 1,
+    },
+};
+export default BLOSUM62;
+//# sourceMappingURL=blosum62.js.map

package/dist/MsaViewPanel/blosum62.js.map

@@ -0,0 +1 @@
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package/dist/MsaViewPanel/components/LoadingBLAST.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { JBrowsePluginMsaViewModel } from '../model';
+import type { JBrowsePluginMsaViewModel } from '../model';
 declare const LoadingBLAST: ({ model, baseUrl, }: {
     model: JBrowsePluginMsaViewModel;
     baseUrl: string;

package/dist/MsaViewPanel/components/LoadingBLAST.js.map

@@ -1 +1 @@
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package/dist/MsaViewPanel/components/MsaViewPanel.d.ts

@@ -1,5 +1,5 @@
 import React from 'react';
-import { JBrowsePluginMsaViewModel } from '../model';
+import type { JBrowsePluginMsaViewModel } from '../model';
 declare const MsaViewPanel: ({ model, }: {
     model: JBrowsePluginMsaViewModel;
 }) => React.JSX.Element;

package/dist/MsaViewPanel/components/MsaViewPanel.js.map

@@ -1 +1 @@
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+{"version":3,"file":"MsaViewPanel.js","sourceRoot":"","sources":["../../../src/MsaViewPanel/components/MsaViewPanel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,eAAe,CAAA;AAEvC,OAAO,YAAY,MAAM,gBAAgB,CAAA;AAIzC,MAAM,YAAY,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACnD,KAAK,GAGN;IACC,MAAM,EAAE,WAAW,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAChD,OAAO,CACL,iCACG,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,EAAE,OAAO,EAAE,WAAW,CAAC,OAAO,GAAI,CAC7D,CAAC,CAAC,CAAC,iBAAiB,CAAC,CAAC,CAAC,CACtB,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE;QACzB,oBAAC,eAAe,IAAC,OAAO,EAAC,kBAAkB,EAAC,OAAO,EAAC,IAAI,GAAG,CACvD,CACP,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,YAAY,CAAA"}

package/dist/MsaViewPanel/doLaunchBlast.d.ts

@@ -1,4 +1,4 @@
-import { JBrowsePluginMsaViewModel } from './model';
+import type { JBrowsePluginMsaViewModel } from './model';
 export declare function doLaunchBlast({ self, }: {
     self: JBrowsePluginMsaViewModel;
 }): Promise<{

package/dist/MsaViewPanel/doLaunchBlast.js.map

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