grnsight 4.0.0 → 6.0.0

package/documents/manuscripts/peerj-computerscience-2016/revisions/GRNsight_PeerJ-CS_manuscript_2016_references_revised.rtf

@@ -1,385 +0,0 @@
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-. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Nucleic Acids Research}{\rtlch\fcs1 \af0\afs24 
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-\par \hich\af0\dbch\af31505\loch\f0 Alon U. 2007. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 An introduction to systems biology: design principles of biological circuits}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 . Boca Raton, FL: Chapman & Hall/CRC.
-\par \hich\af0\dbch\af31505\loch\f0 Bastian M., Heymann S., Jacomy M. 2009. Gephi: an open source software for exploring and manipulating networks. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 
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-\par \hich\af0\dbch\af31505\loch\f0 Borneman AR., Leigh-Bell JA., Y\hich\af0\dbch\af31505\loch\f0 u H., Bertone P., Gerstein M., Snyder M. 2006. Target hub proteins serve as master regulators of development in yeast. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 
-\i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Genes & Development}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  20:435\loch\af0\dbch\af31505\hich\f0 \endash \hich\af0\dbch\af31505\loch\f0 
-448. DOI: 10.1101/gad.1389306.
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-\hich\af0\dbch\af31505\loch\f0 : Data-Driven Documents. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 IEEE transa\hich\af0\dbch\af31505\loch\f0 ctions on visualization and computer graphics}{\rtlch\fcs1 
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-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid2752567\charrsid2752567 \hich\af0\dbch\af31505\loch\f0  DOI: }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid2752567\charrsid2752567 \hich\af0\dbch\af31505\loch\f0 10.1007/3-540-45848-4_59}{\rtlch\fcs1 
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-Brazas MD., Yamada JT., Ouellette BFF. 2010. Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 
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-\par \hich\af0\dbch\af31505\loch\f0 Brown E. 2014. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Web development with Node and Express}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 
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-\par }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Buchman AR., Kornberg RD. 1990. A yeast ARS-binding protein activates transcription synergistically in combination with other w\hich\af0\dbch\af31505\loch\f0 
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-\par }\pard \ltrpar\ql \fi-360\li360\ri0\sa160\sl480\slmult1\nowidctlpar\wrapdefault\faauto\rin0\lin360\itap0\pararsid11341892 {\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid2752567 \hich\af0\dbch\af31505\loch\f0 
-Card SK., Mackinlay JD., Shneiderman }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid2752567\charrsid2752567 \hich\af0\dbch\af31505\loch\f0 B. 1999. }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid2752567 
-\hich\af0\dbch\af31505\loch\f0 Chapte}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid2752567\charrsid2752567 \hich\af0\dbch\af31505\loch\f0 r 1: Information Visualization.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid2752567 
-\hich\af0\dbch\af31505\loch\f0  In }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid11341892\charrsid2752567 \hich\af0\dbch\af31505\loch\f0 Readings in Information Visualization: Using Vision to Think}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid11341892\charrsid2752567 \hich\af0\dbch\af31505\loch\f0 .  San Diego, California: Academic Press. ISBN: 978-1-5586-0533-6}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid11341892 
-\par }\pard \ltrpar\ql \fi-720\li720\ri0\sl480\slmult1\nowidctlpar\wrapdefault\faauto\rin0\lin720\itap0 {\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 
-Dahlquist KD., Fitzpatrick BG., Camacho ET., Entzminger SD., Wanner NC. 2015. Parameter Estimation for Gene Regulatory Networks from Microarray Data: Cold Shock Response in Saccharomyces ce\hich\af0\dbch\af31505\loch\f0 revisiae. }{\rtlch\fcs1 
-\ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Bulletin of Mathematical Biology}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  77:1457\loch\af0\dbch\af31505\hich\f0 \endash 
-\hich\af0\dbch\af31505\loch\f0 1492. DOI: 10.1007/s11538-015-0092-6.
-\par }\pard \ltrpar\ql \fi-360\li360\ri0\sa160\sl480\slmult1\nowidctlpar\wrapdefault\faauto\rin0\lin360\itap0\pararsid11341892 {\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 Dahlquist KD}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 .}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 , Fitzpatrick BG}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid13980161\charrsid13980161 .}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 , Dionisio JDN}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 .}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 Anguiano}{\rtlch\fcs1 \af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  NA.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Carrillo}{\rtlch\fcs1 
-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  JS.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Roque}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  TAM.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 , 
-\hich\af0\dbch\af31505\loch\f0 Varshneya}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  A.,}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 
-\hich\af0\dbch\af31505\loch\f0  Samdarshi}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  M.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 
-\hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Azinge}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  CE. 2016a.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medium-scale gene regulatory networks [v1; not peer reviewed]. }{\rtlch\fcs1 
-\ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 F1000Research}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  }{\rtlch\fcs1 \ab\af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 5}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 (ISCB Comm J):1637 (slides) }{\rtlch\fcs1 \af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid2752567\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 DOI}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 \hich\af0\dbch\af31505\loch\f0 :}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid2752567\charrsid13980161 \hich\af0\dbch\af31505\loch\f0  10.7490/f1000research.1112534.1}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid13980161 
-\par }\pard \ltrpar\ql \fi-360\li360\ri0\sa160\sl480\slmult1\nowidctlpar\wrapdefault\faauto\rin0\lin360\itap0\pararsid13980161 {\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 Dahlquist KD}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 .}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , Fitzpatrick BG}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid13980161\charrsid6225953 .}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , Dionisio JDN}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 .,}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 Anguiano
-\hich\af0\dbch\af31505\loch\f0  NA.\hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Carrillo\hich\af0\dbch\af31505\loch\f0  JS.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , }{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 Morris}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  TA., }{\rtlch\fcs1 \af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 Varshneya}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  A.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Williams}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  NE.}{\rtlch\fcs1 \af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Johnson}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  KG.}{\rtlch\fcs1 
-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Roque}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  TAM.}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Horstmann}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 
-\hich\af0\dbch\af31505\loch\f0  KM.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Samdarshi}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  M.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 ,\hich\af0\dbch\af31505\loch\f0  \hich\af0\dbch\af31505\loch\f0 Azinge}{\rtlch\fcs1 \af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  CE.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 Klein}{\rtlch\fcs1 
-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  BJ.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 , \hich\af0\dbch\af31505\loch\f0 O'Neil}{
-\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  MJ. 2016b.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  }{\rtlch\fcs1 \af0\afs24 
-\ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 GRNmap and GRNsight: open source software for dynamical systems modeling and visualization of medi\hich\af0\dbch\af31505\loch\f0 
-um-scale gene regulatory networks [v1; not peer reviewed]. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 F1000Research}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0  }{\rtlch\fcs1 \ab\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 5}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid11341892\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 (ISCB Comm J):1618 (poster) }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161\charrsid6225953 \hich\af0\dbch\af31505\loch\f0 DOI: \hich\af0\dbch\af31505\loch\f0 1
-\hich\af0\dbch\af31505\loch\f0 0.7490/f1000r\hich\af0\dbch\af31505\loch\f0 esearch.1112518.1}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid13980161 
-\par }{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Dionisio JDN., Dahlquist KD. 2008. Improving the computer science in bioinformatics through open source pedagogy. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 
-\i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 ACM SIGCSE Bulletin}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  40:115. DOI: 10.1145/1383602.1383\hich\af0\dbch\af31505\loch\f0 648.
-\par }\pard \ltrpar\ql \fi-720\li720\ri0\sl480\slmult1\nowidctlpar\wrapdefault\faauto\rin0\lin720\itap0 {\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 
-Franz M., Lopes CT., Huck G., Dong Y., Sumer O., Bader GD. 2016. Cytoscape.js: a graph theory library for visualisation and analysis. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 
-Bioinformatics (Oxford, England)}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  32:309\loch\af0\dbch\af31505\hich\f0 \endash \hich\af0\dbch\af31505\loch\f0 311. DOI: 10.1093/bioinformatics/btv557.
-\par \hich\af0\dbch\af31505\loch\f0 Gostner R., Baldacci B., Morine MJ.,\hich\af0\dbch\af31505\loch\f0  Priami C. 2014. Graphical Modeling Tools for Systems Biology. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 
-\hich\af0\dbch\af31505\loch\f0 ACM Computing Surveys}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  47:1\loch\af0\dbch\af31505\hich\f0 \endash \hich\af0\dbch\af31505\loch\f0 21. DOI: 10.1145/2633461.
-\par \hich\af0\dbch\af31505\loch\f0 Harbison CT., Gordon DB., Lee TI., Rinaldi NJ., Macisaac KD., Danford TW., Hannett NM., Tagne J-B., Reynolds DB., Yoo J., Jennings EG., Zeit\hich\af0\dbch\af31505\loch\f0 
-linger J., Pokholok DK., Kellis M., Rolfe PA., Takusagawa KT., Lander ES., Gifford DK., Fraenkel E., Young RA. 2004. Transcriptional regulatory code of a eukaryotic genome. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 
-\hich\af0\dbch\af31505\loch\f0 Nature}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  431:99\loch\af0\dbch\af31505\hich\f0 \endash \hich\af0\dbch\af31505\loch\f0 104. DOI: 10.1038/nature02800.
-\par \hich\af0\dbch\af31505\loch\f0 Ison J., Rapacki K., M\loch\af0\dbch\af31505\hich\f0 \'e9\hich\af0\dbch\af31505\loch\f0 nager H., Kala\loch\af0\dbch\af31505\hich\f0 \'9a\hich\af0\dbch\af31505\loch\f0 
- M., Rydza E., Chmura P., Anthon C., Beard N., Berka K., Bolser D., Booth T., Bretaudeau A., Brezovsky J., Casadio R., Cesareni G., Coppens F., Cornell M., Cuccuru G., Davidsen K., Vedova GD., Dogan T., Doppelt-Azeroual O., Emery L., Gasteiger E., Gatter 
-\hich\af0\dbch\af31505\loch\f0 T\hich\af0\dbch\af31505\loch\f0 ., Goldberg T., Grosjean M., Gr\loch\af0\dbch\af31505\hich\f0 \'fc\hich\af0\dbch\af31505\loch\f0 
-ning B., Helmer-Citterich M., Ienasescu H., Ioannidis V., Jespersen MC., Jimenez R., Juty N., Juvan P., Koch M., Laibe C., Li J-W., Licata L., Mareuil F., Mi}{\rtlch\fcs1 \af416\afs24 \ltrch\fcs0 \f416\fs24\insrsid4685461 
-\loch\af416\dbch\af31505\hich\f416 \'e8}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 eti}{\rtlch\fcs1 \af416\afs24 \ltrch\fcs0 \f416\fs24\insrsid4685461 \loch\af416\dbch\af31505\hich\f416 \'e6}{\rtlch\fcs1 
-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  I., Friborg RM., Moretti S., Morris C., M\loch\af0\dbch\af31505\hich\f0 \'f6\hich\af0\dbch\af31505\loch\f0 ller S., Nenadic A.\hich\af0\dbch\af31505\loch\f0 
-, Peterson H., Profiti G., Rice P., Romano P., Roncaglia P., Saidi R., Schafferhans A., Schw\loch\af0\dbch\af31505\hich\f0 \'e4\hich\af0\dbch\af31505\loch\f0 mmle V., Smith C., Sperotto MM., Stockinger H., Va}{\rtlch\fcs1 \af416\afs24 \ltrch\fcs0 
-\f416\fs24\insrsid4685461 \loch\af416\dbch\af31505\hich\f416 \'f8}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 ekov\loch\af0\dbch\af31505\hich\f0 \'e1\hich\af0\dbch\af31505\loch\f0 
- RS., Tosatto SCE., de la Torre V., Uva P., Via A., Yachdav G., Zambelli F., Vriend G., Rost B., Parkinson \hich\af0\dbch\af31505\loch\f0 H., L\loch\af0\dbch\af31505\hich\f0 \'f8\hich\af0\dbch\af31505\loch\f0 
-ngreen P., Brunak S. 2016. Tools and data services registry: a community effort to document bioinformatics resources. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Nucleic Acids Research}{\rtlch\fcs1 
-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  44:D38\loch\af0\dbch\af31505\hich\f0 \endash \hich\af0\dbch\af31505\loch\f0 47. DOI: 10.1093/nar/gkv1116.
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-,\hich\af0\dbch\af31505\loch\f0  Mons B. 2016. The FAIR Guiding Principles for scientific data management and stewardship. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 Scientific Data}{\rtlch\fcs1 
-\af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  3:160018. DOI: 10.1038/sdata.2016.18.
-\par \hich\af0\dbch\af31505\loch\f0 Wilson G., Aruliah DA., Brown CT., Chue Hong NP., Davis M., Guy RT., Haddock SHD., Huff KD., Mitchell IM., Plum\hich\af0\dbch\af31505\loch\f0 
-bley MD., Waugh B., White EP., Wilson P. 2014. Best practices for scientific computing. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 \i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 PLoS biology}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 
-\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  12:e1001745. DOI: 10.1371/journal.pbio.1001745.
-\par \hich\af0\dbch\af31505\loch\f0 Yachdav G., Goldberg T., Wilzbach S., Dao D., Shih I., Choudhary S., Crouch S., Franz M., Garc\loch\af0\dbch\af31505\hich\f0 \'ed\hich\af0\dbch\af31505\loch\f0 a A., Garc\loch\af0\dbch\af31505\hich\f0 \'ed
-\hich\af0\dbch\af31505\loch\f0 a\hich\af0\dbch\af31505\loch\f0  LJ., Gr\loch\af0\dbch\af31505\hich\f0 \'fc\hich\af0\dbch\af31505\loch\f0 
-ning BA., Inupakutika D., Sillitoe I., Thanki AS., Vieira B., Villaveces JM., Schneider MV., Lewis S., Pettifer S., Rost B., Corpas M. 2015. Anatomy of BioJS, an open source community for the life sciences. }{\rtlch\fcs1 \ai\af0\afs24 \ltrch\fcs0 
-\i\f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0 eLife}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 \hich\af0\dbch\af31505\loch\f0  4. DOI: 10.7554/eLife.07009.}{\rtlch\fcs1 \af0\afs24 \ltrch\fcs0 \f0\fs24\insrsid4685461 
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