grnsight 4.0.0 → 6.0.0

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Files changed (458) hide show
  1. package/.travis.yml +3 -1
  2. package/GRNsight - Beta.html +194 -0
  3. package/Gemfile.lock +259 -0
  4. package/README.md +2 -2
  5. package/_gh_pages/about.html +360 -45
  6. package/_gh_pages/assets/css/footer.css +3 -0
  7. package/_gh_pages/assets/css/main.css +28 -14
  8. package/_gh_pages/assets/images/21-genes_31-edges_Schade-data_estimation_output_binary-no-targetless-genes_sif.png +0 -0
  9. package/_gh_pages/assets/images/21-genes_31-edges_Schade-data_estimation_output_binary_sif.png +0 -0
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  14. package/_gh_pages/assets/images/21-genes_31-edges_Schade-data_input_binary-no-targetless-genes_sif.png +0 -0
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  16. package/_gh_pages/assets/images/21-genes_31-edges_Schade-data_input_concatenated-no-targetless-genes_sif.png +0 -0
  17. package/_gh_pages/assets/images/21-genes_31-edges_Schade-data_input_concatenated_sif.png +0 -0
  18. package/_gh_pages/assets/images/Choe-Shin_CMSI402-poster-session_20180430.jpg +0 -0
  19. package/_gh_pages/assets/images/Choe_SCCUR_2017.jpg +0 -0
  20. package/_gh_pages/assets/images/Dahlquist-Choe-Shin_CMSI402-poster-session_20180430.jpg +0 -0
  21. package/_gh_pages/assets/images/Dionisio-Dahlquist_GRNsight-shades_20170506.jpg +0 -0
  22. package/_gh_pages/assets/images/Klein_Samdarshi_TriBeta_2018_20180317.jpg +0 -0
  23. package/_gh_pages/assets/images/Shin_SCCUR_2017.jpg +0 -0
  24. package/{documents/manuscripts/peerj-computerscience-2016/figures/submitted-versions/Figure1_zoom145_900pix-wide.png → _gh_pages/assets/images/demo-3_network-sheet.png} +0 -0
  25. package/{documents/manuscripts/peerj-computerscience-2016/figures/submitted-versions/Figure2_zoom145_900pix-wide.png → _gh_pages/assets/images/demo-4_network-optimized-weights-sheet.png} +0 -0
  26. package/_gh_pages/assets/images/gene-pages-0.png +0 -0
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  30. package/_gh_pages/assets/images/grnsight2020.png +0 -0
  31. package/_gh_pages/assets/images/v3demo2-grid+nodecoloring.png +0 -0
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  34. package/_gh_pages/assets/js/ga-report.js +11 -11
  35. package/_gh_pages/assets/js/iframeResizer.min.js +9 -0
  36. package/_gh_pages/assets/js/main.js +43 -43
  37. package/_gh_pages/beta.html +29 -24
  38. package/_gh_pages/contact.html +31 -31
  39. package/_gh_pages/coverage/coverage.json +1 -0
  40. package/_gh_pages/coverage/coverage.raw.json +1 -0
  41. package/_gh_pages/coverage/lcov-report/base.css +223 -0
  42. package/_gh_pages/coverage/lcov-report/block-navigation.js +63 -0
  43. package/_gh_pages/coverage/lcov-report/controllers/additional-sheet-parser.js.html +330 -0
  44. package/_gh_pages/coverage/lcov-report/controllers/constants.js.html +243 -0
  45. package/_gh_pages/coverage/lcov-report/controllers/export-controller.js.html +285 -0
  46. package/_gh_pages/coverage/lcov-report/controllers/exporters/graphml.js.html +405 -0
  47. package/_gh_pages/coverage/lcov-report/controllers/exporters/index.html +110 -0
  48. package/_gh_pages/coverage/lcov-report/controllers/exporters/sif.js.html +150 -0
  49. package/_gh_pages/coverage/lcov-report/controllers/helpers.js.html +114 -0
  50. package/_gh_pages/coverage/lcov-report/controllers/import-controller.js.html +233 -0
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  53. package/_gh_pages/coverage/lcov-report/controllers/importers/sif.js.html +488 -0
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  55. package/_gh_pages/coverage/lcov-report/controllers/semantic-checker.js.html +810 -0
  56. package/_gh_pages/coverage/lcov-report/controllers/spreadsheet-controller.js.html +1779 -0
  57. package/_gh_pages/coverage/lcov-report/index.html +136 -0
  58. package/_gh_pages/coverage/lcov-report/prettify.css +1 -0
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  60. package/_gh_pages/coverage/lcov-report/server/controllers/additional-sheet-parser.js.html +330 -0
  61. package/_gh_pages/coverage/lcov-report/server/controllers/constants.js.html +243 -0
  62. package/_gh_pages/coverage/lcov-report/server/controllers/export-controller.js.html +285 -0
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  73. package/_gh_pages/coverage/lcov-report/server/controllers/semantic-checker.js.html +810 -0
  74. package/_gh_pages/coverage/lcov-report/server/controllers/spreadsheet-controller.js.html +1779 -0
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  77. package/_gh_pages/coverage/lcov-report/web-client/public/js/grnstate.js.html +225 -0
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  79. package/_gh_pages/coverage/lcov.info +49 -0
  80. package/_gh_pages/documentation.html +998 -320
  81. package/_gh_pages/documents/abstracts/SIGGRAPH 2017 Abstract/siggraph-abstract-review.aux +47 -0
  82. package/_gh_pages/documents/abstracts/SIGGRAPH 2017 Abstract/siggraph-abstract-review.bbl +73 -0
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  85. package/_gh_pages/documents/abstracts/SIGGRAPH 2017 Abstract/siggraph-abstract-review.out +7 -0
  86. package/_gh_pages/documents/abstracts/SIGGRAPH 2017 Abstract/siggraph-abstract-review.synctex.gz +0 -0
  87. package/_gh_pages/documents/manuscripts/peerj-computerscience-2016/revisions/GRNsight_PeerJ-CS_manuscript_2016_text-only_revised-Dondi.docx +0 -0
  88. package/_gh_pages/encryption/server.cert +21 -0
  89. package/_gh_pages/encryption/server.key +28 -0
  90. package/_gh_pages/favicon.ico +0 -0
  91. package/_gh_pages/index.html +45 -22
  92. package/_gh_pages/links.html +47 -28
  93. package/_gh_pages/news.html +103 -21
  94. package/_gh_pages/onlyfooter.html +78 -0
  95. package/_gh_pages/onlyheader.html +64 -0
  96. package/_gh_pages/onlysidebar.html +73 -0
  97. package/_gh_pages/package-lock.json +14048 -0
  98. package/_gh_pages/people.html +129 -40
  99. package/_gh_pages/privacy.html +23 -17
  100. package/_gh_pages/publications.html +75 -33
  101. package/_gh_pages/robots.txt +1 -0
  102. package/_gh_pages/sitemap.xml +87 -74
  103. package/_gh_pages/test-files/import-samples/attributes.graphml +40 -0
  104. package/_gh_pages/test-files/import-samples/port.graphml +32 -0
  105. package/_gh_pages/test-files/import-samples/simple.graphml +31 -0
  106. package/_gh_pages/web-client/public/js/grnsight.min.js +2347 -0
  107. package/_gh_pages/web-client/public/stylesheets/grnsight.css +443 -0
  108. package/coverage/coverage.json +1 -1
  109. package/coverage/lcov.info +1847 -1142
  110. package/database/README.md +1 -0
  111. package/database/network-database/README.md +44 -0
  112. package/database/network-database/schema.sql +24 -0
  113. package/database/network-database/scripts/filter_genes.py +76 -0
  114. package/database/network-database/scripts/generate_network.py +199 -0
  115. package/database/network-database/scripts/generate_sgd_network_from_yeastract_network.py +120 -0
  116. package/database/network-database/scripts/loader.py +78 -0
  117. package/package.json +20 -11
  118. package/server/app.js +7 -2
  119. package/server/config/config.js +12 -3
  120. package/server/controllers/additional-sheet-parser.js +292 -55
  121. package/server/controllers/constants.js +4 -37
  122. package/server/controllers/custom-workbook-controller.js +66 -0
  123. package/server/controllers/demo-workbooks.js +5973 -0
  124. package/server/controllers/export-constants.js +78 -0
  125. package/server/controllers/export-controller.js +4 -3
  126. package/server/controllers/exporters/graphml.js +15 -15
  127. package/server/controllers/exporters/sif.js +7 -7
  128. package/server/controllers/exporters/xlsx.js +110 -34
  129. package/server/controllers/expression-database-controller.js +19 -0
  130. package/server/controllers/expression-sheet-parser.js +170 -0
  131. package/server/controllers/graphml-constants.js +0 -17
  132. package/server/controllers/helpers.js +25 -1
  133. package/server/controllers/import-controller.js +2 -2
  134. package/server/controllers/importers/graphml.js +17 -20
  135. package/server/controllers/importers/sif.js +22 -18
  136. package/server/controllers/network-database-controller.js +18 -0
  137. package/server/controllers/network-sheet-parser.js +307 -0
  138. package/server/controllers/semantic-checker.js +30 -162
  139. package/server/controllers/sif-constants.js +36 -0
  140. package/server/controllers/spreadsheet-controller.js +277 -425
  141. package/server/controllers/workbook-constants.js +521 -0
  142. package/server/dals/expression-dal.js +122 -0
  143. package/server/dals/network-dal.js +96 -0
  144. package/test/additional-sheet-parser-tests.js +147 -38
  145. package/test/api-tests.js +3 -6
  146. package/test/errors-adjacency-matrix-modifications.js +30 -29
  147. package/test/errors-graph-tests.js +4 -4
  148. package/test/errors-sheet-modifications.js +10 -2
  149. package/test/export-tests.js +187 -60
  150. package/test/expression-data-import-tests.js +113 -0
  151. package/test/grnstate-tests.js +8 -2
  152. package/test/import-graphml-tests.js +59 -40
  153. package/test/import-sif-tests.js +50 -37
  154. package/test/test.js +554 -91
  155. package/test/warnings-adjacency-matrix-modifications.js +8 -7
  156. package/test-files/additional-sheet-test-files/optimization-diagnostics-default.xlsx +0 -0
  157. package/test-files/additional-sheet-test-files/optimization-diagnostics-extraneous-data.xlsx +0 -0
  158. package/test-files/additional-sheet-test-files/optimization-diagnostics-incorrect-MSE-gene-header.xlsx +0 -0
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  163. package/test-files/additional-sheet-test-files/optimization-diagnostics-missing-MSE-data.xlsx +0 -0
  164. package/test-files/additional-sheet-test-files/optimization-diagnostics-missing-column-headers.xlsx +0 -0
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  166. package/test-files/additional-sheet-test-files/optimization-diagnostics-unknown-parameter.xlsx +0 -0
  167. package/test-files/additional-sheet-test-files/optimization-parameters-default.xlsx +0 -0
  168. package/test-files/additional-sheet-test-files/optimization-parameters-incorrect-headers.xlsx +0 -0
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  170. package/test-files/additional-sheet-test-files/optimization-parameters-missing-headers.xlsx +0 -0
  171. package/test-files/additional-sheet-test-files/optimization-parameters-unknown-parameter.xlsx +0 -0
  172. package/test-files/additional-sheet-test-files/two-column-sheets-extraneous-data.xlsx +0 -0
  173. package/test-files/additional-sheet-test-files/two-column-sheets-incorrect-cell-A1.xlsx +0 -0
  174. package/test-files/additional-sheet-test-files/two-column-sheets-incorrect-column-header.xlsx +0 -0
  175. package/test-files/additional-sheet-test-files/two-column-sheets-invalid-gene-length.xlsx +0 -0
  176. package/test-files/additional-sheet-test-files/two-column-sheets-invalid-gene-type.xlsx +0 -0
  177. package/test-files/additional-sheet-test-files/two-column-sheets-invalid-value.xlsx +0 -0
  178. package/test-files/additional-sheet-test-files/two-column-sheets-missing-column-header.xlsx +0 -0
  179. package/test-files/additional-sheet-test-files/two-column-sheets-special-character.xlsx +0 -0
  180. package/test-files/adjacency-matrix-modifications/asymmetric-gene-order-input.xlsx +0 -0
  181. package/test-files/adjacency-matrix-modifications/asymmetric-gene-order-output.xlsx +0 -0
  182. package/test-files/adjacency-matrix-modifications/extra-column-adjacent-input.xlsx +0 -0
  183. package/test-files/adjacency-matrix-modifications/extra-column-adjacent-output.xlsx +0 -0
  184. package/test-files/adjacency-matrix-modifications/extra-column-end-of-sheet-input.xlsx +0 -0
  185. package/test-files/adjacency-matrix-modifications/extra-column-end-of-sheet-output.xlsx +0 -0
  186. package/test-files/adjacency-matrix-modifications/extra-data-random-cell-both-output.xlsx +0 -0
  187. package/test-files/adjacency-matrix-modifications/extra-data-random-cell-network-only-input.xlsx +0 -0
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  189. package/test-files/adjacency-matrix-modifications/extra-data-random-cell-network-optimized-only-output.xlsx +0 -0
  190. package/test-files/adjacency-matrix-modifications/extra-row-end-of-sheet-input.xlsx +0 -0
  191. package/test-files/adjacency-matrix-modifications/extra-row-end-of-sheet-output.xlsx +0 -0
  192. package/test-files/adjacency-matrix-modifications/incorrect-network-cell-A1.xlsx +0 -0
  193. package/test-files/adjacency-matrix-modifications/missing-column-end-input.xlsx +0 -0
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  196. package/test-files/adjacency-matrix-modifications/missing-data-output.xlsx +0 -0
  197. package/test-files/adjacency-matrix-modifications/missing-row-end-input.xlsx +0 -0
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  199. package/test-files/adjacency-matrix-modifications/missing-row-middle-input.xlsx +0 -0
  200. package/test-files/adjacency-matrix-modifications/missing-row-middle-output.xlsx +0 -0
  201. package/test-files/adjacency-matrix-modifications/missing-value-bottom-corner-input.xlsx +0 -0
  202. package/test-files/adjacency-matrix-modifications/missing-value-bottom-corner-output.xlsx +0 -0
  203. package/test-files/adjacency-matrix-modifications/value-replaced-w-spaces-both-output.xlsx +0 -0
  204. package/test-files/adjacency-matrix-modifications/value-replaced-w-spaces-net-only-input.xlsx +0 -0
  205. package/test-files/adjacency-matrix-modifications/value-replaced-w-spaces-net-op-only-output.xlsx +0 -0
  206. package/test-files/adjacency-matrix-modifications/value-replaced/342/200/223w-spaces-net-only-output.xlsx +0 -0
  207. package/test-files/demo-files/15-genes_28-edges_db5_Dahlquist-data_estimation_output.xlsx +0 -0
  208. package/test-files/demo-files/15-genes_28-edges_db5_Dahlquist-data_input.xlsx +0 -0
  209. package/test-files/expression-data-test-sheets/expression_sheet_correct_numbering.xlsx +0 -0
  210. package/test-files/expression-data-test-sheets/expression_sheet_different_number_of_columns.xlsx +0 -0
  211. package/test-files/expression-data-test-sheets/expression_sheet_empty_column.xlsx +0 -0
  212. package/test-files/expression-data-test-sheets/expression_sheet_empty_row.xlsx +0 -0
  213. package/test-files/expression-data-test-sheets/expression_sheet_erroneous_data.xlsx +0 -0
  214. package/test-files/expression-data-test-sheets/expression_sheet_extra_gene_name.xlsx +0 -0
  215. package/test-files/expression-data-test-sheets/expression_sheet_incorrectly_ordered_time_points.xlsx +0 -0
  216. package/test-files/expression-data-test-sheets/expression_sheet_mismatched_case_gene_names.xlsx +0 -0
  217. package/test-files/expression-data-test-sheets/expression_sheet_mismatched_gene_names.xlsx +0 -0
  218. package/test-files/expression-data-test-sheets/expression_sheet_missing_column_header.xlsx +0 -0
  219. package/test-files/expression-data-test-sheets/expression_sheet_missing_data_error.xlsx +0 -0
  220. package/test-files/expression-data-test-sheets/expression_sheet_missing_data_ok.xlsx +0 -0
  221. package/test-files/expression-data-test-sheets/expression_sheet_missing_data_ok_export_exact.xlsx +0 -0
  222. package/test-files/expression-data-test-sheets/expression_sheet_missing_gene_name.xlsx +0 -0
  223. package/test-files/expression-data-test-sheets/expression_sheet_name_not_in_optparams.xlsx +0 -0
  224. package/test-files/expression-data-test-sheets/expression_sheet_name_not_present.xlsx +0 -0
  225. package/test-files/expression-data-test-sheets/expression_sheet_negative_time_points.xlsx +0 -0
  226. package/test-files/expression-data-test-sheets/expression_sheet_non_numerical_time_points.xlsx +0 -0
  227. package/test-files/expression-data-test-sheets/expression_sheet_not_existing.xlsx +0 -0
  228. package/test-files/expression-data-test-sheets/expression_sheet_wrong_id_label.xlsx +0 -0
  229. package/test-files/expression-data-test-sheets/expression_sheet_wrong_order_gene_names.xlsx +0 -0
  230. package/test-files/expression-data-test-sheets/expression_sheet_wrong_sheet_name_case.xlsx +0 -0
  231. package/test-files/expression-data-test-sheets/expression_sheet_wrong_sheet_name_convention.xlsx +0 -0
  232. package/test-files/gene-name-modifications/NaN-as-gene-name-input.xlsx +0 -0
  233. package/test-files/gene-name-modifications/NaN-as-gene-name-output.xlsx +0 -0
  234. package/test-files/gene-name-modifications/mismatched-case-related-input.xlsx +0 -0
  235. package/test-files/gene-name-modifications/mismatched-case-related-output.xlsx +0 -0
  236. package/test-files/gene-name-modifications/mismatched-case-unrelated-input.xlsx +0 -0
  237. package/test-files/gene-name-modifications/mismatched-case-unrelated-output.xlsx +0 -0
  238. package/test-files/graph-tests/different-sized-networks/{80-genes-0-edges.xlsx → 134-genes-0-edges.xlsx} +0 -0
  239. package/test-files/graph-tests/different-sized-networks/{45-genes-max-edges.xlsx → 44-source-genes-45-target-genes-max-edges.xlsx} +0 -0
  240. package/test-files/graph-tests/different-sized-networks/{1-gene-0-edges.xlsx → unused-files/1-gene-0-edges.xlsx} +0 -0
  241. package/test-files/graph-tests/different-sized-networks/{1-gene-1-edges.xlsx → unused-files/1-gene-1-edges.xlsx} +0 -0
  242. package/test-files/graph-tests/different-sized-networks/{10-genes-50-edges.xlsx → unused-files/10-genes-50-edges.xlsx} +0 -0
  243. package/test-files/graph-tests/different-sized-networks/{10-genes-90-edges.xlsx → unused-files/10-genes-90-edges.xlsx} +0 -0
  244. package/test-files/graph-tests/different-sized-networks/{100-genes-0-edges.xlsx → unused-files/100-genes-0-edges.xlsx} +0 -0
  245. package/test-files/graph-tests/different-sized-networks/{110-genes-0-edges.xlsx → unused-files/110-genes-0-edges.xlsx} +0 -0
  246. package/test-files/graph-tests/different-sized-networks/{120-genes-0-edges.xlsx → unused-files/120-genes-0-edges.xlsx} +0 -0
  247. package/test-files/graph-tests/different-sized-networks/{130-genes-0-edges.xlsx → unused-files/130-genes-0-edges.xlsx} +0 -0
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- ## GRNsight Client Side Testing Overview
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- Last Updated: 2018-04-25
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-
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- | Included in Testing Protocol | GRNsight Option | User Action | Result |
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- | --------------- | ------ | ------- | ------ |
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- |NO | Load Graph|None | GRNsight should have no graph in the viewport|
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- |NO | Load Graph|Dropdown Menu: File -> Open | GRNsight should lay out a network graph from the Excel workbook if there are no errors in the file|
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- |NO | Load Graph|Dropdown Menu: File -> Import SIF | GRNsight should lay out a network graph from the SIF file if there are no errors in the file|
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- |NO | Load Graph|Dropdown Menu: File -> Import GraphML | GRNsight should lay out a network graph from the GraphML file if there are no errors in the file|
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- |NO | Load Graph|Dropdown Menu: Demo -> Demo #1 | GRNsight should lay out an unweighted network graph from Demo #1|
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- |NO | Load Graph|Dropdown Menu: Demo -> Demo #2 | GRNsight should lay out a weighted network graph from Demo #2|
12
- |NO | Load Graph|Dropdown Menu: Demo -> Demo #3 | GRNsight should lay out an unweighted network graph from Demo #3|
13
- |NO | Load Graph|Dropdown Menu: Demo -> Demo #4 | GRNsight should lay out a weighted network graph from Demo #4|
14
- |NO | Dropdown Menu: File -> Reload|Select | The graph should center, zoom to 100%, and reapply the force graph parameters|
15
- |NO | Dropdown Menu: File -> Export Data|Select "To Unweighted SIF" | GRNsight should export an unweighted SIF file from the graph currently loaded|
16
- |NO | Dropdown Menu: File -> Export Data|Select "To Weighted SIF" | GRNsight should export a weighted SIF file from the graph currently loaded|
17
- |NO | Dropdown Menu: File -> Export Data|Select "To Unweighted GraphML" | GRNsight should export an unweighted GraphML file from the graph currently loaded|
18
- |NO | Dropdown Menu: File -> Export Data|Select "To Weighted GraphML" | GRNsight should export a weighted GraphML file from the graph currently loaded|
19
- |NO | Dropdown Menu: File -> Print|Select | GRNsight should open the Print Dialogue Box|
20
- |NO | Dropdown Menu: Help|Select "Getting Started" | GRNsight should open the GRNsight documentation page|
21
- |NO | Dropdown Menu: Help|Select "GRNsight Wiki" | GRNsight should open the GRNsight wiki page|
22
- |NO | Dropdown Menu: Help|Select "About GRNsight" | GRNsight should open the About GRNsight page|
23
- |NO | Sidebar Menu: Force Graph Parameter Sliders|Keep at Default Values | The graph should be laid out according to the default values of the force graph parameter sliders|
24
- |NO | Sidebar Menu: Force Graph Parameter Sliders|Decrease Link Distance | The graph's edges should visibly decrease in length if Lock Force Graph Parameters is unchecked|
25
- |NO | Sidebar Menu: Force Graph Parameter Sliders|Increase Link Distance | The graph's edges should visibly increase in length if Lock Force Graph Parameters is unchecked|
26
- |NO | Sidebar Menu: Force Graph Parameter Sliders|Increase Charge | The graph's nodes should visibly increase attraction to each other if Lock Force Graph Parameters is unchecked|
27
- |NO | Sidebar Menu: Force Graph Parameter Sliders|Decrease Charge | The graph's nodes should visibly decrease attraction to each other if Lock Force Graph Parameters is unchecked|
28
- |NO | Sidebar Menu: Lock Force Graph Parameters Checkbox|Check | The Force Graph Parameter sliders should be disabled.|
29
- |NO | Sidebar Menu: Lock Force Graph Parameters Checkbox|Uncheck | The Force Graph Parameter sliders should be enabled.|
30
- |NO | Sidebar Menu: Reset Force Graph Parameters Button|Click | The Force Graph Parameter sliders should revert to the default values, if Lock Force Graph Parameters is unchecked.|
31
- |NO | Sidebar Menu: Undo Reset Button|Click | The Force Graph Parameter sliders should return to the values they had before the Undo Reset button (or menu item) was selected, if the Undo Reset button is enabled.|
32
- |NO | Sidebar Menu: Restrict Graph to Viewport Checkbox|Check | The graph bounding box should always be contained within the viewport.|
33
- |NO | Sidebar Menu: Restrict Graph to Viewport Checkbox|Uncheck | The graph bounding box should be allowed to extend past the viewport|
34
- |NO | Sidebar Menu: Viewport Size|Keep as Detected | Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.|
35
- |NO | Sidebar Menu: Viewport Size|Select "Small" | The viewport size should be set to small|
36
- |NO | Sidebar Menu: Viewport Size|Select "Medium" | The viewport size should be set to medium|
37
- |NO | Sidebar Menu: Viewport Size|Select "Large" | The viewport size should be set to large|
38
- |NO | Sidebar Menu: Viewport Size|Select "Fit to Window" | The viewport size should automatically be set to the size of the browser window|
39
- |NO | Dropdown Menu: Edge|Select "Format edges based on optimized weight parameters" | GRNsight should format edges based on optimized weight parameters|
40
- |NO | Dropdown Menu: Edge|Select "Default to black edges with regular arrowheads" | GRNsight should default to black edges with regular arrowheads|
41
- |NO | Sidebar Menu: Hide/Show Edge Weights|Select "Show With Mouse Over" | A single edge weight should display when user mouses over a single edge.|
42
- |NO | Sidebar Menu: Hide/Show Edge Weights|Select "Always Show Edge Weights" | All edge weights should always be visible.|
43
- |NO | Sidebar Menu: Hide/Show Edge Weights|Select "Never Show Edge Weights" | No edge weights should be visible.|
44
- |NO | Dropdown Menu: Edge -> Hide/Show Edge Weights|Check "Show With Mouse Over" | A single edge weight should display when user mouses over a single edge.|
45
- |NO | Dropdown Menu: Edge -> Hide/Show Edge Weights|Check "Always Show Edge Weights" | All edge weights should always be visible.|
46
- |NO | Dropdown Menu: Edge -> Hide/Show Edge Weights|Check "Never Show Edge Weights" | No edge weights should be visible.|
47
- |NO | Sidebar Menu: Edge Weight Normalization Factor|Enter a Number in the Box and Click "Set Factor" button | The graph should reload with the new normalization factor applied to its edge weight thicknesses|
48
- |NO | Dropdown Menu: Edge -> Edge Weight Normalization Factor|Enter a Number in the Box and Press Enter | The graph should reload with the new normalization factor applied to its edge weight thicknesses|
49
- |NO | Sidebar Menu: Reset Factor Button|Click | The graph should reset to its default normalization factor and reload the graph|
50
- |NO | Dropdown Menu: Edge -> Reset Edge Weight Normalization|Click | The graph should reset to its default normalization factor and reload the graph|
51
- |NO | Sidebar Menu: Gray Threshold Slider|Change the Grey Threshold Value | The graph should reload, with edges that fall below the threshold value colored gray|
52
- |NO | Dropdown Menu: Edge -> Gray Threshold Input Box|Change the Grey Threshold Value and Press Enter | The graph should reload, with edges that fall below the threshold value colored gray|
53
- |NO | Sidebar Menu: Show Grey Edges as Dashed Checkbox|Uncheck | The graph should show gray lines as solid lines|
54
- |NO | Sidebar Menu: Show Grey Edges as Dashed Checkbox|Check | The graph should show gray lines as dashed lines|
55
- |NO | Dropdown Menu: Edge -> Show Grey Edges as Dashed|Uncheck | The graph should show gray lines as solid lines|
56
- |NO | Dropdown Menu: Edge -> Show Grey Edges as Dashed|Check | The graph should show gray lines as dashed lines|
57
- |NO | Viewport Menu: D-Pad Control|Click Right Arrow | The graph should shift to the left, if "Restrict Graph to Viewport" is Unchecked.|
58
- |NO | Viewport Menu: D-Pad Control|Click Left Arrow | The graph should shift to the right, if "Restrict Graph to Viewport" is Unchecked.|
59
- |NO | Viewport Menu: D-Pad Control|Click Up Arrow | The graph should shift down, if "Restrict Graph to Viewport" is Unchecked.|
60
- |NO | Viewport Menu: D-Pad Control|Click Down Arrow | The graph should shift up, if "Restrict Graph to Viewport" is Unchecked.|
61
- |NO | Viewport Menu: D-Pad Control|Click Center Button | The graph should move to the center of the bounding box (note that it is not the same thing as the viewport, if "Restrict Graph to Viewport" is Unchecked.|
62
- |NO | Viewport Menu: Zoom Slider|Increase Zoom Level | The graph should zoom in (get larger)|
63
- |NO | Viewport Menu: Zoom Slider|Decrease Zoom Level | The graph should zoom out (get smaller)|
64
- |NO | Sidebar Menu: Top Dataset|Keep Default Selection | The top half of each node should be colored using data from the first expression dataset detected in the input workbook, if expression data sheets are present in input workbook|
65
- |NO | Sidebar Menu: Top Dataset|Select Top Dataset from Dropdown List | The top half of each node should be colored using data from the selected dataset, if expression data sheets are present in input workbook|
66
- |NO | Dropdown Menu: Node -> Select Top Dataset|Keep Default Selection | The top half of each node should be colored using data from the first expression dataset detected in the input workbook, if expression data sheets are present in input workbook|
67
- |NO | Dropdown Menu: Node -> Select Top Dataset|Check New Top Dataset from Dropdown List | The top half of each node should be colored using data from the selected dataset, if expression data sheets are present in input workbook|
68
- |NO | Sidebar Menu: Bottom Dataset|Keep Default Selection | The bottom half of each node should be colored using data from the same dataset as the top dataset, if expression data sheets are present in input workbook|
69
- |NO | Sidebar Menu: Bottom Dataset|Select Bottom Dataset from Dropdown List | The bottom half of each node should be colored using data from the selected dataset, if expression data sheets are present in input workbook|
70
- |NO | Dropdown Menu: Node -> Select Bottom Dataset|Keep Default Selection | The bottom half of each node should be colored using data from the same dataset as the top dataset, if expression data sheets are present in input workbook|
71
- |NO | Dropdown Menu: Node -> Select Bottom Dataset|Check New Bottom Dataset from Dropdown List | The bottom half of each node should be colored using data from the selected dataset, if expression data sheets are present in input workbook|
72
- |NO | Sidebar Menu: Log Fold Change Max Value|Keep Default Value | The node coloring visualization's color intensity should default to having a Log Fold Change Max Value of 3, if expression data sheets are present in input workbook|
73
- |NO | Sidebar Menu: Log Fold Change Max Value|Increase Log Fold Change Max Value | The node coloring visualization's color intensity should decrease, if expression data sheets are present in input workbook|
74
- |NO | Sidebar Menu: Log Fold Change Max Value|Decrease Log Fold Change Max Value | The node coloring visualization's color intensity should increase, if expression data sheets are present in input workbook|
75
- |NO | Dropdown Menu: Node -> Log Fold Change Max Value|Keep Default Value | The node coloring visualization's color intensity should default to having a Log Fold Change Max Value of 3, if expression data sheets are present in input workbook|
76
- |NO | Dropdown Menu: Node -> Log Fold Change Max Value|Increase Log Fold Change Max Value | The node coloring visualization's color intensity should decrease, if expression data sheets are present in input workbook|
77
- |NO | Dropdown Menu: Node -> Log Fold Change Max Value|Decrease Log Fold Change Max Value | The node coloring visualization's color intensity should increase, if expression data sheets are present in input workbook|
78
- |NO | Sidebar Menu: Average Replicates Values (Top Dataset)|Check | GRNsight should average replicate values for top dataset, if expression data sheets are present in input workbook|
79
- |NO | Sidebar Menu: Average Replicates Values (Top Dataset)|Uncheck | GRNsight should not average replicate values for top dataset, if expression data sheets are present in input workbook|
80
- |NO | Dropdown Menu: Node -> Average Replicates Values (Top Dataset)|Check | GRNsight should average replicate values for top dataset, if expression data sheets are present in input workbook|
81
- |NO | Dropdown Menu: Node -> Average Replicates Values (Top Dataset)|Uncheck | GRNsight should not average replicate values for top dataset, if expression data sheets are present in input workbook|
82
- |NO | Sidebar Menu: Average Replicates Values (Bottom Dataset)|Check | GRNsight should average replicate values for bottom dataset, if expression data sheets are present in input workbook|
83
- |NO | Sidebar Menu: Average Replicates Values (Bottom Dataset)|Uncheck | GRNsight should not average replicate values for bottom dataset, if expression data sheets are present in input workbook|
84
- |NO | Dropdown Menu: Node -> Average Replicates Values (Bottom Dataset)|Check | GRNsight should average replicate values for bottom dataset, if expression data sheets are present in input workbook|
85
- |NO | Dropdown Menu: Node -> Average Replicates Values (Bottom Dataset)|Uncheck | GRNsight should not average replicate values for bottom dataset, if expression data sheets are present in input workbook|
86
- |NO | Sidebar Menu: Node Coloring Toggle Button|Click | Node coloring should toggle between on and off, with default being on and button text should toggle between 'Enable Node Coloring' and 'Disable Node Coloring', if expression data sheets are present in input workbook|
87
- |YES | Dropdown Menu: Node -> Disable Node Coloring|Check | Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook|
88
- |YES | Dropdown Menu: Node -> Disable Node Coloring|Uncheck | Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook|
89
- |YES | Sidebar Menu: Grid Layout|Keep at Default | The graph should default to force graph layout|
90
- |YES | Sidebar Menu: Grid Layout|Click Grid Layout Button | The graph should change to grid layout|
91
- |YES | Sidebar Menu: Grid Layout|Click Force Graph Layout Button | The graph should change to force graph layout|
92
- |YES | Dropdown Menu: View -> Viewport Size|Keep as Detected | Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.|
93
- |YES | Dropdown Menu: View -> Viewport Size|Check "Small" | The viewport size should be set to small|
94
- |YES | Dropdown Menu: View -> Viewport Size|Check "Medium" | The viewport size should be set to medium|
95
- |YES | Dropdown Menu: View -> Viewport Size|Check "Large" | The viewport size should be set to large|
96
- |YES | Dropdown Menu: View -> Viewport Size|Check "Fit to Window" | The viewport size should automatically be set to the size of the browser window|
97
- |YES | Dropdown Menu: View -> Restrict Graph to Viewport|Check | The viewport should always be contained within the viewport.|
98
- |YES | Dropdown Menu: View -> Restrict Graph to Viewport|Uncheck | The viewport should be allowed to extend past the viewport|
99
- |NO | Dropdown Menu: View -> Zoom|Enter Zoom Value, then Press Enter | The viewport should should zoom according to the value|
100
- |NO | Dropdown Menu: Layout -> Graph Options|Keep at Default | The graph should be in force graph layout by default|
101
- |NO | Dropdown Menu: Layout -> Graph Options|Grid Layout | The graph should apply grid layout|
102
- |NO | Dropdown Menu: Layout -> Graph Options|Force Graph | The graph should apply force graph layout|
103
- |NO | Dropdown Menu: Layout -> Lock Force Graph Parameters|Check "Lock Force Graph Parameters" | The Force Graph Parameter sliders should be disabled.|
104
- |NO | Dropdown Menu: Layout -> Lock Force Graph Parameters|Uncheck "Lock Force Graph Parameters" | The Force Graph Parameter sliders should be enabled.|
105
- |NO | Dropdown Menu: Layout -> Reset Force Graph Parameters|Click "Reset Force Graph Parameters" | The force graph parameters should revert to the default values, if Lock Force Graph Parameters is unchecked|
106
- |NO | Dropdown Menu: Layout -> Undo Reset|Click "Undo Reset" | The force graph parameters should return to the values they had before the Undo Reset button (or menu item) was selected, if Undo Reset is enabled.|
107
- |NO | Dropdown Menu: Layout -> Link Distance|Input Value, then Press Enter | The graph's edges should visibly change in length to the value entered if Lock Force Graph Parameters is unchecked|
108
- |NO | Dropdown Menu: Layout -> Charge|Input Value, then Press Enter | The graph's nodes should visibly change it's level of attraction to each other to the value entered if Lock Force Graph Parameters is unchecked|
109
-
110
- ## GRNsight Function Availability Table
111
-
112
- | GRNsight Function | No Graph Loaded | Weighted Graph Loaded | Unweighted Graph Loaded |
113
- | ---------------- | --------------- | ----------------------- | ---------------------- |
114
- | Load Graph - None | YES | YES | YES |
115
- | Load Graph - Dropdown Menu: File -> Open | YES | YES | YES |
116
- | Load Graph - Dropdown Menu: File -> Import SIF | YES | YES | YES |
117
- | Load Graph - Dropdown Menu: File -> Import GraphML | YES | YES | YES |
118
- | Load Graph - Dropdown Menu: Demo -> Demo #1 | YES | YES | YES |
119
- | Load Graph - Dropdown Menu: Demo -> Demo #2 | YES | YES | YES |
120
- | Load Graph - Dropdown Menu: Demo -> Demo #3 | YES | YES | YES |
121
- | Load Graph - Dropdown Menu: Demo -> Demo #4 | YES | YES | YES |
122
- | Dropdown Menu: File -> Reload - Select | NO | YES | YES |
123
- | Dropdown Menu: File -> Export Data - Select "To Unweighted SIF" | NO | YES | YES |
124
- | Dropdown Menu: File -> Export Data - Select "To Weighted SIF" | NO | YES | YES |
125
- | Dropdown Menu: File -> Export Data - Select "To Unweighted GraphML" | NO | YES | YES |
126
- | Dropdown Menu: File -> Export Data - Select "To Weighted GraphML" | NO | YES | YES |
127
- | Dropdown Menu: File -> Print - Select | NO | YES | YES |
128
- | Dropdown Menu: Help - Select "Getting Started" | YES | YES | YES |
129
- | Dropdown Menu: Help - Select "GRNsight Wiki" | YES | YES | YES |
130
- | Dropdown Menu: Help - Select "About GRNsight" | YES | YES | YES |
131
- | Sidebar Menu: Force Graph Parameter Sliders - Keep at Default Values | YES | YES | YES |
132
- | Sidebar Menu: Force Graph Parameter Sliders - Decrease Link Distance | YES | YES | YES |
133
- | Sidebar Menu: Force Graph Parameter Sliders - Increase Link Distance | YES | YES | YES |
134
- | Sidebar Menu: Force Graph Parameter Sliders - Increase Charge | YES | YES | YES |
135
- | Sidebar Menu: Force Graph Parameter Sliders - Decrease Charge | YES | YES | YES |
136
- | Sidebar Menu: Lock Force Graph Parameters Checkbox - Check | YES | YES | YES |
137
- | Sidebar Menu: Lock Force Graph Parameters Checkbox - Uncheck | YES | YES | YES |
138
- | Sidebar Menu: Reset Force Graph Parameters Button - Click | YES | YES | YES |
139
- | Sidebar Menu: Undo Reset Button - Click | YES | YES | YES |
140
- | Sidebar Menu: Restrict Graph to Viewport Checkbox - Check | YES | YES | YES |
141
- | Sidebar Menu: Restrict Graph to Viewport Checkbox - Uncheck | YES | YES | YES |
142
- | Sidebar Menu: Viewport Size - Keep as Detected | YES | YES | YES |
143
- | Sidebar Menu: Viewport Size - Select "Small" | YES | YES | YES |
144
- | Sidebar Menu: Viewport Size - Select "Medium" | YES | YES | YES |
145
- | Sidebar Menu: Viewport Size - Select "Large" | YES | YES | YES |
146
- | Sidebar Menu: Viewport Size - Select "Fit to Window" | YES | YES | YES |
147
- | Dropdown Menu: Edge - Select "Format edges based on optimized weight parameters" | YES | YES | YES |
148
- | Dropdown Menu: Edge - Select "Default to black edges with regular arrowheads" | YES | YES | YES |
149
- | Sidebar Menu: Hide/Show Edge Weights - Select "Show With Mouse Over" | NO | YES | NO |
150
- | Sidebar Menu: Hide/Show Edge Weights - Select "Always Show Edge Weights" | NO | YES | NO |
151
- | Sidebar Menu: Hide/Show Edge Weights - Select "Never Show Edge Weights" | NO | YES | NO |
152
- | Dropdown Menu: Edge -> Hide/Show Edge Weights - Check "Show With Mouse Over" | NO | YES | NO |
153
- | Dropdown Menu: Edge -> Hide/Show Edge Weights - Check "Always Show Edge Weights" | NO | YES | NO |
154
- | Dropdown Menu: Edge -> Hide/Show Edge Weights - Check "Never Show Edge Weights" | NO | YES | NO |
155
- | Sidebar Menu: Edge Weight Normalization Factor - Enter a Number in the Box and Click "Set Factor" button | NO | YES | NO |
156
- | Dropdown Menu: Edge -> Edge Weight Normalization Factor - Enter a Number in the Box and Press Enter | NO | YES | NO |
157
- | Sidebar Menu: Reset Factor Button - Click | NO | YES | NO |
158
- | Dropdown Menu: Edge -> Reset Edge Weight Normalization - Click | NO | YES | NO |
159
- | Sidebar Menu: Gray Threshold Slider - Change the Grey Threshold Value | NO | YES | NO |
160
- | Dropdown Menu: Edge -> Gray Threshold Input Box - Change the Grey Threshold Value and Press Enter | NO | YES | NO |
161
- | Sidebar Menu: Show Grey Edges as Dashed Checkbox - Uncheck | NO | YES | NO |
162
- | Sidebar Menu: Show Grey Edges as Dashed Checkbox - Check | NO | YES | NO |
163
- | Dropdown Menu: Edge -> Show Grey Edges as Dashed - Uncheck | NO | YES | NO |
164
- | Dropdown Menu: Edge -> Show Grey Edges as Dashed - Check | NO | YES | NO |
165
- | Viewport Menu: D-Pad Control - Click Right Arrow | NO | YES | YES |
166
- | Viewport Menu: D-Pad Control - Click Left Arrow | NO | YES | YES |
167
- | Viewport Menu: D-Pad Control - Click Up Arrow | NO | YES | YES |
168
- | Viewport Menu: D-Pad Control - Click Down Arrow | NO | YES | YES |
169
- | Viewport Menu: D-Pad Control - Click Center Button | NO | YES | YES |
170
- | Viewport Menu: Zoom Slider - Increase Zoom Level | NO | YES | YES |
171
- | Viewport Menu: Zoom Slider - Decrease Zoom Level | NO | YES | YES |
172
- | Sidebar Menu: Top Dataset - Keep Default Selection | NO | YES | YES |
173
- | Sidebar Menu: Top Dataset - Select Top Dataset from Dropdown List | NO | YES | YES |
174
- | Dropdown Menu: Node -> Select Top Dataset - Keep Default Selection | NO | YES | YES |
175
- | Dropdown Menu: Node -> Select Top Dataset - Check New Top Dataset from Dropdown List | NO | YES | YES |
176
- | Sidebar Menu: Bottom Dataset - Keep Default Selection | NO | YES | YES |
177
- | Sidebar Menu: Bottom Dataset - Select Bottom Dataset from Dropdown List | NO | YES | YES |
178
- | Dropdown Menu: Node -> Select Bottom Dataset - Keep Default Selection | NO | YES | YES |
179
- | Dropdown Menu: Node -> Select Bottom Dataset - Check New Bottom Dataset from Dropdown List | NO | YES | YES |
180
- | Sidebar Menu: Log Fold Change Max Value - Keep Default Value | NO | YES | YES |
181
- | Sidebar Menu: Log Fold Change Max Value - Increase Log Fold Change Max Value | NO | YES | YES |
182
- | Sidebar Menu: Log Fold Change Max Value - Decrease Log Fold Change Max Value | NO | YES | YES |
183
- | Dropdown Menu: Node -> Log Fold Change Max Value - Keep Default Value | NO | YES | YES |
184
- | Dropdown Menu: Node -> Log Fold Change Max Value - Increase Log Fold Change Max Value | NO | YES | YES |
185
- | Dropdown Menu: Node -> Log Fold Change Max Value - Decrease Log Fold Change Max Value | NO | YES | YES |
186
- | Sidebar Menu: Average Replicates Values (Top Dataset) - Check | NO | YES | YES |
187
- | Sidebar Menu: Average Replicates Values (Top Dataset) - Uncheck | NO | YES | YES |
188
- | Dropdown Menu: Node -> Average Replicates Values (Top Dataset) - Check | NO | YES | YES |
189
- | Dropdown Menu: Node -> Average Replicates Values (Top Dataset) - Uncheck | NO | YES | YES |
190
- | Sidebar Menu: Average Replicates Values (Bottom Dataset) - Check | NO | YES | YES |
191
- | Sidebar Menu: Average Replicates Values (Bottom Dataset) - Uncheck | NO | YES | YES |
192
- | Dropdown Menu: Node -> Average Replicates Values (Bottom Dataset) - Check | NO | YES | YES |
193
- | Dropdown Menu: Node -> Average Replicates Values (Bottom Dataset) - Uncheck | NO | YES | YES |
194
- | Sidebar Menu: Node Coloring Toggle Button - Click | NO | YES | YES |
195
- | Dropdown Menu: Node -> Disable Node Coloring - Check | NO | YES | YES |
196
- | Dropdown Menu: Node -> Disable Node Coloring - Uncheck | NO | YES | YES |
197
- | Sidebar Menu: Grid Layout - Keep at Default | YES | YES | YES |
198
- | Sidebar Menu: Grid Layout - Click Grid Layout Button | YES | YES | YES |
199
- | Sidebar Menu: Grid Layout - Click Force Graph Layout Button | YES | YES | YES |
200
- | Dropdown Menu: View -> Viewport Size - Keep as Detected | YES | YES | YES |
201
- | Dropdown Menu: View -> Viewport Size - Check "Small" | YES | YES | YES |
202
- | Dropdown Menu: View -> Viewport Size - Check "Medium" | YES | YES | YES |
203
- | Dropdown Menu: View -> Viewport Size - Check "Large" | YES | YES | YES |
204
- | Dropdown Menu: View -> Viewport Size - Check "Fit to Window" | YES | YES | YES |
205
- | Dropdown Menu: View -> Restrict Graph to Viewport - Check | YES | YES | YES |
206
- | Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck | YES | YES | YES |
207
- | Dropdown Menu: View -> Zoom - Enter Zoom Value, then Press Enter | NO | YES | YES |
208
- | Dropdown Menu: Layout -> Graph Options - Keep at Default | NO | YES | YES |
209
- | Dropdown Menu: Layout -> Graph Options - Grid Layout | NO | YES | YES |
210
- | Dropdown Menu: Layout -> Graph Options - Force Graph | NO | YES | YES |
211
- | Dropdown Menu: Layout -> Lock Force Graph Parameters - Check "Lock Force Graph Parameters" | NO | YES | YES |
212
- | Dropdown Menu: Layout -> Lock Force Graph Parameters - Uncheck "Lock Force Graph Parameters" | NO | YES | YES |
213
- | Dropdown Menu: Layout -> Reset Force Graph Parameters - Click "Reset Force Graph Parameters" | YES | YES | YES |
214
- | Dropdown Menu: Layout -> Undo Reset - Click "Undo Reset" | YES | YES | YES |
215
- | Dropdown Menu: Layout -> Link Distance - Input Value, then Press Enter | YES | YES | YES |
216
- | Dropdown Menu: Layout -> Charge - Input Value, then Press Enter | YES | YES | YES |
217
-
218
- ## Client Side Tests
219
- ### Test 1
220
- Instructions:
221
- - Dropdown Menu: Node -> Disable Node Coloring - Check
222
- - Sidebar Menu: Grid Layout - Keep at Default
223
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
224
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
225
-
226
- Results:
227
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
228
- - The graph should default to force graph layout
229
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
230
- - The viewport should always be contained within the viewport.
231
-
232
- ### Test 2
233
- Instructions:
234
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
235
- - Sidebar Menu: Grid Layout - Keep at Default
236
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
237
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
238
-
239
- Results:
240
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
241
- - The graph should default to force graph layout
242
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
243
- - The viewport should always be contained within the viewport.
244
-
245
- ### Test 3
246
- Instructions:
247
- - Dropdown Menu: Node -> Disable Node Coloring - Check
248
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
249
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
250
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
251
-
252
- Results:
253
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
254
- - The graph should change to grid layout
255
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
256
- - The viewport should always be contained within the viewport.
257
-
258
- ### Test 4
259
- Instructions:
260
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
261
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
262
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
263
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
264
-
265
- Results:
266
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
267
- - The graph should change to grid layout
268
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
269
- - The viewport should always be contained within the viewport.
270
-
271
- ### Test 5
272
- Instructions:
273
- - Dropdown Menu: Node -> Disable Node Coloring - Check
274
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
275
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
276
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
277
-
278
- Results:
279
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
280
- - The graph should change to force graph layout
281
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
282
- - The viewport should always be contained within the viewport.
283
-
284
- ### Test 6
285
- Instructions:
286
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
287
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
288
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
289
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
290
-
291
- Results:
292
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
293
- - The graph should change to force graph layout
294
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
295
- - The viewport should always be contained within the viewport.
296
-
297
- ### Test 7
298
- Instructions:
299
- - Dropdown Menu: Node -> Disable Node Coloring - Check
300
- - Sidebar Menu: Grid Layout - Keep at Default
301
- - Dropdown Menu: View -> Viewport Size - Check "Small"
302
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
303
-
304
- Results:
305
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
306
- - The graph should default to force graph layout
307
- - The viewport size should be set to small
308
- - The viewport should always be contained within the viewport.
309
-
310
- ### Test 8
311
- Instructions:
312
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
313
- - Sidebar Menu: Grid Layout - Keep at Default
314
- - Dropdown Menu: View -> Viewport Size - Check "Small"
315
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
316
-
317
- Results:
318
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
319
- - The graph should default to force graph layout
320
- - The viewport size should be set to small
321
- - The viewport should always be contained within the viewport.
322
-
323
- ### Test 9
324
- Instructions:
325
- - Dropdown Menu: Node -> Disable Node Coloring - Check
326
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
327
- - Dropdown Menu: View -> Viewport Size - Check "Small"
328
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
329
-
330
- Results:
331
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
332
- - The graph should change to grid layout
333
- - The viewport size should be set to small
334
- - The viewport should always be contained within the viewport.
335
-
336
- ### Test 10
337
- Instructions:
338
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
339
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
340
- - Dropdown Menu: View -> Viewport Size - Check "Small"
341
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
342
-
343
- Results:
344
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
345
- - The graph should change to grid layout
346
- - The viewport size should be set to small
347
- - The viewport should always be contained within the viewport.
348
-
349
- ### Test 11
350
- Instructions:
351
- - Dropdown Menu: Node -> Disable Node Coloring - Check
352
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
353
- - Dropdown Menu: View -> Viewport Size - Check "Small"
354
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
355
-
356
- Results:
357
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
358
- - The graph should change to force graph layout
359
- - The viewport size should be set to small
360
- - The viewport should always be contained within the viewport.
361
-
362
- ### Test 12
363
- Instructions:
364
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
365
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
366
- - Dropdown Menu: View -> Viewport Size - Check "Small"
367
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
368
-
369
- Results:
370
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
371
- - The graph should change to force graph layout
372
- - The viewport size should be set to small
373
- - The viewport should always be contained within the viewport.
374
-
375
- ### Test 13
376
- Instructions:
377
- - Dropdown Menu: Node -> Disable Node Coloring - Check
378
- - Sidebar Menu: Grid Layout - Keep at Default
379
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
380
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
381
-
382
- Results:
383
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
384
- - The graph should default to force graph layout
385
- - The viewport size should be set to medium
386
- - The viewport should always be contained within the viewport.
387
-
388
- ### Test 14
389
- Instructions:
390
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
391
- - Sidebar Menu: Grid Layout - Keep at Default
392
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
393
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
394
-
395
- Results:
396
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
397
- - The graph should default to force graph layout
398
- - The viewport size should be set to medium
399
- - The viewport should always be contained within the viewport.
400
-
401
- ### Test 15
402
- Instructions:
403
- - Dropdown Menu: Node -> Disable Node Coloring - Check
404
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
405
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
406
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
407
-
408
- Results:
409
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
410
- - The graph should change to grid layout
411
- - The viewport size should be set to medium
412
- - The viewport should always be contained within the viewport.
413
-
414
- ### Test 16
415
- Instructions:
416
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
417
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
418
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
419
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
420
-
421
- Results:
422
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
423
- - The graph should change to grid layout
424
- - The viewport size should be set to medium
425
- - The viewport should always be contained within the viewport.
426
-
427
- ### Test 17
428
- Instructions:
429
- - Dropdown Menu: Node -> Disable Node Coloring - Check
430
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
431
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
432
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
433
-
434
- Results:
435
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
436
- - The graph should change to force graph layout
437
- - The viewport size should be set to medium
438
- - The viewport should always be contained within the viewport.
439
-
440
- ### Test 18
441
- Instructions:
442
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
443
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
444
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
445
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
446
-
447
- Results:
448
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
449
- - The graph should change to force graph layout
450
- - The viewport size should be set to medium
451
- - The viewport should always be contained within the viewport.
452
-
453
- ### Test 19
454
- Instructions:
455
- - Dropdown Menu: Node -> Disable Node Coloring - Check
456
- - Sidebar Menu: Grid Layout - Keep at Default
457
- - Dropdown Menu: View -> Viewport Size - Check "Large"
458
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
459
-
460
- Results:
461
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
462
- - The graph should default to force graph layout
463
- - The viewport size should be set to large
464
- - The viewport should always be contained within the viewport.
465
-
466
- ### Test 20
467
- Instructions:
468
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
469
- - Sidebar Menu: Grid Layout - Keep at Default
470
- - Dropdown Menu: View -> Viewport Size - Check "Large"
471
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
472
-
473
- Results:
474
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
475
- - The graph should default to force graph layout
476
- - The viewport size should be set to large
477
- - The viewport should always be contained within the viewport.
478
-
479
- ### Test 21
480
- Instructions:
481
- - Dropdown Menu: Node -> Disable Node Coloring - Check
482
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
483
- - Dropdown Menu: View -> Viewport Size - Check "Large"
484
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
485
-
486
- Results:
487
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
488
- - The graph should change to grid layout
489
- - The viewport size should be set to large
490
- - The viewport should always be contained within the viewport.
491
-
492
- ### Test 22
493
- Instructions:
494
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
495
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
496
- - Dropdown Menu: View -> Viewport Size - Check "Large"
497
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
498
-
499
- Results:
500
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
501
- - The graph should change to grid layout
502
- - The viewport size should be set to large
503
- - The viewport should always be contained within the viewport.
504
-
505
- ### Test 23
506
- Instructions:
507
- - Dropdown Menu: Node -> Disable Node Coloring - Check
508
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
509
- - Dropdown Menu: View -> Viewport Size - Check "Large"
510
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
511
-
512
- Results:
513
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
514
- - The graph should change to force graph layout
515
- - The viewport size should be set to large
516
- - The viewport should always be contained within the viewport.
517
-
518
- ### Test 24
519
- Instructions:
520
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
521
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
522
- - Dropdown Menu: View -> Viewport Size - Check "Large"
523
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
524
-
525
- Results:
526
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
527
- - The graph should change to force graph layout
528
- - The viewport size should be set to large
529
- - The viewport should always be contained within the viewport.
530
-
531
- ### Test 25
532
- Instructions:
533
- - Dropdown Menu: Node -> Disable Node Coloring - Check
534
- - Sidebar Menu: Grid Layout - Keep at Default
535
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
536
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
537
-
538
- Results:
539
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
540
- - The graph should default to force graph layout
541
- - The viewport size should automatically be set to the size of the browser window
542
- - The viewport should always be contained within the viewport.
543
-
544
- ### Test 26
545
- Instructions:
546
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
547
- - Sidebar Menu: Grid Layout - Keep at Default
548
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
549
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
550
-
551
- Results:
552
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
553
- - The graph should default to force graph layout
554
- - The viewport size should automatically be set to the size of the browser window
555
- - The viewport should always be contained within the viewport.
556
-
557
- ### Test 27
558
- Instructions:
559
- - Dropdown Menu: Node -> Disable Node Coloring - Check
560
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
561
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
562
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
563
-
564
- Results:
565
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
566
- - The graph should change to grid layout
567
- - The viewport size should automatically be set to the size of the browser window
568
- - The viewport should always be contained within the viewport.
569
-
570
- ### Test 28
571
- Instructions:
572
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
573
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
574
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
575
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
576
-
577
- Results:
578
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
579
- - The graph should change to grid layout
580
- - The viewport size should automatically be set to the size of the browser window
581
- - The viewport should always be contained within the viewport.
582
-
583
- ### Test 29
584
- Instructions:
585
- - Dropdown Menu: Node -> Disable Node Coloring - Check
586
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
587
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
588
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
589
-
590
- Results:
591
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
592
- - The graph should change to force graph layout
593
- - The viewport size should automatically be set to the size of the browser window
594
- - The viewport should always be contained within the viewport.
595
-
596
- ### Test 30
597
- Instructions:
598
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
599
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
600
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
601
- - Dropdown Menu: View -> Restrict Graph to Viewport - Check
602
-
603
- Results:
604
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
605
- - The graph should change to force graph layout
606
- - The viewport size should automatically be set to the size of the browser window
607
- - The viewport should always be contained within the viewport.
608
-
609
- ### Test 31
610
- Instructions:
611
- - Dropdown Menu: Node -> Disable Node Coloring - Check
612
- - Sidebar Menu: Grid Layout - Keep at Default
613
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
614
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
615
-
616
- Results:
617
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
618
- - The graph should default to force graph layout
619
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
620
- - The viewport should be allowed to extend past the viewport
621
-
622
- ### Test 32
623
- Instructions:
624
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
625
- - Sidebar Menu: Grid Layout - Keep at Default
626
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
627
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
628
-
629
- Results:
630
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
631
- - The graph should default to force graph layout
632
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
633
- - The viewport should be allowed to extend past the viewport
634
-
635
- ### Test 33
636
- Instructions:
637
- - Dropdown Menu: Node -> Disable Node Coloring - Check
638
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
639
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
640
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
641
-
642
- Results:
643
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
644
- - The graph should change to grid layout
645
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
646
- - The viewport should be allowed to extend past the viewport
647
-
648
- ### Test 34
649
- Instructions:
650
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
651
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
652
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
653
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
654
-
655
- Results:
656
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
657
- - The graph should change to grid layout
658
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
659
- - The viewport should be allowed to extend past the viewport
660
-
661
- ### Test 35
662
- Instructions:
663
- - Dropdown Menu: Node -> Disable Node Coloring - Check
664
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
665
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
666
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
667
-
668
- Results:
669
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
670
- - The graph should change to force graph layout
671
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
672
- - The viewport should be allowed to extend past the viewport
673
-
674
- ### Test 36
675
- Instructions:
676
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
677
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
678
- - Dropdown Menu: View -> Viewport Size - Keep as Detected
679
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
680
-
681
- Results:
682
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
683
- - The graph should change to force graph layout
684
- - Upon loading or reloading the GRNsight webpage, the viewport size should be automatically detected and set to small, medium, or large, based on the size of the browser window.
685
- - The viewport should be allowed to extend past the viewport
686
-
687
- ### Test 37
688
- Instructions:
689
- - Dropdown Menu: Node -> Disable Node Coloring - Check
690
- - Sidebar Menu: Grid Layout - Keep at Default
691
- - Dropdown Menu: View -> Viewport Size - Check "Small"
692
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
693
-
694
- Results:
695
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
696
- - The graph should default to force graph layout
697
- - The viewport size should be set to small
698
- - The viewport should be allowed to extend past the viewport
699
-
700
- ### Test 38
701
- Instructions:
702
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
703
- - Sidebar Menu: Grid Layout - Keep at Default
704
- - Dropdown Menu: View -> Viewport Size - Check "Small"
705
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
706
-
707
- Results:
708
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
709
- - The graph should default to force graph layout
710
- - The viewport size should be set to small
711
- - The viewport should be allowed to extend past the viewport
712
-
713
- ### Test 39
714
- Instructions:
715
- - Dropdown Menu: Node -> Disable Node Coloring - Check
716
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
717
- - Dropdown Menu: View -> Viewport Size - Check "Small"
718
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
719
-
720
- Results:
721
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
722
- - The graph should change to grid layout
723
- - The viewport size should be set to small
724
- - The viewport should be allowed to extend past the viewport
725
-
726
- ### Test 40
727
- Instructions:
728
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
729
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
730
- - Dropdown Menu: View -> Viewport Size - Check "Small"
731
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
732
-
733
- Results:
734
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
735
- - The graph should change to grid layout
736
- - The viewport size should be set to small
737
- - The viewport should be allowed to extend past the viewport
738
-
739
- ### Test 41
740
- Instructions:
741
- - Dropdown Menu: Node -> Disable Node Coloring - Check
742
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
743
- - Dropdown Menu: View -> Viewport Size - Check "Small"
744
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
745
-
746
- Results:
747
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
748
- - The graph should change to force graph layout
749
- - The viewport size should be set to small
750
- - The viewport should be allowed to extend past the viewport
751
-
752
- ### Test 42
753
- Instructions:
754
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
755
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
756
- - Dropdown Menu: View -> Viewport Size - Check "Small"
757
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
758
-
759
- Results:
760
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
761
- - The graph should change to force graph layout
762
- - The viewport size should be set to small
763
- - The viewport should be allowed to extend past the viewport
764
-
765
- ### Test 43
766
- Instructions:
767
- - Dropdown Menu: Node -> Disable Node Coloring - Check
768
- - Sidebar Menu: Grid Layout - Keep at Default
769
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
770
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
771
-
772
- Results:
773
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
774
- - The graph should default to force graph layout
775
- - The viewport size should be set to medium
776
- - The viewport should be allowed to extend past the viewport
777
-
778
- ### Test 44
779
- Instructions:
780
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
781
- - Sidebar Menu: Grid Layout - Keep at Default
782
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
783
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
784
-
785
- Results:
786
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
787
- - The graph should default to force graph layout
788
- - The viewport size should be set to medium
789
- - The viewport should be allowed to extend past the viewport
790
-
791
- ### Test 45
792
- Instructions:
793
- - Dropdown Menu: Node -> Disable Node Coloring - Check
794
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
795
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
796
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
797
-
798
- Results:
799
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
800
- - The graph should change to grid layout
801
- - The viewport size should be set to medium
802
- - The viewport should be allowed to extend past the viewport
803
-
804
- ### Test 46
805
- Instructions:
806
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
807
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
808
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
809
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
810
-
811
- Results:
812
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
813
- - The graph should change to grid layout
814
- - The viewport size should be set to medium
815
- - The viewport should be allowed to extend past the viewport
816
-
817
- ### Test 47
818
- Instructions:
819
- - Dropdown Menu: Node -> Disable Node Coloring - Check
820
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
821
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
822
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
823
-
824
- Results:
825
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
826
- - The graph should change to force graph layout
827
- - The viewport size should be set to medium
828
- - The viewport should be allowed to extend past the viewport
829
-
830
- ### Test 48
831
- Instructions:
832
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
833
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
834
- - Dropdown Menu: View -> Viewport Size - Check "Medium"
835
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
836
-
837
- Results:
838
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
839
- - The graph should change to force graph layout
840
- - The viewport size should be set to medium
841
- - The viewport should be allowed to extend past the viewport
842
-
843
- ### Test 49
844
- Instructions:
845
- - Dropdown Menu: Node -> Disable Node Coloring - Check
846
- - Sidebar Menu: Grid Layout - Keep at Default
847
- - Dropdown Menu: View -> Viewport Size - Check "Large"
848
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
849
-
850
- Results:
851
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
852
- - The graph should default to force graph layout
853
- - The viewport size should be set to large
854
- - The viewport should be allowed to extend past the viewport
855
-
856
- ### Test 50
857
- Instructions:
858
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
859
- - Sidebar Menu: Grid Layout - Keep at Default
860
- - Dropdown Menu: View -> Viewport Size - Check "Large"
861
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
862
-
863
- Results:
864
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
865
- - The graph should default to force graph layout
866
- - The viewport size should be set to large
867
- - The viewport should be allowed to extend past the viewport
868
-
869
- ### Test 51
870
- Instructions:
871
- - Dropdown Menu: Node -> Disable Node Coloring - Check
872
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
873
- - Dropdown Menu: View -> Viewport Size - Check "Large"
874
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
875
-
876
- Results:
877
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
878
- - The graph should change to grid layout
879
- - The viewport size should be set to large
880
- - The viewport should be allowed to extend past the viewport
881
-
882
- ### Test 52
883
- Instructions:
884
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
885
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
886
- - Dropdown Menu: View -> Viewport Size - Check "Large"
887
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
888
-
889
- Results:
890
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
891
- - The graph should change to grid layout
892
- - The viewport size should be set to large
893
- - The viewport should be allowed to extend past the viewport
894
-
895
- ### Test 53
896
- Instructions:
897
- - Dropdown Menu: Node -> Disable Node Coloring - Check
898
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
899
- - Dropdown Menu: View -> Viewport Size - Check "Large"
900
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
901
-
902
- Results:
903
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
904
- - The graph should change to force graph layout
905
- - The viewport size should be set to large
906
- - The viewport should be allowed to extend past the viewport
907
-
908
- ### Test 54
909
- Instructions:
910
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
911
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
912
- - Dropdown Menu: View -> Viewport Size - Check "Large"
913
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
914
-
915
- Results:
916
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
917
- - The graph should change to force graph layout
918
- - The viewport size should be set to large
919
- - The viewport should be allowed to extend past the viewport
920
-
921
- ### Test 55
922
- Instructions:
923
- - Dropdown Menu: Node -> Disable Node Coloring - Check
924
- - Sidebar Menu: Grid Layout - Keep at Default
925
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
926
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
927
-
928
- Results:
929
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
930
- - The graph should default to force graph layout
931
- - The viewport size should automatically be set to the size of the browser window
932
- - The viewport should be allowed to extend past the viewport
933
-
934
- ### Test 56
935
- Instructions:
936
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
937
- - Sidebar Menu: Grid Layout - Keep at Default
938
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
939
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
940
-
941
- Results:
942
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
943
- - The graph should default to force graph layout
944
- - The viewport size should automatically be set to the size of the browser window
945
- - The viewport should be allowed to extend past the viewport
946
-
947
- ### Test 57
948
- Instructions:
949
- - Dropdown Menu: Node -> Disable Node Coloring - Check
950
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
951
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
952
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
953
-
954
- Results:
955
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
956
- - The graph should change to grid layout
957
- - The viewport size should automatically be set to the size of the browser window
958
- - The viewport should be allowed to extend past the viewport
959
-
960
- ### Test 58
961
- Instructions:
962
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
963
- - Sidebar Menu: Grid Layout - Click Grid Layout Button
964
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
965
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
966
-
967
- Results:
968
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
969
- - The graph should change to grid layout
970
- - The viewport size should automatically be set to the size of the browser window
971
- - The viewport should be allowed to extend past the viewport
972
-
973
- ### Test 59
974
- Instructions:
975
- - Dropdown Menu: Node -> Disable Node Coloring - Check
976
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
977
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
978
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
979
-
980
- Results:
981
- - Node coloring should become disabled, and Node Coloring Toggle Button text in sidebar menu should read 'Enable Node Coloring', if expression data sheets are present in input workbook
982
- - The graph should change to force graph layout
983
- - The viewport size should automatically be set to the size of the browser window
984
- - The viewport should be allowed to extend past the viewport
985
-
986
- ### Test 60
987
- Instructions:
988
- - Dropdown Menu: Node -> Disable Node Coloring - Uncheck
989
- - Sidebar Menu: Grid Layout - Click Force Graph Layout Button
990
- - Dropdown Menu: View -> Viewport Size - Check "Fit to Window"
991
- - Dropdown Menu: View -> Restrict Graph to Viewport - Uncheck
992
-
993
- Results:
994
- - Node coloring should become enabled, and Node Coloring Toggle Button text in sidebar menu should read 'Disable Node Coloring', if expression data sheets are present in input workbook
995
- - The graph should change to force graph layout
996
- - The viewport size should automatically be set to the size of the browser window
997
- - The viewport should be allowed to extend past the viewport
998
-