grnsight 3.0.0 → 5.1.0

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Files changed (489) hide show
  1. package/.eslintignore +1 -0
  2. package/.travis.yml +1 -1
  3. package/GRNsight - Beta.html +194 -0
  4. package/Gemfile.lock +259 -0
  5. package/README.md +1 -1
  6. package/_gh_pages/about.html +360 -45
  7. package/_gh_pages/assets/css/footer.css +3 -0
  8. package/_gh_pages/assets/css/main.css +28 -14
  9. package/_gh_pages/assets/images/21-genes_31-edges_Schade-data_estimation_output_binary-no-targetless-genes_sif.png +0 -0
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  25. package/{documents/manuscripts/peerj-computerscience-2016/figures/submitted-versions/Figure1_zoom145_900pix-wide.png → _gh_pages/assets/images/demo-3_network-sheet.png} +0 -0
  26. package/{documents/manuscripts/peerj-computerscience-2016/figures/submitted-versions/Figure2_zoom145_900pix-wide.png → _gh_pages/assets/images/demo-4_network-optimized-weights-sheet.png} +0 -0
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  88. package/_gh_pages/documents/manuscripts/peerj-computerscience-2016/revisions/GRNsight_PeerJ-CS_manuscript_2016_text-only_revised-Dondi.docx +0 -0
  89. package/_gh_pages/encryption/server.cert +21 -0
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  109. package/coverage/coverage.json +1 -1
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  145. package/server/app.js +6 -2
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1146
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1397
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1398
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1399
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499
1400
  BRF:22
500
- BRH:21
1401
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501
1402
  end_of_record
502
1403
  TN:
503
- SF:/Users/dondi/Documents/Main/Code/git/GRNsight/server/controllers/export-controller.js
1404
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1414
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1446
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1447
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1448
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1449
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1450
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1451
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1452
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1454
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1455
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1456
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1457
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1458
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1459
+ end_of_record
1460
+ TN:
1461
+ SF:/Users/dondi/Documents/Main/Code/git/GRNsight/web-client/public/gene/api.js
504
1462
  FN:6,(anonymous_1)
505
- FN:11,(anonymous_2)
506
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507
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508
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509
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510
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511
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512
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1463
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1464
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1465
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1466
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1471
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1476
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1488
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1490
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1491
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1492
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1493
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1494
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1495
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1496
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1497
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1498
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1499
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1500
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1501
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1521
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1522
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1523
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1524
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1525
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1526
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1527
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1528
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1529
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1530
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1665
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1707
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1709
+ TN:
1710
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1712
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1720
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1721
+ FNF:10
513
1722
  FNH:1
514
1723
  FNDA:0,(anonymous_1)
515
1724
  FNDA:0,(anonymous_2)
@@ -519,45 +1728,58 @@ FNDA:0,(anonymous_5)
519
1728
  FNDA:0,(anonymous_6)
520
1729
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521
1730
  FNDA:0,(anonymous_8)
1731
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1732
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522
1733
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523
1734
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524
1735
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525
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526
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1736
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527
1738
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529
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530
1741
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531
1742
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535
1746
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536
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1748
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538
1749
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539
1750
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1753
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1754
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1755
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1758
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1759
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549
1760
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550
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1761
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1763
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1764
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554
1765
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557
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558
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559
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560
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1766
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1767
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1780
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1781
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1782
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561
1783
  BRF:2
562
1784
  BRH:1
563
1785
  end_of_record
@@ -568,33 +1790,33 @@ FN:6,(anonymous_2)
568
1790
  FN:19,(anonymous_3)
569
1791
  FN:22,(anonymous_4)
570
1792
  FNF:4
571
- FNH:4
572
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573
- FNDA:74,(anonymous_2)
574
- FNDA:4,(anonymous_3)
575
- FNDA:18,(anonymous_4)
1793
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1794
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1795
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1796
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1797
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576
1798
  DA:1,1
577
1799
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578
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579
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580
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581
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583
1805
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585
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586
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587
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1806
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1807
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1808
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1809
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588
1810
  LF:12
589
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590
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591
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592
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593
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594
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595
- BRDA:16,3,1,6
1811
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1812
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1813
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1814
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1815
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1816
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1817
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596
1818
  BRF:6
597
- BRH:6
1819
+ BRH:0
598
1820
  end_of_record
599
1821
  TN:
600
1822
  SF:/Users/dondi/Documents/Main/Code/git/GRNsight/server/controllers/exporters/graphml.js
@@ -603,468 +1825,128 @@ FN:57,(anonymous_2)
603
1825
  FN:67,(anonymous_3)
604
1826
  FN:105,(anonymous_4)
605
1827
  FNF:4
606
- FNH:4
607
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608
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609
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610
- FNDA:5,(anonymous_4)
1828
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1829
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1830
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1831
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1832
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611
1833
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1834
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613
1835
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614
1836
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615
1837
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1838
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621
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631
1853
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632
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1854
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633
1855
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634
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635
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636
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637
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638
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639
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640
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1856
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1857
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1858
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1859
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1860
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1861
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1862
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641
1863
  BRF:6
642
- BRH:6
1864
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643
1865
  end_of_record
644
1866
  TN:
645
- SF:/Users/dondi/Documents/Main/Code/git/GRNsight/server/controllers/import-controller.js
646
- FN:6,(anonymous_1)
647
- FN:12,(anonymous_2)
648
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1867
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1870
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649
1871
  FN:31,(anonymous_4)
650
1872
  FN:43,(anonymous_5)
651
- FN:47,(anonymous_6)
652
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653
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654
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1873
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1874
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1875
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1876
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1877
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1878
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655
1879
  FNDA:0,(anonymous_2)
656
1880
  FNDA:0,(anonymous_3)
657
1881
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658
1882
  FNDA:0,(anonymous_5)
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912
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  end_of_record