grnsight 3.0.0 → 5.1.0

package/coverage/lcov-report/controllers/exporters/graphml.js.html

@@ -16,154 +16,157 @@
 <div class='wrapper'>
   <div class='pad1'>
     <h1>
-      <a href="../../index.html">all files</a> / <a href="index.html">controllers/exporters/</a> graphml.js
+      <a href="../../index.html">All files</a> / <a href="index.html">controllers/exporters</a> graphml.js
     </h1>
     <div class='clearfix'>
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-        <span class="strong">100% </span>
+        <span class="strong">31.82% </span>
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+        <span class='fraction'>7/22</span>
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+    <p class="quiet">
+      Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+    </p>
   </div>
-  <div class='status-line high'></div>
+  <div class='status-line low'></div>
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+<a name='L113'></a><a href='#L113'>113</a></td><td class="line-coverage quiet"><span class="cline-any cline-yes">1x</span>
+<span class="cline-any cline-yes">1x</span>
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@@ -274,8 +277,8 @@ var INTERACTION_ID = "interaction";
 var NAME_ID = "name";
 var WEIGHT_ID = "weight";
 &nbsp;
-var grnsightToGraphMlJson = function (network) {
-    var convertedNetwork = {
+var grnsightToGraphMlJson = <span class="fstat-no" title="function not covered" >fu</span>nction (network) {
+    var convertedNetwork = <span class="cstat-no" title="statement not covered" >{</span>
         graphml: {
             "@xmlns": "http://graphml.graphdrawing.org/xmlns",
             "@xmlns:xsi": "http://www.w3.org/2001/XMLSchema-instance",
@@ -311,8 +314,8 @@ var grnsightToGraphMlJson = function (network) {
         }
     };
 &nbsp;
-    if (network.sheetType === constants.WEIGHTED) {
-        convertedNetwork.graphml.key.push({
+<span class="cstat-no" title="statement not covered" >    if (network.sheetType === constants.WEIGHTED) {</span>
+<span class="cstat-no" title="statement not covered" >        convertedNetwork.graphml.key.push({</span>
             "@id": WEIGHT_ID,
             "@for": "edge",
             "@attr.name": "weight",
@@ -320,11 +323,11 @@ var grnsightToGraphMlJson = function (network) {
         });
     }
 &nbsp;
-    convertedNetwork.graphml.graph = {
+<span class="cstat-no" title="statement not covered" >    convertedNetwork.graphml.graph = {</span>
         "@edgedefault": "directed",
 &nbsp;
-        node: network.genes.map(function (gene) {
-            return {
+        node: network.genes.map(<span class="fstat-no" title="function not covered" >fu</span>nction (gene) {
+<span class="cstat-no" title="statement not covered" >            return {</span>
                 "@id": gene.name,
                 data: {
                     "@key": NAME_ID,
@@ -333,11 +336,11 @@ var grnsightToGraphMlJson = function (network) {
             };
         }),
 &nbsp;
-        edge: network.links.map(function (link) {
-            var sourceGeneId = network.genes[link.source].name;
-            var targetGeneId = network.genes[link.target].name;
+        edge: network.links.map(<span class="fstat-no" title="function not covered" >fu</span>nction (link) {
+            var sourceGeneId = <span class="cstat-no" title="statement not covered" >network.genes[link.source].name;</span>
+            var targetGeneId = <span class="cstat-no" title="statement not covered" >network.genes[link.target].name;</span>
 &nbsp;
-            var edge = {
+            var edge = <span class="cstat-no" title="statement not covered" >{</span>
                 "@source": sourceGeneId,
                 "@target": targetGeneId,
                 data: [
@@ -353,26 +356,26 @@ var grnsightToGraphMlJson = function (network) {
                 ]
             };
 &nbsp;
-            if (network.sheetType === constants.WEIGHTED) {
-                edge.data.push({
+<span class="cstat-no" title="statement not covered" >            if (network.sheetType === constants.WEIGHTED) {</span>
+<span class="cstat-no" title="statement not covered" >                edge.data.push({</span>
                     "@key": WEIGHT_ID,
                     "#text": link.value
                 });
             }
 &nbsp;
-            return edge;
+<span class="cstat-no" title="statement not covered" >            return edge;</span>
         })
     };
 &nbsp;
-    if (network.filename) {
-        convertedNetwork.graphml.graph["@id"] = network.filename;
+<span class="cstat-no" title="statement not covered" >    if (network.filename) {</span>
+<span class="cstat-no" title="statement not covered" >        convertedNetwork.graphml.graph["@id"] = network.filename;</span>
     }
 &nbsp;
-    return convertedNetwork;
+<span class="cstat-no" title="statement not covered" >    return convertedNetwork;</span>
 };
 &nbsp;
-module.exports = function (network) {
-    return xmlbuilder.create(grnsightToGraphMlJson(network), {
+module.exports = <span class="fstat-no" title="function not covered" >fu</span>nction (network) {
+<span class="cstat-no" title="statement not covered" >    return xmlbuilder.create(grnsightToGraphMlJson(network), {</span>
         version: "1.0",
         encoding: "UTF-8"
     }).end({
@@ -385,7 +388,7 @@ module.exports = function (network) {
 </div><!-- /wrapper -->
 <div class='footer quiet pad2 space-top1 center small'>
   Code coverage
-  generated by <a href="http://istanbul-js.org/" target="_blank">istanbul</a> at Fri Sep 29 2017 00:22:47 GMT-0700 (PDT)
+  generated by <a href="https://istanbul.js.org/" target="_blank">istanbul</a> at Thu May 31 2018 15:29:17 GMT-0700 (PDT)
 </div>
 </div>
 <script src="../../prettify.js"></script>
@@ -397,5 +400,6 @@ window.onload = function () {
 };
 </script>
 <script src="../../sorter.js"></script>
+<script src="../../block-navigation.js"></script>
 </body>
 </html>

package/coverage/lcov-report/controllers/exporters/index.html

@@ -1,7 +1,7 @@
 <!doctype html>
 <html lang="en">
 <head>
-    <title>Code coverage report for controllers/exporters/</title>
+    <title>Code coverage report for controllers/exporters</title>
     <meta charset="utf-8" />
     <link rel="stylesheet" href="../../prettify.css" />
     <link rel="stylesheet" href="../../base.css" />
@@ -16,32 +16,35 @@
 <div class='wrapper'>
   <div class='pad1'>
     <h1>
-      <a href="../../index.html">all files</a> controllers/exporters/
+      <a href="../../index.html">All files</a> controllers/exporters
     </h1>
     <div class='clearfix'>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">29.41% </span>
         <span class="quiet">Statements</span>
-        <span class='fraction'>34/34</span>
+        <span class='fraction'>10/34</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">0% </span>
         <span class="quiet">Branches</span>
-        <span class='fraction'>12/12</span>
+        <span class='fraction'>0/12</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">0% </span>
         <span class="quiet">Functions</span>
-        <span class='fraction'>8/8</span>
+        <span class='fraction'>0/8</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">29.41% </span>
         <span class="quiet">Lines</span>
-        <span class='fraction'>34/34</span>
+        <span class='fraction'>10/34</span>
       </div>
     </div>
+    <p class="quiet">
+      Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+    </p>
   </div>
-  <div class='status-line high'></div>
+  <div class='status-line low'></div>
 <div class="pad1">
 <table class="coverage-summary">
 <thead>
@@ -59,29 +62,29 @@
 </tr>
 </thead>
 <tbody><tr>
-	<td class="file high" data-value="graphml.js"><a href="graphml.js.html">graphml.js</a></td>
-	<td data-value="100" class="pic high"><div class="chart"><div class="cover-fill cover-full" style="width: 100%;"></div><div class="cover-empty" style="width:0%;"></div></div></td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="22" class="abs high">22/22</td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="6" class="abs high">6/6</td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="4" class="abs high">4/4</td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="22" class="abs high">22/22</td>
+	<td class="file low" data-value="graphml.js"><a href="graphml.js.html">graphml.js</a></td>
+	<td data-value="31.82" class="pic low"><div class="chart"><div class="cover-fill" style="width: 31%;"></div><div class="cover-empty" style="width:69%;"></div></div></td>
+	<td data-value="31.82" class="pct low">31.82%</td>
+	<td data-value="22" class="abs low">7/22</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="6" class="abs low">0/6</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="4" class="abs low">0/4</td>
+	<td data-value="31.82" class="pct low">31.82%</td>
+	<td data-value="22" class="abs low">7/22</td>
 	</tr>
 
 <tr>
-	<td class="file high" data-value="sif.js"><a href="sif.js.html">sif.js</a></td>
-	<td data-value="100" class="pic high"><div class="chart"><div class="cover-fill cover-full" style="width: 100%;"></div><div class="cover-empty" style="width:0%;"></div></div></td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="12" class="abs high">12/12</td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="6" class="abs high">6/6</td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="4" class="abs high">4/4</td>
-	<td data-value="100" class="pct high">100%</td>
-	<td data-value="12" class="abs high">12/12</td>
+	<td class="file low" data-value="sif.js"><a href="sif.js.html">sif.js</a></td>
+	<td data-value="25" class="pic low"><div class="chart"><div class="cover-fill" style="width: 25%;"></div><div class="cover-empty" style="width:75%;"></div></div></td>
+	<td data-value="25" class="pct low">25%</td>
+	<td data-value="12" class="abs low">3/12</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="6" class="abs low">0/6</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="4" class="abs low">0/4</td>
+	<td data-value="25" class="pct low">25%</td>
+	<td data-value="12" class="abs low">3/12</td>
 	</tr>
 
 </tbody>
@@ -90,7 +93,7 @@
 </div><!-- /wrapper -->
 <div class='footer quiet pad2 space-top1 center small'>
   Code coverage
-  generated by <a href="http://istanbul-js.org/" target="_blank">istanbul</a> at Fri Sep 29 2017 00:22:47 GMT-0700 (PDT)
+  generated by <a href="https://istanbul.js.org/" target="_blank">istanbul</a> at Thu May 31 2018 15:29:17 GMT-0700 (PDT)
 </div>
 </div>
 <script src="../../prettify.js"></script>
@@ -102,5 +105,6 @@ window.onload = function () {
 };
 </script>
 <script src="../../sorter.js"></script>
+<script src="../../block-navigation.js"></script>
 </body>
 </html>