grnsight 3.0.0 → 5.1.0

package/coverage/lcov-report/controllers/exporters/sif.js.html

@@ -16,68 +16,71 @@
 <div class='wrapper'>
   <div class='pad1'>
     <h1>
-      <a href="../../index.html">all files</a> / <a href="index.html">controllers/exporters/</a> sif.js
+      <a href="../../index.html">All files</a> / <a href="index.html">controllers/exporters</a> sif.js
     </h1>
     <div class='clearfix'>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">25% </span>
         <span class="quiet">Statements</span>
-        <span class='fraction'>12/12</span>
+        <span class='fraction'>3/12</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">0% </span>
         <span class="quiet">Branches</span>
-        <span class='fraction'>6/6</span>
+        <span class='fraction'>0/6</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">0% </span>
         <span class="quiet">Functions</span>
-        <span class='fraction'>4/4</span>
+        <span class='fraction'>0/4</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">100% </span>
+        <span class="strong">25% </span>
         <span class="quiet">Lines</span>
-        <span class='fraction'>12/12</span>
+        <span class='fraction'>3/12</span>
       </div>
     </div>
+    <p class="quiet">
+      Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+    </p>
   </div>
-  <div class='status-line high'></div>
+  <div class='status-line low'></div>
 <pre><table class="coverage">
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-28</td><td class="line-coverage quiet"><span class="cline-any cline-yes">1×</span>
+<tr><td class="line-count quiet"><a name='L1'></a><a href='#L1'>1</a>
+<a name='L2'></a><a href='#L2'>2</a>
+<a name='L3'></a><a href='#L3'>3</a>
+<a name='L4'></a><a href='#L4'>4</a>
+<a name='L5'></a><a href='#L5'>5</a>
+<a name='L6'></a><a href='#L6'>6</a>
+<a name='L7'></a><a href='#L7'>7</a>
+<a name='L8'></a><a href='#L8'>8</a>
+<a name='L9'></a><a href='#L9'>9</a>
+<a name='L10'></a><a href='#L10'>10</a>
+<a name='L11'></a><a href='#L11'>11</a>
+<a name='L12'></a><a href='#L12'>12</a>
+<a name='L13'></a><a href='#L13'>13</a>
+<a name='L14'></a><a href='#L14'>14</a>
+<a name='L15'></a><a href='#L15'>15</a>
+<a name='L16'></a><a href='#L16'>16</a>
+<a name='L17'></a><a href='#L17'>17</a>
+<a name='L18'></a><a href='#L18'>18</a>
+<a name='L19'></a><a href='#L19'>19</a>
+<a name='L20'></a><a href='#L20'>20</a>
+<a name='L21'></a><a href='#L21'>21</a>
+<a name='L22'></a><a href='#L22'>22</a>
+<a name='L23'></a><a href='#L23'>23</a>
+<a name='L24'></a><a href='#L24'>24</a>
+<a name='L25'></a><a href='#L25'>25</a>
+<a name='L26'></a><a href='#L26'>26</a>
+<a name='L27'></a><a href='#L27'>27</a>
+<a name='L28'></a><a href='#L28'>28</a></td><td class="line-coverage quiet"><span class="cline-any cline-yes">1x</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">1×</span>
-<span class="cline-any cline-yes">18×</span>
+<span class="cline-any cline-yes">1x</span>
+<span class="cline-any cline-no">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">18×</span>
-<span class="cline-any cline-yes">74×</span>
-<span class="cline-any cline-yes">16×</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
@@ -85,26 +88,26 @@
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">18×</span>
+<span class="cline-any cline-no">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">1×</span>
-<span class="cline-any cline-yes">4×</span>
+<span class="cline-any cline-yes">1x</span>
+<span class="cline-any cline-no">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">4×</span>
-<span class="cline-any cline-yes">18×</span>
+<span class="cline-any cline-no">&nbsp;</span>
+<span class="cline-any cline-no">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">4×</span>
+<span class="cline-any cline-no">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span></td><td class="text"><pre class="prettyprint lang-js">var constants = require(__dirname + "/../constants");
 &nbsp;
-var exportEdges = function (network, gene, geneIndex) {
-    var result = "";
+var exportEdges = <span class="fstat-no" title="function not covered" >fu</span>nction (network, gene, geneIndex) {
+    var result = <span class="cstat-no" title="statement not covered" >"";</span>
 &nbsp;
-    network.links.forEach(function (link) {
-        if (link.source === geneIndex) {
-            result += [
+<span class="cstat-no" title="statement not covered" >    network.links.forEach(<span class="fstat-no" title="function not covered" >fu</span>nction (link) {</span>
+<span class="cstat-no" title="statement not covered" >        if (link.source === geneIndex) {</span>
+<span class="cstat-no" title="statement not covered" >            result += [</span>
                 gene.name,
                 network.sheetType === constants.UNWEIGHTED ? "pd" : link.value,
                 network.genes[link.target].name
@@ -112,17 +115,17 @@ var exportEdges = function (network, gene, geneIndex) {
         }
     });
 &nbsp;
-    return result || (gene.name + "\t\t\n");
+<span class="cstat-no" title="statement not covered" >    return result || (gene.name + "\t\t\n");</span>
 };
 &nbsp;
-module.exports = function (network) {
-    var result = "";
+module.exports = <span class="fstat-no" title="function not covered" >fu</span>nction (network) {
+    var result = <span class="cstat-no" title="statement not covered" >"";</span>
 &nbsp;
-    network.genes.forEach(function (gene, geneIndex) {
-        result += exportEdges(network, gene, geneIndex);
+<span class="cstat-no" title="statement not covered" >    network.genes.forEach(<span class="fstat-no" title="function not covered" >fu</span>nction (gene, geneIndex) {</span>
+<span class="cstat-no" title="statement not covered" >        result += exportEdges(network, gene, geneIndex);</span>
     });
 &nbsp;
-    return result;
+<span class="cstat-no" title="statement not covered" >    return result;</span>
 };
 &nbsp;</pre></td></tr>
 </table></pre>
@@ -130,7 +133,7 @@ module.exports = function (network) {
 </div><!-- /wrapper -->
 <div class='footer quiet pad2 space-top1 center small'>
   Code coverage
-  generated by <a href="http://istanbul-js.org/" target="_blank">istanbul</a> at Fri Sep 29 2017 00:22:47 GMT-0700 (PDT)
+  generated by <a href="https://istanbul.js.org/" target="_blank">istanbul</a> at Thu May 31 2018 15:29:17 GMT-0700 (PDT)
 </div>
 </div>
 <script src="../../prettify.js"></script>
@@ -142,5 +145,6 @@ window.onload = function () {
 };
 </script>
 <script src="../../sorter.js"></script>
+<script src="../../block-navigation.js"></script>
 </body>
 </html>

package/coverage/lcov-report/controllers/helpers.js.html

@@ -16,7 +16,7 @@
 <div class='wrapper'>
   <div class='pad1'>
     <h1>
-      <a href="../index.html">all files</a> / <a href="index.html">controllers/</a> helpers.js
+      <a href="../index.html">All files</a> / <a href="index.html">controllers</a> helpers.js
     </h1>
     <div class='clearfix'>
       <div class='fl pad1y space-right2'>
@@ -40,27 +40,30 @@
         <span class='fraction'>2/6</span>
       </div>
     </div>
+    <p class="quiet">
+      Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+    </p>
   </div>
   <div class='status-line low'></div>
 <pre><table class="coverage">
-<tr><td class="line-count quiet">1
-2
-3
-4
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-16</td><td class="line-coverage quiet"><span class="cline-any cline-yes">1×</span>
+<tr><td class="line-count quiet"><a name='L1'></a><a href='#L1'>1</a>
+<a name='L2'></a><a href='#L2'>2</a>
+<a name='L3'></a><a href='#L3'>3</a>
+<a name='L4'></a><a href='#L4'>4</a>
+<a name='L5'></a><a href='#L5'>5</a>
+<a name='L6'></a><a href='#L6'>6</a>
+<a name='L7'></a><a href='#L7'>7</a>
+<a name='L8'></a><a href='#L8'>8</a>
+<a name='L9'></a><a href='#L9'>9</a>
+<a name='L10'></a><a href='#L10'>10</a>
+<a name='L11'></a><a href='#L11'>11</a>
+<a name='L12'></a><a href='#L12'>12</a>
+<a name='L13'></a><a href='#L13'>13</a>
+<a name='L14'></a><a href='#L14'>14</a>
+<a name='L15'></a><a href='#L15'>15</a>
+<a name='L16'></a><a href='#L16'>16</a></td><td class="line-coverage quiet"><span class="cline-any cline-yes">1x</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
-<span class="cline-any cline-yes">1×</span>
+<span class="cline-any cline-yes">1x</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-neutral">&nbsp;</span>
 <span class="cline-any cline-no">&nbsp;</span>
@@ -77,11 +80,11 @@
 &nbsp;
 module.exports = {
 &nbsp;
-    attachCorsHeader: <span class="fstat-no" title="function not covered" >function (res, app) {</span>
+    attachCorsHeader: <span class="fstat-no" title="function not covered" >fu</span>nction (res, app) {
 <span class="cstat-no" title="statement not covered" >        res.header("Access-Control-Allow-Origin", app.get("corsOrigin"));</span>
     },
 &nbsp;
-    attachFileHeaders: <span class="fstat-no" title="function not covered" >function (res, path) {</span>
+    attachFileHeaders: <span class="fstat-no" title="function not covered" >fu</span>nction (res, path) {
 <span class="cstat-no" title="statement not covered" >        res.header("Access-Control-Allow-Methods", "POST, GET");</span>
 <span class="cstat-no" title="statement not covered" >        res.header("Access-Control-Expose-Headers", constants.GRNSIGHT_FILENAME_HEADER);</span>
 <span class="cstat-no" title="statement not covered" >        res.header(constants.GRNSIGHT_FILENAME_HEADER, path.split("/").pop());</span>
@@ -94,7 +97,7 @@ module.exports = {
 </div><!-- /wrapper -->
 <div class='footer quiet pad2 space-top1 center small'>
   Code coverage
-  generated by <a href="http://istanbul-js.org/" target="_blank">istanbul</a> at Fri Sep 29 2017 00:22:47 GMT-0700 (PDT)
+  generated by <a href="https://istanbul.js.org/" target="_blank">istanbul</a> at Thu May 31 2018 15:29:17 GMT-0700 (PDT)
 </div>
 </div>
 <script src="../prettify.js"></script>
@@ -106,5 +109,6 @@ window.onload = function () {
 };
 </script>
 <script src="../sorter.js"></script>
+<script src="../block-navigation.js"></script>
 </body>
 </html>

package/coverage/lcov-report/controllers/index.html

@@ -1,7 +1,7 @@
 <!doctype html>
 <html lang="en">
 <head>
-    <title>Code coverage report for controllers/</title>
+    <title>Code coverage report for controllers</title>
     <meta charset="utf-8" />
     <link rel="stylesheet" href="../prettify.css" />
     <link rel="stylesheet" href="../base.css" />
@@ -16,32 +16,35 @@
 <div class='wrapper'>
   <div class='pad1'>
     <h1>
-      <a href="../index.html">all files</a> controllers/
+      <a href="../index.html">All files</a> controllers
     </h1>
     <div class='clearfix'>
       <div class='fl pad1y space-right2'>
-        <span class="strong">61.76% </span>
+        <span class="strong">14% </span>
         <span class="quiet">Statements</span>
-        <span class='fraction'>210/340</span>
+        <span class='fraction'>49/350</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">78.85% </span>
+        <span class="strong">1.82% </span>
         <span class="quiet">Branches</span>
-        <span class='fraction'>82/104</span>
+        <span class='fraction'>2/110</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">44.44% </span>
+        <span class="strong">2.94% </span>
         <span class="quiet">Functions</span>
-        <span class='fraction'>28/63</span>
+        <span class='fraction'>2/68</span>
       </div>
       <div class='fl pad1y space-right2'>
-        <span class="strong">61.76% </span>
+        <span class="strong">14% </span>
         <span class="quiet">Lines</span>
-        <span class='fraction'>210/340</span>
+        <span class='fraction'>49/350</span>
       </div>
     </div>
+    <p class="quiet">
+      Press <em>n</em> or <em>j</em> to go to the next uncovered block, <em>b</em>, <em>p</em> or <em>k</em> for the previous block.
+    </p>
   </div>
-  <div class='status-line medium'></div>
+  <div class='status-line low'></div>
 <div class="pad1">
 <table class="coverage-summary">
 <thead>
@@ -59,6 +62,19 @@
 </tr>
 </thead>
 <tbody><tr>
+	<td class="file low" data-value="additional-sheet-parser.js"><a href="additional-sheet-parser.js.html">additional-sheet-parser.js</a></td>
+	<td data-value="17.39" class="pic low"><div class="chart"><div class="cover-fill" style="width: 17%;"></div><div class="cover-empty" style="width:83%;"></div></div></td>
+	<td data-value="17.39" class="pct low">17.39%</td>
+	<td data-value="46" class="abs low">8/46</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="16" class="abs low">0/16</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="11" class="abs low">0/11</td>
+	<td data-value="17.39" class="pct low">17.39%</td>
+	<td data-value="46" class="abs low">8/46</td>
+	</tr>
+
+<tr>
 	<td class="file high" data-value="constants.js"><a href="constants.js.html">constants.js</a></td>
 	<td data-value="100" class="pic high"><div class="chart"><div class="cover-fill cover-full" style="width: 100%;"></div><div class="cover-empty" style="width:0%;"></div></div></td>
 	<td data-value="100" class="pct high">100%</td>
@@ -98,42 +114,29 @@
 	</tr>
 
 <tr>
-	<td class="file low" data-value="import-controller.js"><a href="import-controller.js.html">import-controller.js</a></td>
-	<td data-value="20" class="pic low"><div class="chart"><div class="cover-fill" style="width: 20%;"></div><div class="cover-empty" style="width:80%;"></div></div></td>
-	<td data-value="20" class="pct low">20%</td>
-	<td data-value="30" class="abs low">6/30</td>
-	<td data-value="10" class="pct low">10%</td>
-	<td data-value="10" class="abs low">1/10</td>
-	<td data-value="16.67" class="pct low">16.67%</td>
-	<td data-value="6" class="abs low">1/6</td>
-	<td data-value="20" class="pct low">20%</td>
-	<td data-value="30" class="abs low">6/30</td>
-	</tr>
-
-<tr>
-	<td class="file medium" data-value="semantic-checker.js"><a href="semantic-checker.js.html">semantic-checker.js</a></td>
-	<td data-value="76.12" class="pic medium"><div class="chart"><div class="cover-fill" style="width: 76%;"></div><div class="cover-empty" style="width:24%;"></div></div></td>
-	<td data-value="76.12" class="pct medium">76.12%</td>
-	<td data-value="67" class="abs medium">51/67</td>
-	<td data-value="95.45" class="pct high">95.45%</td>
-	<td data-value="22" class="abs high">21/22</td>
-	<td data-value="66.67" class="pct medium">66.67%</td>
-	<td data-value="18" class="abs medium">12/18</td>
-	<td data-value="76.12" class="pct medium">76.12%</td>
-	<td data-value="67" class="abs medium">51/67</td>
+	<td class="file low" data-value="semantic-checker.js"><a href="semantic-checker.js.html">semantic-checker.js</a></td>
+	<td data-value="14.93" class="pic low"><div class="chart"><div class="cover-fill" style="width: 14%;"></div><div class="cover-empty" style="width:86%;"></div></div></td>
+	<td data-value="14.93" class="pct low">14.93%</td>
+	<td data-value="67" class="abs low">10/67</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="22" class="abs low">0/22</td>
+	<td data-value="0" class="pct low">0%</td>
+	<td data-value="18" class="abs low">0/18</td>
+	<td data-value="14.93" class="pct low">14.93%</td>
+	<td data-value="67" class="abs low">10/67</td>
 	</tr>
 
 <tr>
-	<td class="file medium" data-value="spreadsheet-controller.js"><a href="spreadsheet-controller.js.html">spreadsheet-controller.js</a></td>
-	<td data-value="70.15" class="pic medium"><div class="chart"><div class="cover-fill" style="width: 70%;"></div><div class="cover-empty" style="width:30%;"></div></div></td>
-	<td data-value="70.15" class="pct medium">70.15%</td>
-	<td data-value="201" class="abs medium">141/201</td>
-	<td data-value="84.29" class="pct high">84.29%</td>
-	<td data-value="70" class="abs high">59/70</td>
-	<td data-value="48.28" class="pct low">48.28%</td>
-	<td data-value="29" class="abs low">14/29</td>
-	<td data-value="70.15" class="pct medium">70.15%</td>
-	<td data-value="201" class="abs medium">141/201</td>
+	<td class="file low" data-value="spreadsheet-controller.js"><a href="spreadsheet-controller.js.html">spreadsheet-controller.js</a></td>
+	<td data-value="9.74" class="pic low"><div class="chart"><div class="cover-fill" style="width: 9%;"></div><div class="cover-empty" style="width:91%;"></div></div></td>
+	<td data-value="9.74" class="pct low">9.74%</td>
+	<td data-value="195" class="abs low">19/195</td>
+	<td data-value="1.43" class="pct low">1.43%</td>
+	<td data-value="70" class="abs low">1/70</td>
+	<td data-value="3.45" class="pct low">3.45%</td>
+	<td data-value="29" class="abs low">1/29</td>
+	<td data-value="9.74" class="pct low">9.74%</td>
+	<td data-value="195" class="abs low">19/195</td>
 	</tr>
 
 </tbody>
@@ -142,7 +145,7 @@
 </div><!-- /wrapper -->
 <div class='footer quiet pad2 space-top1 center small'>
   Code coverage
-  generated by <a href="http://istanbul-js.org/" target="_blank">istanbul</a> at Fri Sep 29 2017 00:22:47 GMT-0700 (PDT)
+  generated by <a href="https://istanbul.js.org/" target="_blank">istanbul</a> at Thu May 31 2018 15:29:17 GMT-0700 (PDT)
 </div>
 </div>
 <script src="../prettify.js"></script>
@@ -154,5 +157,6 @@ window.onload = function () {
 };
 </script>
 <script src="../sorter.js"></script>
+<script src="../block-navigation.js"></script>
 </body>
 </html>