npm - grnsight - Versions diffs - 3.0.0 → 5.1.0 - Mend

grnsight 3.0.0 → 5.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (489) hide show

package/.eslintignore CHANGED Viewed

@@ -6,3 +6,4 @@ web-client/public/lib/
 web-client/public/js/jquery-1.11.0.min.js
 web-client/public/js/imagesloaded.pkgd.min.js
 web-client/public/js/grnsight.min.js
+_site/

package/.travis.yml CHANGED Viewed

@@ -1,6 +1,6 @@
 language: node_js
 node_js:
-  - "8"
+  - "10"
 script:
   - npm test
   - npm run lint

package/GRNsight - Beta.html ADDED Viewed

@@ -0,0 +1,194 @@
+<!DOCTYPE html>
+<html>
+  <head>
+    <title>GRNsight - Beta</title>
+    <link
+      rel="stylesheet"
+      type="text/css"
+      href="_gh_pages/assets/css/bootstrap.min.css"
+    />
+    <link
+      rel="stylesheet"
+      type="text/css"
+      href="_gh_pages/assets/css/main.css"
+    />
+    <meta charset="utf-8" />
+    <!-- Begin Jekyll SEO tag v2.7.1 -->
+    <meta name="generator" content="Jekyll v3.9.0" />
+    <meta property="og:title" content="Beta" />
+    <meta property="og:locale" content="en_US" />
+    <meta
+      name="description"
+      content="Beta version of GRNsight, an open source web application and service for visualizing models of small- to medium-scale gene regulatory networks."
+    />
+    <meta
+      property="og:description"
+      content="Beta version of GRNsight, an open source web application and service for visualizing models of small- to medium-scale gene regulatory networks."
+    />
+    <link rel="canonical" href="http://dondi.github.io/GRNsight/beta.html" />
+    <meta
+      property="og:url"
+      content="http://dondi.github.io/GRNsight/beta.html"
+    />
+    <meta property="og:site_name" content="GRNsight" />
+    <meta name="twitter:card" content="summary" />
+    <meta property="twitter:title" content="Beta" />
+    <script type="application/ld+json">
+      {
+        "description": "Beta version of GRNsight, an open source web application and service for visualizing models of small- to medium-scale gene regulatory networks.",
+        "publisher": {
+          "@type": "Organization",
+          "logo": {
+            "@type": "ImageObject",
+            "url": "http://dondi.github.io/GRNsight/assets/images/GRNsight_logo_20140710_main_resized.jpg"
+          }
+        },
+        "url": "http://dondi.github.io/GRNsight/beta.html",
+        "@type": "WebPage",
+        "headline": "Beta",
+        "@context": "https://schema.org"
+      }
+    </script>
+    <!-- End Jekyll SEO tag -->
+  </head>
+  <body>
+    <div id="header">
+      <div id="lmu">
+        <a href="http://www.lmu.edu" target="_blank"
+          ><img
+            src="_gh_pages/assets/images/LMULogoHQ2.png"
+            alt="LMU logo"
+            width="200"
+            height="118"
+            id="lmuLogo"/></a
+        ><br /><br /><br />
+        <p id="subtextLMU">
+          A Joint Project of the<br />
+          LMU Bioinformatics and Biomathematics Groups
+        </p>
+      </div>
+      <p id="title"><a href="_gh_pages">GRNsight</a></p>
+      <p id="subtext">
+        Web app and service for visualizing models of gene regulatory networks.
+      </p>
+      <div class="alert alert-success hidden" id="cookie-notice" role="alert">
+        <div>
+          This site uses Google Analytics to count pageviews and file uploads to
+          demonstrate usage of our software to interested parties such as our
+          employers and funding agencies. Information about your use of this
+          site is shared with Google. By using this site, you agree to its use
+          of cookies.
+        </div>
+        <button class="cookie-action" data-dismiss="alert" aria-label="Got It">
+          <strong>Got It</strong>
+        </button>
+        <a
+          target="_blank"
+          class="cookie-action"
+          href="https://www.google.com/policies/technologies/cookies/"
+        >
+          <strong>Learn More</strong>
+        </a>
+      </div>
+    </div>
+    <div id="navBar" class=".backBox">
+      <div id="stickyBar" data-spy="affix" data-offset-top="140">
+        <ul class="nav">
+          <li><a href="_gh_pages/">Home</a></li>
+          <li><a href="_gh_pages/about.html">About</a></li>
+          <li><a href="_gh_pages/news.html">News</a></li>
+          <li>
+            <a href="https://github.com/dondi/GRNsight" target="_blank"
+              >Developers</a
+            >
+          </li>
+          <li><a href="_gh_pages/documentation.html">Documentation</a></li>
+          <li>
+            <a href="https://github.com/dondi/GRNsight/wiki" target="_blank"
+              >Wiki</a
+            >
+          </li>
+          <li><a href="_gh_pages/publications.html">Publications</a></li>
+          <li><a href="_gh_pages/people.html">People</a></li>
+          <li><a href="_gh_pages/contact.html">Contact</a></li>
+          <li><a href="_gh_pages/links.html">Links</a></li>
+          <li><a href="_gh_pages/beta.html">Beta</a></li>
+          <li><a href="_gh_pages/about.html#privacy">Privacy</a></li>
+        </ul>
+        <p id="modText" class="modNav">
+          Last modified: 4/28/2021
+        </p>
+      </div>
+    </div>
+    <div id="mainContent">
+      <p id="pageTitle">Beta <span id="version">v4.0.35</span></p>
+      <div id="graphPageContent">
+        <p>
+          <span style="font-weight:bold">Disclaimer: </span>This is the beta
+          version of GRNsight for live testing of new functionality. For the
+          most stable version, please go to the
+          <a href="_gh_pages/">GRNsight home page</a>.
+        </p>
+        <iframe class="embedded-demo" src="http://localhost:5001"></iframe>
+      </div>
+      <div id="footer">
+        <hr id="separate" />
+        <ul id="footerNav">
+          <li><a href="_gh_pages/">Home</a></li>
+          <li><a href="_gh_pages/about.html">About</a></li>
+          <li><a href="_gh_pages/news.html">News</a></li>
+          <li>
+            <a href="https://github.com/dondi/GRNsight" target="_blank"
+              >Developers</a
+            >
+          </li>
+          <li><a href="_gh_pages/documentation.html">Documentation</a></li>
+          <li>
+            <a href="https://github.com/dondi/GRNsight/wiki" target="_blank"
+              >Wiki</a
+            >
+          </li>
+          <li><a href="_gh_pages/publications.html">Publications</a></li>
+          <li><a href="_gh_pages/people.html">People</a></li>
+          <li><a href="_gh_pages/contact.html">Contact</a></li>
+          <li><a href="_gh_pages/links.html">Links</a></li>
+          <li><a href="_gh_pages/beta.html">Beta</a></li>
+          <li><a href="_gh_pages/about.html#privacy">Privacy</a></li>
+        </ul>
+        <p id="CCLicense">
+          This web site is free and open to all users and there is no login
+          requirement. Web site content is available under the
+          <a
+            href="http://creativecommons.org/licenses/by-nc-sa/3.0/"
+            target="_blank"
+            >Creative Commons
+            <br />
+            Attribution Non-Commercial Share Alike 3.0 Unported License</a
+          >. GRNsight code is available under the open source
+          <a href="http://opensource.org/licenses/BSD-3-Clause" target="_blank"
+            >BSD license</a
+          >.
+          <br />
+          This page has been accessed <span class="ga-report"></span> times.
+          <span class="ga-upload"></span> files have been uploaded and viewed
+          with GRNsight.
+        </p>
+      </div>
+    </div>
+    <script src="https://code.jquery.com/jquery.js"></script>
+    <script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js"></script>
+    <!-- Placeholder for whatever the final iframe management solution will be. -->
+    <script src="_gh_pages/assets/js/iframeResizer.min.js"></script>
+    <script src="http://localhost:5001/js/iframe-coordination.js"></script>
+  </body>
+</html>

package/Gemfile.lock ADDED Viewed

@@ -0,0 +1,259 @@
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+    coffee-script (2.4.1)
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+    coffee-script-source (1.11.1)
+    colorator (1.1.0)
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+      ruby-enum (~> 0.5)
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+PLATFORMS
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+DEPENDENCIES
+  github-pages (= 209)
+BUNDLED WITH
+   2.1.4

package/README.md CHANGED Viewed

@@ -1,7 +1,7 @@
 GRNsight
 ========
 [![DOI](https://zenodo.org/badge/16195791.svg)](https://zenodo.org/badge/latestdoi/16195791)
-[![Build Status](https://travis-ci.org/dondi/GRNsight.svg?branch=master)](https://travis-ci.org/dondi/GRNsight)
+[![Build Status](https://app.travis-ci.com/dondi/GRNsight.svg?branch=master)](https://app.travis-ci.com/dondi/GRNsight)
 [![Coverage Status](https://coveralls.io/repos/github/dondi/GRNsight/badge.svg?branch=master)](https://coveralls.io/github/dondi/GRNsight?branch=master)
 http://dondi.github.io/GRNsight/