docrev 0.10.1 → 0.11.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (167) hide show
  1. package/.gitattributes +1 -1
  2. package/CHANGELOG.md +184 -173
  3. package/PLAN-tables-and-postprocess.md +850 -850
  4. package/README.md +431 -431
  5. package/bin/rev.js +11 -11
  6. package/bin/rev.ts +145 -145
  7. package/completions/rev.bash +127 -127
  8. package/completions/rev.ps1 +210 -210
  9. package/completions/rev.zsh +207 -207
  10. package/dist/lib/anchor-match.d.ts +4 -2
  11. package/dist/lib/anchor-match.d.ts.map +1 -1
  12. package/dist/lib/anchor-match.js +52 -24
  13. package/dist/lib/anchor-match.js.map +1 -1
  14. package/dist/lib/annotations.d.ts +0 -6
  15. package/dist/lib/annotations.d.ts.map +1 -1
  16. package/dist/lib/annotations.js +26 -8
  17. package/dist/lib/annotations.js.map +1 -1
  18. package/dist/lib/build.d.ts.map +1 -1
  19. package/dist/lib/build.js +13 -10
  20. package/dist/lib/build.js.map +1 -1
  21. package/dist/lib/commands/build.d.ts.map +1 -1
  22. package/dist/lib/commands/build.js +5 -0
  23. package/dist/lib/commands/build.js.map +1 -1
  24. package/dist/lib/commands/doi.d.ts.map +1 -1
  25. package/dist/lib/commands/doi.js +14 -2
  26. package/dist/lib/commands/doi.js.map +1 -1
  27. package/dist/lib/commands/sync.d.ts.map +1 -1
  28. package/dist/lib/commands/sync.js +98 -107
  29. package/dist/lib/commands/sync.js.map +1 -1
  30. package/dist/lib/commands/utilities.js +164 -164
  31. package/dist/lib/commands/word-tools.js +8 -8
  32. package/dist/lib/comment-realign.d.ts +12 -21
  33. package/dist/lib/comment-realign.d.ts.map +1 -1
  34. package/dist/lib/comment-realign.js +40 -348
  35. package/dist/lib/comment-realign.js.map +1 -1
  36. package/dist/lib/dependencies.d.ts +10 -0
  37. package/dist/lib/dependencies.d.ts.map +1 -1
  38. package/dist/lib/dependencies.js +41 -9
  39. package/dist/lib/dependencies.js.map +1 -1
  40. package/dist/lib/doi.d.ts.map +1 -1
  41. package/dist/lib/doi.js +68 -80
  42. package/dist/lib/doi.js.map +1 -1
  43. package/dist/lib/errors.d.ts.map +1 -1
  44. package/dist/lib/errors.js +3 -1
  45. package/dist/lib/errors.js.map +1 -1
  46. package/dist/lib/grammar.js +3 -3
  47. package/dist/lib/import.d.ts +7 -4
  48. package/dist/lib/import.d.ts.map +1 -1
  49. package/dist/lib/import.js +58 -62
  50. package/dist/lib/import.js.map +1 -1
  51. package/dist/lib/macro-filter.lua +201 -201
  52. package/dist/lib/ooxml.d.ts +207 -0
  53. package/dist/lib/ooxml.d.ts.map +1 -0
  54. package/dist/lib/ooxml.js +634 -0
  55. package/dist/lib/ooxml.js.map +1 -0
  56. package/dist/lib/pdf-comments.js +44 -44
  57. package/dist/lib/plugins.js +57 -57
  58. package/dist/lib/pptx-color-filter.lua +37 -37
  59. package/dist/lib/pptx-themes.js +115 -115
  60. package/dist/lib/rate-limiter.d.ts +8 -0
  61. package/dist/lib/rate-limiter.d.ts.map +1 -1
  62. package/dist/lib/rate-limiter.js +41 -4
  63. package/dist/lib/rate-limiter.js.map +1 -1
  64. package/dist/lib/sections.d.ts.map +1 -1
  65. package/dist/lib/sections.js +5 -2
  66. package/dist/lib/sections.js.map +1 -1
  67. package/dist/lib/spelling.js +2 -2
  68. package/dist/lib/templates.js +387 -387
  69. package/dist/lib/themes.js +51 -51
  70. package/dist/lib/types.d.ts +9 -1
  71. package/dist/lib/types.d.ts.map +1 -1
  72. package/dist/lib/word-extraction.d.ts.map +1 -1
  73. package/dist/lib/word-extraction.js +48 -307
  74. package/dist/lib/word-extraction.js.map +1 -1
  75. package/dist/lib/word.d.ts.map +1 -1
  76. package/dist/lib/word.js +80 -175
  77. package/dist/lib/word.js.map +1 -1
  78. package/dist/lib/wordcomments.d.ts.map +1 -1
  79. package/dist/lib/wordcomments.js +53 -92
  80. package/dist/lib/wordcomments.js.map +1 -1
  81. package/docs-src/build.py +113 -113
  82. package/docs-src/extra.css +208 -208
  83. package/docs-src/md-to-html.lua +6 -6
  84. package/docs-src/template.html +116 -116
  85. package/eslint.config.js +27 -27
  86. package/lib/anchor-match.ts +307 -276
  87. package/lib/annotations.ts +664 -644
  88. package/lib/build.ts +1770 -1766
  89. package/lib/citations.ts +160 -160
  90. package/lib/commands/build.ts +860 -855
  91. package/lib/commands/citations.ts +515 -515
  92. package/lib/commands/comments.ts +1050 -1050
  93. package/lib/commands/context.ts +176 -176
  94. package/lib/commands/core.ts +309 -309
  95. package/lib/commands/doi.ts +451 -435
  96. package/lib/commands/file-ops.ts +372 -372
  97. package/lib/commands/history.ts +320 -320
  98. package/lib/commands/index.ts +87 -87
  99. package/lib/commands/init.ts +259 -259
  100. package/lib/commands/merge-resolve.ts +378 -378
  101. package/lib/commands/preview.ts +178 -178
  102. package/lib/commands/project-info.ts +244 -244
  103. package/lib/commands/quality.ts +517 -517
  104. package/lib/commands/response.ts +454 -454
  105. package/lib/commands/section-boundaries.ts +82 -82
  106. package/lib/commands/sections.ts +451 -451
  107. package/lib/commands/sync.ts +689 -709
  108. package/lib/commands/text-ops.ts +449 -449
  109. package/lib/commands/utilities.ts +448 -448
  110. package/lib/commands/verify-anchors.ts +272 -272
  111. package/lib/commands/word-tools.ts +340 -340
  112. package/lib/comment-realign.ts +99 -517
  113. package/lib/config.ts +84 -84
  114. package/lib/crossref.ts +781 -781
  115. package/lib/csl.ts +191 -191
  116. package/lib/dependencies.ts +132 -98
  117. package/lib/diff-engine.ts +465 -465
  118. package/lib/doi-cache.ts +115 -115
  119. package/lib/doi.ts +879 -897
  120. package/lib/equations.ts +506 -506
  121. package/lib/errors.ts +350 -346
  122. package/lib/format.ts +541 -541
  123. package/lib/git.ts +326 -326
  124. package/lib/grammar.ts +303 -303
  125. package/lib/image-registry.ts +180 -180
  126. package/lib/import.ts +906 -911
  127. package/lib/journals.ts +543 -543
  128. package/lib/macro-filter.lua +201 -201
  129. package/lib/macros.ts +273 -273
  130. package/lib/merge.ts +633 -633
  131. package/lib/ooxml.ts +768 -0
  132. package/lib/orcid.ts +144 -144
  133. package/lib/pdf-comments.ts +263 -263
  134. package/lib/pdf-import.ts +524 -524
  135. package/lib/plugins.ts +362 -362
  136. package/lib/postprocess.ts +188 -188
  137. package/lib/pptx-color-filter.lua +37 -37
  138. package/lib/pptx-template.ts +469 -469
  139. package/lib/pptx-themes.ts +483 -483
  140. package/lib/protect-restore.ts +520 -520
  141. package/lib/rate-limiter.ts +127 -94
  142. package/lib/response.ts +197 -197
  143. package/lib/restore-references.ts +240 -240
  144. package/lib/review.ts +327 -327
  145. package/lib/schema.ts +488 -488
  146. package/lib/scientific-words.ts +73 -73
  147. package/lib/sections.ts +428 -425
  148. package/lib/slides.ts +756 -756
  149. package/lib/spelling.ts +334 -334
  150. package/lib/templates.ts +526 -526
  151. package/lib/themes.ts +742 -742
  152. package/lib/trackchanges.ts +247 -247
  153. package/lib/tui.ts +450 -450
  154. package/lib/types.ts +558 -550
  155. package/lib/undo.ts +250 -250
  156. package/lib/utils.ts +69 -69
  157. package/lib/variables.ts +179 -179
  158. package/lib/word-extraction.ts +525 -806
  159. package/lib/word.ts +526 -643
  160. package/lib/wordcomments.ts +789 -840
  161. package/mkdocs.yml +64 -64
  162. package/package.json +137 -137
  163. package/scripts/postbuild.js +47 -47
  164. package/skill/REFERENCE.md +539 -539
  165. package/skill/SKILL.md +295 -295
  166. package/tsconfig.json +26 -26
  167. package/types/index.d.ts +525 -525
package/lib/plugins.ts CHANGED
@@ -1,362 +1,362 @@
1
- /**
2
- * Plugin system for custom journal profiles and export formats
3
- *
4
- * Users can add custom profiles in:
5
- * - Project: .rev/profiles/*.yaml
6
- * - User: ~/.rev/profiles/*.yaml
7
- */
8
-
9
- import * as fs from 'fs';
10
- import * as path from 'path';
11
- import * as os from 'os';
12
- import * as yaml from 'yaml';
13
-
14
- /**
15
- * Journal profile requirements
16
- */
17
- interface ProfileRequirements {
18
- wordLimit?: Record<string, number | null>;
19
- references?: Record<string, unknown>;
20
- figures?: Record<string, unknown>;
21
- sections?: Record<string, unknown>;
22
- authors?: Record<string, unknown>;
23
- keywords?: { min?: number; max?: number } | null;
24
- dataAvailability?: boolean;
25
- [key: string]: unknown;
26
- }
27
-
28
- /**
29
- * Journal profile
30
- */
31
- interface Profile {
32
- id?: string;
33
- name: string;
34
- url?: string | null;
35
- custom?: boolean;
36
- requirements?: ProfileRequirements;
37
- [key: string]: unknown;
38
- }
39
-
40
- /**
41
- * Journal formatting defaults
42
- */
43
- interface ProfileFormatting {
44
- csl?: string;
45
- pdf?: Record<string, unknown>;
46
- docx?: Record<string, unknown>;
47
- crossref?: Record<string, unknown>;
48
- [key: string]: unknown;
49
- }
50
-
51
- /**
52
- * Normalized profile
53
- */
54
- interface NormalizedProfile {
55
- name: string;
56
- url: string | null;
57
- custom: boolean;
58
- requirements: ProfileRequirements;
59
- formatting?: ProfileFormatting;
60
- }
61
-
62
- /**
63
- * Profile list entry
64
- */
65
- interface ProfileListEntry {
66
- id: string;
67
- name: string;
68
- source: 'user' | 'project';
69
- path: string;
70
- }
71
-
72
- /**
73
- * Plugin directories info
74
- */
75
- interface PluginDirsInfo {
76
- user: string;
77
- project: string;
78
- userExists: boolean;
79
- projectExists: boolean;
80
- }
81
-
82
- // Plugin directories
83
- const USER_PLUGINS_DIR = path.join(os.homedir(), '.rev', 'profiles');
84
- const PROJECT_PLUGINS_DIR = path.join(process.cwd(), '.rev', 'profiles');
85
-
86
- /**
87
- * Load all custom journal profiles
88
- */
89
- export function loadCustomProfiles(): Record<string, NormalizedProfile> {
90
- const profiles: Record<string, NormalizedProfile> = {};
91
-
92
- // Load user profiles first (lower priority)
93
- const userProfiles = loadProfilesFromDir(USER_PLUGINS_DIR);
94
- Object.assign(profiles, userProfiles);
95
-
96
- // Load project profiles (higher priority, can override)
97
- const projectProfiles = loadProfilesFromDir(PROJECT_PLUGINS_DIR);
98
- Object.assign(profiles, projectProfiles);
99
-
100
- return profiles;
101
- }
102
-
103
- /**
104
- * Load profiles from a directory
105
- */
106
- function loadProfilesFromDir(dir: string): Record<string, NormalizedProfile> {
107
- const profiles: Record<string, NormalizedProfile> = {};
108
-
109
- if (!fs.existsSync(dir)) {
110
- return profiles;
111
- }
112
-
113
- try {
114
- const files = fs.readdirSync(dir).filter(f =>
115
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
116
- );
117
-
118
- for (const file of files) {
119
- try {
120
- const filePath = path.join(dir, file);
121
- const content = fs.readFileSync(filePath, 'utf-8');
122
- const profile = file.endsWith('.json')
123
- ? JSON.parse(content)
124
- : yaml.parse(content);
125
-
126
- if (validateProfile(profile)) {
127
- const id = profile.id || path.basename(file, path.extname(file));
128
- profiles[id] = normalizeProfile(profile);
129
- }
130
- } catch (err: unknown) {
131
- const message = err instanceof Error ? err.message : String(err);
132
- console.error(`Warning: Failed to load profile ${file}: ${message}`);
133
- }
134
- }
135
- } catch {
136
- // Directory not readable
137
- }
138
-
139
- return profiles;
140
- }
141
-
142
- /**
143
- * Validate a profile structure
144
- */
145
- function validateProfile(profile: unknown): profile is Profile {
146
- if (!profile || typeof profile !== 'object') {
147
- return false;
148
- }
149
-
150
- const p = profile as Profile;
151
-
152
- // Must have a name
153
- if (!p.name || typeof p.name !== 'string') {
154
- return false;
155
- }
156
-
157
- // Requirements must be an object if present
158
- if (p.requirements && typeof p.requirements !== 'object') {
159
- return false;
160
- }
161
-
162
- return true;
163
- }
164
-
165
- /**
166
- * Normalize profile to standard structure
167
- */
168
- function normalizeProfile(profile: Profile): NormalizedProfile {
169
- const normalized: NormalizedProfile = {
170
- name: profile.name,
171
- url: profile.url || null,
172
- custom: true,
173
- requirements: {
174
- wordLimit: profile.requirements?.wordLimit || (profile as { wordLimit?: Record<string, number> }).wordLimit || {},
175
- references: profile.requirements?.references || (profile as { references?: Record<string, unknown> }).references || {},
176
- figures: profile.requirements?.figures || (profile as { figures?: Record<string, unknown> }).figures || {},
177
- sections: profile.requirements?.sections || (profile as { sections?: Record<string, unknown> }).sections || {},
178
- authors: profile.requirements?.authors || (profile as { authors?: Record<string, unknown> }).authors || {},
179
- keywords: profile.requirements?.keywords || (profile as { keywords?: { min?: number; max?: number } }).keywords || null,
180
- dataAvailability: profile.requirements?.dataAvailability || (profile as { dataAvailability?: boolean }).dataAvailability || false,
181
- ...profile.requirements,
182
- },
183
- };
184
-
185
- // Pass through formatting if present
186
- const formatting = (profile as { formatting?: ProfileFormatting }).formatting;
187
- if (formatting && typeof formatting === 'object') {
188
- normalized.formatting = formatting;
189
- }
190
-
191
- return normalized;
192
- }
193
-
194
- /**
195
- * Initialize plugin directories
196
- */
197
- export function initPluginDir(project = false): string {
198
- const dir = project ? PROJECT_PLUGINS_DIR : USER_PLUGINS_DIR;
199
-
200
- if (!fs.existsSync(dir)) {
201
- fs.mkdirSync(dir, { recursive: true });
202
- }
203
-
204
- return dir;
205
- }
206
-
207
- /**
208
- * Get plugin directories info
209
- */
210
- export function getPluginDirs(): PluginDirsInfo {
211
- return {
212
- user: USER_PLUGINS_DIR,
213
- project: PROJECT_PLUGINS_DIR,
214
- userExists: fs.existsSync(USER_PLUGINS_DIR),
215
- projectExists: fs.existsSync(PROJECT_PLUGINS_DIR),
216
- };
217
- }
218
-
219
- /**
220
- * Create a sample profile template
221
- */
222
- export function createProfileTemplate(journalName: string): string {
223
- const id = journalName.toLowerCase().replace(/\s+/g, '-');
224
-
225
- return `# Custom journal profile for ${journalName}
226
- # Save as: ~/.rev/profiles/${id}.yaml (user-wide)
227
- # Or: .rev/profiles/${id}.yaml (project-specific)
228
-
229
- id: ${id}
230
- name: "${journalName}"
231
- url: "https://journal-website.com/author-guidelines"
232
-
233
- # Word count limits
234
- wordLimit:
235
- main: 8000 # null for no limit
236
- abstract: 300
237
- title: null # characters
238
-
239
- # Reference requirements
240
- references:
241
- max: null # null for no limit
242
- doiRequired: true
243
-
244
- # Figure/table limits
245
- figures:
246
- max: 8
247
- combinedWithTables: false
248
-
249
- # Required sections
250
- sections:
251
- required:
252
- - Abstract
253
- - Introduction
254
- - Methods
255
- - Results
256
- - Discussion
257
- methodsPosition: null # 'end' or 'before-results'
258
-
259
- # Keywords
260
- keywords:
261
- min: 4
262
- max: 8
263
-
264
- # Other requirements
265
- dataAvailability: true
266
- highlights: false
267
- graphicalAbstract: false
268
-
269
- # Build formatting defaults (applied via rev build -j ${id})
270
- # formatting:
271
- # csl: "${id}" # CSL style name or path
272
- # pdf:
273
- # fontsize: 12pt
274
- # geometry: margin=1in
275
- # linestretch: 1.5
276
- # numbersections: false
277
- # docx:
278
- # reference: null # Path to reference .docx template
279
- # crossref:
280
- # figPrefix: [Fig., Figs.]
281
- # tblPrefix: [Table, Tables]
282
- `;
283
- }
284
-
285
- /**
286
- * Save a profile template
287
- */
288
- export function saveProfileTemplate(journalName: string, project = false): string {
289
- const dir = initPluginDir(project);
290
- const id = journalName.toLowerCase().replace(/\s+/g, '-');
291
- const filePath = path.join(dir, `${id}.yaml`);
292
-
293
- if (fs.existsSync(filePath)) {
294
- throw new Error(`Profile already exists: ${filePath}`);
295
- }
296
-
297
- const content = createProfileTemplate(journalName);
298
- fs.writeFileSync(filePath, content, 'utf-8');
299
-
300
- return filePath;
301
- }
302
-
303
- /**
304
- * List all custom profiles
305
- */
306
- export function listCustomProfiles(): ProfileListEntry[] {
307
- const result: ProfileListEntry[] = [];
308
-
309
- // User profiles
310
- if (fs.existsSync(USER_PLUGINS_DIR)) {
311
- const files = fs.readdirSync(USER_PLUGINS_DIR).filter(f =>
312
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
313
- );
314
-
315
- for (const file of files) {
316
- try {
317
- const filePath = path.join(USER_PLUGINS_DIR, file);
318
- const content = fs.readFileSync(filePath, 'utf-8');
319
- const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
320
-
321
- if (validateProfile(profile)) {
322
- result.push({
323
- id: profile.id || path.basename(file, path.extname(file)),
324
- name: profile.name,
325
- source: 'user',
326
- path: filePath,
327
- });
328
- }
329
- } catch {
330
- // Skip invalid profiles
331
- }
332
- }
333
- }
334
-
335
- // Project profiles
336
- if (fs.existsSync(PROJECT_PLUGINS_DIR)) {
337
- const files = fs.readdirSync(PROJECT_PLUGINS_DIR).filter(f =>
338
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
339
- );
340
-
341
- for (const file of files) {
342
- try {
343
- const filePath = path.join(PROJECT_PLUGINS_DIR, file);
344
- const content = fs.readFileSync(filePath, 'utf-8');
345
- const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
346
-
347
- if (validateProfile(profile)) {
348
- result.push({
349
- id: profile.id || path.basename(file, path.extname(file)),
350
- name: profile.name,
351
- source: 'project',
352
- path: filePath,
353
- });
354
- }
355
- } catch {
356
- // Skip invalid profiles
357
- }
358
- }
359
- }
360
-
361
- return result;
362
- }
1
+ /**
2
+ * Plugin system for custom journal profiles and export formats
3
+ *
4
+ * Users can add custom profiles in:
5
+ * - Project: .rev/profiles/*.yaml
6
+ * - User: ~/.rev/profiles/*.yaml
7
+ */
8
+
9
+ import * as fs from 'fs';
10
+ import * as path from 'path';
11
+ import * as os from 'os';
12
+ import * as yaml from 'yaml';
13
+
14
+ /**
15
+ * Journal profile requirements
16
+ */
17
+ interface ProfileRequirements {
18
+ wordLimit?: Record<string, number | null>;
19
+ references?: Record<string, unknown>;
20
+ figures?: Record<string, unknown>;
21
+ sections?: Record<string, unknown>;
22
+ authors?: Record<string, unknown>;
23
+ keywords?: { min?: number; max?: number } | null;
24
+ dataAvailability?: boolean;
25
+ [key: string]: unknown;
26
+ }
27
+
28
+ /**
29
+ * Journal profile
30
+ */
31
+ interface Profile {
32
+ id?: string;
33
+ name: string;
34
+ url?: string | null;
35
+ custom?: boolean;
36
+ requirements?: ProfileRequirements;
37
+ [key: string]: unknown;
38
+ }
39
+
40
+ /**
41
+ * Journal formatting defaults
42
+ */
43
+ interface ProfileFormatting {
44
+ csl?: string;
45
+ pdf?: Record<string, unknown>;
46
+ docx?: Record<string, unknown>;
47
+ crossref?: Record<string, unknown>;
48
+ [key: string]: unknown;
49
+ }
50
+
51
+ /**
52
+ * Normalized profile
53
+ */
54
+ interface NormalizedProfile {
55
+ name: string;
56
+ url: string | null;
57
+ custom: boolean;
58
+ requirements: ProfileRequirements;
59
+ formatting?: ProfileFormatting;
60
+ }
61
+
62
+ /**
63
+ * Profile list entry
64
+ */
65
+ interface ProfileListEntry {
66
+ id: string;
67
+ name: string;
68
+ source: 'user' | 'project';
69
+ path: string;
70
+ }
71
+
72
+ /**
73
+ * Plugin directories info
74
+ */
75
+ interface PluginDirsInfo {
76
+ user: string;
77
+ project: string;
78
+ userExists: boolean;
79
+ projectExists: boolean;
80
+ }
81
+
82
+ // Plugin directories
83
+ const USER_PLUGINS_DIR = path.join(os.homedir(), '.rev', 'profiles');
84
+ const PROJECT_PLUGINS_DIR = path.join(process.cwd(), '.rev', 'profiles');
85
+
86
+ /**
87
+ * Load all custom journal profiles
88
+ */
89
+ export function loadCustomProfiles(): Record<string, NormalizedProfile> {
90
+ const profiles: Record<string, NormalizedProfile> = {};
91
+
92
+ // Load user profiles first (lower priority)
93
+ const userProfiles = loadProfilesFromDir(USER_PLUGINS_DIR);
94
+ Object.assign(profiles, userProfiles);
95
+
96
+ // Load project profiles (higher priority, can override)
97
+ const projectProfiles = loadProfilesFromDir(PROJECT_PLUGINS_DIR);
98
+ Object.assign(profiles, projectProfiles);
99
+
100
+ return profiles;
101
+ }
102
+
103
+ /**
104
+ * Load profiles from a directory
105
+ */
106
+ function loadProfilesFromDir(dir: string): Record<string, NormalizedProfile> {
107
+ const profiles: Record<string, NormalizedProfile> = {};
108
+
109
+ if (!fs.existsSync(dir)) {
110
+ return profiles;
111
+ }
112
+
113
+ try {
114
+ const files = fs.readdirSync(dir).filter(f =>
115
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
116
+ );
117
+
118
+ for (const file of files) {
119
+ try {
120
+ const filePath = path.join(dir, file);
121
+ const content = fs.readFileSync(filePath, 'utf-8');
122
+ const profile = file.endsWith('.json')
123
+ ? JSON.parse(content)
124
+ : yaml.parse(content);
125
+
126
+ if (validateProfile(profile)) {
127
+ const id = profile.id || path.basename(file, path.extname(file));
128
+ profiles[id] = normalizeProfile(profile);
129
+ }
130
+ } catch (err: unknown) {
131
+ const message = err instanceof Error ? err.message : String(err);
132
+ console.error(`Warning: Failed to load profile ${file}: ${message}`);
133
+ }
134
+ }
135
+ } catch {
136
+ // Directory not readable
137
+ }
138
+
139
+ return profiles;
140
+ }
141
+
142
+ /**
143
+ * Validate a profile structure
144
+ */
145
+ function validateProfile(profile: unknown): profile is Profile {
146
+ if (!profile || typeof profile !== 'object') {
147
+ return false;
148
+ }
149
+
150
+ const p = profile as Profile;
151
+
152
+ // Must have a name
153
+ if (!p.name || typeof p.name !== 'string') {
154
+ return false;
155
+ }
156
+
157
+ // Requirements must be an object if present
158
+ if (p.requirements && typeof p.requirements !== 'object') {
159
+ return false;
160
+ }
161
+
162
+ return true;
163
+ }
164
+
165
+ /**
166
+ * Normalize profile to standard structure
167
+ */
168
+ function normalizeProfile(profile: Profile): NormalizedProfile {
169
+ const normalized: NormalizedProfile = {
170
+ name: profile.name,
171
+ url: profile.url || null,
172
+ custom: true,
173
+ requirements: {
174
+ wordLimit: profile.requirements?.wordLimit || (profile as { wordLimit?: Record<string, number> }).wordLimit || {},
175
+ references: profile.requirements?.references || (profile as { references?: Record<string, unknown> }).references || {},
176
+ figures: profile.requirements?.figures || (profile as { figures?: Record<string, unknown> }).figures || {},
177
+ sections: profile.requirements?.sections || (profile as { sections?: Record<string, unknown> }).sections || {},
178
+ authors: profile.requirements?.authors || (profile as { authors?: Record<string, unknown> }).authors || {},
179
+ keywords: profile.requirements?.keywords || (profile as { keywords?: { min?: number; max?: number } }).keywords || null,
180
+ dataAvailability: profile.requirements?.dataAvailability || (profile as { dataAvailability?: boolean }).dataAvailability || false,
181
+ ...profile.requirements,
182
+ },
183
+ };
184
+
185
+ // Pass through formatting if present
186
+ const formatting = (profile as { formatting?: ProfileFormatting }).formatting;
187
+ if (formatting && typeof formatting === 'object') {
188
+ normalized.formatting = formatting;
189
+ }
190
+
191
+ return normalized;
192
+ }
193
+
194
+ /**
195
+ * Initialize plugin directories
196
+ */
197
+ export function initPluginDir(project = false): string {
198
+ const dir = project ? PROJECT_PLUGINS_DIR : USER_PLUGINS_DIR;
199
+
200
+ if (!fs.existsSync(dir)) {
201
+ fs.mkdirSync(dir, { recursive: true });
202
+ }
203
+
204
+ return dir;
205
+ }
206
+
207
+ /**
208
+ * Get plugin directories info
209
+ */
210
+ export function getPluginDirs(): PluginDirsInfo {
211
+ return {
212
+ user: USER_PLUGINS_DIR,
213
+ project: PROJECT_PLUGINS_DIR,
214
+ userExists: fs.existsSync(USER_PLUGINS_DIR),
215
+ projectExists: fs.existsSync(PROJECT_PLUGINS_DIR),
216
+ };
217
+ }
218
+
219
+ /**
220
+ * Create a sample profile template
221
+ */
222
+ export function createProfileTemplate(journalName: string): string {
223
+ const id = journalName.toLowerCase().replace(/\s+/g, '-');
224
+
225
+ return `# Custom journal profile for ${journalName}
226
+ # Save as: ~/.rev/profiles/${id}.yaml (user-wide)
227
+ # Or: .rev/profiles/${id}.yaml (project-specific)
228
+
229
+ id: ${id}
230
+ name: "${journalName}"
231
+ url: "https://journal-website.com/author-guidelines"
232
+
233
+ # Word count limits
234
+ wordLimit:
235
+ main: 8000 # null for no limit
236
+ abstract: 300
237
+ title: null # characters
238
+
239
+ # Reference requirements
240
+ references:
241
+ max: null # null for no limit
242
+ doiRequired: true
243
+
244
+ # Figure/table limits
245
+ figures:
246
+ max: 8
247
+ combinedWithTables: false
248
+
249
+ # Required sections
250
+ sections:
251
+ required:
252
+ - Abstract
253
+ - Introduction
254
+ - Methods
255
+ - Results
256
+ - Discussion
257
+ methodsPosition: null # 'end' or 'before-results'
258
+
259
+ # Keywords
260
+ keywords:
261
+ min: 4
262
+ max: 8
263
+
264
+ # Other requirements
265
+ dataAvailability: true
266
+ highlights: false
267
+ graphicalAbstract: false
268
+
269
+ # Build formatting defaults (applied via rev build -j ${id})
270
+ # formatting:
271
+ # csl: "${id}" # CSL style name or path
272
+ # pdf:
273
+ # fontsize: 12pt
274
+ # geometry: margin=1in
275
+ # linestretch: 1.5
276
+ # numbersections: false
277
+ # docx:
278
+ # reference: null # Path to reference .docx template
279
+ # crossref:
280
+ # figPrefix: [Fig., Figs.]
281
+ # tblPrefix: [Table, Tables]
282
+ `;
283
+ }
284
+
285
+ /**
286
+ * Save a profile template
287
+ */
288
+ export function saveProfileTemplate(journalName: string, project = false): string {
289
+ const dir = initPluginDir(project);
290
+ const id = journalName.toLowerCase().replace(/\s+/g, '-');
291
+ const filePath = path.join(dir, `${id}.yaml`);
292
+
293
+ if (fs.existsSync(filePath)) {
294
+ throw new Error(`Profile already exists: ${filePath}`);
295
+ }
296
+
297
+ const content = createProfileTemplate(journalName);
298
+ fs.writeFileSync(filePath, content, 'utf-8');
299
+
300
+ return filePath;
301
+ }
302
+
303
+ /**
304
+ * List all custom profiles
305
+ */
306
+ export function listCustomProfiles(): ProfileListEntry[] {
307
+ const result: ProfileListEntry[] = [];
308
+
309
+ // User profiles
310
+ if (fs.existsSync(USER_PLUGINS_DIR)) {
311
+ const files = fs.readdirSync(USER_PLUGINS_DIR).filter(f =>
312
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
313
+ );
314
+
315
+ for (const file of files) {
316
+ try {
317
+ const filePath = path.join(USER_PLUGINS_DIR, file);
318
+ const content = fs.readFileSync(filePath, 'utf-8');
319
+ const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
320
+
321
+ if (validateProfile(profile)) {
322
+ result.push({
323
+ id: profile.id || path.basename(file, path.extname(file)),
324
+ name: profile.name,
325
+ source: 'user',
326
+ path: filePath,
327
+ });
328
+ }
329
+ } catch {
330
+ // Skip invalid profiles
331
+ }
332
+ }
333
+ }
334
+
335
+ // Project profiles
336
+ if (fs.existsSync(PROJECT_PLUGINS_DIR)) {
337
+ const files = fs.readdirSync(PROJECT_PLUGINS_DIR).filter(f =>
338
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
339
+ );
340
+
341
+ for (const file of files) {
342
+ try {
343
+ const filePath = path.join(PROJECT_PLUGINS_DIR, file);
344
+ const content = fs.readFileSync(filePath, 'utf-8');
345
+ const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
346
+
347
+ if (validateProfile(profile)) {
348
+ result.push({
349
+ id: profile.id || path.basename(file, path.extname(file)),
350
+ name: profile.name,
351
+ source: 'project',
352
+ path: filePath,
353
+ });
354
+ }
355
+ } catch {
356
+ // Skip invalid profiles
357
+ }
358
+ }
359
+ }
360
+
361
+ return result;
362
+ }