docrev 0.10.1 → 0.11.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (167) hide show
  1. package/.gitattributes +1 -1
  2. package/CHANGELOG.md +184 -173
  3. package/PLAN-tables-and-postprocess.md +850 -850
  4. package/README.md +431 -431
  5. package/bin/rev.js +11 -11
  6. package/bin/rev.ts +145 -145
  7. package/completions/rev.bash +127 -127
  8. package/completions/rev.ps1 +210 -210
  9. package/completions/rev.zsh +207 -207
  10. package/dist/lib/anchor-match.d.ts +4 -2
  11. package/dist/lib/anchor-match.d.ts.map +1 -1
  12. package/dist/lib/anchor-match.js +52 -24
  13. package/dist/lib/anchor-match.js.map +1 -1
  14. package/dist/lib/annotations.d.ts +0 -6
  15. package/dist/lib/annotations.d.ts.map +1 -1
  16. package/dist/lib/annotations.js +26 -8
  17. package/dist/lib/annotations.js.map +1 -1
  18. package/dist/lib/build.d.ts.map +1 -1
  19. package/dist/lib/build.js +13 -10
  20. package/dist/lib/build.js.map +1 -1
  21. package/dist/lib/commands/build.d.ts.map +1 -1
  22. package/dist/lib/commands/build.js +5 -0
  23. package/dist/lib/commands/build.js.map +1 -1
  24. package/dist/lib/commands/doi.d.ts.map +1 -1
  25. package/dist/lib/commands/doi.js +14 -2
  26. package/dist/lib/commands/doi.js.map +1 -1
  27. package/dist/lib/commands/sync.d.ts.map +1 -1
  28. package/dist/lib/commands/sync.js +98 -107
  29. package/dist/lib/commands/sync.js.map +1 -1
  30. package/dist/lib/commands/utilities.js +164 -164
  31. package/dist/lib/commands/word-tools.js +8 -8
  32. package/dist/lib/comment-realign.d.ts +12 -21
  33. package/dist/lib/comment-realign.d.ts.map +1 -1
  34. package/dist/lib/comment-realign.js +40 -348
  35. package/dist/lib/comment-realign.js.map +1 -1
  36. package/dist/lib/dependencies.d.ts +10 -0
  37. package/dist/lib/dependencies.d.ts.map +1 -1
  38. package/dist/lib/dependencies.js +41 -9
  39. package/dist/lib/dependencies.js.map +1 -1
  40. package/dist/lib/doi.d.ts.map +1 -1
  41. package/dist/lib/doi.js +68 -80
  42. package/dist/lib/doi.js.map +1 -1
  43. package/dist/lib/errors.d.ts.map +1 -1
  44. package/dist/lib/errors.js +3 -1
  45. package/dist/lib/errors.js.map +1 -1
  46. package/dist/lib/grammar.js +3 -3
  47. package/dist/lib/import.d.ts +7 -4
  48. package/dist/lib/import.d.ts.map +1 -1
  49. package/dist/lib/import.js +58 -62
  50. package/dist/lib/import.js.map +1 -1
  51. package/dist/lib/macro-filter.lua +201 -201
  52. package/dist/lib/ooxml.d.ts +207 -0
  53. package/dist/lib/ooxml.d.ts.map +1 -0
  54. package/dist/lib/ooxml.js +634 -0
  55. package/dist/lib/ooxml.js.map +1 -0
  56. package/dist/lib/pdf-comments.js +44 -44
  57. package/dist/lib/plugins.js +57 -57
  58. package/dist/lib/pptx-color-filter.lua +37 -37
  59. package/dist/lib/pptx-themes.js +115 -115
  60. package/dist/lib/rate-limiter.d.ts +8 -0
  61. package/dist/lib/rate-limiter.d.ts.map +1 -1
  62. package/dist/lib/rate-limiter.js +41 -4
  63. package/dist/lib/rate-limiter.js.map +1 -1
  64. package/dist/lib/sections.d.ts.map +1 -1
  65. package/dist/lib/sections.js +5 -2
  66. package/dist/lib/sections.js.map +1 -1
  67. package/dist/lib/spelling.js +2 -2
  68. package/dist/lib/templates.js +387 -387
  69. package/dist/lib/themes.js +51 -51
  70. package/dist/lib/types.d.ts +9 -1
  71. package/dist/lib/types.d.ts.map +1 -1
  72. package/dist/lib/word-extraction.d.ts.map +1 -1
  73. package/dist/lib/word-extraction.js +48 -307
  74. package/dist/lib/word-extraction.js.map +1 -1
  75. package/dist/lib/word.d.ts.map +1 -1
  76. package/dist/lib/word.js +80 -175
  77. package/dist/lib/word.js.map +1 -1
  78. package/dist/lib/wordcomments.d.ts.map +1 -1
  79. package/dist/lib/wordcomments.js +53 -92
  80. package/dist/lib/wordcomments.js.map +1 -1
  81. package/docs-src/build.py +113 -113
  82. package/docs-src/extra.css +208 -208
  83. package/docs-src/md-to-html.lua +6 -6
  84. package/docs-src/template.html +116 -116
  85. package/eslint.config.js +27 -27
  86. package/lib/anchor-match.ts +307 -276
  87. package/lib/annotations.ts +664 -644
  88. package/lib/build.ts +1770 -1766
  89. package/lib/citations.ts +160 -160
  90. package/lib/commands/build.ts +860 -855
  91. package/lib/commands/citations.ts +515 -515
  92. package/lib/commands/comments.ts +1050 -1050
  93. package/lib/commands/context.ts +176 -176
  94. package/lib/commands/core.ts +309 -309
  95. package/lib/commands/doi.ts +451 -435
  96. package/lib/commands/file-ops.ts +372 -372
  97. package/lib/commands/history.ts +320 -320
  98. package/lib/commands/index.ts +87 -87
  99. package/lib/commands/init.ts +259 -259
  100. package/lib/commands/merge-resolve.ts +378 -378
  101. package/lib/commands/preview.ts +178 -178
  102. package/lib/commands/project-info.ts +244 -244
  103. package/lib/commands/quality.ts +517 -517
  104. package/lib/commands/response.ts +454 -454
  105. package/lib/commands/section-boundaries.ts +82 -82
  106. package/lib/commands/sections.ts +451 -451
  107. package/lib/commands/sync.ts +689 -709
  108. package/lib/commands/text-ops.ts +449 -449
  109. package/lib/commands/utilities.ts +448 -448
  110. package/lib/commands/verify-anchors.ts +272 -272
  111. package/lib/commands/word-tools.ts +340 -340
  112. package/lib/comment-realign.ts +99 -517
  113. package/lib/config.ts +84 -84
  114. package/lib/crossref.ts +781 -781
  115. package/lib/csl.ts +191 -191
  116. package/lib/dependencies.ts +132 -98
  117. package/lib/diff-engine.ts +465 -465
  118. package/lib/doi-cache.ts +115 -115
  119. package/lib/doi.ts +879 -897
  120. package/lib/equations.ts +506 -506
  121. package/lib/errors.ts +350 -346
  122. package/lib/format.ts +541 -541
  123. package/lib/git.ts +326 -326
  124. package/lib/grammar.ts +303 -303
  125. package/lib/image-registry.ts +180 -180
  126. package/lib/import.ts +906 -911
  127. package/lib/journals.ts +543 -543
  128. package/lib/macro-filter.lua +201 -201
  129. package/lib/macros.ts +273 -273
  130. package/lib/merge.ts +633 -633
  131. package/lib/ooxml.ts +768 -0
  132. package/lib/orcid.ts +144 -144
  133. package/lib/pdf-comments.ts +263 -263
  134. package/lib/pdf-import.ts +524 -524
  135. package/lib/plugins.ts +362 -362
  136. package/lib/postprocess.ts +188 -188
  137. package/lib/pptx-color-filter.lua +37 -37
  138. package/lib/pptx-template.ts +469 -469
  139. package/lib/pptx-themes.ts +483 -483
  140. package/lib/protect-restore.ts +520 -520
  141. package/lib/rate-limiter.ts +127 -94
  142. package/lib/response.ts +197 -197
  143. package/lib/restore-references.ts +240 -240
  144. package/lib/review.ts +327 -327
  145. package/lib/schema.ts +488 -488
  146. package/lib/scientific-words.ts +73 -73
  147. package/lib/sections.ts +428 -425
  148. package/lib/slides.ts +756 -756
  149. package/lib/spelling.ts +334 -334
  150. package/lib/templates.ts +526 -526
  151. package/lib/themes.ts +742 -742
  152. package/lib/trackchanges.ts +247 -247
  153. package/lib/tui.ts +450 -450
  154. package/lib/types.ts +558 -550
  155. package/lib/undo.ts +250 -250
  156. package/lib/utils.ts +69 -69
  157. package/lib/variables.ts +179 -179
  158. package/lib/word-extraction.ts +525 -806
  159. package/lib/word.ts +526 -643
  160. package/lib/wordcomments.ts +789 -840
  161. package/mkdocs.yml +64 -64
  162. package/package.json +137 -137
  163. package/scripts/postbuild.js +47 -47
  164. package/skill/REFERENCE.md +539 -539
  165. package/skill/SKILL.md +295 -295
  166. package/tsconfig.json +26 -26
  167. package/types/index.d.ts +525 -525
@@ -1,259 +1,259 @@
1
- /**
2
- * Init commands: init, new, config
3
- *
4
- * Project initialization and configuration commands.
5
- */
6
-
7
- import type { Command } from 'commander';
8
- import {
9
- chalk,
10
- fs,
11
- path,
12
- fmt,
13
- generateConfig,
14
- loadConfig,
15
- saveConfig,
16
- getTemplate,
17
- listTemplates,
18
- generateCustomTemplate,
19
- getUserName,
20
- setUserName,
21
- getConfigPath,
22
- getDefaultSections,
23
- setDefaultSections,
24
- } from './context.js';
25
-
26
- interface InitOptions {
27
- dir: string;
28
- output: string;
29
- force?: boolean;
30
- }
31
-
32
- interface NewOptions {
33
- template: string;
34
- sections?: string;
35
- list?: boolean;
36
- }
37
-
38
- /**
39
- * Register init commands with the program
40
- */
41
- export function register(program: Command): void {
42
- // ==========================================================================
43
- // INIT command - Generate sections.yaml config
44
- // ==========================================================================
45
-
46
- program
47
- .command('init')
48
- .description('Generate sections.yaml from existing .md files')
49
- .option('-d, --dir <directory>', 'Directory to scan', '.')
50
- .option('-o, --output <file>', 'Output config file', 'sections.yaml')
51
- .option('--force', 'Overwrite existing config')
52
- .action((options: InitOptions) => {
53
- const dir = path.resolve(options.dir);
54
-
55
- if (!fs.existsSync(dir)) {
56
- console.error(chalk.red(`Directory not found: ${dir}`));
57
- process.exit(1);
58
- }
59
-
60
- const outputPath = path.resolve(options.dir, options.output);
61
-
62
- if (fs.existsSync(outputPath) && !options.force) {
63
- console.error(chalk.yellow(`Config already exists: ${outputPath}`));
64
- console.error(chalk.dim('Use --force to overwrite'));
65
- process.exit(1);
66
- }
67
-
68
- console.log(chalk.cyan(`Scanning ${dir} for .md files...`));
69
-
70
- const config = generateConfig(dir);
71
- const sectionCount = Object.keys(config.sections).length;
72
-
73
- if (sectionCount === 0) {
74
- console.error(chalk.yellow('No .md files found (excluding paper.md, README.md)'));
75
- process.exit(1);
76
- }
77
-
78
- saveConfig(outputPath, config);
79
-
80
- console.log(chalk.green(`\nCreated ${outputPath} with ${sectionCount} sections:\n`));
81
-
82
- for (const [file, section] of Object.entries(config.sections)) {
83
- console.log(` ${chalk.bold(file)}`);
84
- console.log(chalk.dim(` header: "${section.header}"`));
85
- if (section.aliases && section.aliases.length > 0) {
86
- console.log(chalk.dim(` aliases: ${JSON.stringify(section.aliases)}`));
87
- }
88
- }
89
-
90
- console.log(chalk.cyan('\nEdit this file to:'));
91
- console.log(chalk.dim(' • Add aliases for header variations'));
92
- console.log(chalk.dim(' • Adjust order if needed'));
93
- console.log(chalk.dim(' • Update headers if they change'));
94
- });
95
-
96
- // ==========================================================================
97
- // NEW command - Create new paper project
98
- // ==========================================================================
99
-
100
- program
101
- .command('new')
102
- .description('Create a new paper project from template')
103
- .argument('[name]', 'Project directory name')
104
- .option('-t, --template <name>', 'Template: paper, minimal, thesis, review', 'paper')
105
- .option('-s, --sections <sections>', 'Comma-separated section names (e.g., intro,methods,results)')
106
- .option('--list', 'List available templates')
107
- .action(async (name: string | undefined, options: NewOptions) => {
108
- if (options.list) {
109
- console.log(chalk.cyan('Available templates:\n'));
110
- for (const t of listTemplates()) {
111
- console.log(` ${chalk.bold(t.id)} - ${t.description}`);
112
- }
113
- return;
114
- }
115
-
116
- if (!name) {
117
- console.error(chalk.red('Error: project name is required'));
118
- console.error(chalk.dim('Usage: rev new <name>'));
119
- process.exit(1);
120
- }
121
-
122
- const projectDir = path.resolve(name);
123
-
124
- if (fs.existsSync(projectDir)) {
125
- console.error(chalk.red(`Directory already exists: ${name}`));
126
- process.exit(1);
127
- }
128
-
129
- let template;
130
- let sections: string[] | null = null;
131
-
132
- // Determine sections: CLI option > user config > prompt
133
- if (options.sections) {
134
- // Parse CLI sections
135
- sections = options.sections.split(',').map((s) => s.trim().toLowerCase().replace(/\.md$/, ''));
136
- } else {
137
- // Check user config for default sections
138
- const defaultSections = getDefaultSections();
139
- if (defaultSections && defaultSections.length > 0) {
140
- sections = defaultSections;
141
- }
142
- }
143
-
144
- // If no sections from CLI or config, and not using a named template with --template, prompt
145
- // Only prompt if stdin is a TTY (interactive terminal)
146
- if (!sections && options.template === 'paper') {
147
- if (process.stdin.isTTY) {
148
- const rl = (await import('readline')).createInterface({
149
- input: process.stdin,
150
- output: process.stdout,
151
- });
152
-
153
- const ask = (prompt: string): Promise<string> => new Promise((resolve) => rl.question(prompt, resolve));
154
-
155
- console.log(chalk.cyan('Enter your document sections (comma-separated):'));
156
- console.log(chalk.dim(' Example: introduction,methods,results,discussion'));
157
- console.log(chalk.dim(' Press Enter to use default: introduction,methods,results,discussion\n'));
158
-
159
- const answer = await ask(chalk.cyan('Sections: '));
160
- rl.close();
161
-
162
- if (answer.trim()) {
163
- sections = answer.split(',').map((s) => s.trim().toLowerCase().replace(/\.md$/, ''));
164
- } else {
165
- // Use default paper template sections
166
- sections = ['introduction', 'methods', 'results', 'discussion'];
167
- }
168
- } else {
169
- // Non-interactive: use default sections
170
- sections = ['introduction', 'methods', 'results', 'discussion'];
171
- }
172
- }
173
-
174
- // Generate template based on sections
175
- if (sections) {
176
- template = generateCustomTemplate(sections);
177
- console.log(chalk.cyan(`Creating project with sections: ${sections.join(', ')}\n`));
178
- } else {
179
- template = getTemplate(options.template);
180
- if (!template) {
181
- console.error(chalk.red(`Unknown template: ${options.template}`));
182
- console.error(chalk.dim('Use --list to see available templates.'));
183
- process.exit(1);
184
- }
185
- console.log(chalk.cyan(`Creating ${template.name} project in ${name}/...\n`));
186
- }
187
-
188
- // Create directory
189
- fs.mkdirSync(projectDir, { recursive: true });
190
-
191
- // Create subdirectories
192
- for (const subdir of template.directories || []) {
193
- fs.mkdirSync(path.join(projectDir, subdir), { recursive: true });
194
- console.log(chalk.dim(` Created ${subdir}/`));
195
- }
196
-
197
- // Create files
198
- for (const [filename, content] of Object.entries(template.files)) {
199
- const filePath = path.join(projectDir, filename);
200
- fs.writeFileSync(filePath, content, 'utf-8');
201
- console.log(chalk.dim(` Created ${filename}`));
202
- }
203
-
204
- console.log(chalk.green(`\nProject created!`));
205
- console.log(chalk.cyan('\nNext steps:'));
206
- console.log(chalk.dim(` cd ${name}`));
207
- console.log(chalk.dim(' # Edit rev.yaml with your paper details'));
208
- console.log(chalk.dim(' # Write your sections'));
209
- console.log(chalk.dim(' rev build # Build PDF and DOCX'));
210
- console.log(chalk.dim(' rev build pdf # Build PDF only'));
211
- });
212
-
213
- // ==========================================================================
214
- // CONFIG command - Set user preferences
215
- // ==========================================================================
216
-
217
- program
218
- .command('config')
219
- .description('Set user preferences')
220
- .argument('<key>', 'Config key: user, sections')
221
- .argument('[value]', 'Value to set')
222
- .action((key: string, value?: string) => {
223
- if (key === 'user') {
224
- if (value) {
225
- setUserName(value);
226
- console.log(chalk.green(`User name set to: ${value}`));
227
- console.log(chalk.dim(`Saved to ${getConfigPath()}`));
228
- } else {
229
- const name = getUserName();
230
- if (name) {
231
- console.log(`Current user: ${chalk.bold(name)}`);
232
- } else {
233
- console.log(chalk.yellow('No user name set.'));
234
- console.log(chalk.dim('Set with: rev config user "Your Name"'));
235
- }
236
- }
237
- } else if (key === 'sections') {
238
- if (value) {
239
- const sections = value.split(',').map((s) => s.trim().toLowerCase().replace(/\.md$/, ''));
240
- setDefaultSections(sections);
241
- console.log(chalk.green(`Default sections set to: ${sections.join(', ')}`));
242
- console.log(chalk.dim(`Saved to ${getConfigPath()}`));
243
- } else {
244
- const sections = getDefaultSections();
245
- if (sections && sections.length > 0) {
246
- console.log(`Default sections: ${chalk.bold(sections.join(', '))}`);
247
- } else {
248
- console.log(chalk.yellow('No default sections set.'));
249
- console.log(chalk.dim('Set with: rev config sections "intro,methods,results,discussion"'));
250
- console.log(chalk.dim('When not set, rev new will prompt for sections.'));
251
- }
252
- }
253
- } else {
254
- console.error(chalk.red(`Unknown config key: ${key}`));
255
- console.error(chalk.dim('Available keys: user, sections'));
256
- process.exit(1);
257
- }
258
- });
259
- }
1
+ /**
2
+ * Init commands: init, new, config
3
+ *
4
+ * Project initialization and configuration commands.
5
+ */
6
+
7
+ import type { Command } from 'commander';
8
+ import {
9
+ chalk,
10
+ fs,
11
+ path,
12
+ fmt,
13
+ generateConfig,
14
+ loadConfig,
15
+ saveConfig,
16
+ getTemplate,
17
+ listTemplates,
18
+ generateCustomTemplate,
19
+ getUserName,
20
+ setUserName,
21
+ getConfigPath,
22
+ getDefaultSections,
23
+ setDefaultSections,
24
+ } from './context.js';
25
+
26
+ interface InitOptions {
27
+ dir: string;
28
+ output: string;
29
+ force?: boolean;
30
+ }
31
+
32
+ interface NewOptions {
33
+ template: string;
34
+ sections?: string;
35
+ list?: boolean;
36
+ }
37
+
38
+ /**
39
+ * Register init commands with the program
40
+ */
41
+ export function register(program: Command): void {
42
+ // ==========================================================================
43
+ // INIT command - Generate sections.yaml config
44
+ // ==========================================================================
45
+
46
+ program
47
+ .command('init')
48
+ .description('Generate sections.yaml from existing .md files')
49
+ .option('-d, --dir <directory>', 'Directory to scan', '.')
50
+ .option('-o, --output <file>', 'Output config file', 'sections.yaml')
51
+ .option('--force', 'Overwrite existing config')
52
+ .action((options: InitOptions) => {
53
+ const dir = path.resolve(options.dir);
54
+
55
+ if (!fs.existsSync(dir)) {
56
+ console.error(chalk.red(`Directory not found: ${dir}`));
57
+ process.exit(1);
58
+ }
59
+
60
+ const outputPath = path.resolve(options.dir, options.output);
61
+
62
+ if (fs.existsSync(outputPath) && !options.force) {
63
+ console.error(chalk.yellow(`Config already exists: ${outputPath}`));
64
+ console.error(chalk.dim('Use --force to overwrite'));
65
+ process.exit(1);
66
+ }
67
+
68
+ console.log(chalk.cyan(`Scanning ${dir} for .md files...`));
69
+
70
+ const config = generateConfig(dir);
71
+ const sectionCount = Object.keys(config.sections).length;
72
+
73
+ if (sectionCount === 0) {
74
+ console.error(chalk.yellow('No .md files found (excluding paper.md, README.md)'));
75
+ process.exit(1);
76
+ }
77
+
78
+ saveConfig(outputPath, config);
79
+
80
+ console.log(chalk.green(`\nCreated ${outputPath} with ${sectionCount} sections:\n`));
81
+
82
+ for (const [file, section] of Object.entries(config.sections)) {
83
+ console.log(` ${chalk.bold(file)}`);
84
+ console.log(chalk.dim(` header: "${section.header}"`));
85
+ if (section.aliases && section.aliases.length > 0) {
86
+ console.log(chalk.dim(` aliases: ${JSON.stringify(section.aliases)}`));
87
+ }
88
+ }
89
+
90
+ console.log(chalk.cyan('\nEdit this file to:'));
91
+ console.log(chalk.dim(' • Add aliases for header variations'));
92
+ console.log(chalk.dim(' • Adjust order if needed'));
93
+ console.log(chalk.dim(' • Update headers if they change'));
94
+ });
95
+
96
+ // ==========================================================================
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+ // NEW command - Create new paper project
98
+ // ==========================================================================
99
+
100
+ program
101
+ .command('new')
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+ .description('Create a new paper project from template')
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+ .argument('[name]', 'Project directory name')
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+ .option('-t, --template <name>', 'Template: paper, minimal, thesis, review', 'paper')
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+ .option('-s, --sections <sections>', 'Comma-separated section names (e.g., intro,methods,results)')
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+ .option('--list', 'List available templates')
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+ .action(async (name: string | undefined, options: NewOptions) => {
108
+ if (options.list) {
109
+ console.log(chalk.cyan('Available templates:\n'));
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+ for (const t of listTemplates()) {
111
+ console.log(` ${chalk.bold(t.id)} - ${t.description}`);
112
+ }
113
+ return;
114
+ }
115
+
116
+ if (!name) {
117
+ console.error(chalk.red('Error: project name is required'));
118
+ console.error(chalk.dim('Usage: rev new <name>'));
119
+ process.exit(1);
120
+ }
121
+
122
+ const projectDir = path.resolve(name);
123
+
124
+ if (fs.existsSync(projectDir)) {
125
+ console.error(chalk.red(`Directory already exists: ${name}`));
126
+ process.exit(1);
127
+ }
128
+
129
+ let template;
130
+ let sections: string[] | null = null;
131
+
132
+ // Determine sections: CLI option > user config > prompt
133
+ if (options.sections) {
134
+ // Parse CLI sections
135
+ sections = options.sections.split(',').map((s) => s.trim().toLowerCase().replace(/\.md$/, ''));
136
+ } else {
137
+ // Check user config for default sections
138
+ const defaultSections = getDefaultSections();
139
+ if (defaultSections && defaultSections.length > 0) {
140
+ sections = defaultSections;
141
+ }
142
+ }
143
+
144
+ // If no sections from CLI or config, and not using a named template with --template, prompt
145
+ // Only prompt if stdin is a TTY (interactive terminal)
146
+ if (!sections && options.template === 'paper') {
147
+ if (process.stdin.isTTY) {
148
+ const rl = (await import('readline')).createInterface({
149
+ input: process.stdin,
150
+ output: process.stdout,
151
+ });
152
+
153
+ const ask = (prompt: string): Promise<string> => new Promise((resolve) => rl.question(prompt, resolve));
154
+
155
+ console.log(chalk.cyan('Enter your document sections (comma-separated):'));
156
+ console.log(chalk.dim(' Example: introduction,methods,results,discussion'));
157
+ console.log(chalk.dim(' Press Enter to use default: introduction,methods,results,discussion\n'));
158
+
159
+ const answer = await ask(chalk.cyan('Sections: '));
160
+ rl.close();
161
+
162
+ if (answer.trim()) {
163
+ sections = answer.split(',').map((s) => s.trim().toLowerCase().replace(/\.md$/, ''));
164
+ } else {
165
+ // Use default paper template sections
166
+ sections = ['introduction', 'methods', 'results', 'discussion'];
167
+ }
168
+ } else {
169
+ // Non-interactive: use default sections
170
+ sections = ['introduction', 'methods', 'results', 'discussion'];
171
+ }
172
+ }
173
+
174
+ // Generate template based on sections
175
+ if (sections) {
176
+ template = generateCustomTemplate(sections);
177
+ console.log(chalk.cyan(`Creating project with sections: ${sections.join(', ')}\n`));
178
+ } else {
179
+ template = getTemplate(options.template);
180
+ if (!template) {
181
+ console.error(chalk.red(`Unknown template: ${options.template}`));
182
+ console.error(chalk.dim('Use --list to see available templates.'));
183
+ process.exit(1);
184
+ }
185
+ console.log(chalk.cyan(`Creating ${template.name} project in ${name}/...\n`));
186
+ }
187
+
188
+ // Create directory
189
+ fs.mkdirSync(projectDir, { recursive: true });
190
+
191
+ // Create subdirectories
192
+ for (const subdir of template.directories || []) {
193
+ fs.mkdirSync(path.join(projectDir, subdir), { recursive: true });
194
+ console.log(chalk.dim(` Created ${subdir}/`));
195
+ }
196
+
197
+ // Create files
198
+ for (const [filename, content] of Object.entries(template.files)) {
199
+ const filePath = path.join(projectDir, filename);
200
+ fs.writeFileSync(filePath, content, 'utf-8');
201
+ console.log(chalk.dim(` Created ${filename}`));
202
+ }
203
+
204
+ console.log(chalk.green(`\nProject created!`));
205
+ console.log(chalk.cyan('\nNext steps:'));
206
+ console.log(chalk.dim(` cd ${name}`));
207
+ console.log(chalk.dim(' # Edit rev.yaml with your paper details'));
208
+ console.log(chalk.dim(' # Write your sections'));
209
+ console.log(chalk.dim(' rev build # Build PDF and DOCX'));
210
+ console.log(chalk.dim(' rev build pdf # Build PDF only'));
211
+ });
212
+
213
+ // ==========================================================================
214
+ // CONFIG command - Set user preferences
215
+ // ==========================================================================
216
+
217
+ program
218
+ .command('config')
219
+ .description('Set user preferences')
220
+ .argument('<key>', 'Config key: user, sections')
221
+ .argument('[value]', 'Value to set')
222
+ .action((key: string, value?: string) => {
223
+ if (key === 'user') {
224
+ if (value) {
225
+ setUserName(value);
226
+ console.log(chalk.green(`User name set to: ${value}`));
227
+ console.log(chalk.dim(`Saved to ${getConfigPath()}`));
228
+ } else {
229
+ const name = getUserName();
230
+ if (name) {
231
+ console.log(`Current user: ${chalk.bold(name)}`);
232
+ } else {
233
+ console.log(chalk.yellow('No user name set.'));
234
+ console.log(chalk.dim('Set with: rev config user "Your Name"'));
235
+ }
236
+ }
237
+ } else if (key === 'sections') {
238
+ if (value) {
239
+ const sections = value.split(',').map((s) => s.trim().toLowerCase().replace(/\.md$/, ''));
240
+ setDefaultSections(sections);
241
+ console.log(chalk.green(`Default sections set to: ${sections.join(', ')}`));
242
+ console.log(chalk.dim(`Saved to ${getConfigPath()}`));
243
+ } else {
244
+ const sections = getDefaultSections();
245
+ if (sections && sections.length > 0) {
246
+ console.log(`Default sections: ${chalk.bold(sections.join(', '))}`);
247
+ } else {
248
+ console.log(chalk.yellow('No default sections set.'));
249
+ console.log(chalk.dim('Set with: rev config sections "intro,methods,results,discussion"'));
250
+ console.log(chalk.dim('When not set, rev new will prompt for sections.'));
251
+ }
252
+ }
253
+ } else {
254
+ console.error(chalk.red(`Unknown config key: ${key}`));
255
+ console.error(chalk.dim('Available keys: user, sections'));
256
+ process.exit(1);
257
+ }
258
+ });
259
+ }