agentsys 5.0.0

package/adapters/codex/skills/audit-project-agents/SKILL.md

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+<!-- AUTO-GENERATED by scripts/gen-adapters.js - DO NOT EDIT -->
+---
+name: audit-project-agents
+description: "Use when coordinating multi-agent review passes in /audit-project. Details agent specialization, file filtering, and review queue handling."
+---
+
+# Phase 2: Multi-Agent Review - Reference
+
+This file contains detailed agent coordination for `/audit-project`.
+
+**Parent document**: `audit-project.md`
+
+**Review Pass Definitions**: See `orchestrate-review` skill for canonical pass definitions (core + conditional). This command uses the same review passes but detects signals from project structure (not just changed files).
+
+## Agent Specialization
+
+### File Filtering by Agent
+
+Each agent reviews only relevant files:
+
+| Agent | File Patterns |
+|-------|--------------|
+| code-quality-reviewer | All source files (includes error handling) |
+| security-expert | Auth, validation, API endpoints, config |
+| performance-engineer | Hot paths, algorithms, loops, queries |
+| test-quality-guardian | Test files + missing-test signals |
+| architecture-reviewer | Cross-module boundaries, core packages |
+| database-specialist | Models, queries, migrations |
+| api-designer | API routes, controllers, handlers |
+| frontend-specialist | Components, state management |
+| backend-specialist | Services, domain logic, queues |
+| devops-reviewer | CI/CD configs, Dockerfiles |
+
+## Review Queue File
+
+Create a temporary review queue file in the platform state dir. Review passes append JSONL or return JSON for the parent to write.
+
+```javascript
+const path = require('path');
+const fs = require('fs');
+const { getPluginRoot } = require('@agentsys/lib/cross-platform');
+const pluginRoot = getPluginRoot('audit-project');
+if (!pluginRoot) { console.error('Error: Could not locate audit-project plugin root'); process.exit(1); }
+const { getStateDirPath } = require(`${pluginRoot}/lib/platform/state-dir.js`);
+
+const stateDirPath = getStateDirPath(process.cwd());
+if (!fs.existsSync(stateDirPath)) {
+  fs.mkdirSync(stateDirPath, { recursive: true });
+}
+
+function findLatestQueue(dirPath) {
+  const files = fs.readdirSync(dirPath)
+    .filter(name => name.startsWith('review-queue-') && name.endsWith('.json'))
+    .map(name => ({
+      name,
+      fullPath: path.join(dirPath, name),
+      mtime: fs.statSync(path.join(dirPath, name)).mtimeMs
+    }))
+    .sort((a, b) => b.mtime - a.mtime);
+  return files[0]?.fullPath || null;
+}
+
+function safeReadJson(filePath) {
+  try {
+    return JSON.parse(fs.readFileSync(filePath, 'utf8'));
+  } catch (error) {
+    console.warn(`Review queue unreadable: ${filePath}. Starting fresh.`);
+    return null;
+  }
+}
+
+const resumeRequested = typeof RESUME_MODE !== 'undefined' && RESUME_MODE === 'true';
+let reviewQueuePath = resumeRequested ? findLatestQueue(stateDirPath) : null;
+
+if (!reviewQueuePath) {
+  reviewQueuePath = path.join(stateDirPath, `review-queue-${Date.now()}.json`);
+}
+
+if (!fs.existsSync(reviewQueuePath)) {
+  const reviewQueue = {
+    status: 'open',
+    scope: { type: 'audit', value: SCOPE },
+    passes: [],
+    items: [],
+    iteration: 0,
+    updatedAt: new Date().toISOString()
+  };
+  fs.writeFileSync(reviewQueuePath, JSON.stringify(reviewQueue, null, 2), 'utf8');
+} else if (resumeRequested) {
+  const reviewQueue = safeReadJson(reviewQueuePath) || {
+    status: 'open',
+    scope: { type: 'audit', value: SCOPE },
+    passes: [],
+    items: [],
+    iteration: 0,
+    updatedAt: new Date().toISOString()
+  };
+  reviewQueue.status = 'open';
+  reviewQueue.resumedAt = new Date().toISOString();
+  reviewQueue.updatedAt = new Date().toISOString();
+  fs.writeFileSync(reviewQueuePath, JSON.stringify(reviewQueue, null, 2), 'utf8');
+}
+```
+
+## Agent Coordination
+
+Use Task tool to launch agents in parallel:
+
+```javascript
+const agents = [];
+
+const baseReviewPrompt = (passId, role, focus) => `Role: ${role}.
+
+Scope: ${SCOPE}
+Framework: ${FRAMEWORK}
+
+Focus on:
+${focus.map(item => `- ${item}`).join('\n')}
+
+Write findings to ${reviewQueuePath} (append JSONL if possible). If you cannot write files, return JSON only.
+
+Return JSON ONLY in this format:
+{
+  "pass": "${passId}",
+  "findings": [
+    {
+      "file": "path/to/file.ts",
+      "line": 42,
+      "severity": "critical|high|medium|low",
+      "category": "${passId}",
+      "description": "Issue description",
+      "suggestion": "How to fix",
+      "confidence": "high|medium|low",
+      "falsePositive": false
+    }
+  ]
+}`;
+
+// Always active agents
+agents.push(Task({
+  subagent_type: "review",
+  prompt: baseReviewPrompt('code-quality', 'code quality reviewer', [
+    'Code style and consistency',
+    'Best practices violations',
+    'Potential bugs and logic errors',
+    'Error handling and failure paths',
+    'Maintainability issues',
+    'Code duplication'
+  ])
+}));
+
+agents.push(Task({
+  subagent_type: "review",
+  prompt: baseReviewPrompt('security', 'security reviewer', [
+    'Auth/authz flaws',
+    'Input validation and output encoding',
+    'Injection risks (SQL/command/template)',
+    'Secrets exposure and unsafe configs',
+    'Insecure defaults'
+  ])
+}));
+
+agents.push(Task({
+  subagent_type: "review",
+  prompt: baseReviewPrompt('performance', 'performance reviewer', [
+    'N+1 queries and inefficient loops',
+    'Blocking operations in async paths',
+    'Hot path inefficiencies',
+    'Memory leaks or unnecessary allocations'
+  ])
+}));
+
+agents.push(Task({
+  subagent_type: "review",
+  prompt: baseReviewPrompt('test-coverage', 'test coverage reviewer', [
+    'New code without corresponding tests',
+    'Missing edge case coverage',
+    'Test quality (meaningful assertions)',
+    'Integration test needs',
+    'Mock/stub appropriateness',
+    HAS_TESTS ? 'Existing tests: verify coverage depth' : 'No tests detected: report missing tests'
+  ])
+}));
+
+// Conditional agents
+if (FILE_COUNT > 50) {
+  agents.push(Task({
+    subagent_type: "review",
+    prompt: baseReviewPrompt('architecture', 'architecture reviewer', [
+      'Module boundaries and ownership',
+      'Dependency direction and layering',
+      'Cross-layer coupling',
+      'Consistency of patterns'
+    ])
+  }));
+}
+
+if (HAS_DB) {
+  agents.push(Task({
+    subagent_type: "review",
+    prompt: baseReviewPrompt('database', 'database specialist', [
+      'Query optimization and N+1 queries',
+      'Missing indexes',
+      'Transaction handling',
+      'Migration safety'
+    ])
+  }));
+}
+
+if (HAS_API) {
+  agents.push(Task({
+    subagent_type: "review",
+    prompt: baseReviewPrompt('api', 'api designer', [
+      'REST best practices',
+      'Error handling and status codes',
+      'Rate limiting and pagination',
+      'API versioning'
+    ])
+  }));
+}
+
+if (HAS_FRONTEND) {
+  agents.push(Task({
+    subagent_type: "review",
+    prompt: baseReviewPrompt('frontend', 'frontend specialist', [
+      'Component boundaries',
+      'State management patterns',
+      'Accessibility',
+      'Render performance'
+    ])
+  }));
+}
+
+if (HAS_BACKEND) {
+  agents.push(Task({
+    subagent_type: "review",
+    prompt: baseReviewPrompt('backend', 'backend specialist', [
+      'Service boundaries',
+      'Domain logic correctness',
+      'Concurrency and idempotency',
+      'Background job safety'
+    ])
+  }));
+}
+
+if (HAS_CICD) {
+  agents.push(Task({
+    subagent_type: "review",
+    prompt: baseReviewPrompt('devops', 'devops reviewer', [
+      'CI/CD safety',
+      'Secrets handling',
+      'Build/test pipelines',
+      'Deploy config correctness'
+    ])
+  }));
+}
+```
+
+## Finding Consolidation
+
+After all agents complete:
+
+```javascript
+function consolidateFindings(agentResults) {
+  const allFindings = [];
+
+  for (const result of agentResults) {
+    const pass = result.pass || 'unknown';
+    const findings = Array.isArray(result.findings) ? result.findings : [];
+    for (const finding of findings) {
+      allFindings.push({
+        id: `${pass}:${finding.file}:${finding.line}:${finding.description}`,
+        pass,
+        ...finding,
+        status: finding.falsePositive ? 'false-positive' : 'open'
+      });
+    }
+  }
+
+  // Deduplicate by pass:file:line:description
+  const seen = new Set();
+  const deduped = allFindings.filter(f => {
+    const key = `${f.pass}:${f.file}:${f.line}:${f.description}`;
+    if (seen.has(key)) return false;
+    seen.add(key);
+    return true;
+  });
+
+  // Sort by severity
+  const severityOrder = { critical: 0, high: 1, medium: 2, low: 3 };
+  deduped.sort((a, b) => {
+    const aRank = severityOrder[a.severity] ?? 99;
+    const bRank = severityOrder[b.severity] ?? 99;
+    return aRank - bRank;
+  });
+
+  // Update queue file
+  const queueState = safeReadJson(reviewQueuePath) || {
+    status: 'open',
+    scope: { type: 'audit', value: SCOPE },
+    passes: [],
+    items: [],
+    iteration: 0,
+    updatedAt: new Date().toISOString()
+  };
+  queueState.items = deduped;
+  queueState.passes = Array.from(new Set(deduped.map(item => item.pass)));
+  queueState.updatedAt = new Date().toISOString();
+  fs.writeFileSync(reviewQueuePath, JSON.stringify(queueState, null, 2), 'utf8');
+
+  // Group by file
+  const byFile = {};
+  for (const f of deduped) {
+    if (!byFile[f.file]) byFile[f.file] = [];
+    byFile[f.file].push(f);
+  }
+
+  return {
+    all: deduped,
+    byFile,
+    counts: {
+      critical: deduped.filter(f => f.severity === 'critical' && !f.falsePositive).length,
+      high: deduped.filter(f => f.severity === 'high' && !f.falsePositive).length,
+      medium: deduped.filter(f => f.severity === 'medium' && !f.falsePositive).length,
+      low: deduped.filter(f => f.severity === 'low' && !f.falsePositive).length
+    }
+  };
+}
+```
+
+## Queue Cleanup
+
+After fixes and re-review, remove the queue file if no open issues remain:
+
+```javascript
+const queueState = safeReadJson(reviewQueuePath);
+if (!queueState) {
+  return;
+}
+const openCount = queueState.items.filter(item => !item.falsePositive).length;
+if (openCount === 0) {
+  if (fs.existsSync(reviewQueuePath)) {
+    try {
+      fs.unlinkSync(reviewQueuePath);
+    } catch (error) {
+      if (error.code !== 'ENOENT') {
+        throw error;
+      }
+    }
+  }
+}
+```
+
+## Framework-Specific Patterns
+
+### React Patterns
+
+```javascript
+const reactPatterns = {
+  hooks_rules: {
+    description: "React hooks must be called at top level",
+    pattern: /use[A-Z]\w+\(/,
+    context: "inside conditionals or loops"
+  },
+  state_management: {
+    description: "Avoid prop drilling, use context or state management",
+    pattern: /props\.\w+\.\w+\.\w+/
+  },
+  performance: {
+    description: "Use memo/useMemo for expensive computations",
+    pattern: /\.map\(.*=>.*\.map\(/
+  }
+};
+```
+
+### Express Patterns
+
+```javascript
+const expressPatterns = {
+  error_handling: {
+    description: "Express routes must have error handling",
+    pattern: /app\.(get|post|put|delete)\(/,
+    check: "next(err) in catch block"
+  },
+  async_handlers: {
+    description: "Async handlers need try-catch or wrapper",
+    pattern: /async\s*\(req,\s*res/
+  }
+};
+```
+
+### Django Patterns
+
+```javascript
+const djangoPatterns = {
+  n_plus_one: {
+    description: "Use select_related/prefetch_related",
+    pattern: /\.objects\.(all|filter)\(\)/
+  },
+  raw_queries: {
+    description: "Avoid raw SQL, use ORM",
+    pattern: /\.raw\(|connection\.cursor\(\)/
+  }
+};
+```
+
+## Pattern Application
+
+```javascript
+function applyPatterns(findings, frameworkPatterns) {
+  if (!frameworkPatterns) return findings;
+
+  for (const pattern of Object.values(frameworkPatterns)) {
+    // Check each finding against framework patterns
+    for (const finding of findings) {
+      if (pattern.pattern.test(finding.codeQuote)) {
+        finding.frameworkContext = pattern.description;
+      }
+    }
+  }
+
+  return findings;
+}
+```
+
+## Review Output Format
+
+```markdown
+## Agent Reports
+
+### security-expert
+**Files Reviewed**: X
+**Issues Found**: Y (Z critical, A high)
+
+Findings:
+1. [Finding details with file:line]
+2. [Finding details with file:line]
+
+### performance-engineer
+**Files Reviewed**: X
+**Issues Found**: Y
+
+Findings:
+1. [Finding details with file:line]
+
+[... per agent]
+
+## Consolidated Summary
+
+**Total Issues**: X
+- Critical: Y (must fix)
+- High: Z (should fix)
+- Medium: A (consider)
+- Low: B (nice to have)
+
+**Top Files by Issue Count**:
+1. src/api/users.ts: 5 issues
+2. src/auth/session.ts: 3 issues
+```

package/adapters/codex/skills/audit-project-github/SKILL.md

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+<!-- AUTO-GENERATED by scripts/gen-adapters.js - DO NOT EDIT -->
+---
+name: audit-project-github
+description: "Create GitHub issues for non-security deferred findings identified by /audit-project."
+---
+
+# Phase 8: GitHub Issue Creation - Reference
+
+This file contains GitHub integration for `/audit-project`.
+
+**Parent document**: `audit-project.md`
+
+## Pre-Conditions
+
+```bash
+# Check if git and gh are available
+GIT_AVAILABLE=$(command -v git >/dev/null 2>&1 && echo "true" || echo "false")
+GH_AVAILABLE=$(command -v gh >/dev/null 2>&1 && echo "true" || echo "false")
+
+# Check if this is a GitHub repository
+IS_GITHUB_REPO="false"
+if [ "$GIT_AVAILABLE" = "true" ]; then
+  REMOTE_URL=$(git remote get-url origin 2>/dev/null || echo "")
+  if echo "$REMOTE_URL" | grep -q "github.com"; then
+    IS_GITHUB_REPO="true"
+  fi
+fi
+```
+
+## Creating GitHub Issues
+
+If `git` and `gh` are available, create issues for **non-security** deferred items:
+
+```bash
+if [ "$GH_AVAILABLE" = "true" ] && [ "$IS_GITHUB_REPO" = "true" ]; then
+  echo "Creating GitHub issues for deferred items..."
+
+  # DO NOT create public issues for security-sensitive findings
+  for issue in "${DEFERRED_NON_SECURITY_ISSUES[@]}"; do
+    gh issue create \
+      --title "${issue.title}" \
+      --body "${issue.body}"
+  done
+
+  echo "Created ${#DEFERRED_NON_SECURITY_ISSUES[@]} GitHub issues"
+fi
+```
+
+## Issue Format
+
+Each created issue includes:
+
+```markdown
+## Issue from /audit-project
+
+**Severity**: [Critical|High|Medium|Low]
+**Category**: [Performance|Architecture|Code Quality|Enhancement]
+**Effort**: [Small|Medium|Large] (~X hours)
+
+### Description
+[Description of the issue]
+
+### Current Behavior
+\`\`\`[language]
+[Code showing the problem]
+\`\`\`
+
+### Proposed Fix
+[Specific remediation approach]
+
+### Impact
+[Why this matters]
+
+### Files
+- [List of affected files]
+```
+
+## Security Issue Handling
+
+```
+
+  [WARN] SECURITY ISSUES MUST NOT BE PUBLIC
+
+  The following must NOT be created as GitHub issues:
+  - Token/credential exposure
+  - Authentication vulnerabilities
+  - Authorization bypasses
+  - Injection vulnerabilities
+  - Any exploitable security finding
+
+  For security issues:
+  1. Fix immediately if possible
+  2. Keep documented internally only
+  3. Note in completion report (no details)
+
+```
+
+## TECHNICAL_DEBT.md Cleanup
+
+After all issues are handled, remove TECHNICAL_DEBT.md:
+
+```bash
+if [ "$GH_AVAILABLE" = "true" ] && [ "$IS_GITHUB_REPO" = "true" ]; then
+  if [ -f "TECHNICAL_DEBT.md" ]; then
+    rm TECHNICAL_DEBT.md
+    git add TECHNICAL_DEBT.md
+    git commit -m "chore: remove TECHNICAL_DEBT.md - issues tracked in GitHub
+
+Created GitHub issues for all deferred non-security items.
+Security-sensitive issues kept internal."
+    echo "Removed TECHNICAL_DEBT.md - issues now in GitHub"
+  fi
+else
+  echo "TECHNICAL_DEBT.md retained - no GitHub integration"
+fi
+```
+
+## Cleanup Conditions
+
+**Remove TECHNICAL_DEBT.md when ALL true:**
+1. `git` is available
+2. `gh` CLI is available and authenticated
+3. Repository has GitHub remote
+4. All non-security issues created as GitHub issues
+
+**Keep TECHNICAL_DEBT.md when ANY true:**
+1. No GitHub integration available
+2. `gh` CLI not authenticated
+3. User requested `--create-tech-debt` flag
+4. Security issues exist
+
+## Final Commit
+
+If issues were created:
+
+```bash
+git add -A
+git commit -m "chore: audit-project complete - issues tracked in GitHub
+
+Created X GitHub issues for deferred items:
+- #N: [issue title]
+- #N: [issue title]
+
+Security-sensitive issues (Y total) kept internal.
+Fixed Z issues in this review session."
+```