agentsys 5.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1310) hide show
  1. package/.agnix.toml +49 -0
  2. package/.claude-plugin/marketplace.json +110 -0
  3. package/.claude-plugin/plugin.json +20 -0
  4. package/AGENTS.md +260 -0
  5. package/CHANGELOG.md +190 -0
  6. package/LICENSE +21 -0
  7. package/README.md +916 -0
  8. package/SECURITY.md +45 -0
  9. package/adapters/README.md +258 -0
  10. package/adapters/codex/README.md +273 -0
  11. package/adapters/codex/install.sh +260 -0
  12. package/adapters/codex/skills/agnix/SKILL.md +138 -0
  13. package/adapters/codex/skills/audit-project/SKILL.md +334 -0
  14. package/adapters/codex/skills/audit-project-agents/SKILL.md +459 -0
  15. package/adapters/codex/skills/audit-project-github/SKILL.md +146 -0
  16. package/adapters/codex/skills/consult/SKILL.md +245 -0
  17. package/adapters/codex/skills/delivery-approval/SKILL.md +339 -0
  18. package/adapters/codex/skills/deslop/SKILL.md +167 -0
  19. package/adapters/codex/skills/drift-detect/SKILL.md +268 -0
  20. package/adapters/codex/skills/enhance/SKILL.md +177 -0
  21. package/adapters/codex/skills/learn/SKILL.md +188 -0
  22. package/adapters/codex/skills/next-task/SKILL.md +546 -0
  23. package/adapters/codex/skills/perf/SKILL.md +469 -0
  24. package/adapters/codex/skills/repo-map/SKILL.md +132 -0
  25. package/adapters/codex/skills/ship/SKILL.md +491 -0
  26. package/adapters/codex/skills/ship-ci-review-loop/SKILL.md +473 -0
  27. package/adapters/codex/skills/ship-deployment/SKILL.md +336 -0
  28. package/adapters/codex/skills/ship-error-handling/SKILL.md +260 -0
  29. package/adapters/codex/skills/sync-docs/SKILL.md +186 -0
  30. package/adapters/opencode/README.md +302 -0
  31. package/adapters/opencode/agents/agent-enhancer.md +65 -0
  32. package/adapters/opencode/agents/agnix-agent.md +56 -0
  33. package/adapters/opencode/agents/ci-fixer.md +104 -0
  34. package/adapters/opencode/agents/ci-monitor.md +127 -0
  35. package/adapters/opencode/agents/claudemd-enhancer.md +66 -0
  36. package/adapters/opencode/agents/consult-agent.md +124 -0
  37. package/adapters/opencode/agents/cross-file-enhancer.md +54 -0
  38. package/adapters/opencode/agents/delivery-validator.md +115 -0
  39. package/adapters/opencode/agents/deslop-agent.md +88 -0
  40. package/adapters/opencode/agents/docs-enhancer.md +65 -0
  41. package/adapters/opencode/agents/exploration-agent.md +143 -0
  42. package/adapters/opencode/agents/hooks-enhancer.md +66 -0
  43. package/adapters/opencode/agents/implementation-agent.md +206 -0
  44. package/adapters/opencode/agents/learn-agent.md +279 -0
  45. package/adapters/opencode/agents/map-validator.md +65 -0
  46. package/adapters/opencode/agents/perf-analyzer.md +40 -0
  47. package/adapters/opencode/agents/perf-code-paths.md +12 -0
  48. package/adapters/opencode/agents/perf-investigation-logger.md +44 -0
  49. package/adapters/opencode/agents/perf-orchestrator.md +147 -0
  50. package/adapters/opencode/agents/perf-theory-gatherer.md +18 -0
  51. package/adapters/opencode/agents/perf-theory-tester.md +43 -0
  52. package/adapters/opencode/agents/plan-synthesizer.md +229 -0
  53. package/adapters/opencode/agents/planning-agent.md +235 -0
  54. package/adapters/opencode/agents/plugin-enhancer.md +64 -0
  55. package/adapters/opencode/agents/prompt-enhancer.md +58 -0
  56. package/adapters/opencode/agents/simple-fixer.md +107 -0
  57. package/adapters/opencode/agents/skills-enhancer.md +66 -0
  58. package/adapters/opencode/agents/sync-docs-agent.md +153 -0
  59. package/adapters/opencode/agents/task-discoverer.md +80 -0
  60. package/adapters/opencode/agents/test-coverage-checker.md +144 -0
  61. package/adapters/opencode/agents/worktree-manager.md +209 -0
  62. package/adapters/opencode/commands/agnix.md +106 -0
  63. package/adapters/opencode/commands/audit-project-agents.md +125 -0
  64. package/adapters/opencode/commands/audit-project-github.md +145 -0
  65. package/adapters/opencode/commands/audit-project.md +268 -0
  66. package/adapters/opencode/commands/consult.md +252 -0
  67. package/adapters/opencode/commands/delivery-approval.md +212 -0
  68. package/adapters/opencode/commands/deslop.md +132 -0
  69. package/adapters/opencode/commands/drift-detect.md +173 -0
  70. package/adapters/opencode/commands/enhance.md +183 -0
  71. package/adapters/opencode/commands/learn.md +116 -0
  72. package/adapters/opencode/commands/next-task.md +393 -0
  73. package/adapters/opencode/commands/perf.md +49 -0
  74. package/adapters/opencode/commands/repo-map.md +69 -0
  75. package/adapters/opencode/commands/ship-ci-review-loop.md +334 -0
  76. package/adapters/opencode/commands/ship-deployment.md +336 -0
  77. package/adapters/opencode/commands/ship-error-handling.md +248 -0
  78. package/adapters/opencode/commands/ship.md +371 -0
  79. package/adapters/opencode/commands/sync-docs.md +108 -0
  80. package/adapters/opencode/install.sh +322 -0
  81. package/adapters/opencode/skills/agnix/SKILL.md +139 -0
  82. package/adapters/opencode/skills/consult/SKILL.md +292 -0
  83. package/adapters/opencode/skills/deslop/SKILL.md +169 -0
  84. package/adapters/opencode/skills/discover-tasks/SKILL.md +102 -0
  85. package/adapters/opencode/skills/drift-analysis/SKILL.md +279 -0
  86. package/adapters/opencode/skills/enhance-agent-prompts/SKILL.md +279 -0
  87. package/adapters/opencode/skills/enhance-claude-memory/SKILL.md +390 -0
  88. package/adapters/opencode/skills/enhance-cross-file/SKILL.md +112 -0
  89. package/adapters/opencode/skills/enhance-docs/SKILL.md +288 -0
  90. package/adapters/opencode/skills/enhance-hooks/SKILL.md +557 -0
  91. package/adapters/opencode/skills/enhance-orchestrator/SKILL.md +114 -0
  92. package/adapters/opencode/skills/enhance-plugins/SKILL.md +314 -0
  93. package/adapters/opencode/skills/enhance-prompts/SKILL.md +341 -0
  94. package/adapters/opencode/skills/enhance-skills/SKILL.md +443 -0
  95. package/adapters/opencode/skills/learn/SKILL.md +352 -0
  96. package/adapters/opencode/skills/orchestrate-review/SKILL.md +95 -0
  97. package/adapters/opencode/skills/perf-analyzer/SKILL.md +38 -0
  98. package/adapters/opencode/skills/perf-baseline-manager/SKILL.md +31 -0
  99. package/adapters/opencode/skills/perf-benchmarker/SKILL.md +49 -0
  100. package/adapters/opencode/skills/perf-code-paths/SKILL.md +33 -0
  101. package/adapters/opencode/skills/perf-investigation-logger/SKILL.md +42 -0
  102. package/adapters/opencode/skills/perf-profiler/SKILL.md +39 -0
  103. package/adapters/opencode/skills/perf-theory-gatherer/SKILL.md +36 -0
  104. package/adapters/opencode/skills/perf-theory-tester/SKILL.md +37 -0
  105. package/adapters/opencode/skills/repo-mapping/SKILL.md +86 -0
  106. package/adapters/opencode/skills/sync-docs/SKILL.md +246 -0
  107. package/adapters/opencode/skills/validate-delivery/SKILL.md +112 -0
  108. package/adapters/opencode-plugin/index.ts +346 -0
  109. package/adapters/opencode-plugin/package.json +21 -0
  110. package/agent-knowledge/AGENTS.md +62 -0
  111. package/agent-knowledge/ai-cli-advanced-integration-patterns.md +670 -0
  112. package/agent-knowledge/ai-cli-non-interactive-programmatic-usage.md +1394 -0
  113. package/agent-knowledge/resources/ai-cli-non-interactive-programmatic-usage-sources.json +500 -0
  114. package/bin/cli.js +719 -0
  115. package/bin/dev-cli.js +587 -0
  116. package/lib/adapter-transforms.js +278 -0
  117. package/lib/collectors/codebase.js +392 -0
  118. package/lib/collectors/docs-patterns.js +713 -0
  119. package/lib/collectors/documentation.js +219 -0
  120. package/lib/collectors/github.js +266 -0
  121. package/lib/collectors/index.js +126 -0
  122. package/lib/config/index.js +14 -0
  123. package/lib/cross-platform/index.js +539 -0
  124. package/lib/discovery/index.js +352 -0
  125. package/lib/drift-detect/collectors.js +37 -0
  126. package/lib/enhance/agent-analyzer.js +421 -0
  127. package/lib/enhance/agent-patterns.js +571 -0
  128. package/lib/enhance/auto-suppression.js +622 -0
  129. package/lib/enhance/benchmark.js +417 -0
  130. package/lib/enhance/cross-file-analyzer.js +930 -0
  131. package/lib/enhance/cross-file-patterns.js +370 -0
  132. package/lib/enhance/docs-analyzer.js +325 -0
  133. package/lib/enhance/docs-patterns.js +671 -0
  134. package/lib/enhance/fixer.js +721 -0
  135. package/lib/enhance/hook-analyzer.js +135 -0
  136. package/lib/enhance/hook-patterns.js +40 -0
  137. package/lib/enhance/index.js +127 -0
  138. package/lib/enhance/plugin-analyzer.js +402 -0
  139. package/lib/enhance/plugin-patterns.js +326 -0
  140. package/lib/enhance/projectmemory-analyzer.js +551 -0
  141. package/lib/enhance/projectmemory-patterns.js +617 -0
  142. package/lib/enhance/prompt-analyzer.js +457 -0
  143. package/lib/enhance/prompt-patterns.js +1484 -0
  144. package/lib/enhance/reporter.js +1348 -0
  145. package/lib/enhance/security-patterns.js +284 -0
  146. package/lib/enhance/skill-analyzer.js +182 -0
  147. package/lib/enhance/skill-patterns.js +147 -0
  148. package/lib/enhance/suppression.js +352 -0
  149. package/lib/enhance/tool-patterns.js +373 -0
  150. package/lib/index.js +270 -0
  151. package/lib/package.json +25 -0
  152. package/lib/patterns/cli-enhancers.js +611 -0
  153. package/lib/patterns/pipeline.js +948 -0
  154. package/lib/patterns/review-patterns.js +558 -0
  155. package/lib/patterns/slop-analyzers.js +2305 -0
  156. package/lib/patterns/slop-patterns.js +1187 -0
  157. package/lib/perf/analyzer/index.js +22 -0
  158. package/lib/perf/argument-parser.js +105 -0
  159. package/lib/perf/baseline-comparator.js +50 -0
  160. package/lib/perf/baseline-store.js +127 -0
  161. package/lib/perf/benchmark-runner.js +399 -0
  162. package/lib/perf/breaking-point-finder.js +52 -0
  163. package/lib/perf/breaking-point-runner.js +60 -0
  164. package/lib/perf/checkpoint.js +123 -0
  165. package/lib/perf/code-paths.js +86 -0
  166. package/lib/perf/consolidation.js +37 -0
  167. package/lib/perf/constraint-runner.js +71 -0
  168. package/lib/perf/experiment-runner.js +32 -0
  169. package/lib/perf/index.js +41 -0
  170. package/lib/perf/investigation-state.js +875 -0
  171. package/lib/perf/optimization-runner.js +79 -0
  172. package/lib/perf/profilers/go.js +22 -0
  173. package/lib/perf/profilers/index.js +46 -0
  174. package/lib/perf/profilers/java.js +23 -0
  175. package/lib/perf/profilers/node.js +27 -0
  176. package/lib/perf/profilers/python.js +23 -0
  177. package/lib/perf/profilers/rust.js +23 -0
  178. package/lib/perf/profiling-runner.js +56 -0
  179. package/lib/perf/schemas.js +140 -0
  180. package/lib/platform/detect-platform.js +413 -0
  181. package/lib/platform/detection-configs.js +93 -0
  182. package/lib/platform/state-dir.js +132 -0
  183. package/lib/platform/verify-tools.js +182 -0
  184. package/lib/repo-map/cache.js +152 -0
  185. package/lib/repo-map/index.js +222 -0
  186. package/lib/repo-map/installer.js +212 -0
  187. package/lib/repo-map/queries/go.js +27 -0
  188. package/lib/repo-map/queries/index.js +100 -0
  189. package/lib/repo-map/queries/java.js +38 -0
  190. package/lib/repo-map/queries/javascript.js +55 -0
  191. package/lib/repo-map/queries/python.js +24 -0
  192. package/lib/repo-map/queries/rust.js +73 -0
  193. package/lib/repo-map/queries/typescript.js +38 -0
  194. package/lib/repo-map/runner.js +1165 -0
  195. package/lib/repo-map/updater.js +474 -0
  196. package/lib/repo-map/usage-analyzer.js +407 -0
  197. package/lib/schemas/plugin-manifest.schema.json +57 -0
  198. package/lib/schemas/validator.js +247 -0
  199. package/lib/sources/custom-handler.js +199 -0
  200. package/lib/sources/policy-questions.js +246 -0
  201. package/lib/sources/source-cache.js +165 -0
  202. package/lib/state/workflow-state.js +575 -0
  203. package/lib/types/agent-frontmatter.d.ts +134 -0
  204. package/lib/types/command-frontmatter.d.ts +107 -0
  205. package/lib/types/hook-frontmatter.d.ts +115 -0
  206. package/lib/types/index.d.ts +84 -0
  207. package/lib/types/plugin-manifest.d.ts +102 -0
  208. package/lib/types/skill-frontmatter.d.ts +89 -0
  209. package/lib/utils/atomic-write.js +94 -0
  210. package/lib/utils/cache-manager.js +159 -0
  211. package/lib/utils/context-optimizer.js +300 -0
  212. package/lib/utils/deprecation.js +37 -0
  213. package/lib/utils/shell-escape.js +88 -0
  214. package/meta/skills/maintain-cross-platform/SKILL.md +1022 -0
  215. package/package.json +92 -0
  216. package/plugins/agnix/.claude-plugin/plugin.json +22 -0
  217. package/plugins/agnix/agents/agnix-agent.md +56 -0
  218. package/plugins/agnix/commands/agnix.md +139 -0
  219. package/plugins/agnix/skills/agnix/SKILL.md +138 -0
  220. package/plugins/audit-project/.claude-plugin/plugin.json +20 -0
  221. package/plugins/audit-project/commands/audit-project-agents.md +458 -0
  222. package/plugins/audit-project/commands/audit-project-github.md +144 -0
  223. package/plugins/audit-project/commands/audit-project.md +336 -0
  224. package/plugins/audit-project/lib/adapter-transforms.js +278 -0
  225. package/plugins/audit-project/lib/collectors/codebase.js +392 -0
  226. package/plugins/audit-project/lib/collectors/docs-patterns.js +713 -0
  227. package/plugins/audit-project/lib/collectors/documentation.js +219 -0
  228. package/plugins/audit-project/lib/collectors/github.js +266 -0
  229. package/plugins/audit-project/lib/collectors/index.js +126 -0
  230. package/plugins/audit-project/lib/config/index.js +14 -0
  231. package/plugins/audit-project/lib/cross-platform/index.js +539 -0
  232. package/plugins/audit-project/lib/discovery/index.js +352 -0
  233. package/plugins/audit-project/lib/drift-detect/collectors.js +37 -0
  234. package/plugins/audit-project/lib/enhance/agent-analyzer.js +421 -0
  235. package/plugins/audit-project/lib/enhance/agent-patterns.js +571 -0
  236. package/plugins/audit-project/lib/enhance/auto-suppression.js +622 -0
  237. package/plugins/audit-project/lib/enhance/benchmark.js +417 -0
  238. package/plugins/audit-project/lib/enhance/cross-file-analyzer.js +930 -0
  239. package/plugins/audit-project/lib/enhance/cross-file-patterns.js +370 -0
  240. package/plugins/audit-project/lib/enhance/docs-analyzer.js +325 -0
  241. package/plugins/audit-project/lib/enhance/docs-patterns.js +671 -0
  242. package/plugins/audit-project/lib/enhance/fixer.js +721 -0
  243. package/plugins/audit-project/lib/enhance/hook-analyzer.js +135 -0
  244. package/plugins/audit-project/lib/enhance/hook-patterns.js +40 -0
  245. package/plugins/audit-project/lib/enhance/index.js +127 -0
  246. package/plugins/audit-project/lib/enhance/plugin-analyzer.js +402 -0
  247. package/plugins/audit-project/lib/enhance/plugin-patterns.js +326 -0
  248. package/plugins/audit-project/lib/enhance/projectmemory-analyzer.js +551 -0
  249. package/plugins/audit-project/lib/enhance/projectmemory-patterns.js +617 -0
  250. package/plugins/audit-project/lib/enhance/prompt-analyzer.js +457 -0
  251. package/plugins/audit-project/lib/enhance/prompt-patterns.js +1484 -0
  252. package/plugins/audit-project/lib/enhance/reporter.js +1348 -0
  253. package/plugins/audit-project/lib/enhance/security-patterns.js +284 -0
  254. package/plugins/audit-project/lib/enhance/skill-analyzer.js +182 -0
  255. package/plugins/audit-project/lib/enhance/skill-patterns.js +147 -0
  256. package/plugins/audit-project/lib/enhance/suppression.js +352 -0
  257. package/plugins/audit-project/lib/enhance/tool-patterns.js +373 -0
  258. package/plugins/audit-project/lib/index.js +270 -0
  259. package/plugins/audit-project/lib/patterns/cli-enhancers.js +611 -0
  260. package/plugins/audit-project/lib/patterns/pipeline.js +948 -0
  261. package/plugins/audit-project/lib/patterns/review-patterns.js +558 -0
  262. package/plugins/audit-project/lib/patterns/slop-analyzers.js +2305 -0
  263. package/plugins/audit-project/lib/patterns/slop-patterns.js +1187 -0
  264. package/plugins/audit-project/lib/perf/analyzer/index.js +22 -0
  265. package/plugins/audit-project/lib/perf/argument-parser.js +105 -0
  266. package/plugins/audit-project/lib/perf/baseline-comparator.js +50 -0
  267. package/plugins/audit-project/lib/perf/baseline-store.js +127 -0
  268. package/plugins/audit-project/lib/perf/benchmark-runner.js +399 -0
  269. package/plugins/audit-project/lib/perf/breaking-point-finder.js +52 -0
  270. package/plugins/audit-project/lib/perf/breaking-point-runner.js +60 -0
  271. package/plugins/audit-project/lib/perf/checkpoint.js +123 -0
  272. package/plugins/audit-project/lib/perf/code-paths.js +86 -0
  273. package/plugins/audit-project/lib/perf/consolidation.js +37 -0
  274. package/plugins/audit-project/lib/perf/constraint-runner.js +71 -0
  275. package/plugins/audit-project/lib/perf/experiment-runner.js +32 -0
  276. package/plugins/audit-project/lib/perf/index.js +41 -0
  277. package/plugins/audit-project/lib/perf/investigation-state.js +875 -0
  278. package/plugins/audit-project/lib/perf/optimization-runner.js +79 -0
  279. package/plugins/audit-project/lib/perf/profilers/go.js +22 -0
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  283. package/plugins/audit-project/lib/perf/profilers/python.js +23 -0
  284. package/plugins/audit-project/lib/perf/profilers/rust.js +23 -0
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  286. package/plugins/audit-project/lib/perf/schemas.js +140 -0
  287. package/plugins/audit-project/lib/platform/detect-platform.js +413 -0
  288. package/plugins/audit-project/lib/platform/detection-configs.js +93 -0
  289. package/plugins/audit-project/lib/platform/state-dir.js +132 -0
  290. package/plugins/audit-project/lib/platform/verify-tools.js +182 -0
  291. package/plugins/audit-project/lib/repo-map/cache.js +152 -0
  292. package/plugins/audit-project/lib/repo-map/index.js +222 -0
  293. package/plugins/audit-project/lib/repo-map/installer.js +212 -0
  294. package/plugins/audit-project/lib/repo-map/queries/go.js +27 -0
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  299. package/plugins/audit-project/lib/repo-map/queries/rust.js +73 -0
  300. package/plugins/audit-project/lib/repo-map/queries/typescript.js +38 -0
  301. package/plugins/audit-project/lib/repo-map/runner.js +1165 -0
  302. package/plugins/audit-project/lib/repo-map/updater.js +474 -0
  303. package/plugins/audit-project/lib/repo-map/usage-analyzer.js +407 -0
  304. package/plugins/audit-project/lib/schemas/plugin-manifest.schema.json +57 -0
  305. package/plugins/audit-project/lib/schemas/validator.js +247 -0
  306. package/plugins/audit-project/lib/sources/custom-handler.js +199 -0
  307. package/plugins/audit-project/lib/sources/policy-questions.js +246 -0
  308. package/plugins/audit-project/lib/sources/source-cache.js +165 -0
  309. package/plugins/audit-project/lib/state/workflow-state.js +575 -0
  310. package/plugins/audit-project/lib/types/agent-frontmatter.d.ts +134 -0
  311. package/plugins/audit-project/lib/types/command-frontmatter.d.ts +107 -0
  312. package/plugins/audit-project/lib/types/hook-frontmatter.d.ts +115 -0
  313. package/plugins/audit-project/lib/types/index.d.ts +84 -0
  314. package/plugins/audit-project/lib/types/plugin-manifest.d.ts +102 -0
  315. package/plugins/audit-project/lib/types/skill-frontmatter.d.ts +89 -0
  316. package/plugins/audit-project/lib/utils/atomic-write.js +94 -0
  317. package/plugins/audit-project/lib/utils/cache-manager.js +159 -0
  318. package/plugins/audit-project/lib/utils/context-optimizer.js +300 -0
  319. package/plugins/audit-project/lib/utils/deprecation.js +37 -0
  320. package/plugins/audit-project/lib/utils/shell-escape.js +88 -0
  321. package/plugins/consult/.claude-plugin/plugin.json +24 -0
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@@ -0,0 +1,670 @@
1
+ # Learning Guide: Advanced AI CLI Integration - MCP Servers, SDKs, and Cross-Tool Patterns
2
+
3
+ **Generated**: 2026-02-10
4
+ **Sources**: 38 resources analyzed
5
+ **Depth**: deep
6
+ **Prerequisite**: [ai-cli-non-interactive-programmatic-usage.md](./ai-cli-non-interactive-programmatic-usage.md)
7
+
8
+ ## TL;DR
9
+
10
+ - **Claude Code** is the most integration-ready: runs AS an MCP server (`claude mcp serve`), has a full Agent SDK (Python/TypeScript), supports custom subagents, MCP client with 100+ servers, session forking, and containerized hosting.
11
+ - **Gemini CLI** supports MCP as a client (stdio/http/sse), has an extension system for packaging MCP servers + commands + hooks, supports remote agents via A2A protocol, and has a tools API for custom tool registration. No server mode or SDK.
12
+ - **Codex CLI** has MCP support via `shell-tool-mcp` (acts as MCP client, not server), a Rust rewrite (`codex-rs`) underway, and a TypeScript SDK at `sdk/typescript/`. No server mode.
13
+ - **OpenCode** is archived (Sept 2025), succeeded by **Crush** (charmbracelet/crush). Crush supports MCP (stdio/http/sse), agent skills, LSP integration, and multi-provider support. No server mode or SDK.
14
+
15
+ **Bottom line**: For cross-tool consultation, Claude Code is the best "callee" because `claude mcp serve` lets other tools connect to it natively via MCP protocol, not just CLI subprocess calls.
16
+
17
+ ---
18
+
19
+ ## Table of Contents
20
+
21
+ 1. [MCP Server Capabilities](#mcp-server-capabilities)
22
+ 2. [MCP Client Capabilities](#mcp-client-capabilities)
23
+ 3. [SDK / Programmatic Library Access](#sdk--programmatic-library-access)
24
+ 4. [Extension / Plugin Systems](#extension--plugin-systems)
25
+ 5. [Remote Agents & A2A Protocol](#remote-agents--a2a-protocol)
26
+ 6. [Server / Daemon / Long-Running Patterns](#server--daemon--long-running-patterns)
27
+ 7. [Cross-Tool Integration Matrix](#cross-tool-integration-matrix)
28
+ 8. [Best Integration Patterns by Use Case](#best-integration-patterns-by-use-case)
29
+ 9. [Detailed Tool Deep-Dives](#detailed-tool-deep-dives)
30
+
31
+ ---
32
+
33
+ ## MCP Server Capabilities
34
+
35
+ Can the tool **run AS an MCP server** that other tools connect to?
36
+
37
+ | Tool | Runs as MCP Server? | Command | What It Exposes |
38
+ |------|---------------------|---------|-----------------|
39
+ | **Claude Code** | Yes | `claude mcp serve` | Read, Edit, Write, Bash, Glob, Grep tools |
40
+ | **Gemini CLI** | No | N/A | N/A |
41
+ | **Codex CLI** | No (has `shell-tool-mcp` server) | `npx @openai/codex-shell-tool-mcp` | Sandboxed shell execution only |
42
+ | **OpenCode/Crush** | No | N/A | N/A |
43
+
44
+ ### Claude Code as MCP Server (Key Feature)
45
+
46
+ Claude Code can expose its full tool suite to any MCP client:
47
+
48
+ ```bash
49
+ # Start Claude Code as an MCP server (stdio transport)
50
+ claude mcp serve
51
+ ```
52
+
53
+ **Use in Claude Desktop:**
54
+
55
+ ```json
56
+ {
57
+ "mcpServers": {
58
+ "claude-code": {
59
+ "type": "stdio",
60
+ "command": "claude",
61
+ "args": ["mcp", "serve"],
62
+ "env": {}
63
+ }
64
+ }
65
+ }
66
+ ```
67
+
68
+ **Use from any MCP client (including other AI CLIs):**
69
+
70
+ Any tool that supports MCP can connect to Claude Code's tools. This means Gemini CLI, through its extension system, could theoretically connect to a Claude Code MCP server and use Claude's Read/Edit/Bash tools.
71
+
72
+ **What gets exposed:**
73
+ - File operations: Read, Write, Edit, Glob, Grep
74
+ - Shell execution: Bash
75
+ - Search: WebSearch, WebFetch
76
+
77
+ **Important caveat**: The MCP server only exposes Claude Code's *tools* -- the calling client is responsible for its own AI model and tool approval flow. This is different from calling Claude Code's AI via `-p`.
78
+
79
+ ### Codex shell-tool-mcp
80
+
81
+ Codex provides `@openai/codex-shell-tool-mcp` -- a specialized MCP server for sandboxed shell execution:
82
+
83
+ ```toml
84
+ # ~/.codex/config.toml
85
+ [features]
86
+ shell_tool = false
87
+
88
+ [mcp_servers.shell-tool]
89
+ command = "npx"
90
+ args = ["-y", "@openai/codex-shell-tool-mcp"]
91
+ ```
92
+
93
+ **What it does:**
94
+ - Intercepts `execve()` system calls at kernel level
95
+ - Enforces `.rules` file policies (allow/prompt/forbidden)
96
+ - Provides sandboxed shell within Codex's security model
97
+ - Codex acts as MCP **client**, not server
98
+
99
+ ---
100
+
101
+ ## MCP Client Capabilities
102
+
103
+ Can the tool **connect TO external MCP servers**?
104
+
105
+ | Tool | MCP Client? | Transport Types | Config Method |
106
+ |------|-------------|-----------------|---------------|
107
+ | **Claude Code** | Yes (deep) | stdio, http, sse | `claude mcp add`, `.mcp.json`, `--mcp-config` |
108
+ | **Gemini CLI** | Yes (via extensions) | stdio, http, sse | `settings.json`, extensions |
109
+ | **Codex CLI** | Yes (limited) | stdio | `config.toml` |
110
+ | **Crush** (OpenCode successor) | Yes | stdio, http, sse | Config file |
111
+
112
+ ### Claude Code MCP Client
113
+
114
+ The most comprehensive MCP client:
115
+
116
+ ```bash
117
+ # Add an HTTP MCP server
118
+ claude mcp add --transport http notion https://mcp.notion.com/mcp
119
+
120
+ # Add a stdio MCP server
121
+ claude mcp add --transport stdio db -- npx -y @bytebase/dbhub --dsn "postgres://..."
122
+
123
+ # Add with authentication
124
+ claude mcp add --transport http sentry https://mcp.sentry.dev/mcp
125
+ # Then: /mcp to authenticate via OAuth
126
+
127
+ # Load from config file (useful for programmatic invocation)
128
+ claude -p "query" --mcp-config ./mcp.json
129
+
130
+ # Strict mode: ONLY use specified MCP servers
131
+ claude -p "query" --strict-mcp-config --mcp-config ./mcp.json
132
+
133
+ # In Agent SDK (Python)
134
+ async for message in query(
135
+ prompt="Open example.com",
136
+ options=ClaudeAgentOptions(
137
+ mcp_servers={
138
+ "playwright": {"command": "npx", "args": ["@playwright/mcp@latest"]}
139
+ }
140
+ )
141
+ ):
142
+ ...
143
+ ```
144
+
145
+ **Key features:**
146
+ - OAuth 2.0 authentication for remote servers
147
+ - Scopes: local (default), project (`.mcp.json`, git-checked), user (global)
148
+ - Tool Search: auto-loads tools on-demand when many MCP servers configured
149
+ - MCP resources via `@server:protocol://path` references
150
+ - MCP prompts as `/mcp__server__prompt` commands
151
+ - Dynamic `list_changed` notifications
152
+ - Managed MCP for enterprise (allowlists/denylists)
153
+
154
+ ### Gemini CLI MCP Client
155
+
156
+ Via the extension system and `settings.json`:
157
+
158
+ ```json
159
+ // ~/.gemini/settings.json
160
+ {
161
+ "mcpServers": {
162
+ "github": {
163
+ "command": "npx",
164
+ "args": ["-y", "@modelcontextprotocol/server-github"],
165
+ "env": {
166
+ "GITHUB_TOKEN": "${GITHUB_TOKEN}"
167
+ }
168
+ }
169
+ }
170
+ }
171
+ ```
172
+
173
+ **Via extensions (bundled MCP servers):**
174
+
175
+ ```json
176
+ // gemini-extension.json
177
+ {
178
+ "name": "my-extension",
179
+ "mcpServers": {
180
+ "db": {
181
+ "command": "${extensionPath}/servers/db-server",
182
+ "args": ["--config", "${extensionPath}/config.json"]
183
+ }
184
+ }
185
+ }
186
+ ```
187
+
188
+ **Key features:**
189
+ - MCP servers loaded at startup
190
+ - Multiple servers prefix tool names: `serverAlias__toolName`
191
+ - Extension-bundled MCP servers auto-start
192
+ - Variable substitution: `${extensionPath}`, `${workspacePath}`
193
+
194
+ ### Crush (OpenCode Successor) MCP Client
195
+
196
+ ```yaml
197
+ # Configuration supports all three transports
198
+ mcpServers:
199
+ filesystem:
200
+ type: stdio
201
+ command: "npx"
202
+ args: ["-y", "@modelcontextprotocol/server-filesystem"]
203
+ env:
204
+ ALLOWED_DIRS: "/home/user/projects"
205
+ remote-api:
206
+ type: http
207
+ url: "https://api.example.com/mcp"
208
+ timeout: 30
209
+ ```
210
+
211
+ ---
212
+
213
+ ## SDK / Programmatic Library Access
214
+
215
+ Can you use the tool as an **importable library** (not just CLI subprocess)?
216
+
217
+ | Tool | Has SDK? | Languages | Package |
218
+ |------|----------|-----------|---------|
219
+ | **Claude Code** | Yes (Agent SDK) | Python, TypeScript | `claude-agent-sdk`, `@anthropic-ai/claude-agent-sdk` |
220
+ | **Gemini CLI** | No SDK | N/A | N/A (has Tools API for extensions) |
221
+ | **Codex CLI** | Partial (TypeScript SDK) | TypeScript | `sdk/typescript/` in repo |
222
+ | **Crush** | No SDK | N/A | N/A |
223
+
224
+ ### Claude Agent SDK (Most Mature)
225
+
226
+ The Agent SDK provides the same tools, agent loop, and context management as Claude Code CLI:
227
+
228
+ **Python:**
229
+ ```python
230
+ pip install claude-agent-sdk
231
+
232
+ from claude_agent_sdk import query, ClaudeAgentOptions
233
+
234
+ async for message in query(
235
+ prompt="Find and fix bugs in auth.py",
236
+ options=ClaudeAgentOptions(
237
+ allowed_tools=["Read", "Edit", "Bash"],
238
+ permission_mode="acceptEdits",
239
+ # Session management
240
+ resume="session-id",
241
+ fork_session=True,
242
+ # Structured output
243
+ output_format={"type": "json_schema", "schema": {...}},
244
+ # Custom subagents
245
+ agents={
246
+ "reviewer": AgentDefinition(
247
+ description="Code reviewer",
248
+ prompt="Review code quality",
249
+ tools=["Read", "Grep", "Glob"]
250
+ )
251
+ },
252
+ # MCP servers
253
+ mcp_servers={
254
+ "db": {"command": "npx", "args": ["-y", "@bytebase/dbhub"]}
255
+ },
256
+ # Hooks
257
+ hooks={
258
+ "PostToolUse": [HookMatcher(matcher="Edit|Write", hooks=[log_change])]
259
+ }
260
+ )
261
+ ):
262
+ if hasattr(message, "result"):
263
+ print(message.result)
264
+ ```
265
+
266
+ **TypeScript:**
267
+ ```typescript
268
+ npm install @anthropic-ai/claude-agent-sdk
269
+
270
+ import { query } from "@anthropic-ai/claude-agent-sdk";
271
+
272
+ for await (const message of query({
273
+ prompt: "Find and fix bugs in auth.py",
274
+ options: {
275
+ allowedTools: ["Read", "Edit", "Bash"],
276
+ permissionMode: "acceptEdits",
277
+ resume: sessionId,
278
+ forkSession: true,
279
+ outputFormat: { type: "json_schema", schema: mySchema },
280
+ agents: { reviewer: { description: "...", prompt: "...", tools: [...] } },
281
+ mcpServers: { db: { command: "npx", args: [...] } }
282
+ }
283
+ })) {
284
+ if ("result" in message) console.log(message.result);
285
+ }
286
+ ```
287
+
288
+ **Key SDK capabilities beyond CLI:**
289
+ - Async iterator streaming
290
+ - Programmatic hooks (callbacks, not shell scripts)
291
+ - Type-safe structured outputs (Zod/Pydantic)
292
+ - Native message objects with metadata
293
+ - Session management (resume, fork)
294
+ - Custom subagent definitions
295
+ - Tool approval callbacks (`canUseTool`)
296
+
297
+ ### Gemini CLI Tools API (Extension-Level)
298
+
299
+ Not an importable SDK, but Gemini CLI's core exposes a Tools API for custom tool registration:
300
+
301
+ ```typescript
302
+ // BaseTool interface (within Gemini CLI extensions)
303
+ interface BaseTool {
304
+ name: string;
305
+ displayName: string;
306
+ description: string;
307
+ parameterSchema: JSONSchema;
308
+ execute(params: any, signal: AbortSignal): Promise<ToolResult>;
309
+ validateToolParams(params: any): boolean;
310
+ shouldConfirmExecute(params: any): boolean;
311
+ }
312
+
313
+ // ToolResult
314
+ interface ToolResult {
315
+ llmContent: string | PartListUnion; // For model
316
+ returnDisplay: string | FileDiff; // For user
317
+ }
318
+ ```
319
+
320
+ **Dynamic tool discovery** via `tools.discoveryCommand` in `settings.json`:
321
+ ```json
322
+ {
323
+ "tools": {
324
+ "discoveryCommand": "./my-tool-discovery.sh"
325
+ }
326
+ }
327
+ ```
328
+
329
+ The command outputs JSON describing custom tools, registered as `DiscoveredTool` instances.
330
+
331
+ ---
332
+
333
+ ## Extension / Plugin Systems
334
+
335
+ | Tool | Extension System | What Can Be Packaged |
336
+ |------|-----------------|---------------------|
337
+ | **Claude Code** | Plugins (`plugin.json`) | Commands, agents, skills, MCP servers, hooks |
338
+ | **Gemini CLI** | Extensions (`gemini-extension.json`) | Commands, MCP servers, hooks, skills, sub-agents, context |
339
+ | **Codex CLI** | None (uses AGENTS.md + .rules) | N/A |
340
+ | **Crush** | Agent Skills (open standard) | Skills from configurable directories |
341
+
342
+ ### Gemini CLI Extensions (Rich System)
343
+
344
+ ```bash
345
+ # Install from GitHub
346
+ gemini extensions install https://github.com/owner/my-extension
347
+
348
+ # Scaffold new extension from template
349
+ gemini extensions new ./my-ext mcp-server
350
+
351
+ # Link for local development
352
+ gemini extensions link ./my-ext
353
+
354
+ # Manage
355
+ gemini extensions list
356
+ gemini extensions enable/disable <name>
357
+ gemini extensions update --all
358
+ ```
359
+
360
+ **Extension structure:**
361
+ ```
362
+ my-extension/
363
+ gemini-extension.json # Config (MCP servers, settings, tool exclusions)
364
+ GEMINI.md # Context file (auto-loaded)
365
+ commands/ # Custom slash commands (TOML files)
366
+ skills/ # Agent skills
367
+ agents/ # Sub-agents (.md files)
368
+ hooks/hooks.json # Lifecycle hooks
369
+ ```
370
+
371
+ **Templates available:** `context`, `custom-commands`, `exclude-tools`, `mcp-server`
372
+
373
+ ---
374
+
375
+ ## Remote Agents & A2A Protocol
376
+
377
+ | Tool | Remote Agent Support | Protocol |
378
+ |------|---------------------|----------|
379
+ | **Claude Code** | Yes (via Agent SDK hosting) | Custom (Agent SDK) |
380
+ | **Gemini CLI** | Yes | Agent-to-Agent (A2A) protocol |
381
+ | **Codex CLI** | No | N/A |
382
+ | **Crush** | No | N/A |
383
+
384
+ ### Gemini CLI A2A (Agent-to-Agent)
385
+
386
+ Gemini CLI can connect to remote subagents using the A2A protocol:
387
+
388
+ ```json
389
+ // settings.json
390
+ {
391
+ "remoteAgents": [
392
+ {
393
+ "name": "research-agent",
394
+ "agent_card_url": "https://my-agent.example.com/.well-known/agent.json"
395
+ }
396
+ ]
397
+ }
398
+ ```
399
+
400
+ **Commands:**
401
+ - `/agents` -- list, refresh, enable, disable remote agents
402
+ - Remote agents appear alongside local sub-agents
403
+
404
+ ### Claude Code Agent SDK Hosting
405
+
406
+ Deploy Claude Code agents as long-running services:
407
+
408
+ **Deployment patterns:**
409
+ 1. **Ephemeral**: New container per task, destroyed when complete
410
+ 2. **Long-running**: Persistent container, multiple Claude processes
411
+ 3. **Hybrid**: Ephemeral containers hydrated with history (session resume)
412
+ 4. **Single container**: Multiple SDK processes in one container
413
+
414
+ **Sandbox providers:**
415
+ - Modal Sandbox
416
+ - Cloudflare Sandboxes
417
+ - Daytona
418
+ - E2B
419
+ - Fly Machines
420
+ - Vercel Sandbox
421
+
422
+ **Resource requirements:** 1GiB RAM, 5GiB disk, 1 CPU per instance
423
+
424
+ ---
425
+
426
+ ## Server / Daemon / Long-Running Patterns
427
+
428
+ | Tool | Long-Running Mode | How |
429
+ |------|-------------------|-----|
430
+ | **Claude Code** | MCP Server + Agent SDK hosting | `claude mcp serve` / SDK containers |
431
+ | **Gemini CLI** | No | N/A |
432
+ | **Codex CLI** | No | N/A |
433
+ | **Crush** | No | N/A |
434
+
435
+ Claude Code is the only tool that supports true long-running server patterns:
436
+
437
+ 1. **MCP Server** (`claude mcp serve`): Exposes tools via MCP protocol
438
+ 2. **Agent SDK Containers**: Deploy as Docker/cloud services with session persistence
439
+ 3. **GitHub Actions**: `claude-code-action@v1` for CI/CD-triggered agents
440
+
441
+ ---
442
+
443
+ ## Cross-Tool Integration Matrix
444
+
445
+ | Feature | Claude Code | Gemini CLI | Codex CLI | Crush |
446
+ |---------|------------|------------|-----------|-------|
447
+ | **Runs as MCP server** | `claude mcp serve` | No | `shell-tool-mcp` (shell only) | No |
448
+ | **MCP client** | Deep (stdio/http/sse + OAuth) | Yes (via extensions) | Limited (stdio) | Yes (stdio/http/sse) |
449
+ | **Importable SDK** | Python + TypeScript | No | TypeScript (partial) | No |
450
+ | **Extension system** | Plugins | Extensions (rich) | AGENTS.md | Agent Skills |
451
+ | **Remote agents** | Agent SDK hosting | A2A protocol | No | No |
452
+ | **Subagents** | `--agents` JSON, file-based | `.md` files in agents/ | No | No |
453
+ | **Hooks** | Pre/Post ToolUse, Stop, etc. | hooks.json | No | No |
454
+ | **LSP integration** | No | No | No | Yes |
455
+ | **Multi-provider** | Anthropic, Bedrock, Vertex, Azure | Google, Vertex | OpenAI, Azure, Gemini, Ollama, etc. | All major |
456
+ | **Custom tools** | Built-in + MCP | Built-in + discovery + MCP | Built-in | Built-in + MCP |
457
+ | **Session fork** | `--fork-session` | No | No | No |
458
+ | **Cost control** | `--max-budget-usd` | No | No | No |
459
+
460
+ ---
461
+
462
+ ## Best Integration Patterns by Use Case
463
+
464
+ ### 1. "I want tool X to consult tool Y for a second opinion"
465
+
466
+ **Best approach**: Use CLI subprocess calls with `-p` flag and `--output-format json`.
467
+
468
+ ```bash
469
+ # From any AI session's shell, call Claude Code
470
+ result=$(claude -p "Review this code" --output-format json --max-turns 5 | jq -r '.result')
471
+
472
+ # From any AI session's shell, call Gemini
473
+ result=$(gemini -p "Review this code" --output-format json | jq -r '.response')
474
+
475
+ # From any AI session's shell, call Codex
476
+ result=$(codex -q --json "Review this code")
477
+ ```
478
+
479
+ ### 2. "I want tool X to use tool Y's tools (not just AI advice)"
480
+
481
+ **Best approach**: Use MCP. Connect tool X as MCP client to tool Y as MCP server.
482
+
483
+ ```bash
484
+ # Start Claude Code as MCP server
485
+ claude mcp serve
486
+
487
+ # Connect Gemini CLI to Claude Code's tools via extension
488
+ # In gemini-extension.json or settings.json:
489
+ {
490
+ "mcpServers": {
491
+ "claude-code": {
492
+ "command": "claude",
493
+ "args": ["mcp", "serve"]
494
+ }
495
+ }
496
+ }
497
+ ```
498
+
499
+ Now Gemini CLI can use Claude Code's Read, Edit, Bash tools through MCP.
500
+
501
+ ### 3. "I want to build an automated pipeline calling multiple AI tools"
502
+
503
+ **Best approach**: Use Claude Agent SDK as orchestrator, call other tools via Bash.
504
+
505
+ ```python
506
+ from claude_agent_sdk import query, ClaudeAgentOptions
507
+
508
+ # Claude as orchestrator with Bash access to call other tools
509
+ async for message in query(
510
+ prompt="""
511
+ 1. Analyze the codebase architecture
512
+ 2. Then run: gemini -p "Review architecture for scaling issues" --output-format json
513
+ 3. Compare your analysis with Gemini's
514
+ 4. Write a combined report
515
+ """,
516
+ options=ClaudeAgentOptions(
517
+ allowed_tools=["Read", "Glob", "Grep", "Bash", "Write"],
518
+ permission_mode="acceptEdits"
519
+ )
520
+ ):
521
+ if hasattr(message, "result"):
522
+ print(message.result)
523
+ ```
524
+
525
+ ### 4. "I want to expose my AI tool as a service for other tools"
526
+
527
+ **Best approach**: Only Claude Code supports this natively.
528
+
529
+ ```bash
530
+ # Claude Code as MCP server
531
+ claude mcp serve
532
+
533
+ # For Gemini/Codex: wrap in a custom MCP server
534
+ # Create a thin MCP wrapper around the CLI
535
+ ```
536
+
537
+ ### 5. "I want conversation continuity across multiple tools"
538
+
539
+ **Best approach**: Use Claude Code sessions + file-based context sharing.
540
+
541
+ ```bash
542
+ # Step 1: Claude analyzes, saves to file
543
+ claude -p "Analyze architecture" --output-format json > /tmp/analysis.json
544
+ SESSION=$(cat /tmp/analysis.json | jq -r '.session_id')
545
+
546
+ # Step 2: Gemini reads Claude's output, adds its perspective
547
+ cat /tmp/analysis.json | jq -r '.result' | \
548
+ gemini -p "Review this analysis. What's missing?" --output-format json > /tmp/gemini-review.json
549
+
550
+ # Step 3: Claude continues with Gemini's feedback
551
+ GEMINI_FEEDBACK=$(cat /tmp/gemini-review.json | jq -r '.response')
552
+ claude -p "A reviewer noted: $GEMINI_FEEDBACK. Update your analysis." \
553
+ --resume "$SESSION" --output-format json
554
+ ```
555
+
556
+ ### 6. "I want Gemini to use custom tools from an extension that calls Claude"
557
+
558
+ **Best approach**: Create a Gemini extension that wraps Claude Code.
559
+
560
+ ```json
561
+ // gemini-extension.json
562
+ {
563
+ "name": "claude-consultant",
564
+ "version": "1.0.0",
565
+ "description": "Consult Claude Code for second opinions",
566
+ "mcpServers": {
567
+ "claude-code": {
568
+ "command": "claude",
569
+ "args": ["mcp", "serve"]
570
+ }
571
+ }
572
+ }
573
+ ```
574
+
575
+ Install:
576
+ ```bash
577
+ gemini extensions install ./claude-consultant
578
+ ```
579
+
580
+ Now Gemini sessions can access Claude Code's tools natively.
581
+
582
+ ---
583
+
584
+ ## Detailed Tool Deep-Dives
585
+
586
+ ### Claude Code: Overlooked Capabilities
587
+
588
+ 1. **`claude mcp serve`** -- Run as MCP server for other tools
589
+ 2. **`--agents` JSON flag** -- Define specialized subagents inline
590
+ 3. **`--fork-session`** -- Branch conversations without losing original
591
+ 4. **`--json-schema`** -- Validated structured output with type safety
592
+ 5. **`--permission-prompt-tool`** -- Delegate permission prompts to an MCP tool
593
+ 6. **`--input-format stream-json`** -- Accept streaming JSON input
594
+ 7. **`--from-pr`** -- Resume sessions linked to GitHub PRs
595
+ 8. **`--remote`** -- Create web sessions on claude.ai from terminal
596
+ 9. **`--teleport`** -- Resume web sessions in local terminal
597
+ 10. **Plugin system** -- Bundle agents, skills, MCP servers, hooks
598
+ 11. **Managed MCP** -- Enterprise allowlist/denylist for MCP servers
599
+ 12. **MCP Tool Search** -- Auto on-demand loading when many tools configured
600
+ 13. **Agent teams** -- Multiple agents collaborating via SendMessage
601
+
602
+ ### Gemini CLI: Overlooked Capabilities
603
+
604
+ 1. **Extensions system** -- Full packaging of MCP + commands + hooks + skills
605
+ 2. **A2A protocol** -- Connect to remote agents
606
+ 3. **Sub-agents** -- Define in `.md` files within agents/ directory
607
+ 4. **Agent Skills** -- Auto-discovered from skills/ directory
608
+ 5. **Tools API** -- `tools.discoveryCommand` for dynamic tool registration
609
+ 6. **Hooks system** -- Lifecycle hooks in `hooks/hooks.json`
610
+ 7. **`--output-format stream-json`** -- Real-time event streaming
611
+ 8. **Custom commands** -- TOML-based commands in extensions
612
+ 9. **Context files** -- GEMINI.md auto-loaded from extensions
613
+ 10. **Extension management** -- Install from GitHub, scaffold, link for dev
614
+
615
+ ### Codex CLI: Overlooked Capabilities
616
+
617
+ 1. **`shell-tool-mcp`** -- MCP server for sandboxed shell execution
618
+ 2. **Codex-rs (Rust rewrite)** -- Performance-focused reimplementation
619
+ 3. **TypeScript SDK** (`sdk/typescript/`) -- Programmatic access
620
+ 4. **`.rules` files** -- Declarative security policies (allow/prompt/forbidden)
621
+ 5. **`full-auto` sandboxing** -- Network-disabled, directory-confined execution
622
+ 6. **`fullAutoErrorMode`** -- `ignore-and-continue` for automation resilience
623
+ 7. **Multi-provider** -- OpenAI, Azure, Gemini, Ollama via `--provider`
624
+ 8. **AGENTS.md** -- Project configuration (shared with Claude Code)
625
+
626
+ ### Crush (OpenCode Successor): Overlooked Capabilities
627
+
628
+ 1. **MCP support** -- Full stdio/http/sse transport support
629
+ 2. **Agent Skills** -- Open standard, auto-discovered from directories
630
+ 3. **LSP integration** -- Language Server Protocol for code intelligence
631
+ 4. **Multi-model** -- Switch models mid-session, preserving context
632
+ 5. **Cross-platform** -- macOS, Linux, Windows, Android, FreeBSD, OpenBSD, NetBSD
633
+ 6. **AGENTS.md support** -- Compatible with Claude Code/Codex project configs
634
+
635
+ ---
636
+
637
+ ## Common Pitfalls for Advanced Integration
638
+
639
+ | Pitfall | Why It Happens | How to Avoid |
640
+ |---------|---------------|--------------|
641
+ | MCP server tools but no AI | `claude mcp serve` exposes tools, not the AI model | Use `-p` for AI advice, `mcp serve` for tool access |
642
+ | Extension MCP servers not loading | Gemini extensions need restart | Restart Gemini CLI after adding extensions |
643
+ | Codex MCP limited to shell | `shell-tool-mcp` only provides shell, not full Codex | Use `-q` for full Codex capabilities |
644
+ | A2A agents not discoverable | Gemini needs `agent_card_url` endpoint | Ensure agent card is at `/.well-known/agent.json` |
645
+ | Cross-tool context loss | Each tool has isolated context | Use files or session IDs to bridge context |
646
+ | MCP Tool Search confusion | Tools load on-demand, may seem missing | Set `ENABLE_TOOL_SEARCH=false` to debug |
647
+ | Extension variable expansion | `${VAR}` vs `$VAR` syntax differences | Use `${VAR}` in `.mcp.json`, `$(echo $VAR)` in Crush |
648
+
649
+ ---
650
+
651
+ ## Further Reading
652
+
653
+ | Resource | Type | Why Recommended |
654
+ |----------|------|-----------------|
655
+ | [Claude Code MCP Guide](https://code.claude.com/docs/en/mcp) | Official Docs | Complete MCP client + server reference |
656
+ | [Claude Agent SDK Overview](https://platform.claude.com/docs/en/agent-sdk/overview) | Official Docs | Python/TypeScript SDK with full capabilities |
657
+ | [Agent SDK Hosting](https://platform.claude.com/docs/en/agent-sdk/hosting) | Official Docs | Production deployment patterns |
658
+ | [Agent SDK Sessions](https://platform.claude.com/docs/en/agent-sdk/sessions) | Official Docs | Session management and forking |
659
+ | [Claude Code Sub-agents](https://code.claude.com/docs/en/sub-agents) | Official Docs | Custom agents, --agents flag, delegation |
660
+ | [Gemini CLI Extensions Reference](https://github.com/google-gemini/gemini-cli/blob/main/docs/extensions/reference.md) | Official Docs | Extension config, MCP bundling, variables |
661
+ | [Gemini CLI Remote Agents](https://github.com/google-gemini/gemini-cli/blob/main/docs/core/remote-agents.md) | Official Docs | A2A protocol, remote agent configuration |
662
+ | [Gemini CLI Tools API](https://github.com/google-gemini/gemini-cli/blob/main/docs/core/tools-api.md) | Official Docs | Custom tool registration, discovery |
663
+ | [Codex shell-tool-mcp](https://github.com/openai/codex/tree/main/shell-tool-mcp) | Official Docs | Sandboxed MCP shell execution |
664
+ | [Crush (OpenCode successor)](https://github.com/charmbracelet/crush) | Repository | MCP, agent skills, LSP integration |
665
+ | [MCP Specification](https://modelcontextprotocol.io/introduction) | Standard | Protocol spec for building MCP servers/clients |
666
+
667
+ ---
668
+
669
+ *Generated by /learn from 38 sources (deep research).*
670
+ *See `resources/ai-cli-advanced-integration-patterns-sources.json` for full source metadata.*