agent-bober 0.17.1 → 0.19.0

package/dist/medical/health-store.js

@@ -0,0 +1,214 @@
+/**
+ * HealthDataStore — SQLite-backed health observation store (Phase 6, Sprint 4).
+ *
+ * Mirrors FactStore (src/state/facts.ts) exactly:
+ *   - better-sqlite3 SYNC (no await anywhere)
+ *   - Single generic `health_observations` events table + `lab_results` + `kv_store`
+ *   - CREATE TABLE IF NOT EXISTS in constructor
+ *   - INSERT OR IGNORE on deterministic SHA-256 id
+ *   - upsertObservations returns NEW-row count only (sum of info.changes)
+ *
+ * PURE: Never calls Date.now() or new Date() — every timestamp is an injected parameter.
+ * ADR-4: Generic single-table pattern, deterministic id = SHA-256(metric|tStart|source|value).
+ *
+ * bober: in-memory or file-backed via better-sqlite3 (synchronous); swap for node:sqlite
+ *        when engines.node is raised to >=22.5.
+ */
+import { createHash } from "node:crypto";
+import Database from "better-sqlite3";
+// ── Deterministic id helper ───────────────────────────────────────────
+/**
+ * Derive a deterministic 16-char hex id for a health observation.
+ * Mirrors factId at src/state/facts.ts:58-69.
+ * Signature: metric|tStart|source|value (ADR-4 contract line 73).
+ * Identical inputs always produce the same id — no wall-clock dependency.
+ */
+export function observationId(metric, tStart, source, value) {
+    return createHash("sha256")
+        .update(`${metric}|${tStart}|${source}|${value}`)
+        .digest("hex")
+        .slice(0, 16);
+}
+/**
+ * Derive a deterministic 16-char hex id for a lab result.
+ * Signature: biomarker|collectedAtIso|value.
+ */
+export function labResultId(biomarker, collectedAtIso, value) {
+    return createHash("sha256")
+        .update(`${biomarker}|${collectedAtIso}|${value}`)
+        .digest("hex")
+        .slice(0, 16);
+}
+// ── Row mappers (snake_case → camelCase) ──────────────────────────────
+function rowToObservation(row) {
+    return {
+        id: row.id,
+        metric: row.metric,
+        value: row.value,
+        unit: row.unit,
+        tStart: row.t_start,
+        tEnd: row.t_end ?? undefined,
+        source: row.source,
+    };
+}
+function rowToLabResult(row) {
+    return {
+        id: row.id,
+        biomarker: row.biomarker,
+        value: row.value,
+        unit: row.unit,
+        collectedAtIso: row.collected_at,
+        referenceLow: row.ref_low ?? undefined,
+        referenceHigh: row.ref_high ?? undefined,
+    };
+}
+// ── HealthDataStore ───────────────────────────────────────────────────
+/**
+ * SQLite-backed health observation store.
+ *
+ * Tables:
+ *   health_observations — generic single-table for metric time series (ADR-4)
+ *   lab_results         — laboratory biomarker results with reference ranges
+ *   kv_store            — key/value backing for getBaseline/putBaseline + getPreference
+ *
+ * All methods are SYNCHRONOUS (better-sqlite3 API). No await anywhere.
+ */
+export class HealthDataStore {
+    db;
+    constructor(dbPath) {
+        this.db = new Database(dbPath);
+        this.db.exec(`
+      CREATE TABLE IF NOT EXISTS health_observations (
+        id TEXT PRIMARY KEY,
+        metric TEXT NOT NULL,
+        value REAL NOT NULL,
+        unit TEXT NOT NULL,
+        t_start TEXT NOT NULL,
+        t_end TEXT,
+        source TEXT NOT NULL
+      );
+      CREATE INDEX IF NOT EXISTS idx_obs_metric ON health_observations(metric, t_start);
+
+      CREATE TABLE IF NOT EXISTS lab_results (
+        id TEXT PRIMARY KEY,
+        biomarker TEXT NOT NULL,
+        value REAL NOT NULL,
+        unit TEXT NOT NULL,
+        collected_at TEXT NOT NULL,
+        ref_low REAL,
+        ref_high REAL
+      );
+      CREATE INDEX IF NOT EXISTS idx_lab_biomarker ON lab_results(biomarker, collected_at);
+
+      CREATE TABLE IF NOT EXISTS kv_store (
+        k TEXT PRIMARY KEY,
+        v TEXT NOT NULL
+      );
+    `);
+    }
+    /**
+     * Insert observations, ignoring duplicates (INSERT OR IGNORE on the deterministic id).
+     * Returns the count of NEW rows only (0 for duplicates, 1 per genuinely new row).
+     * ADR-4: id = SHA-256(metric|tStart|source|value).slice(0,16).
+     */
+    upsertObservations(rows) {
+        const stmt = this.db.prepare(`INSERT OR IGNORE INTO health_observations
+         (id, metric, value, unit, t_start, t_end, source)
+       VALUES (?, ?, ?, ?, ?, ?, ?)`);
+        // better-sqlite3 .transaction returns the fn's return value synchronously.
+        const insertAll = this.db.transaction((obs) => {
+            let inserted = 0;
+            for (const o of obs) {
+                const id = o.id ?? observationId(o.metric, o.tStart, o.source, o.value);
+                const info = stmt.run(id, o.metric, o.value, o.unit, o.tStart, o.tEnd ?? null, o.source);
+                // INSERT OR IGNORE => info.changes is 0 for a dup, 1 for a new row.
+                inserted += info.changes;
+            }
+            return inserted;
+        });
+        return insertAll(rows);
+    }
+    /**
+     * Return observations for a metric within [fromIso, toIso], ordered by t_start ASC.
+     * ISO-8601 strings sort lexicographically == chronologically.
+     */
+    getObservations(metric, fromIso, toIso) {
+        const rows = this.db
+            .prepare(`SELECT id, metric, value, unit, t_start, t_end, source
+           FROM health_observations
+          WHERE metric = ? AND t_start >= ? AND t_start <= ?
+          ORDER BY t_start ASC`)
+            .all(metric, fromIso, toIso);
+        return rows.map(rowToObservation);
+    }
+    /**
+     * Return all lab results for a biomarker, ordered by collected_at ASC.
+     */
+    getLabSeries(biomarker) {
+        const rows = this.db
+            .prepare(`SELECT id, biomarker, value, unit, collected_at, ref_low, ref_high
+           FROM lab_results
+          WHERE biomarker = ?
+          ORDER BY collected_at ASC`)
+            .all(biomarker);
+        return rows.map(rowToLabResult);
+    }
+    /**
+     * Insert a lab result, ignoring duplicates.
+     * Returns the count of NEW rows inserted (0 or 1).
+     */
+    upsertLabResult(result) {
+        const id = result.id ?? labResultId(result.biomarker, result.collectedAtIso, result.value);
+        const info = this.db
+            .prepare(`INSERT OR IGNORE INTO lab_results
+           (id, biomarker, value, unit, collected_at, ref_low, ref_high)
+         VALUES (?, ?, ?, ?, ?, ?, ?)`)
+            .run(id, result.biomarker, result.value, result.unit, result.collectedAtIso, result.referenceLow ?? null, result.referenceHigh ?? null);
+        return info.changes;
+    }
+    /**
+     * Read a stored baseline for a metric from the kv_store.
+     * Returns undefined if no baseline has been stored.
+     */
+    getBaseline(metric) {
+        const row = this.db
+            .prepare(`SELECT v FROM kv_store WHERE k = ?`)
+            .get(`baseline:${metric}`);
+        if (!row)
+            return undefined;
+        return JSON.parse(row.v);
+    }
+    /**
+     * Persist a baseline value to the kv_store (INSERT OR REPLACE).
+     */
+    putBaseline(b) {
+        this.db
+            .prepare(`INSERT OR REPLACE INTO kv_store (k, v) VALUES (?, ?)`)
+            .run(`baseline:${b.metric}`, JSON.stringify(b));
+    }
+    /**
+     * Read a preference string from the kv_store.
+     * Returns undefined if the key is not set.
+     */
+    getPreference(key) {
+        const row = this.db
+            .prepare(`SELECT v FROM kv_store WHERE k = ?`)
+            .get(`pref:${key}`);
+        return row?.v;
+    }
+    /**
+     * Return all distinct biomarker names present in the lab_results table, ordered alphabetically.
+     * Returns an empty array when no lab results have been loaded.
+     */
+    listBiomarkers() {
+        const rows = this.db
+            .prepare(`SELECT DISTINCT biomarker FROM lab_results ORDER BY biomarker ASC`)
+            .all();
+        return rows.map((r) => r.biomarker);
+    }
+    /** Close the underlying database connection. */
+    close() {
+        this.db.close();
+    }
+}
+//# sourceMappingURL=health-store.js.map

package/dist/medical/health-store.js.map

@@ -0,0 +1 @@
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package/dist/medical/inference.d.ts

@@ -0,0 +1,22 @@
+/** Medical inference resolver — local-default fail-closed; cloud only behind cloud-inference (Sprint 3). */
+import type { BoberConfig } from "../config/schema.js";
+import type { LLMClient } from "../providers/types.js";
+import type { EgressGuard } from "./egress.js";
+import { createClient } from "../providers/factory.js";
+/** Injectable factory seam so tests can spy without real network. Defaults to the real createClient. */
+export type ClientFactory = typeof createClient;
+/**
+ * Resolve the synthesis/critic LLMClient + model from config, gated by cloud-inference.
+ *
+ * - No inference config => exact local default (back-compat, byte-identical to engine.ts:402).
+ * - inference points at the local provider/endpoint => used as-is (non-egressing).
+ * - inference points at a CLOUD provider/endpoint AND cloud-inference is OFF => FAIL CLOSED to local.
+ * - cloud config AND cloud-inference is ON => the configured cloud client/model is built.
+ *
+ * The local-vs-cloud decision lives ONLY here; createClient is the sole client-construction seam.
+ */
+export declare function buildMedicalInferenceClient(config: BoberConfig, egress: EgressGuard, factory?: ClientFactory): {
+    client: LLMClient;
+    model: string;
+};
+//# sourceMappingURL=inference.d.ts.map

package/dist/medical/inference.d.ts.map

@@ -0,0 +1 @@
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package/dist/medical/inference.js

@@ -0,0 +1,39 @@
+import { createClient } from "../providers/factory.js";
+// ── Local default (non-egressing) ────────────────────────────────────
+/** The local Ollama default — provider openai-compat, localhost endpoint, llama3. Treated as non-egressing. */
+const LOCAL = {
+    provider: "openai-compat",
+    endpoint: "http://localhost:11434/v1",
+    model: "llama3",
+};
+// ── buildMedicalInferenceClient ──────────────────────────────────────
+/**
+ * Resolve the synthesis/critic LLMClient + model from config, gated by cloud-inference.
+ *
+ * - No inference config => exact local default (back-compat, byte-identical to engine.ts:402).
+ * - inference points at the local provider/endpoint => used as-is (non-egressing).
+ * - inference points at a CLOUD provider/endpoint AND cloud-inference is OFF => FAIL CLOSED to local.
+ * - cloud config AND cloud-inference is ON => the configured cloud client/model is built.
+ *
+ * The local-vs-cloud decision lives ONLY here; createClient is the sole client-construction seam.
+ */
+export function buildMedicalInferenceClient(config, egress, factory = createClient) {
+    const inf = config.medical?.inference;
+    const wantProvider = inf?.provider ?? LOCAL.provider;
+    const wantEndpoint = inf?.endpoint ?? LOCAL.endpoint;
+    // "Local" = openai-compat against a localhost endpoint. Anything else is treated as cloud.
+    const isLocal = wantProvider === LOCAL.provider && wantEndpoint.includes("localhost");
+    // FAIL CLOSED: cloud config requested but the cloud-inference axis is not opted in.
+    if (!isLocal && !egress.isAllowed("cloud-inference")) {
+        return {
+            client: factory(LOCAL.provider, LOCAL.endpoint, undefined, LOCAL.model),
+            model: LOCAL.model,
+        };
+    }
+    // Either local, or cloud-with-opt-in: honour the (possibly overridden) config.
+    const provider = inf?.provider ?? LOCAL.provider;
+    const endpoint = inf?.endpoint ?? LOCAL.endpoint;
+    const model = inf?.model ?? LOCAL.model;
+    return { client: factory(provider, endpoint, undefined, model), model };
+}
+//# sourceMappingURL=inference.js.map

package/dist/medical/inference.js.map

@@ -0,0 +1 @@
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package/dist/medical/ingestion.d.ts

@@ -0,0 +1,33 @@
+/** IngestionNormalizer + StoreObservationSink — streaming health import (Phase 6, Sprint 5). */
+import type { HealthDataStore } from "./health-store.js";
+import type { HealthObservation, IngestionAdapter, IngestionResult, LabResult, ObservationSink } from "./types.js";
+/**
+ * ObservationSink implementation that batches writes into HealthDataStore.
+ * Accumulates newRows across all writeBatch calls for the final IngestionResult.
+ * writeBatch is async so the adapter can await it and apply backpressure.
+ */
+export declare class StoreObservationSink implements ObservationSink {
+    private readonly store;
+    /** Accumulates the total count of NEW rows inserted across all batches. */
+    newRows: number;
+    constructor(store: HealthDataStore);
+    writeBatch(obs: HealthObservation[], labs: LabResult[]): Promise<void>;
+}
+/**
+ * Registry of IngestionAdapters.
+ * register() adds adapters; importFile() dispatches to the first matching one.
+ * Throws a clear Error naming the file if no adapter canHandle it (sc-5-7).
+ */
+export declare class IngestionNormalizer {
+    private readonly adapters;
+    private readonly sink;
+    constructor(sink: ObservationSink);
+    /** Add an adapter to the registry. */
+    register(adapter: IngestionAdapter): void;
+    /**
+     * Import a file using the first matching adapter.
+     * Throws if no adapter canHandle the file (message contains the file path).
+     */
+    importFile(filePath: string): Promise<IngestionResult>;
+}
+//# sourceMappingURL=ingestion.d.ts.map

package/dist/medical/ingestion.d.ts.map

@@ -0,0 +1 @@
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package/dist/medical/ingestion.js

@@ -0,0 +1,52 @@
+/**
+ * ObservationSink implementation that batches writes into HealthDataStore.
+ * Accumulates newRows across all writeBatch calls for the final IngestionResult.
+ * writeBatch is async so the adapter can await it and apply backpressure.
+ */
+export class StoreObservationSink {
+    store;
+    /** Accumulates the total count of NEW rows inserted across all batches. */
+    newRows = 0;
+    constructor(store) {
+        this.store = store;
+    }
+    async writeBatch(obs, labs) {
+        // upsertObservations is synchronous (better-sqlite3); returns NEW-row count.
+        if (obs.length > 0) {
+            this.newRows += this.store.upsertObservations(obs);
+        }
+        for (const lab of labs) {
+            this.newRows += this.store.upsertLabResult(lab);
+        }
+        // async signature lets the adapter await this call and pause/resume around it.
+    }
+}
+/**
+ * Registry of IngestionAdapters.
+ * register() adds adapters; importFile() dispatches to the first matching one.
+ * Throws a clear Error naming the file if no adapter canHandle it (sc-5-7).
+ */
+export class IngestionNormalizer {
+    adapters = [];
+    // bober: linear scan; swap for Map<ext, adapter> when adapter count grows large
+    sink;
+    constructor(sink) {
+        this.sink = sink;
+    }
+    /** Add an adapter to the registry. */
+    register(adapter) {
+        this.adapters.push(adapter);
+    }
+    /**
+     * Import a file using the first matching adapter.
+     * Throws if no adapter canHandle the file (message contains the file path).
+     */
+    async importFile(filePath) {
+        const adapter = this.adapters.find((a) => a.canHandle(filePath));
+        if (!adapter) {
+            throw new Error(`No ingestion adapter can handle '${filePath}'`);
+        }
+        return adapter.ingest(filePath, this.sink);
+    }
+}
+//# sourceMappingURL=ingestion.js.map

package/dist/medical/ingestion.js.map

@@ -0,0 +1 @@
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package/dist/medical/lab-note.d.ts

@@ -0,0 +1,72 @@
+/**
+ * Lab-note vault writer — serializes parsed lab markers to YAML-frontmatter markdown notes.
+ *
+ * Status classification is deterministic JS: value vs reference range (ADR-3 spirit).
+ *
+ * PURE file I/O + deterministic helpers only.
+ * NO network. NO LLM. NO Date.now(). All timestamps are injected parameters.
+ *
+ * bober: hand-rolled YAML-frontmatter subset (flat scalars only, no arrays/nested objects).
+ *        Mirror of src/vault/frontmatter.ts approach — never import that module.
+ *        Swap for a vetted YAML library if quoted strings or nested objects are required.
+ */
+import type { ParsedLabMarker } from "./lab-types.js";
+/** Deterministic lab status — derived in pure JS, never by an LLM (ADR-3 spirit). */
+export type LabStatus = "low" | "normal" | "high" | "critical";
+/** Report-level metadata supplied alongside a ParsedLabMarker at write time. */
+export interface LabNoteMeta {
+    panel: string;
+    /** ISO 8601 collection timestamp — INJECTED, never Date.now(). */
+    collectedAtIso: string;
+    source: string;
+}
+/**
+ * Structured contents of a lab note's YAML frontmatter.
+ * All 10 keys are always present; ref_low / ref_high are undefined when absent.
+ */
+export interface LabNoteFrontmatter {
+    marker: string;
+    value: number;
+    unit: string;
+    ref_low: number | undefined;
+    ref_high: number | undefined;
+    /** Human-readable range string, e.g. "70-100", or "" when bounds are absent. */
+    ref_range: string;
+    /** ISO 8601 collection date (stored verbatim from collectedAtIso). */
+    date: string;
+    status: LabStatus;
+    panel: string;
+    source: string;
+}
+/**
+ * Produce a URL-safe slug from an arbitrary string.
+ * Precedent: src/incident/timeline.ts:117.
+ */
+export declare function slugify(s: string): string;
+/**
+ * Derive a deterministic lab status from value vs reference range.
+ * Pure sync — no LLM, no network, no Date.now() (ADR-3 spirit).
+ *
+ * Priority: critical flag wins; else compare to bounds; missing bounds → "normal".
+ */
+export declare function deriveLabStatus(value: number, refLow?: number, refHigh?: number, critical?: boolean): LabStatus;
+/**
+ * Parse the YAML frontmatter from a raw lab-note markdown string.
+ * Numeric fields (value, ref_low, ref_high) are coerced from their string representation.
+ * ref_low / ref_high are undefined when the value is absent or empty.
+ *
+ * Throws if the opening or closing `---` fence is missing.
+ *
+ * Mirror of src/vault/frontmatter.ts:53-135 — DO NOT import that module.
+ */
+export declare function parseLabNote(raw: string): LabNoteFrontmatter;
+/**
+ * Write one parsed lab marker to a YAML-frontmatter markdown note.
+ *
+ * Note path: `<vaultDir>/labs/<panel-slug>/<marker-slug>-<date>.md`
+ * The date segment is the YYYY-MM-DD portion of collectedAtIso (colons stripped).
+ *
+ * Parent directories are created automatically. Returns the absolute path written.
+ */
+export declare function writeLabNote(vaultDir: string, marker: ParsedLabMarker, meta: LabNoteMeta): Promise<string>;
+//# sourceMappingURL=lab-note.d.ts.map

package/dist/medical/lab-note.d.ts.map

@@ -0,0 +1 @@
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package/dist/medical/lab-note.js

@@ -0,0 +1,161 @@
+/**
+ * Lab-note vault writer — serializes parsed lab markers to YAML-frontmatter markdown notes.
+ *
+ * Status classification is deterministic JS: value vs reference range (ADR-3 spirit).
+ *
+ * PURE file I/O + deterministic helpers only.
+ * NO network. NO LLM. NO Date.now(). All timestamps are injected parameters.
+ *
+ * bober: hand-rolled YAML-frontmatter subset (flat scalars only, no arrays/nested objects).
+ *        Mirror of src/vault/frontmatter.ts approach — never import that module.
+ *        Swap for a vetted YAML library if quoted strings or nested objects are required.
+ */
+import { writeFile } from "node:fs/promises";
+import { join, dirname } from "node:path";
+import { ensureDir } from "../utils/fs.js";
+// -- Pure helpers --------------------------------------------------------
+/**
+ * Produce a URL-safe slug from an arbitrary string.
+ * Precedent: src/incident/timeline.ts:117.
+ */
+export function slugify(s) {
+    return s
+        .toLowerCase()
+        .replace(/[^a-z0-9]+/g, "-")
+        .replace(/^-+|-+$/g, "");
+}
+/**
+ * Derive a deterministic lab status from value vs reference range.
+ * Pure sync — no LLM, no network, no Date.now() (ADR-3 spirit).
+ *
+ * Priority: critical flag wins; else compare to bounds; missing bounds → "normal".
+ */
+export function deriveLabStatus(value, refLow, refHigh, critical) {
+    if (critical === true)
+        return "critical";
+    if (refLow !== undefined && value < refLow)
+        return "low";
+    if (refHigh !== undefined && value > refHigh)
+        return "high";
+    return "normal";
+}
+// -- Hand-rolled YAML frontmatter ----------------------------------------
+/** Matches an integer or float (with optional leading minus). */
+const NUM_REGEX = /^-?\d+(\.\d+)?$/;
+/**
+ * Serialize a LabNoteFrontmatter to a YAML-frontmatter markdown string.
+ * Produces `---\n<key: value lines>\n---\n`.
+ * Flat scalar keys only; undefined numeric values are serialized as empty strings.
+ *
+ * Mirror of src/vault/frontmatter.ts:145-164 — DO NOT import that module.
+ */
+function serializeLabFrontmatter(fm) {
+    const lines = ["---"];
+    lines.push(`marker: ${fm.marker}`);
+    lines.push(`value: ${String(fm.value)}`);
+    lines.push(`unit: ${fm.unit}`);
+    lines.push(`ref_low: ${fm.ref_low !== undefined ? String(fm.ref_low) : ""}`);
+    lines.push(`ref_high: ${fm.ref_high !== undefined ? String(fm.ref_high) : ""}`);
+    lines.push(`ref_range: ${fm.ref_range}`);
+    lines.push(`date: ${fm.date}`);
+    lines.push(`status: ${fm.status}`);
+    lines.push(`panel: ${fm.panel}`);
+    lines.push(`source: ${fm.source}`);
+    lines.push("---");
+    return lines.join("\n") + "\n";
+}
+/**
+ * Parse the YAML frontmatter from a raw lab-note markdown string.
+ * Numeric fields (value, ref_low, ref_high) are coerced from their string representation.
+ * ref_low / ref_high are undefined when the value is absent or empty.
+ *
+ * Throws if the opening or closing `---` fence is missing.
+ *
+ * Mirror of src/vault/frontmatter.ts:53-135 — DO NOT import that module.
+ */
+export function parseLabNote(raw) {
+    const lines = raw.split("\n");
+    if (lines[0]?.trim() !== "---") {
+        throw new Error("parseLabNote: missing opening '---' fence");
+    }
+    let closingIdx = -1;
+    for (let i = 1; i < lines.length; i++) {
+        if (lines[i].trim() === "---") {
+            closingIdx = i;
+            break;
+        }
+    }
+    if (closingIdx === -1) {
+        throw new Error("parseLabNote: missing closing '---' fence");
+    }
+    const yamlLines = lines.slice(1, closingIdx);
+    const record = {};
+    for (const line of yamlLines) {
+        const colonIdx = line.indexOf(":");
+        if (colonIdx < 0)
+            continue;
+        const key = line.slice(0, colonIdx).trim();
+        if (key === "")
+            continue;
+        const rawVal = line.slice(colonIdx + 1).trim();
+        record[key] = NUM_REGEX.test(rawVal) ? Number(rawVal) : rawVal;
+    }
+    // -- Coerce and extract fields --
+    const marker = String(record["marker"] ?? "");
+    const valueRaw = record["value"];
+    const value = typeof valueRaw === "number" ? valueRaw : Number(valueRaw ?? 0);
+    const unit = String(record["unit"] ?? "");
+    const refLowRaw = record["ref_low"];
+    const ref_low = typeof refLowRaw === "number"
+        ? refLowRaw
+        : refLowRaw === "" || refLowRaw === undefined
+            ? undefined
+            : Number(refLowRaw);
+    const refHighRaw = record["ref_high"];
+    const ref_high = typeof refHighRaw === "number"
+        ? refHighRaw
+        : refHighRaw === "" || refHighRaw === undefined
+            ? undefined
+            : Number(refHighRaw);
+    const ref_range = String(record["ref_range"] ?? "");
+    const date = String(record["date"] ?? "");
+    const status = String(record["status"] ?? "normal");
+    const panel = String(record["panel"] ?? "");
+    const source = String(record["source"] ?? "");
+    return { marker, value, unit, ref_low, ref_high, ref_range, date, status, panel, source };
+}
+// -- Note writer ---------------------------------------------------------
+/**
+ * Write one parsed lab marker to a YAML-frontmatter markdown note.
+ *
+ * Note path: `<vaultDir>/labs/<panel-slug>/<marker-slug>-<date>.md`
+ * The date segment is the YYYY-MM-DD portion of collectedAtIso (colons stripped).
+ *
+ * Parent directories are created automatically. Returns the absolute path written.
+ */
+export async function writeLabNote(vaultDir, marker, meta) {
+    const status = deriveLabStatus(marker.value, marker.referenceLow, marker.referenceHigh, marker.critical);
+    const refRange = marker.referenceLow !== undefined && marker.referenceHigh !== undefined
+        ? `${marker.referenceLow}-${marker.referenceHigh}`
+        : "";
+    const fm = {
+        marker: marker.name,
+        value: marker.value,
+        unit: marker.unit,
+        ref_low: marker.referenceLow,
+        ref_high: marker.referenceHigh,
+        ref_range: refRange,
+        date: meta.collectedAtIso,
+        status,
+        panel: meta.panel,
+        source: meta.source,
+    };
+    // Use only the YYYY-MM-DD portion so the filename contains no colons.
+    const datePortion = meta.collectedAtIso.split("T")[0] ?? meta.collectedAtIso;
+    const notePath = join(vaultDir, "labs", slugify(meta.panel), `${slugify(marker.name)}-${datePortion}.md`);
+    const serialized = serializeLabFrontmatter(fm);
+    await ensureDir(dirname(notePath));
+    await writeFile(notePath, serialized, "utf-8");
+    return notePath;
+}
+//# sourceMappingURL=lab-note.js.map

package/dist/medical/lab-note.js.map

@@ -0,0 +1 @@
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package/dist/medical/lab-pdf-parser.d.ts

@@ -0,0 +1,19 @@
+import type { LLMClient } from "../providers/types.js";
+import { type ParsedLabReport } from "./lab-types.js";
+export interface ParseLabPdfDeps {
+    /** Injectable LLMClient; tests inject a fake, production uses buildMedicalInferenceClient (Sprint 3). */
+    client: LLMClient;
+    /** Model identifier to pass to the client. */
+    model: string;
+}
+/**
+ * Base64-encodes `pdfBytes`, sends it as an Anthropic document content block
+ * via an injectable `LLMClient` with schema-constrained output, and returns a
+ * Zod-validated `ParsedLabReport`. Throws a `ZodError` on malformed model output
+ * — never returns an unvalidated object.
+ *
+ * @param pdfBytes  Raw bytes of a native-text PDF lab report.
+ * @param deps      Injectable `{ client, model }` seam for testing and egress gating.
+ */
+export declare function parseLabPdf(pdfBytes: Uint8Array, deps: ParseLabPdfDeps): Promise<ParsedLabReport>;
+//# sourceMappingURL=lab-pdf-parser.d.ts.map