agent-bober 0.17.1 → 0.19.0

package/dist/graph/client.js

@@ -7,18 +7,36 @@
  * Sandbox post-filter is a single chokepoint here — every NodeRef.file
  * is validated via sandboxNodePath before returning to callers.
  */
+import { assertNever } from "./types.js";
 import { sandboxNodePath } from "./sandbox.js";
 // Tokensave MCP tool catalog → GraphClient method mapping.
-// Names match the canonical tool catalog (per the project CLAUDE.md);
-// no `tokensave_` prefix.
+// All tools use the `tokensave_` prefix as emitted by tokensave 6.1.1's tools/list.
 const TOOL = {
-    search: "semantic_search_nodes",
-    query: "query_graph",
-    impact: "get_impact_radius",
-    reviewContext: "get_review_context",
-    overview: "get_architecture_overview",
-    changes: "detect_changes",
+    search: "tokensave_search",
+    impact: "tokensave_impact",
+    reviewContext: "tokensave_context",
+    overview: "tokensave_module_api",
+    changes: "tokensave_changelog",
 };
+// Per-pattern query tool map: each QueryPattern maps to a distinct tokensave 6.1.1 tool.
+const QUERY_TOOL = {
+    callers_of: "tokensave_callers",
+    callees_of: "tokensave_callees",
+    imports_of: "tokensave_file_dependents",
+    tests_for: "tokensave_test_map",
+};
+// ── Kind coercion ──────────────────────────────────────────────────
+/** Valid NodeRef.kind values — 6.1.1 emits wider kinds; coerce unknowns to "symbol". */
+const NODE_KINDS = new Set(["function", "class", "module", "symbol"]);
+function toNodeRef(row) {
+    return {
+        id: row.id ?? row.node_id ?? "",
+        kind: NODE_KINDS.has(row.kind ?? "") ? row.kind : "symbol",
+        file: row.file,
+        line: row.line,
+        symbol: row.name,
+    };
+}
 export class GraphClient {
     projectRoot;
     mcpClient;
@@ -51,35 +69,109 @@ export class GraphClient {
     }
     // ── Public API ──────────────────────────────────────────────────
     async search(q, opts) {
-        return this.runWithSandbox(TOOL.search, { query: q, ...opts }, (raw) => {
-            const hits = raw.filter((h) => this.keepNode(h.node, "search"));
-            return hits;
+        return this.runWithSandbox(TOOL.search, { query: q, ...(opts?.limit !== undefined ? { limit: opts.limit } : {}) }, (raw) => {
+            const rows = raw;
+            const hits = rows.map((row) => ({
+                node: toNodeRef(row),
+                score: row.score,
+                snippet: row.signature ?? "",
+            }));
+            // Post-filter by kind if requested (tokensave_search has no kind param).
+            const filtered = opts?.kind
+                ? hits.filter((h) => h.node.kind === opts.kind)
+                : hits;
+            return filtered.filter((h) => this.keepNode(h.node, "search"));
         });
     }
     async query(pattern, target) {
-        return this.runWithSandbox(TOOL.query, { pattern, target }, (raw) => {
-            return raw.filter((n) => this.keepNode(n, "query"));
-        });
+        switch (pattern) {
+            case "callers_of":
+            case "callees_of": {
+                const tool = QUERY_TOOL[pattern];
+                return this.runWithSandbox(tool, { node_id: target.id }, (raw) => {
+                    const rows = raw;
+                    return rows
+                        .map((row) => toNodeRef({ ...row, id: row.node_id }))
+                        .filter((n) => this.keepNode(n, "query"));
+                });
+            }
+            case "imports_of": {
+                return this.runWithSandbox(QUERY_TOOL.imports_of, { file: target.file }, (raw) => {
+                    const result = raw;
+                    return result.dependents
+                        .map((path) => ({
+                        id: path,
+                        kind: "module",
+                        file: path,
+                        line: 0,
+                        symbol: path,
+                    }))
+                        .filter((n) => this.keepNode(n, "query"));
+                });
+            }
+            case "tests_for": {
+                return this.runWithSandbox(QUERY_TOOL.tests_for, { file: target.file }, (raw) => {
+                    const result = raw;
+                    if (result.test_files.length > 0) {
+                        return result.test_files
+                            .map((path) => ({
+                            id: path,
+                            kind: "module",
+                            file: path,
+                            line: 0,
+                            symbol: path,
+                        }))
+                            .filter((n) => this.keepNode(n, "query"));
+                    }
+                    // Fall back to uncovered symbol rows if test_files is empty.
+                    return result.uncovered
+                        .map((row) => toNodeRef(row))
+                        .filter((n) => this.keepNode(n, "query"));
+                });
+            }
+            default:
+                return assertNever(pattern);
+        }
     }
     async impact(target) {
-        return this.runWithSandbox(TOOL.impact, { target }, (raw) => {
-            const report = raw;
+        const nodeId = typeof target === "string" ? target : target.id;
+        return this.runWithSandbox(TOOL.impact, { node_id: nodeId }, (raw) => {
+            const result = raw;
+            const allNodes = result.nodes.map((row) => toNodeRef(row));
+            const root = allNodes[0] ?? toNodeRef({
+                id: nodeId,
+                name: nodeId,
+                file: typeof target === "string" ? "" : target.file,
+                line: 0,
+                kind: "symbol",
+            });
+            const rest = allNodes.slice(1);
+            const testsAffected = rest.filter((n) => /test|spec/i.test(n.file));
+            const affected = rest.filter((n) => !/test|spec/i.test(n.file));
             return {
-                root: report.root, // root may be out-of-sandbox but is informational only
-                affected: report.affected.filter((n) => this.keepNode(n, "impact")),
-                testsAffected: report.testsAffected.filter((n) => this.keepNode(n, "impact")),
+                root, // root may be out-of-sandbox but is informational only
+                affected: affected.filter((n) => this.keepNode(n, "impact")),
+                testsAffected: testsAffected.filter((n) => this.keepNode(n, "impact")),
             };
         });
     }
     async reviewContext(nodes) {
-        return this.runRaw(TOOL.reviewContext, { nodes });
+        const task = nodes.map((n) => n.symbol).join(", ");
+        return this.runRaw(TOOL.reviewContext, { task });
     }
     async overview() {
-        return this.runRaw(TOOL.overview, {});
+        return this.runWithSandbox(TOOL.overview, { path: "src" }, (raw) => {
+            // tokensave_module_api returns a JSON object; stringify for string callers.
+            const result = raw;
+            return JSON.stringify(result);
+        });
     }
     async changes(since) {
-        return this.runWithSandbox(TOOL.changes, { since }, (raw) => {
-            return raw.filter((n) => this.keepNode(n, "changes"));
+        return this.runWithSandbox(TOOL.changes, { from_ref: since ?? "HEAD~1", to_ref: "HEAD" }, (raw) => {
+            const result = raw;
+            return result.symbols_in_changed_files
+                .map((row) => toNodeRef(row))
+                .filter((n) => this.keepNode(n, "changes"));
         });
     }
     async prefetch(queries) {

package/dist/graph/client.js.map

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package/dist/graph/mcp-client.d.ts

@@ -19,6 +19,7 @@ export declare class TokensaveMcpClient {
     private readonly binary;
     childPid: number | null;
     private child;
+    private handshakeId;
     private healthState;
     private nextId;
     private readonly pending;

package/dist/graph/mcp-client.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"mcp-client.d.ts","sourceRoot":"","sources":["../../src/graph/mcp-client.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAIH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAC/C,OAAO,KAAK,EAAE,WAAW,EAAE,MAAM,gBAAgB,CAAC;AAWlD,MAAM,MAAM,YAAY,GAAG,UAAU,GAAG,OAAO,GAAG,YAAY,GAAG,QAAQ,CAAC;AA6E1E,qBAAa,kBAAkB;IAc3B,OAAO,CAAC,QAAQ,CAAC,WAAW;IAC5B,OAAO,CAAC,QAAQ,CAAC,GAAG;IACpB,OAAO,CAAC,QAAQ,CAAC,SAAS;IAC1B,OAAO,CAAC,QAAQ,CAAC,MAAM;IAfzB,QAAQ,EAAE,MAAM,GAAG,IAAI,CAAQ;IAE/B,OAAO,CAAC,KAAK,CAA2B;IACxC,OAAO,CAAC,WAAW,CAAK;IACxB,OAAO,CAAC,WAAW,CAA4B;IAC/C,OAAO,CAAC,MAAM,CAAK;IACnB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAkC;IAC1D,OAAO,CAAC,iBAAiB,CAAgB;IACzC,OAAO,CAAC,SAAS,CAAM;IACvB,OAAO,CAAC,QAAQ,CAAS;gBAGN,WAAW,EAAE,MAAM,EACnB,GAAG,EAAE,YAAY,EACjB,SAAS,EAAE,WAAW,EACtB,MAAM,GAAE,MAAoB;IAG/C,MAAM,IAAI,YAAY;IAMtB;;;;;OAKG;IACG,KAAK,IAAI,OAAO,CAAC,IAAI,CAAC;IAQ5B;;OAEG;IACG,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IA2C3B;;;OAGG;IACG,IAAI,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC;YA6C1C,iBAAiB;IAwG/B,OAAO,CAAC,cAAc;YAkBR,MAAM;IAmEpB,OAAO,CAAC,gBAAgB;CAOzB"}

package/dist/graph/mcp-client.js

@@ -14,7 +14,7 @@ import { logger } from "../utils/logger.js";
 // ── Constants ──────────────────────────────────────────────────────
 const BREAKER_WINDOW_MS = 60_000;
 const BREAKER_MAX_RESTARTS = 3;
-const HANDSHAKE_TIMEOUT_MS = 1_000;
+const HANDSHAKE_TIMEOUT_MS = 5_000;
 // ── Structured errors ──────────────────────────────────────────────
 function makeGraphError(reason, detail) {
     const err = new Error(`${reason}: ${detail}`);
@@ -22,6 +22,39 @@ function makeGraphError(reason, detail) {
     err.detail = detail;
     return err;
 }
+// ── MCP content unwrap ─────────────────────────────────────────────
+/**
+ * Unwrap a tools/call MCP result into the actual payload.
+ *
+ * tokensave 6.1.1 returns result.content as a MULTI-ENTRY array where
+ * content[0] may be a plain-text staleness WARNING (not JSON) and the
+ * actual JSON payload is a later entry. We scan ALL text entries and
+ * return the first one that JSON.parses; if none parse, return the
+ * first text entry as a raw string.
+ *
+ * Also handles the MCP in-band isError shape per spec (sc-1-5).
+ * bober: naive linear scan over content[]; upgrade if content grows large.
+ */
+function unwrapMcpContent(result) {
+    const r = result;
+    const texts = (r?.content ?? [])
+        .filter((c) => c?.type === "text")
+        .map((c) => c.text ?? "");
+    const joined = texts.join("");
+    if (r?.isError === true) {
+        throw makeGraphError("GRAPH_ERROR", joined || "tool returned isError");
+    }
+    // Prefer the first text entry that parses as JSON; fall back to first text.
+    for (const t of texts) {
+        try {
+            return JSON.parse(t);
+        }
+        catch {
+            // not JSON — keep looking
+        }
+    }
+    return texts[0] ?? "";
+}
 // ── TokensaveMcpClient ─────────────────────────────────────────────
 export class TokensaveMcpClient {
     projectRoot;
@@ -31,6 +64,7 @@ export class TokensaveMcpClient {
     // Exposed so pipeline-lifecycle can read the child PID for the PID file
     childPid = null;
     child = null;
+    handshakeId = 0;
     healthState = "starting";
     nextId = 1;
     pending = new Map();
@@ -112,7 +146,7 @@ export class TokensaveMcpClient {
         }
         const id = this.nextId++;
         const timeoutMs = this.cfg.queryTimeoutMs ?? 5_000;
-        return new Promise((resolve, reject) => {
+        const rawResult = await new Promise((resolve, reject) => {
             const timer = setTimeout(() => {
                 this.pending.delete(id);
                 reject(makeGraphError("GRAPH_TIMEOUT", `call to ${tool} timed out after ${timeoutMs}ms`));
@@ -125,8 +159,8 @@ export class TokensaveMcpClient {
             const request = {
                 jsonrpc: "2.0",
                 id,
-                method: tool,
-                params,
+                method: "tools/call",
+                params: { name: tool, arguments: params },
             };
             try {
                 this.child.stdin.write(JSON.stringify(request) + "\n");
@@ -137,6 +171,7 @@ export class TokensaveMcpClient {
                 reject(makeGraphError("GRAPH_ERROR", `stdin write failed: ${err instanceof Error ? err.message : String(err)}`));
             }
         });
+        return unwrapMcpContent(rawResult);
     }
     // ── Private: spawn + handshake ─────────────────────────────────
     async spawnAndHandshake() {
@@ -150,6 +185,19 @@ export class TokensaveMcpClient {
             this.child = child;
             this.childPid = child.pid ?? null;
             this.stdoutBuf = "";
+            // Reserve an id for the initialize request from the same counter as
+            // call() so ids never collide.
+            this.handshakeId = this.nextId++;
+            child.stdin?.write(JSON.stringify({
+                jsonrpc: "2.0",
+                id: this.handshakeId,
+                method: "initialize",
+                params: {
+                    protocolVersion: "2024-11-05",
+                    capabilities: {},
+                    clientInfo: { name: "agent-bober", version: "0" },
+                },
+            }) + "\n");
             // Route stderr to debug log — never to user stdout
             child.stderr?.on("data", (chunk) => {
                 logger.debug(`[tokensave-serve stderr] ${String(chunk).trimEnd()}`);
@@ -191,13 +239,16 @@ export class TokensaveMcpClient {
                         logger.debug(`[tokensave-serve] non-JSON stdout: ${trimmed}`);
                         continue;
                     }
-                    // Handshake: accept any valid JSON-RPC 2.0 message that indicates
-                    // the server is ready (notification with no id, or any response)
-                    if (!settled) {
+                    // Handshake: resolve ONLY when the correlated initialize response
+                    // (same id as our initialize request) arrives — NOT on any first line.
+                    if (!settled && typeof msg.id === "number" && msg.id === this.handshakeId) {
                         clearTimeout(handshakeTimer);
                         settled = true;
                         this.healthState = "ready";
                         resolve();
+                        // Send the notifications/initialized notification AFTER resolving
+                        child.stdin?.write(JSON.stringify({ jsonrpc: "2.0", method: "notifications/initialized" }) + "\n");
+                        continue; // skip handleResponse for the handshake response
                     }
                     // Correlation: if it has an id, it's a response to a pending call
                     if (typeof msg.id === "number") {

package/dist/graph/mcp-client.js.map

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package/dist/hub/collector.d.ts

@@ -0,0 +1,12 @@
+import type { Finding } from "./finding.js";
+/**
+ * Open each sibling repo's derived FactStore READ-ONLY, read its findings,
+ * pool them into one Finding[] deduplicated by Finding.id (keep first,
+ * stable order). PURE: no LLM, no network. A missing/corrupt sibling is
+ * skipped, never fatal.
+ *
+ * @param repoPaths  Absolute repo-root paths (each has a derived facts.db).
+ * @param scope      FactStore scope to read from (defaults to HUB_SCOPE).
+ */
+export declare function collectFindings(repoPaths: string[], scope?: string): Finding[];
+//# sourceMappingURL=collector.d.ts.map

package/dist/hub/collector.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"collector.d.ts","sourceRoot":"","sources":["../../src/hub/collector.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,cAAc,CAAC;AAI5C;;;;;;;;GAQG;AACH,wBAAgB,eAAe,CAC7B,SAAS,EAAE,MAAM,EAAE,EACnB,KAAK,GAAE,MAAkB,GACxB,OAAO,EAAE,CAqBX"}

package/dist/hub/collector.js

@@ -0,0 +1,36 @@
+import { FactStore, factsDbPath } from "../state/facts.js";
+import { FactStoreFindingSource, HUB_SCOPE } from "./finding-source.js";
+// ── collectFindings ───────────────────────────────────────────────────
+/**
+ * Open each sibling repo's derived FactStore READ-ONLY, read its findings,
+ * pool them into one Finding[] deduplicated by Finding.id (keep first,
+ * stable order). PURE: no LLM, no network. A missing/corrupt sibling is
+ * skipped, never fatal.
+ *
+ * @param repoPaths  Absolute repo-root paths (each has a derived facts.db).
+ * @param scope      FactStore scope to read from (defaults to HUB_SCOPE).
+ */
+export function collectFindings(repoPaths, scope = HUB_SCOPE) {
+    const pooled = [];
+    const seen = new Set();
+    for (const repo of repoPaths) {
+        let store;
+        try {
+            store = new FactStore(factsDbPath(repo), { readonly: true });
+            for (const f of new FactStoreFindingSource(store, scope).read()) {
+                if (seen.has(f.id))
+                    continue; // dedup by Finding.id (keep first)
+                seen.add(f.id);
+                pooled.push(f);
+            }
+        }
+        catch {
+            // missing or corrupt sibling -> skip, never fatal
+        }
+        finally {
+            store?.close();
+        }
+    }
+    return pooled;
+}
+//# sourceMappingURL=collector.js.map

package/dist/hub/collector.js.map

@@ -0,0 +1 @@
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package/dist/hub/finding-source.d.ts

@@ -0,0 +1,22 @@
+import type { Finding } from "./finding.js";
+import type { FactStore } from "../state/facts.js";
+/** FactStore scope/namespace the hub stores its own findings under. */
+export declare const HUB_SCOPE = "hub";
+/** Interface for any source that can supply Finding objects. */
+export interface FindingSource {
+    read(): Finding[];
+}
+/**
+ * Reads predicate-'finding' rows from one FactStore scope,
+ * JSON-parses and validates each row value into a Finding.
+ *
+ * Contract: never throws. Rows with malformed JSON or invalid shape
+ * are silently skipped; only schema-valid Findings are returned.
+ */
+export declare class FactStoreFindingSource implements FindingSource {
+    private readonly store;
+    private readonly scope;
+    constructor(store: FactStore, scope?: string);
+    read(): Finding[];
+}
+//# sourceMappingURL=finding-source.d.ts.map

package/dist/hub/finding-source.d.ts.map

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package/dist/hub/finding-source.js

@@ -0,0 +1,41 @@
+import { FindingSchema } from "./finding.js";
+// ── Constants ────────────────────────────────────────────────────────
+/** FactStore scope/namespace the hub stores its own findings under. */
+export const HUB_SCOPE = "hub";
+// ── FactStoreFindingSource ───────────────────────────────────────────
+/**
+ * Reads predicate-'finding' rows from one FactStore scope,
+ * JSON-parses and validates each row value into a Finding.
+ *
+ * Contract: never throws. Rows with malformed JSON or invalid shape
+ * are silently skipped; only schema-valid Findings are returned.
+ */
+export class FactStoreFindingSource {
+    store;
+    scope;
+    constructor(store, scope = HUB_SCOPE) {
+        this.store = store;
+        this.scope = scope;
+    }
+    read() {
+        const rows = this.store.getActiveFacts(this.scope, undefined, "finding");
+        const findings = [];
+        for (const row of rows) {
+            let parsed;
+            try {
+                parsed = JSON.parse(row.value);
+            }
+            catch {
+                // malformed JSON — skip, never throw (sc-1-3)
+                continue;
+            }
+            const result = FindingSchema.safeParse(parsed);
+            if (result.success) {
+                findings.push(result.data);
+            }
+            // schema-invalid value — skip silently
+        }
+        return findings;
+    }
+}
+//# sourceMappingURL=finding-source.js.map

package/dist/hub/finding-source.js.map

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package/dist/hub/finding-store.d.ts

@@ -0,0 +1,68 @@
+import type { Finding } from "./finding.js";
+import type { FactStore } from "../state/facts.js";
+import type { ReconcileAction } from "../state/facts.js";
+/**
+ * Persist a Finding into the hub pool via the reconcile layer.
+ * Routes through writeFact (not raw insertFact) so dedup/supersede works.
+ *
+ * PURE: never reads the clock; `now` is injected by the CLI boundary.
+ */
+export declare function writeFinding(store: FactStore, finding: Finding, { now }: {
+    now: string;
+}): Promise<ReconcileAction>;
+/**
+ * Read all active hub Findings from the store.
+ * Uses FindingSchema.parse — throws on malformed rows (unlike the
+ * safeParse+skip approach in FactStoreFindingSource).
+ */
+export declare function readFindings(store: FactStore): Finding[];
+/**
+ * Read the active Finding for `id`, apply `newStatus` (+ optional field
+ * mutation), and write it back via writeFinding. Because subject=id and
+ * predicate='finding' are unchanged but the value differs, reconcileFact
+ * takes the UPDATE branch (supersede old + insert new), preserving the
+ * prior row as bitemporal history (reconcile.ts:70-78).
+ *
+ * Returns the new Finding, or null if no active Finding has that id.
+ * PURE: never reads the clock — `now` is injected at the CLI boundary.
+ */
+export declare function transitionFinding(store: FactStore, id: string, newStatus: Finding["status"], { now, mutate }: {
+    now: string;
+    mutate?: Partial<Finding>;
+}): Promise<Finding | null>;
+/** Tag prefix used to encode the wake time on a snoozed Finding. */
+export declare const SNOOZE_TAG_PREFIX = "snooze-until:";
+/**
+ * Extract the wake-time ISO string from a Finding's tags, or null if absent
+ * or if no valid snooze-until tag exists.
+ * PURE: no clock read; tag parsing only.
+ */
+export declare function snoozeUntil(finding: Finding): string | null;
+/**
+ * Returns true when a Finding should appear in the default task list.
+ *
+ * Visibility rules:
+ *  - open / in-progress → always visible
+ *  - snoozed + valid wake time in the future (wake > now) → hidden
+ *  - snoozed + wake time <= now (past or present) → visible again
+ *  - snoozed + no snooze-until tag → visible (user must re-triage)
+ *  - done / dropped → not visible
+ *
+ * PURE: `now` is injected; no Date.now() or new Date() inside.
+ * Lexicographic ISO compare is safe because both sides are toISOString()
+ * output (YYYY-MM-DDTHH:mm:ss.sssZ — fixed-width, lexicographically ordered).
+ */
+export declare function isVisibleInDefaultList(finding: Finding, now: string): boolean;
+/**
+ * Validate + normalize a domain-supplied Finding payload, then persist it via
+ * writeFinding so reconcile dedups a re-surfaced finding to a single active row.
+ *
+ * - Validates with .parse — THROWS on a missing required field (caught at the CLI boundary).
+ * - Derives a content-stable id from domain|title|kind when absent (supplied id is kept).
+ * - Sets surfacedAt = now when absent. PURE: never reads the clock; `now` is injected.
+ * Returns the ReconcileAction (add | update | delete | noop).
+ */
+export declare function ingestFinding(store: FactStore, input: unknown, { now }: {
+    now: string;
+}): Promise<ReconcileAction>;
+//# sourceMappingURL=finding-store.d.ts.map

package/dist/hub/finding-store.d.ts.map

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