agent-bober 0.17.1 → 0.19.0

package/dist/medical/analysis/trends.js

@@ -0,0 +1,157 @@
+/**
+ * Lab trend analyzer — deterministic reference-range and slope rules.
+ *
+ * PURE / NO network / NO LLM / NO Date.now() / NO async / NO fs.
+ * Identical input => identical output.
+ *
+ * ADR-3: The LLM NEVER performs arithmetic. All trend math is delegated exclusively to
+ * NumericsQueryLayer.getLabTrend (slope + latestValue). No hand-rolled slope arithmetic.
+ *
+ * Rules:
+ *   A. Reference-range crossing: latestValue outside [referenceLow, referenceHigh]
+ *      → kind 'watch' (severity 3, urgency 3);
+ *        >20% beyond the edge → kind 'risk' (severity 4, urgency 4).
+ *   B. Slope-toward-edge: slope != null, value is in range, trending toward the nearer
+ *      reference edge with a projected crossing → kind 'watch' (severity 2, urgency 2).
+ *
+ * Abstains (empty findings) when sampleCount === 0 for a biomarker.
+ * Reference range is read from store.getLabSeries (LabTrend does not carry it).
+ */
+import { NumericsQueryLayer } from "../numerics.js";
+import { findingId } from "./finding.js";
+// -- Internal helpers -----------------------------------------------------
+/**
+ * Build a MedicalFinding for a detected trend condition.
+ * Uses findingId with domain|biomarker|ruleKey (NOT now) for idempotency.
+ */
+function makeFinding(biomarker, ruleKey, title, kind, urgency, severity, evidence, now) {
+    return {
+        id: findingId("medical", biomarker, ruleKey),
+        domain: "medical",
+        title,
+        kind,
+        urgency,
+        severity,
+        evidence,
+        surfacedAt: now,
+        tags: ["lab-trend", biomarker],
+        status: "open",
+    };
+}
+// -- Rule A ---------------------------------------------------------------
+/**
+ * Apply Rule A: latestValue outside [referenceLow, referenceHigh].
+ *   - >20% beyond edge → 'risk', severity 4, urgency 4
+ *   - ≤20% beyond edge → 'watch', severity 3, urgency 3
+ *
+ * Returns a finding or undefined when in range.
+ */
+function applyRuleA(biomarker, latestValue, latestUnit, referenceLow, referenceHigh, now) {
+    // Above referenceHigh
+    if (referenceHigh !== undefined && latestValue > referenceHigh) {
+        const pctBeyond = referenceHigh !== 0 ? (latestValue - referenceHigh) / referenceHigh : 0;
+        const isRisk = pctBeyond > 0.2;
+        const kind = isRisk ? "risk" : "watch";
+        const severity = isRisk ? 4 : 3;
+        const urgency = isRisk ? 4 : 3;
+        const ruleKey = isRisk ? "rule-a-high-risk" : "rule-a-high";
+        const evidence = [
+            `${biomarker} = ${latestValue} ${latestUnit} (reference: ≤${referenceHigh} ${latestUnit})`,
+            `${(pctBeyond * 100).toFixed(1)}% above upper reference limit`,
+        ];
+        return makeFinding(biomarker, ruleKey, `${biomarker}: above reference range`, kind, urgency, severity, evidence, now);
+    }
+    // Below referenceLow
+    if (referenceLow !== undefined && latestValue < referenceLow) {
+        const divisor = Math.abs(referenceLow) > 0 ? referenceLow : 1;
+        const pctBeyond = (referenceLow - latestValue) / divisor;
+        const isRisk = pctBeyond > 0.2;
+        const kind = isRisk ? "risk" : "watch";
+        const severity = isRisk ? 4 : 3;
+        const urgency = isRisk ? 4 : 3;
+        const ruleKey = isRisk ? "rule-a-low-risk" : "rule-a-low";
+        const evidence = [
+            `${biomarker} = ${latestValue} ${latestUnit} (reference: ≥${referenceLow} ${latestUnit})`,
+            `${(pctBeyond * 100).toFixed(1)}% below lower reference limit`,
+        ];
+        return makeFinding(biomarker, ruleKey, `${biomarker}: below reference range`, kind, urgency, severity, evidence, now);
+    }
+    return undefined;
+}
+// -- Rule B ---------------------------------------------------------------
+/**
+ * Apply Rule B: value is in range, slope != null, trending toward the nearer reference edge.
+ * The slope direction (positive toward high edge, negative toward low edge) combined with
+ * which edge is nearer determines whether there is a projected crossing.
+ *
+ * Returns a finding or undefined when no projected crossing is detected.
+ */
+function applyRuleB(biomarker, latestValue, latestUnit, slope, referenceLow, referenceHigh, now) {
+    if (referenceLow === undefined && referenceHigh === undefined)
+        return undefined;
+    const distToHigh = referenceHigh !== undefined ? referenceHigh - latestValue : Infinity;
+    const distToLow = referenceLow !== undefined ? latestValue - referenceLow : Infinity;
+    // Trending upward toward referenceHigh and high edge is nearer (or the only bound)
+    if (slope > 0 && referenceHigh !== undefined && distToHigh <= distToLow && distToHigh > 0) {
+        const evidence = [
+            `${biomarker} = ${latestValue} ${latestUnit}, rising trend (slope > 0)`,
+            `Upper reference limit: ${referenceHigh} ${latestUnit} (${distToHigh.toFixed(2)} ${latestUnit} away)`,
+        ];
+        return makeFinding(biomarker, "rule-b-high", `${biomarker}: rising trend toward upper reference limit`, "watch", 2, 2, evidence, now);
+    }
+    // Trending downward toward referenceLow and low edge is nearer (or the only bound)
+    if (slope < 0 && referenceLow !== undefined && distToLow <= distToHigh && distToLow > 0) {
+        const evidence = [
+            `${biomarker} = ${latestValue} ${latestUnit}, falling trend (slope < 0)`,
+            `Lower reference limit: ${referenceLow} ${latestUnit} (${distToLow.toFixed(2)} ${latestUnit} away)`,
+        ];
+        return makeFinding(biomarker, "rule-b-low", `${biomarker}: falling trend toward lower reference limit`, "watch", 2, 2, evidence, now);
+    }
+    return undefined;
+}
+// -- Public API -----------------------------------------------------------
+/**
+ * Analyze lab trends for a set of biomarkers and return detected findings.
+ *
+ * PURE, synchronous, deterministic. No async, no fs, no network, no LLM.
+ * Delegates ALL trend math to NumericsQueryLayer.getLabTrend (ADR-3).
+ * Reference ranges are read from store.getLabSeries (LabTrend does not carry them).
+ *
+ * @param store       HealthDataStore (caller is responsible for lifecycle)
+ * @param biomarkers  List of biomarker names to analyze
+ * @param opts        { now: ISO 8601 injected timestamp }
+ */
+export function analyzeTrends(store, biomarkers, opts) {
+    const numerics = new NumericsQueryLayer(store);
+    const findings = [];
+    for (const biomarker of biomarkers) {
+        const trend = numerics.getLabTrend(biomarker);
+        // Abstain when no data (sc-1-2, sc-1-3)
+        if (trend.sampleCount === 0)
+            continue;
+        if (trend.latestValue === null)
+            continue;
+        // Read reference range from the latest LabResult (LabTrend does not carry it)
+        const series = store.getLabSeries(biomarker);
+        const latestResult = series[series.length - 1];
+        if (!latestResult)
+            continue;
+        const { referenceLow, referenceHigh } = latestResult;
+        const { latestValue, latestUnit } = trend;
+        // Rule A: reference-range crossing (takes precedence over Rule B)
+        const ruleAFinding = applyRuleA(biomarker, latestValue, latestUnit, referenceLow, referenceHigh, opts.now);
+        if (ruleAFinding !== undefined) {
+            findings.push(ruleAFinding);
+            continue; // Rule A takes precedence; Rule B not evaluated for this biomarker
+        }
+        // Rule B: slope-toward-edge (only when in range and sampleCount >= 2 for valid slope)
+        if (trend.slope !== null && trend.sampleCount >= 2) {
+            const ruleBFinding = applyRuleB(biomarker, latestValue, latestUnit, trend.slope, referenceLow, referenceHigh, opts.now);
+            if (ruleBFinding !== undefined) {
+                findings.push(ruleBFinding);
+            }
+        }
+    }
+    return findings;
+}
+//# sourceMappingURL=trends.js.map

package/dist/medical/analysis/trends.js.map

@@ -0,0 +1 @@
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package/dist/medical/audit.d.ts

@@ -0,0 +1,31 @@
+import type { AuditEntry } from "./types.js";
+/**
+ * Appends structured audit entries to .bober/medical/audit-<date>.jsonl.
+ *
+ * File is opened O_APPEND|O_CREAT with mode 0600. The date in the filename
+ * is derived from the INJECTED tIso field of each entry — never the wall clock.
+ *
+ * PHI rule: entries hold IDs/enums ONLY (tIso, event, rulesetVersion?,
+ * patternsetVersion?, ruleId?). NEVER serialize prompt text or health values.
+ *
+ * bober: single-process append; if multi-process concurrent writes are needed,
+ *        swap for a SQLite WAL or a locking file-writer.
+ */
+export declare class AuditLog {
+    private readonly projectRoot;
+    constructor(projectRoot: string);
+    /**
+     * Filename derives from the INJECTED tIso (YYYY-MM-DD slice).
+     * Never Date.now().
+     */
+    private path;
+    /**
+     * Append one AuditEntry as a newline-terminated JSON line.
+     *
+     * Uses O_APPEND|O_CREAT with mode 0600 and an explicit fh.chmod(0600)
+     * to guarantee the file mode even if umask would reduce it.
+     * NEVER uses appendFile — it does not reliably honour the mode argument.
+     */
+    append(entry: AuditEntry): Promise<void>;
+}
+//# sourceMappingURL=audit.d.ts.map

package/dist/medical/audit.d.ts.map

@@ -0,0 +1 @@
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package/dist/medical/audit.js

@@ -0,0 +1,56 @@
+/** AuditLog — append-only IDs/enums-only medical audit log (Phase 6, Sprint 2). */
+import { open, mkdir } from "node:fs/promises";
+import { constants } from "node:fs";
+import { join } from "node:path";
+// ── AuditLog ────────────────────────────────────────────────────────
+/**
+ * Appends structured audit entries to .bober/medical/audit-<date>.jsonl.
+ *
+ * File is opened O_APPEND|O_CREAT with mode 0600. The date in the filename
+ * is derived from the INJECTED tIso field of each entry — never the wall clock.
+ *
+ * PHI rule: entries hold IDs/enums ONLY (tIso, event, rulesetVersion?,
+ * patternsetVersion?, ruleId?). NEVER serialize prompt text or health values.
+ *
+ * bober: single-process append; if multi-process concurrent writes are needed,
+ *        swap for a SQLite WAL or a locking file-writer.
+ */
+export class AuditLog {
+    projectRoot;
+    constructor(projectRoot) {
+        this.projectRoot = projectRoot;
+    }
+    // ── Path helpers ──────────────────────────────────────────────────
+    /**
+     * Filename derives from the INJECTED tIso (YYYY-MM-DD slice).
+     * Never Date.now().
+     */
+    path(tIso) {
+        const date = tIso.slice(0, 10); // "2026-06-16"
+        return join(this.projectRoot, ".bober", "medical", `audit-${date}.jsonl`);
+    }
+    // ── append ────────────────────────────────────────────────────────
+    /**
+     * Append one AuditEntry as a newline-terminated JSON line.
+     *
+     * Uses O_APPEND|O_CREAT with mode 0600 and an explicit fh.chmod(0600)
+     * to guarantee the file mode even if umask would reduce it.
+     * NEVER uses appendFile — it does not reliably honour the mode argument.
+     */
+    async append(entry) {
+        const dir = join(this.projectRoot, ".bober", "medical");
+        await mkdir(dir, { recursive: true, mode: 0o700 });
+        const line = JSON.stringify(entry) + "\n";
+        const flags = constants.O_WRONLY | constants.O_APPEND | constants.O_CREAT;
+        const fh = await open(this.path(entry.tIso), flags, 0o600);
+        try {
+            // Guarantee mode 0600 even if umask would have reduced it.
+            await fh.chmod(0o600);
+            await fh.write(line);
+        }
+        finally {
+            await fh.close();
+        }
+    }
+}
+//# sourceMappingURL=audit.js.map

package/dist/medical/audit.js.map

@@ -0,0 +1 @@
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package/dist/medical/consent.d.ts

@@ -0,0 +1,37 @@
+import type { AuditLog } from "./audit.js";
+import type { ConsentRecord } from "./types.js";
+/**
+ * Manages consent persistence at .bober/medical/consent.json.
+ *
+ * Fail-closed: a missing or corrupt consent.json returns false/undefined —
+ * the engine refuses rather than proceeding without consent.
+ *
+ * Depends on AuditLog to record a 'consent' entry on recordConsent().
+ *
+ * bober: JSON file sidecar; if multi-session concurrent access is needed,
+ *        migrate to the SQLite FactStore (see src/state/facts.ts).
+ */
+export declare class ConsentGate {
+    private readonly projectRoot;
+    private readonly audit;
+    constructor(projectRoot: string, audit: AuditLog);
+    private path;
+    /**
+     * Fail-closed: missing or corrupt file returns false. Never throws.
+     * Reads .bober/medical/consent.json via node:fs/promises.
+     */
+    hasConsent(): Promise<boolean>;
+    /**
+     * Returns the parsed ConsentRecord, or undefined if missing/corrupt.
+     * Validates required fields — a partial/corrupt record returns undefined.
+     */
+    current(): Promise<ConsentRecord | undefined>;
+    /**
+     * Persist a ConsentRecord (mode 0600) AND append a 'consent' audit entry.
+     *
+     * @param record - The consent record to persist.
+     * @param nowIso - INJECTED ISO 8601 timestamp — never wall-clock.
+     */
+    recordConsent(record: ConsentRecord, nowIso: string): Promise<void>;
+}
+//# sourceMappingURL=consent.d.ts.map

package/dist/medical/consent.d.ts.map

@@ -0,0 +1 @@
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package/dist/medical/consent.js

@@ -0,0 +1,73 @@
+/** ConsentGate — fail-closed first-run consent (Phase 6, Sprint 2). */
+import { readFile, writeFile } from "node:fs/promises";
+import { join } from "node:path";
+import { ensureDir } from "../utils/fs.js";
+// ── ConsentGate ─────────────────────────────────────────────────────
+/**
+ * Manages consent persistence at .bober/medical/consent.json.
+ *
+ * Fail-closed: a missing or corrupt consent.json returns false/undefined —
+ * the engine refuses rather than proceeding without consent.
+ *
+ * Depends on AuditLog to record a 'consent' entry on recordConsent().
+ *
+ * bober: JSON file sidecar; if multi-session concurrent access is needed,
+ *        migrate to the SQLite FactStore (see src/state/facts.ts).
+ */
+export class ConsentGate {
+    projectRoot;
+    audit;
+    constructor(projectRoot, audit) {
+        this.projectRoot = projectRoot;
+        this.audit = audit;
+    }
+    // ── Path ──────────────────────────────────────────────────────────
+    path() {
+        return join(this.projectRoot, ".bober", "medical", "consent.json");
+    }
+    // ── Read ──────────────────────────────────────────────────────────
+    /**
+     * Fail-closed: missing or corrupt file returns false. Never throws.
+     * Reads .bober/medical/consent.json via node:fs/promises.
+     */
+    async hasConsent() {
+        return (await this.current()) !== undefined;
+    }
+    /**
+     * Returns the parsed ConsentRecord, or undefined if missing/corrupt.
+     * Validates required fields — a partial/corrupt record returns undefined.
+     */
+    async current() {
+        try {
+            const data = JSON.parse(await readFile(this.path(), "utf-8"));
+            // Validate required fields for fail-closed behaviour on partial records.
+            if (typeof data.consentVersion !== "string" ||
+                typeof data.acceptedAtIso !== "string" ||
+                typeof data.rulesetVersion !== "string" ||
+                typeof data.disclaimerVersion !== "string") {
+                return undefined;
+            }
+            return data;
+        }
+        catch {
+            return undefined;
+        }
+    }
+    // ── Write ─────────────────────────────────────────────────────────
+    /**
+     * Persist a ConsentRecord (mode 0600) AND append a 'consent' audit entry.
+     *
+     * @param record - The consent record to persist.
+     * @param nowIso - INJECTED ISO 8601 timestamp — never wall-clock.
+     */
+    async recordConsent(record, nowIso) {
+        await ensureDir(join(this.projectRoot, ".bober", "medical"));
+        await writeFile(this.path(), JSON.stringify(record, null, 2) + "\n", { encoding: "utf-8", mode: 0o600 });
+        await this.audit.append({
+            tIso: nowIso,
+            event: "consent",
+            rulesetVersion: record.rulesetVersion,
+        });
+    }
+}
+//# sourceMappingURL=consent.js.map

package/dist/medical/consent.js.map

@@ -0,0 +1 @@
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package/dist/medical/disclaimer.d.ts

@@ -0,0 +1,11 @@
+/** DisclaimerComposer — versioned per-response wellness footer (Phase 6, Sprint 2). */
+/**
+ * Produces a versioned per-response wellness disclaimer footer.
+ * Pure — no I/O, no side effects.
+ */
+export declare class DisclaimerComposer {
+    readonly disclaimerVersion = "1.0.0";
+    /** Returns a non-empty footer string carrying the disclaimerVersion. */
+    footer(): string;
+}
+//# sourceMappingURL=disclaimer.d.ts.map

package/dist/medical/disclaimer.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"disclaimer.d.ts","sourceRoot":"","sources":["../../src/medical/disclaimer.ts"],"names":[],"mappings":"AAAA,uFAAuF;AAcvF;;;GAGG;AACH,qBAAa,kBAAkB;IAC7B,QAAQ,CAAC,iBAAiB,WAAsB;IAEhD,wEAAwE;IACxE,MAAM,IAAI,MAAM;CAGjB"}

package/dist/medical/disclaimer.js

@@ -0,0 +1,21 @@
+/** DisclaimerComposer — versioned per-response wellness footer (Phase 6, Sprint 2). */
+// ── DisclaimerComposer ──────────────────────────────────────────────
+const DISCLAIMER_VERSION = "1.0.0";
+/**
+ * General-wellness disclaimer text. Non-diagnostic, non-treatment.
+ * Consistent with FFDCA §201(h) / GW-safe-harbor posture.
+ */
+const FOOTER_TEXT = "General wellness information only — not medical advice, diagnosis, or treatment. " +
+    "Consult a licensed professional. In an emergency call your local emergency number.";
+/**
+ * Produces a versioned per-response wellness disclaimer footer.
+ * Pure — no I/O, no side effects.
+ */
+export class DisclaimerComposer {
+    disclaimerVersion = DISCLAIMER_VERSION;
+    /** Returns a non-empty footer string carrying the disclaimerVersion. */
+    footer() {
+        return `${FOOTER_TEXT} [disclaimer v${this.disclaimerVersion}]`;
+    }
+}
+//# sourceMappingURL=disclaimer.js.map

package/dist/medical/disclaimer.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"disclaimer.js","sourceRoot":"","sources":["../../src/medical/disclaimer.ts"],"names":[],"mappings":"AAAA,uFAAuF;AAEvF,uEAAuE;AAEvE,MAAM,kBAAkB,GAAG,OAAO,CAAC;AAEnC;;;GAGG;AACH,MAAM,WAAW,GACf,mFAAmF;IACnF,oFAAoF,CAAC;AAEvF;;;GAGG;AACH,MAAM,OAAO,kBAAkB;IACpB,iBAAiB,GAAG,kBAAkB,CAAC;IAEhD,wEAAwE;IACxE,MAAM;QACJ,OAAO,GAAG,WAAW,iBAAiB,IAAI,CAAC,iBAAiB,GAAG,CAAC;IAClE,CAAC;CACF"}

package/dist/medical/egress.d.ts

@@ -0,0 +1,30 @@
+/** EgressGuard — three independently opt-in egress axes, all default false (Phase 6, Sprint 6; ADR-6). */
+import type { BoberConfig } from "../config/schema.js";
+/** The three independent egress axes. All default FALSE (code-enforced zero-egress, ADR-6). */
+export type EgressAxis = "cloud-inference" | "literature-retrieval" | "device-connection";
+/**
+ * Guards outbound egress for the medical pipeline.
+ *
+ * Three axes operate INDEPENDENTLY — enabling one does NOT enable the others.
+ * All default false when absent from config. assertAllowed throws if the axis
+ * is not opted in, providing a hard code-enforced barrier.
+ *
+ * bober: plain decision object; no network import here; swap for ABAC policy if
+ *        per-user granularity is needed.
+ */
+export declare class EgressGuard {
+    private readonly cloudInference;
+    private readonly literatureRetrieval;
+    private readonly deviceConnection;
+    constructor(cloudInference: boolean, literatureRetrieval: boolean, deviceConnection?: boolean);
+    /** Build from BoberConfig medical section; all axes default false when absent. */
+    static fromConfig(config: BoberConfig): EgressGuard;
+    /** Returns true only when the axis has been explicitly opted in via config. */
+    isAllowed(axis: EgressAxis): boolean;
+    /**
+     * Throws an Error when the axis is not enabled.
+     * Returns void (not throws) when the axis is allowed.
+     */
+    assertAllowed(axis: EgressAxis): void;
+}
+//# sourceMappingURL=egress.d.ts.map

package/dist/medical/egress.d.ts.map

@@ -0,0 +1 @@
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package/dist/medical/egress.js

@@ -0,0 +1,50 @@
+/**
+ * Guards outbound egress for the medical pipeline.
+ *
+ * Three axes operate INDEPENDENTLY — enabling one does NOT enable the others.
+ * All default false when absent from config. assertAllowed throws if the axis
+ * is not opted in, providing a hard code-enforced barrier.
+ *
+ * bober: plain decision object; no network import here; swap for ABAC policy if
+ *        per-user granularity is needed.
+ */
+export class EgressGuard {
+    cloudInference;
+    literatureRetrieval;
+    deviceConnection;
+    constructor(cloudInference, literatureRetrieval, deviceConnection = false) {
+        this.cloudInference = cloudInference;
+        this.literatureRetrieval = literatureRetrieval;
+        this.deviceConnection = deviceConnection;
+    }
+    /** Build from BoberConfig medical section; all axes default false when absent. */
+    static fromConfig(config) {
+        const med = config.medical;
+        return new EgressGuard(med?.egress?.cloudInference ?? false, med?.egress?.literatureRetrieval ?? false, med?.egress?.deviceConnection ?? false);
+    }
+    /** Returns true only when the axis has been explicitly opted in via config. */
+    isAllowed(axis) {
+        switch (axis) {
+            case "cloud-inference":
+                return this.cloudInference;
+            case "literature-retrieval":
+                return this.literatureRetrieval;
+            case "device-connection":
+                return this.deviceConnection;
+            default: {
+                const _exhaustive = axis; // compile error if an EgressAxis value is unhandled
+                return _exhaustive;
+            }
+        }
+    }
+    /**
+     * Throws an Error when the axis is not enabled.
+     * Returns void (not throws) when the axis is allowed.
+     */
+    assertAllowed(axis) {
+        if (!this.isAllowed(axis)) {
+            throw new Error(`Egress axis '${axis}' not enabled`);
+        }
+    }
+}
+//# sourceMappingURL=egress.js.map

package/dist/medical/egress.js.map

@@ -0,0 +1 @@
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package/dist/medical/engine.d.ts

@@ -0,0 +1,73 @@
+/**
+ * MedicalSopEngine — Full SOP wired (Phase 6, Sprint 6).
+ *
+ * Implements PipelineEngine with pipelineShape 'medical-sop'.
+ * Full ordered SOP:
+ *   Gate 1 (consent)   → fail-closed, ZERO downstream on refuse
+ *   Gate 2 (red-flag)  → 0-LLM short-circuit on emergency match
+ *   (3) NumericsQueryLayer — deterministic compute, NO LLM
+ *   (4) FactStore.getActiveFacts — active medications (ADR-7)
+ *   Gate 3 (EgressGuard) → literature-retrieval axis, default false
+ *   (5) LiteratureRetriever.retrieve — {disabled} sync when axis off → ABSTAIN
+ *   (6) DisclaimerComposer.footer
+ *   (7) AuditLog.append("answer" | "abstain")
+ *   (8) return PipelineResult & { medicalAnswer }
+ *
+ * Zero-arg constructor preserved for selector.ts:126.
+ * All timestamps injected via opts.now — never the wall clock.
+ * No LLM calls, no SDK imports. No network import.
+ */
+import type { BoberConfig } from "../config/schema.js";
+import type { PipelineResult } from "../orchestrator/pipeline.js";
+import type { PipelineEngine, PipelineEngineName } from "../orchestrator/workflow/engine.js";
+import { AuditLog } from "./audit.js";
+import { ConsentGate } from "./consent.js";
+import { DisclaimerComposer } from "./disclaimer.js";
+import { EgressGuard } from "./egress.js";
+import { LiteratureRetriever } from "./retrieval/literature.js";
+import { HealthDataStore } from "./health-store.js";
+import { FactStore } from "../state/facts.js";
+import type { GuardrailSet } from "./types.js";
+import type { LLMClient } from "../providers/types.js";
+/**
+ * Optional deps injected by tests.
+ * Production code leaves this undefined; run() constructs real instances.
+ * bober: simple optional-deps seam; swap for a DI container if the dep graph grows.
+ */
+export interface MedicalSopDeps {
+    auditLog?: AuditLog;
+    consentGate?: ConsentGate;
+    disclaimer?: DisclaimerComposer;
+    /** Inject the real MedicalGuardrails (or a test fake). Sprint 3. */
+    guardrails?: GuardrailSet;
+    /** Spy/fake LLMClient — asserted NEVER called on red-flag short-circuit (carry-forward S2 fix). */
+    llmClient?: LLMClient;
+    /** Spy/fake numerics layer — asserted NEVER called on red-flag short-circuit. */
+    numerics?: () => unknown;
+    /** Injected EgressGuard for tests. Production builds from config. */
+    egress?: EgressGuard;
+    /** Injected LiteratureRetriever for tests. Production uses EgressGuard from config. */
+    literature?: LiteratureRetriever;
+    /** Injected FactStore for medications (tests pass :memory:). */
+    facts?: FactStore;
+    /** Injected HealthDataStore for numerics (tests pass :memory:). */
+    healthStore?: HealthDataStore;
+}
+/**
+ * Medical-SOP pipeline engine.
+ *
+ * Zero-arg constructor is preserved so that src/orchestrator/workflow/selector.ts
+ * can call `new MedicalSopEngine()` without changes (Sprint 1 contract).
+ * Fakes are injected via the optional `deps` constructor argument.
+ */
+export declare class MedicalSopEngine implements PipelineEngine {
+    private readonly deps?;
+    readonly name: PipelineEngineName;
+    constructor(deps?: MedicalSopDeps | undefined);
+    run(userPrompt: string, projectRoot: string, config: BoberConfig, // was _config — now consumed (EgressGuard.fromConfig)
+    opts?: {
+        runId?: string;
+        now?: string;
+    }): Promise<PipelineResult>;
+}
+//# sourceMappingURL=engine.d.ts.map

package/dist/medical/engine.d.ts.map

@@ -0,0 +1 @@
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