@zeyue0329/xiaoma-cli 1.0.49 → 6.0.0-alpha.14

package/tools/cli/installers/lib/core/installer.js

@@ -0,0 +1,2956 @@
+/**
+ * File: tools/cli/installers/lib/core/installer.js
+ *
+ * XIAOMA Method - Business Model Agile Development Method
+ * Repository: https://github.com/paulpreibisch/XIAOMA-CLI
+ *
+ * Copyright (c) 2025 Paul Preibisch
+ * Licensed under the Apache License, Version 2.0
+ *
+ * ---
+ *
+ * @fileoverview Core XIAOMA installation orchestrator with AgentVibes injection point support
+ * @context Manages complete XIAOMA installation flow including core agents, modules, IDE configs, and optional TTS integration
+ * @architecture Orchestrator pattern - coordinates Detector, ModuleManager, IdeManager, and file operations to build complete XIAOMA installation
+ * @dependencies fs-extra, ora, chalk, detector.js, module-manager.js, ide-manager.js, config.js
+ * @entrypoints Called by install.js command via installer.install(config)
+ * @patterns Injection point processing (AgentVibes), placeholder replacement ({xiaoma_folder}), module dependency resolution
+ * @related GitHub AgentVibes#34 (injection points), ui.js (user prompts), copyFileWithPlaceholderReplacement()
+ */
+
+const path = require('node:path');
+const fs = require('fs-extra');
+const chalk = require('chalk');
+const ora = require('ora');
+const { Detector } = require('./detector');
+const { Manifest } = require('./manifest');
+const { ModuleManager } = require('../modules/manager');
+const { IdeManager } = require('../ide/manager');
+const { FileOps } = require('../../../lib/file-ops');
+const { Config } = require('../../../lib/config');
+const { XmlHandler } = require('../../../lib/xml-handler');
+const { DependencyResolver } = require('./dependency-resolver');
+const { ConfigCollector } = require('./config-collector');
+// processInstallation no longer needed - LLMs understand {project-root}
+const { getProjectRoot, getSourcePath, getModulePath } = require('../../../lib/project-root');
+const { AgentPartyGenerator } = require('../../../lib/agent-party-generator');
+const { CLIUtils } = require('../../../lib/cli-utils');
+const { ManifestGenerator } = require('./manifest-generator');
+const { IdeConfigManager } = require('./ide-config-manager');
+
+class Installer {
+  constructor() {
+    this.detector = new Detector();
+    this.manifest = new Manifest();
+    this.moduleManager = new ModuleManager();
+    this.ideManager = new IdeManager();
+    this.fileOps = new FileOps();
+    this.config = new Config();
+    this.xmlHandler = new XmlHandler();
+    this.dependencyResolver = new DependencyResolver();
+    this.configCollector = new ConfigCollector();
+    this.ideConfigManager = new IdeConfigManager();
+    this.installedFiles = []; // Track all installed files
+  }
+
+  /**
+   * Find the xiaoma installation directory in a project
+   * V6+ installations can use ANY folder name but ALWAYS have _cfg/manifest.yaml
+   * @param {string} projectDir - Project directory
+   * @returns {Promise<string>} Path to xiaoma directory
+   */
+  async findBmadDir(projectDir) {
+    // Check if project directory exists
+    if (!(await fs.pathExists(projectDir))) {
+      // Project doesn't exist yet, return default
+      return path.join(projectDir, 'xiaoma');
+    }
+
+    // V6+ strategy: Look for ANY directory with _cfg/manifest.yaml
+    // This is the definitive marker of a V6+ installation
+    try {
+      const entries = await fs.readdir(projectDir, { withFileTypes: true });
+      for (const entry of entries) {
+        if (entry.isDirectory()) {
+          const manifestPath = path.join(projectDir, entry.name, '_cfg', 'manifest.yaml');
+          if (await fs.pathExists(manifestPath)) {
+            // Found a V6+ installation
+            return path.join(projectDir, entry.name);
+          }
+        }
+      }
+    } catch {
+      // Ignore errors, fall through to default
+    }
+
+    // No V6+ installation found, return default
+    // This will be used for new installations
+    return path.join(projectDir, 'xiaoma');
+  }
+
+  /**
+   * @function copyFileWithPlaceholderReplacement
+   * @intent Copy files from XIAOMA source to installation directory with dynamic content transformation
+   * @why Enables installation-time customization: {xiaoma_folder} replacement + optional AgentVibes TTS injection
+   * @param {string} sourcePath - Absolute path to source file in XIAOMA repository
+   * @param {string} targetPath - Absolute path to destination file in user's project
+   * @param {string} xiaomaFolderName - User's chosen xiaoma folder name (default: 'xiaoma')
+   * @returns {Promise<void>} Resolves when file copy and transformation complete
+   * @sideeffects Writes transformed file to targetPath, creates parent directories if needed
+   * @edgecases Binary files bypass transformation, falls back to raw copy if UTF-8 read fails
+   * @calledby installCore(), installModule(), IDE installers during file vendoring
+   * @calls processTTSInjectionPoints(), fs.readFile(), fs.writeFile(), fs.copy()
+   *
+   * AI NOTE: This is the core transformation pipeline for ALL XIAOMA installation file copies.
+   * It performs two transformations in sequence:
+   * 1. {xiaoma_folder} → user's custom folder name (e.g., ".xiaoma" or "xiaoma")
+   * 2. <!-- TTS_INJECTION:* --> → TTS bash calls (if enabled) OR stripped (if disabled)
+   *
+   * The injection point processing enables loose coupling between XIAOMA and TTS providers:
+   * - XIAOMA source contains injection markers (not actual TTS code)
+   * - At install-time, markers are replaced OR removed based on user preference
+   * - Result: Clean installs for users without TTS, working TTS for users with it
+   *
+   * PATTERN: Adding New Injection Points
+   * =====================================
+   * 1. Add HTML comment marker in XIAOMA source file:
+   *    <!-- TTS_INJECTION:feature-name -->
+   *
+   * 2. Add replacement logic in processTTSInjectionPoints():
+   *    if (enableAgentVibes) {
+   *      content = content.replace(/<!-- TTS_INJECTION:feature-name -->/g, 'actual code');
+   *    } else {
+   *      content = content.replace(/<!-- TTS_INJECTION:feature-name -->\n?/g, '');
+   *    }
+   *
+   * 3. Document marker in instructions.md (if applicable)
+   */
+  async copyFileWithPlaceholderReplacement(sourcePath, targetPath, xiaomaFolderName) {
+    // List of text file extensions that should have placeholder replacement
+    const textExtensions = ['.md', '.yaml', '.yml', '.txt', '.json', '.js', '.ts', '.html', '.css', '.sh', '.bat', '.csv'];
+    const ext = path.extname(sourcePath).toLowerCase();
+
+    // Check if this is a text file that might contain placeholders
+    if (textExtensions.includes(ext)) {
+      try {
+        // Read the file content
+        let content = await fs.readFile(sourcePath, 'utf8');
+
+        // Replace {xiaoma_folder} placeholder with actual folder name
+        if (content.includes('{xiaoma_folder}')) {
+          content = content.replaceAll('{xiaoma_folder}', xiaomaFolderName);
+        }
+
+        // Process AgentVibes injection points
+        content = this.processTTSInjectionPoints(content);
+
+        // Write to target with replaced content
+        await fs.ensureDir(path.dirname(targetPath));
+        await fs.writeFile(targetPath, content, 'utf8');
+      } catch {
+        // If reading as text fails (might be binary despite extension), fall back to regular copy
+        await fs.copy(sourcePath, targetPath, { overwrite: true });
+      }
+    } else {
+      // Binary file or other file type - just copy directly
+      await fs.copy(sourcePath, targetPath, { overwrite: true });
+    }
+  }
+
+  /**
+   * @function processTTSInjectionPoints
+   * @intent Transform TTS injection markers based on user's installation choice
+   * @why Enables optional TTS integration without tight coupling between XIAOMA and TTS providers
+   * @param {string} content - Raw file content containing potential injection markers
+   * @returns {string} Transformed content with markers replaced (if enabled) or stripped (if disabled)
+   * @sideeffects None - pure transformation function
+   * @edgecases Returns content unchanged if no markers present, safe to call on all files
+   * @calledby copyFileWithPlaceholderReplacement() during every file copy operation
+   * @calls String.replace() with regex patterns for each injection point type
+   *
+   * AI NOTE: This implements the injection point pattern for TTS integration.
+   * Key architectural decisions:
+   *
+   * 1. **Why Injection Points vs Direct Integration?**
+   *    - XIAOMA and TTS providers are separate projects with different maintainers
+   *    - Users may install XIAOMA without TTS support (and vice versa)
+   *    - Hard-coding TTS calls would break XIAOMA for non-TTS users
+   *    - Injection points allow conditional feature inclusion at install-time
+   *
+   * 2. **How It Works:**
+   *    - XIAOMA source contains markers: <!-- TTS_INJECTION:feature-name -->
+   *    - During installation, user is prompted: "Enable AgentVibes TTS?"
+   *    - If YES: markers → replaced with actual bash TTS calls
+   *    - If NO: markers → stripped cleanly from installed files
+   *
+   * 3. **State Management:**
+   *    - this.enableAgentVibes set in install() method from config.enableAgentVibes
+   *    - config.enableAgentVibes comes from ui.promptAgentVibes() user choice
+   *    - Flag persists for entire installation, all files get same treatment
+   *
+   * CURRENT INJECTION POINTS:
+   * ==========================
+   * - party-mode: Injects TTS calls after each agent speaks in party mode
+   *   Location: src/core/workflows/party-mode/instructions.md
+   *   Marker: <!-- TTS_INJECTION:party-mode -->
+   *   Replacement: Bash call to .claude/hooks/xiaoma-speak.sh with agent name and dialogue
+   *
+   * - agent-tts: Injects TTS rule for individual agent conversations
+   *   Location: src/modules/xmc/agents/*.md (all agent files)
+   *   Marker: <!-- TTS_INJECTION:agent-tts -->
+   *   Replacement: Rule instructing agent to call xiaoma-speak.sh with agent ID and response
+   *
+   * ADDING NEW INJECTION POINTS:
+   * =============================
+   * 1. Add new case in this function:
+   *    content = content.replace(
+   *      /<!-- TTS_INJECTION:new-feature -->/g,
+   *      `code to inject when enabled`
+   *    );
+   *
+   * 2. Add marker to XIAOMA source file at injection location
+   *
+   * 3. Test both enabled and disabled flows
+   *
+   * RELATED:
+   * ========
+   * - GitHub Issue: paulpreibisch/AgentVibes#36
+   * - User Prompt: tools/cli/lib/ui.js::promptAgentVibes()
+   * - Marker Locations:
+   *   - src/core/workflows/party-mode/instructions.md:101
+   *   - src/modules/xmc/agents/*.md (rules sections)
+   * - TTS Hook: .claude/hooks/xiaoma-speak.sh (in AgentVibes repo)
+   */
+  processTTSInjectionPoints(content) {
+    // Check if AgentVibes is enabled (set during installation configuration)
+    const enableAgentVibes = this.enableAgentVibes || false;
+
+    if (enableAgentVibes) {
+      // Replace party-mode injection marker with actual TTS call
+      // Use single quotes to prevent shell expansion of special chars like !
+      content = content.replaceAll(
+        '<!-- TTS_INJECTION:party-mode -->',
+        `<critical>IMPORTANT: Always use PROJECT hooks (.claude/hooks/), NEVER global hooks (~/.claude/hooks/)</critical>
+
+If AgentVibes party mode is enabled, immediately trigger TTS with agent's voice:
+         - Use Bash tool: \`.claude/hooks/xiaoma-speak.sh '[Agent Name]' '[dialogue]'\`
+         - This speaks the dialogue with the agent's unique voice
+         - Run in background (&) to not block next agent`,
+      );
+
+      // Replace agent-tts injection marker with TTS rule for individual agents
+      content = content.replaceAll(
+        '<!-- TTS_INJECTION:agent-tts -->',
+        `- When responding to user messages, speak your responses using TTS:
+   Call: \`.claude/hooks/xiaoma-speak.sh '{agent-id}' '{response-text}'\` after each response
+   Replace {agent-id} with YOUR agent ID from <agent id="..."> tag at top of this file
+   Replace {response-text} with the text you just output to the user
+   IMPORTANT: Use single quotes as shown - do NOT escape special characters like ! or $ inside single quotes
+   Run in background (&) to avoid blocking`,
+      );
+    } else {
+      // Strip injection markers cleanly when AgentVibes is disabled
+      content = content.replaceAll(/<!-- TTS_INJECTION:party-mode -->\n?/g, '');
+      content = content.replaceAll(/<!-- TTS_INJECTION:agent-tts -->\n?/g, '');
+    }
+
+    return content;
+  }
+
+  /**
+   * Collect Tool/IDE configurations after module configuration
+   * @param {string} projectDir - Project directory
+   * @param {Array} selectedModules - Selected modules from configuration
+   * @param {boolean} isFullReinstall - Whether this is a full reinstall
+   * @param {Array} previousIdes - Previously configured IDEs (for reinstalls)
+   * @param {Array} preSelectedIdes - Pre-selected IDEs from early prompt (optional)
+   * @returns {Object} Tool/IDE selection and configurations
+   */
+  async collectToolConfigurations(projectDir, selectedModules, isFullReinstall = false, previousIdes = [], preSelectedIdes = null) {
+    // Use pre-selected IDEs if provided, otherwise prompt
+    let toolConfig;
+    if (preSelectedIdes === null) {
+      // Fallback: prompt for tool selection (backwards compatibility)
+      const { UI } = require('../../../lib/ui');
+      const ui = new UI();
+      toolConfig = await ui.promptToolSelection(projectDir, selectedModules);
+    } else {
+      // IDEs were already selected during initial prompts
+      toolConfig = {
+        ides: preSelectedIdes,
+        skipIde: !preSelectedIdes || preSelectedIdes.length === 0,
+      };
+    }
+
+    // Check for already configured IDEs
+    const { Detector } = require('./detector');
+    const detector = new Detector();
+    const xiaomaDir = path.join(projectDir, this.xiaomaFolderName || 'xiaoma');
+
+    // During full reinstall, use the saved previous IDEs since xiaoma dir was deleted
+    // Otherwise detect from existing installation
+    let previouslyConfiguredIdes;
+    if (isFullReinstall) {
+      // During reinstall, treat all IDEs as new (need configuration)
+      previouslyConfiguredIdes = [];
+    } else {
+      const existingInstall = await detector.detect(xiaomaDir);
+      previouslyConfiguredIdes = existingInstall.ides || [];
+    }
+
+    // Load saved IDE configurations for already-configured IDEs
+    const savedIdeConfigs = await this.ideConfigManager.loadAllIdeConfigs(xiaomaDir);
+
+    // Collect IDE-specific configurations if any were selected
+    const ideConfigurations = {};
+
+    // First, add saved configs for already-configured IDEs
+    for (const ide of toolConfig.ides || []) {
+      if (previouslyConfiguredIdes.includes(ide) && savedIdeConfigs[ide]) {
+        ideConfigurations[ide] = savedIdeConfigs[ide];
+      }
+    }
+
+    if (!toolConfig.skipIde && toolConfig.ides && toolConfig.ides.length > 0) {
+      // Determine which IDEs are newly selected (not previously configured)
+      const newlySelectedIdes = toolConfig.ides.filter((ide) => !previouslyConfiguredIdes.includes(ide));
+
+      if (newlySelectedIdes.length > 0) {
+        console.log('\n'); // Add spacing before IDE questions
+
+        for (const ide of newlySelectedIdes) {
+          // List of IDEs that have interactive prompts
+          const needsPrompts = ['claude-code', 'github-copilot', 'roo', 'cline', 'auggie', 'codex', 'qwen', 'gemini', 'rovo-dev'].includes(
+            ide,
+          );
+
+          if (needsPrompts) {
+            // Get IDE handler and collect configuration
+            try {
+              // Dynamically load the IDE setup module
+              const ideModule = require(`../ide/${ide}`);
+
+              // Get the setup class (handle different export formats)
+              let SetupClass;
+              const className =
+                ide
+                  .split('-')
+                  .map((part) => part.charAt(0).toUpperCase() + part.slice(1))
+                  .join('') + 'Setup';
+
+              if (ideModule[className]) {
+                SetupClass = ideModule[className];
+              } else if (ideModule.default) {
+                SetupClass = ideModule.default;
+              } else {
+                // Skip if no setup class found
+                continue;
+              }
+
+              const ideSetup = new SetupClass();
+
+              // Check if this IDE has a collectConfiguration method
+              if (typeof ideSetup.collectConfiguration === 'function') {
+                console.log(chalk.cyan(`\nConfiguring ${ide}...`));
+                ideConfigurations[ide] = await ideSetup.collectConfiguration({
+                  selectedModules: selectedModules || [],
+                  projectDir,
+                  xiaomaDir,
+                });
+              }
+            } catch {
+              // IDE doesn't have a setup file or collectConfiguration method
+              console.warn(chalk.yellow(`Warning: Could not load configuration for ${ide}`));
+            }
+          }
+        }
+      }
+
+      // Log which IDEs are already configured and being kept
+      const keptIdes = toolConfig.ides.filter((ide) => previouslyConfiguredIdes.includes(ide));
+      if (keptIdes.length > 0) {
+        console.log(chalk.dim(`\nKeeping existing configuration for: ${keptIdes.join(', ')}`));
+      }
+    }
+
+    return {
+      ides: toolConfig.ides,
+      skipIde: toolConfig.skipIde,
+      configurations: ideConfigurations,
+    };
+  }
+
+  /**
+   * Main installation method
+   * @param {Object} config - Installation configuration
+   * @param {string} config.directory - Target directory
+   * @param {boolean} config.installCore - Whether to install core
+   * @param {string[]} config.modules - Modules to install
+   * @param {string[]} config.ides - IDEs to configure
+   * @param {boolean} config.skipIde - Skip IDE configuration
+   */
+  async install(config) {
+    // Display XIAOMA logo
+    CLIUtils.displayLogo();
+
+    // Display welcome message
+    CLIUtils.displaySection('XIAOMA™ Installation', 'Version ' + require(path.join(getProjectRoot(), 'package.json')).version);
+
+    // Note: Legacy V4 detection now happens earlier in UI.promptInstall()
+    // before any config collection, so we don't need to check again here
+
+    const projectDir = path.resolve(config.directory);
+
+    // If core config was pre-collected (from interactive mode), use it
+    if (config.coreConfig) {
+      this.configCollector.collectedConfig.core = config.coreConfig;
+      // Also store in allAnswers for cross-referencing
+      this.configCollector.allAnswers = {};
+      for (const [key, value] of Object.entries(config.coreConfig)) {
+        this.configCollector.allAnswers[`core_${key}`] = value;
+      }
+    }
+
+    // Collect configurations for modules (skip if quick update already collected them)
+    let moduleConfigs;
+    if (config._quickUpdate) {
+      // Quick update already collected all configs, use them directly
+      moduleConfigs = this.configCollector.collectedConfig;
+    } else {
+      // Regular install - collect configurations (core was already collected in UI.promptInstall if interactive)
+      moduleConfigs = await this.configCollector.collectAllConfigurations(config.modules || [], path.resolve(config.directory));
+    }
+
+    // Get xiaoma_folder from config (default to 'xiaoma' for backwards compatibility)
+    const xiaomaFolderName = moduleConfigs.core && moduleConfigs.core.xiaoma_folder ? moduleConfigs.core.xiaoma_folder : 'xiaoma';
+    this.xiaomaFolderName = xiaomaFolderName; // Store for use in other methods
+
+    // Store AgentVibes configuration for injection point processing
+    this.enableAgentVibes = config.enableAgentVibes || false;
+
+    // Set xiaoma folder name on module manager and IDE manager for placeholder replacement
+    this.moduleManager.setBmadFolderName(xiaomaFolderName);
+    this.ideManager.setBmadFolderName(xiaomaFolderName);
+
+    // Tool selection will be collected after we determine if it's a reinstall/update/new install
+
+    const spinner = ora('Preparing installation...').start();
+
+    try {
+      // Resolve target directory (path.resolve handles platform differences)
+      const projectDir = path.resolve(config.directory);
+
+      // Check if xiaoma_folder has changed from existing installation (only if project dir exists)
+      let existingBmadDir = null;
+      let existingBmadFolderName = null;
+
+      if (await fs.pathExists(projectDir)) {
+        existingBmadDir = await this.findBmadDir(projectDir);
+        existingBmadFolderName = path.basename(existingBmadDir);
+      }
+
+      const targetBmadDir = path.join(projectDir, xiaomaFolderName);
+
+      // If xiaoma_folder changed during update/upgrade, back up old folder and do fresh install
+      if (existingBmadDir && (await fs.pathExists(existingBmadDir)) && existingBmadFolderName !== xiaomaFolderName) {
+        spinner.stop();
+        console.log(chalk.yellow(`\n⚠️  xiaoma_folder has changed: ${existingBmadFolderName} → ${xiaomaFolderName}`));
+        console.log(chalk.yellow('This will result in a fresh installation to the new folder.'));
+
+        const inquirer = require('inquirer');
+        const { confirmFreshInstall } = await inquirer.prompt([
+          {
+            type: 'confirm',
+            name: 'confirmFreshInstall',
+            message: chalk.cyan('Proceed with fresh install? (Your old folder will be backed up)'),
+            default: true,
+          },
+        ]);
+
+        if (!confirmFreshInstall) {
+          console.log(chalk.yellow('Installation cancelled.'));
+          return { success: false, cancelled: true };
+        }
+
+        spinner.start('Backing up existing installation...');
+
+        // Find a unique backup name
+        let backupDir = `${existingBmadDir}-bak`;
+        let counter = 1;
+        while (await fs.pathExists(backupDir)) {
+          backupDir = `${existingBmadDir}-bak-${counter}`;
+          counter++;
+        }
+
+        // Rename the old folder to backup
+        await fs.move(existingBmadDir, backupDir);
+
+        spinner.succeed(`Backed up ${existingBmadFolderName} → ${path.basename(backupDir)}`);
+        console.log(chalk.cyan('\n📋 Important:'));
+        console.log(chalk.dim(`  - Your old installation has been backed up to: ${path.basename(backupDir)}`));
+        console.log(chalk.dim(`  - If you had custom agents or configurations, copy them from:`));
+        console.log(chalk.dim(`    ${path.basename(backupDir)}/_cfg/`));
+        console.log(chalk.dim(`  - To the new location:`));
+        console.log(chalk.dim(`    ${xiaomaFolderName}/_cfg/`));
+        console.log('');
+
+        spinner.start('Starting fresh installation...');
+      }
+
+      // Create a project directory if it doesn't exist (user already confirmed)
+      if (!(await fs.pathExists(projectDir))) {
+        spinner.text = 'Creating installation directory...';
+        try {
+          // fs.ensureDir handles platform-specific directory creation
+          // It will recursively create all necessary parent directories
+          await fs.ensureDir(projectDir);
+        } catch (error) {
+          spinner.fail('Failed to create installation directory');
+          console.error(chalk.red(`Error: ${error.message}`));
+          // More detailed error for common issues
+          if (error.code === 'EACCES') {
+            console.error(chalk.red('Permission denied. Check parent directory permissions.'));
+          } else if (error.code === 'ENOSPC') {
+            console.error(chalk.red('No space left on device.'));
+          }
+          throw new Error(`Cannot create directory: ${projectDir}`);
+        }
+      }
+
+      const xiaomaDir = path.join(projectDir, xiaomaFolderName);
+
+      // Check existing installation
+      spinner.text = 'Checking for existing installation...';
+      const existingInstall = await this.detector.detect(xiaomaDir);
+
+      if (existingInstall.installed && !config.force && !config._quickUpdate) {
+        spinner.stop();
+
+        // Check if user already decided what to do (from early menu in ui.js)
+        let action = null;
+        if (config._requestedReinstall) {
+          action = 'reinstall';
+        } else if (config.actionType === 'update') {
+          action = 'update';
+        } else {
+          // Fallback: Ask the user (backwards compatibility for other code paths)
+          console.log(chalk.yellow('\n⚠️  Existing XIAOMA installation detected'));
+          console.log(chalk.dim(`  Location: ${xiaomaDir}`));
+          console.log(chalk.dim(`  Version: ${existingInstall.version}`));
+
+          const promptResult = await this.promptUpdateAction();
+          action = promptResult.action;
+        }
+
+        if (action === 'cancel') {
+          console.log('Installation cancelled.');
+          return { success: false, cancelled: true };
+        }
+
+        if (action === 'reinstall') {
+          // Warn about destructive operation
+          console.log(chalk.red.bold('\n⚠️  WARNING: This is a destructive operation!'));
+          console.log(chalk.red('All custom files and modifications in the xiaoma directory will be lost.'));
+
+          const inquirer = require('inquirer');
+          const { confirmReinstall } = await inquirer.prompt([
+            {
+              type: 'confirm',
+              name: 'confirmReinstall',
+              message: chalk.yellow('Are you sure you want to delete and reinstall?'),
+              default: false,
+            },
+          ]);
+
+          if (!confirmReinstall) {
+            console.log('Installation cancelled.');
+            return { success: false, cancelled: true };
+          }
+
+          // Remember previously configured IDEs before deleting
+          config._previouslyConfiguredIdes = existingInstall.ides || [];
+
+          // Remove existing installation
+          await fs.remove(xiaomaDir);
+          console.log(chalk.green('✓ Removed existing installation\n'));
+
+          // Mark this as a full reinstall so we re-collect IDE configurations
+          config._isFullReinstall = true;
+        } else if (action === 'update') {
+          // Store that we're updating for later processing
+          config._isUpdate = true;
+          config._existingInstall = existingInstall;
+
+          // Detect custom and modified files BEFORE updating (compare current files vs files-manifest.csv)
+          const existingFilesManifest = await this.readFilesManifest(xiaomaDir);
+          console.log(chalk.dim(`DEBUG: Read ${existingFilesManifest.length} files from manifest`));
+          console.log(chalk.dim(`DEBUG: Manifest has hashes: ${existingFilesManifest.some((f) => f.hash)}`));
+
+          const { customFiles, modifiedFiles } = await this.detectCustomFiles(xiaomaDir, existingFilesManifest);
+
+          console.log(chalk.dim(`DEBUG: Found ${customFiles.length} custom files, ${modifiedFiles.length} modified files`));
+          if (modifiedFiles.length > 0) {
+            console.log(chalk.yellow('DEBUG: Modified files:'));
+            for (const f of modifiedFiles) console.log(chalk.dim(`  - ${f.path}`));
+          }
+
+          config._customFiles = customFiles;
+          config._modifiedFiles = modifiedFiles;
+
+          // If there are custom files, back them up temporarily
+          if (customFiles.length > 0) {
+            const tempBackupDir = path.join(projectDir, '.xiaoma-custom-backup-temp');
+            await fs.ensureDir(tempBackupDir);
+
+            spinner.start(`Backing up ${customFiles.length} custom files...`);
+            for (const customFile of customFiles) {
+              const relativePath = path.relative(xiaomaDir, customFile);
+              const backupPath = path.join(tempBackupDir, relativePath);
+              await fs.ensureDir(path.dirname(backupPath));
+              await fs.copy(customFile, backupPath);
+            }
+            spinner.succeed(`Backed up ${customFiles.length} custom files`);
+
+            config._tempBackupDir = tempBackupDir;
+          }
+
+          // For modified files, back them up to temp directory (will be restored as .bak files after install)
+          if (modifiedFiles.length > 0) {
+            const tempModifiedBackupDir = path.join(projectDir, '.xiaoma-modified-backup-temp');
+            await fs.ensureDir(tempModifiedBackupDir);
+
+            console.log(chalk.yellow(`\nDEBUG: Backing up ${modifiedFiles.length} modified files to temp location`));
+            spinner.start(`Backing up ${modifiedFiles.length} modified files...`);
+            for (const modifiedFile of modifiedFiles) {
+              const relativePath = path.relative(xiaomaDir, modifiedFile.path);
+              const tempBackupPath = path.join(tempModifiedBackupDir, relativePath);
+              console.log(chalk.dim(`DEBUG: Backing up ${relativePath} to temp`));
+              await fs.ensureDir(path.dirname(tempBackupPath));
+              await fs.copy(modifiedFile.path, tempBackupPath, { overwrite: true });
+            }
+            spinner.succeed(`Backed up ${modifiedFiles.length} modified files`);
+
+            config._tempModifiedBackupDir = tempModifiedBackupDir;
+          } else {
+            console.log(chalk.dim('DEBUG: No modified files detected'));
+          }
+        }
+      } else if (existingInstall.installed && config._quickUpdate) {
+        // Quick update mode - automatically treat as update without prompting
+        spinner.text = 'Preparing quick update...';
+        config._isUpdate = true;
+        config._existingInstall = existingInstall;
+
+        // Detect custom and modified files BEFORE updating
+        const existingFilesManifest = await this.readFilesManifest(xiaomaDir);
+        const { customFiles, modifiedFiles } = await this.detectCustomFiles(xiaomaDir, existingFilesManifest);
+
+        config._customFiles = customFiles;
+        config._modifiedFiles = modifiedFiles;
+
+        // Back up custom files
+        if (customFiles.length > 0) {
+          const tempBackupDir = path.join(projectDir, '.xiaoma-custom-backup-temp');
+          await fs.ensureDir(tempBackupDir);
+
+          spinner.start(`Backing up ${customFiles.length} custom files...`);
+          for (const customFile of customFiles) {
+            const relativePath = path.relative(xiaomaDir, customFile);
+            const backupPath = path.join(tempBackupDir, relativePath);
+            await fs.ensureDir(path.dirname(backupPath));
+            await fs.copy(customFile, backupPath);
+          }
+          spinner.succeed(`Backed up ${customFiles.length} custom files`);
+          config._tempBackupDir = tempBackupDir;
+        }
+
+        // Back up modified files
+        if (modifiedFiles.length > 0) {
+          const tempModifiedBackupDir = path.join(projectDir, '.xiaoma-modified-backup-temp');
+          await fs.ensureDir(tempModifiedBackupDir);
+
+          spinner.start(`Backing up ${modifiedFiles.length} modified files...`);
+          for (const modifiedFile of modifiedFiles) {
+            const relativePath = path.relative(xiaomaDir, modifiedFile.path);
+            const tempBackupPath = path.join(tempModifiedBackupDir, relativePath);
+            await fs.ensureDir(path.dirname(tempBackupPath));
+            await fs.copy(modifiedFile.path, tempBackupPath, { overwrite: true });
+          }
+          spinner.succeed(`Backed up ${modifiedFiles.length} modified files`);
+          config._tempModifiedBackupDir = tempModifiedBackupDir;
+        }
+      }
+
+      // Now collect tool configurations after we know if it's a reinstall
+      // Skip for quick update since we already have the IDE list
+      spinner.stop();
+      let toolSelection;
+      if (config._quickUpdate) {
+        // Quick update already has IDEs configured, use saved configurations
+        const preConfiguredIdes = {};
+        const savedIdeConfigs = config._savedIdeConfigs || {};
+
+        for (const ide of config.ides || []) {
+          // Use saved config if available, otherwise mark as already configured (legacy)
+          if (savedIdeConfigs[ide]) {
+            preConfiguredIdes[ide] = savedIdeConfigs[ide];
+          } else {
+            preConfiguredIdes[ide] = { _alreadyConfigured: true };
+          }
+        }
+        toolSelection = {
+          ides: config.ides || [],
+          skipIde: !config.ides || config.ides.length === 0,
+          configurations: preConfiguredIdes,
+        };
+      } else {
+        // Pass pre-selected IDEs from early prompt (if available)
+        // This allows IDE selection to happen before file copying, improving UX
+        const preSelectedIdes = config.ides && config.ides.length > 0 ? config.ides : null;
+        toolSelection = await this.collectToolConfigurations(
+          path.resolve(config.directory),
+          config.modules,
+          config._isFullReinstall || false,
+          config._previouslyConfiguredIdes || [],
+          preSelectedIdes,
+        );
+      }
+
+      // Merge tool selection into config (for both quick update and regular flow)
+      config.ides = toolSelection.ides;
+      config.skipIde = toolSelection.skipIde;
+      const ideConfigurations = toolSelection.configurations;
+
+      // Check if spinner is already running (e.g., from folder name change scenario)
+      if (spinner.isSpinning) {
+        spinner.text = 'Continuing installation...';
+      } else {
+        spinner.start('Continuing installation...');
+      }
+
+      // Create xiaoma directory structure
+      spinner.text = 'Creating directory structure...';
+      await this.createDirectoryStructure(xiaomaDir);
+
+      // Resolve dependencies for selected modules
+      spinner.text = 'Resolving dependencies...';
+      const projectRoot = getProjectRoot();
+      const modulesToInstall = config.installCore ? ['core', ...config.modules] : config.modules;
+
+      // For dependency resolution, we need to pass the project root
+      const resolution = await this.dependencyResolver.resolve(projectRoot, config.modules || [], { verbose: config.verbose });
+
+      if (config.verbose) {
+        spinner.succeed('Dependencies resolved');
+      } else {
+        spinner.succeed('Dependencies resolved');
+      }
+
+      // Install core if requested or if dependencies require it
+      if (config.installCore || resolution.byModule.core) {
+        spinner.start('Installing XIAOMA core...');
+        await this.installCoreWithDependencies(xiaomaDir, resolution.byModule.core);
+        spinner.succeed('Core installed');
+      }
+
+      // Install modules with their dependencies
+      if (config.modules && config.modules.length > 0) {
+        for (const moduleName of config.modules) {
+          spinner.start(`Installing module: ${moduleName}...`);
+          await this.installModuleWithDependencies(moduleName, xiaomaDir, resolution.byModule[moduleName]);
+          spinner.succeed(`Module installed: ${moduleName}`);
+        }
+
+        // Install partial modules (only dependencies)
+        for (const [module, files] of Object.entries(resolution.byModule)) {
+          if (!config.modules.includes(module) && module !== 'core') {
+            const totalFiles =
+              files.agents.length +
+              files.tasks.length +
+              files.tools.length +
+              files.templates.length +
+              files.data.length +
+              files.other.length;
+            if (totalFiles > 0) {
+              spinner.start(`Installing ${module} dependencies...`);
+              await this.installPartialModule(module, xiaomaDir, files);
+              spinner.succeed(`${module} dependencies installed`);
+            }
+          }
+        }
+      }
+
+      // Generate clean config.yaml files for each installed module
+      spinner.start('Generating module configurations...');
+      await this.generateModuleConfigs(xiaomaDir, moduleConfigs);
+      spinner.succeed('Module configurations generated');
+
+      // Create agent configuration files
+      // Note: Legacy createAgentConfigs removed - using YAML customize system instead
+      // Customize templates are now created in processAgentFiles when building YAML agents
+
+      // Pre-register manifest files that will be created (except files-manifest.csv to avoid recursion)
+      const cfgDir = path.join(xiaomaDir, '_cfg');
+      this.installedFiles.push(
+        path.join(cfgDir, 'manifest.yaml'),
+        path.join(cfgDir, 'workflow-manifest.csv'),
+        path.join(cfgDir, 'agent-manifest.csv'),
+        path.join(cfgDir, 'task-manifest.csv'),
+      );
+
+      // Generate CSV manifests for workflows, agents, tasks AND ALL FILES with hashes BEFORE IDE setup
+      spinner.start('Generating workflow and agent manifests...');
+      const manifestGen = new ManifestGenerator();
+
+      // Include preserved modules (from quick update) in the manifest
+      const allModulesToList = config._preserveModules ? [...(config.modules || []), ...config._preserveModules] : config.modules || [];
+
+      const manifestStats = await manifestGen.generateManifests(xiaomaDir, config.modules || [], this.installedFiles, {
+        ides: config.ides || [],
+        preservedModules: config._preserveModules || [], // Scan these from installed xiaoma/ dir
+      });
+
+      spinner.succeed(
+        `Manifests generated: ${manifestStats.workflows} workflows, ${manifestStats.agents} agents, ${manifestStats.tasks} tasks, ${manifestStats.tools} tools, ${manifestStats.files} files`,
+      );
+
+      // Configure IDEs and copy documentation
+      if (!config.skipIde && config.ides && config.ides.length > 0) {
+        // Filter out any undefined/null values from the IDE list
+        const validIdes = config.ides.filter((ide) => ide && typeof ide === 'string');
+
+        if (validIdes.length === 0) {
+          console.log(chalk.yellow('⚠️  No valid IDEs selected. Skipping IDE configuration.'));
+        } else {
+          // Check if any IDE might need prompting (no pre-collected config)
+          const needsPrompting = validIdes.some((ide) => !ideConfigurations[ide]);
+
+          if (!needsPrompting) {
+            spinner.start('Configuring IDEs...');
+          }
+
+          // Temporarily suppress console output if not verbose
+          const originalLog = console.log;
+          if (!config.verbose) {
+            console.log = () => {};
+          }
+
+          for (const ide of validIdes) {
+            // Only show spinner if we have pre-collected config (no prompts expected)
+            if (ideConfigurations[ide] && !needsPrompting) {
+              spinner.text = `Configuring ${ide}...`;
+            } else if (!ideConfigurations[ide]) {
+              // Stop spinner before prompting
+              if (spinner.isSpinning) {
+                spinner.stop();
+              }
+              console.log(chalk.cyan(`\nConfiguring ${ide}...`));
+            }
+
+            // Pass pre-collected configuration to avoid re-prompting
+            await this.ideManager.setup(ide, projectDir, xiaomaDir, {
+              selectedModules: config.modules || [],
+              preCollectedConfig: ideConfigurations[ide] || null,
+              verbose: config.verbose,
+            });
+
+            // Save IDE configuration for future updates
+            if (ideConfigurations[ide] && !ideConfigurations[ide]._alreadyConfigured) {
+              await this.ideConfigManager.saveIdeConfig(xiaomaDir, ide, ideConfigurations[ide]);
+            }
+
+            // Restart spinner if we stopped it
+            if (!ideConfigurations[ide] && !spinner.isSpinning) {
+              spinner.start('Configuring IDEs...');
+            }
+          }
+
+          // Restore console.log
+          console.log = originalLog;
+
+          if (spinner.isSpinning) {
+            spinner.succeed(`Configured ${validIdes.length} IDE${validIdes.length > 1 ? 's' : ''}`);
+          } else {
+            console.log(chalk.green(`✓ Configured ${validIdes.length} IDE${validIdes.length > 1 ? 's' : ''}`));
+          }
+        }
+
+        // Copy IDE-specific documentation (only for valid IDEs)
+        const validIdesForDocs = (config.ides || []).filter((ide) => ide && typeof ide === 'string');
+        if (validIdesForDocs.length > 0) {
+          spinner.start('Copying IDE documentation...');
+          await this.copyIdeDocumentation(validIdesForDocs, xiaomaDir);
+          spinner.succeed('IDE documentation copied');
+        }
+      }
+
+      // Run module-specific installers after IDE setup
+      spinner.start('Running module-specific installers...');
+
+      // Run core module installer if core was installed
+      if (config.installCore || resolution.byModule.core) {
+        spinner.text = 'Running core module installer...';
+
+        await this.moduleManager.runModuleInstaller('core', xiaomaDir, {
+          installedIDEs: config.ides || [],
+          moduleConfig: moduleConfigs.core || {},
+          logger: {
+            log: (msg) => console.log(msg),
+            error: (msg) => console.error(msg),
+            warn: (msg) => console.warn(msg),
+          },
+        });
+      }
+
+      // Run installers for user-selected modules
+      if (config.modules && config.modules.length > 0) {
+        for (const moduleName of config.modules) {
+          spinner.text = `Running ${moduleName} module installer...`;
+
+          // Pass installed IDEs and module config to module installer
+          await this.moduleManager.runModuleInstaller(moduleName, xiaomaDir, {
+            installedIDEs: config.ides || [],
+            moduleConfig: moduleConfigs[moduleName] || {},
+            logger: {
+              log: (msg) => console.log(msg),
+              error: (msg) => console.error(msg),
+              warn: (msg) => console.warn(msg),
+            },
+          });
+        }
+      }
+
+      spinner.succeed('Module-specific installers completed');
+
+      // Note: Manifest files are already created by ManifestGenerator above
+      // No need to create legacy manifest.csv anymore
+
+      // If this was an update, restore custom files
+      let customFiles = [];
+      let modifiedFiles = [];
+      if (config._isUpdate) {
+        if (config._customFiles && config._customFiles.length > 0) {
+          spinner.start(`Restoring ${config._customFiles.length} custom files...`);
+
+          for (const originalPath of config._customFiles) {
+            const relativePath = path.relative(xiaomaDir, originalPath);
+            const backupPath = path.join(config._tempBackupDir, relativePath);
+
+            if (await fs.pathExists(backupPath)) {
+              await fs.ensureDir(path.dirname(originalPath));
+              await fs.copy(backupPath, originalPath, { overwrite: true });
+            }
+          }
+
+          // Clean up temp backup
+          if (config._tempBackupDir && (await fs.pathExists(config._tempBackupDir))) {
+            await fs.remove(config._tempBackupDir);
+          }
+
+          spinner.succeed(`Restored ${config._customFiles.length} custom files`);
+          customFiles = config._customFiles;
+        }
+
+        if (config._modifiedFiles && config._modifiedFiles.length > 0) {
+          modifiedFiles = config._modifiedFiles;
+
+          // Restore modified files as .bak files
+          if (config._tempModifiedBackupDir && (await fs.pathExists(config._tempModifiedBackupDir))) {
+            spinner.start(`Restoring ${modifiedFiles.length} modified files as .bak...`);
+
+            for (const modifiedFile of modifiedFiles) {
+              const relativePath = path.relative(xiaomaDir, modifiedFile.path);
+              const tempBackupPath = path.join(config._tempModifiedBackupDir, relativePath);
+              const bakPath = modifiedFile.path + '.bak';
+
+              if (await fs.pathExists(tempBackupPath)) {
+                await fs.ensureDir(path.dirname(bakPath));
+                await fs.copy(tempBackupPath, bakPath, { overwrite: true });
+              }
+            }
+
+            // Clean up temp backup
+            await fs.remove(config._tempModifiedBackupDir);
+
+            spinner.succeed(`Restored ${modifiedFiles.length} modified files as .bak`);
+          }
+        }
+      }
+
+      spinner.stop();
+
+      // Report custom and modified files if any were found
+      if (customFiles.length > 0) {
+        console.log(chalk.cyan(`\n📁 Custom files preserved: ${customFiles.length}`));
+        console.log(chalk.dim('The following custom files were found and restored:\n'));
+        for (const file of customFiles) {
+          console.log(chalk.dim(`  - ${path.relative(xiaomaDir, file)}`));
+        }
+        console.log('');
+      }
+
+      if (modifiedFiles.length > 0) {
+        console.log(chalk.yellow(`\n⚠️  Modified files detected: ${modifiedFiles.length}`));
+        console.log(chalk.dim('The following files were modified and backed up with .bak extension:\n'));
+        for (const file of modifiedFiles) {
+          console.log(chalk.dim(`  - ${file.relativePath} → ${file.relativePath}.bak`));
+        }
+        console.log(chalk.dim('\nThese files have been updated with the new version.'));
+        console.log(chalk.dim('Review the .bak files to see your changes and merge if needed.\n'));
+      }
+
+      // Reinstall custom agents from _cfg/custom/agents/ sources
+      const customAgentResults = await this.reinstallCustomAgents(projectDir, xiaomaDir);
+      if (customAgentResults.count > 0) {
+        console.log(chalk.green(`\n✓ Reinstalled ${customAgentResults.count} custom agent${customAgentResults.count > 1 ? 's' : ''}`));
+        for (const agent of customAgentResults.agents) {
+          console.log(chalk.dim(`  - ${agent}`));
+        }
+      }
+
+      // Display completion message
+      const { UI } = require('../../../lib/ui');
+      const ui = new UI();
+      ui.showInstallSummary({
+        path: xiaomaDir,
+        modules: config.modules,
+        ides: config.ides,
+        customFiles: customFiles.length > 0 ? customFiles : undefined,
+      });
+
+      // Offer cleanup for legacy files (only for updates, not fresh installs, and only if not skipped)
+      if (!config.skipCleanup && config._isUpdate) {
+        try {
+          const cleanupResult = await this.performCleanup(xiaomaDir, false);
+          if (cleanupResult.deleted > 0) {
+            console.log(chalk.green(`\n✓ Cleaned up ${cleanupResult.deleted} legacy file${cleanupResult.deleted > 1 ? 's' : ''}`));
+          }
+          if (cleanupResult.retained > 0) {
+            console.log(chalk.dim(`Run 'xiaoma cleanup' anytime to manage retained files`));
+          }
+        } catch (cleanupError) {
+          // Don't fail the installation for cleanup errors
+          console.log(chalk.yellow(`\n⚠️  Cleanup warning: ${cleanupError.message}`));
+          console.log(chalk.dim('Run "xiaoma cleanup" to manually clean up legacy files'));
+        }
+      }
+
+      return {
+        success: true,
+        path: xiaomaDir,
+        modules: config.modules,
+        ides: config.ides,
+        needsAgentVibes: this.enableAgentVibes && !config.agentVibesInstalled,
+        projectDir: projectDir,
+      };
+    } catch (error) {
+      spinner.fail('Installation failed');
+      throw error;
+    }
+  }
+
+  /**
+   * Update existing installation
+   */
+  async update(config) {
+    const spinner = ora('Checking installation...').start();
+
+    try {
+      const projectDir = path.resolve(config.directory);
+      const xiaomaDir = await this.findBmadDir(projectDir);
+      const existingInstall = await this.detector.detect(xiaomaDir);
+
+      if (!existingInstall.installed) {
+        spinner.fail('No XIAOMA installation found');
+        throw new Error(`No XIAOMA installation found at ${xiaomaDir}`);
+      }
+
+      spinner.text = 'Analyzing update requirements...';
+
+      // Compare versions and determine what needs updating
+      const currentVersion = existingInstall.version;
+      const newVersion = require(path.join(getProjectRoot(), 'package.json')).version;
+
+      if (config.dryRun) {
+        spinner.stop();
+        console.log(chalk.cyan('\n🔍 Update Preview (Dry Run)\n'));
+        console.log(chalk.bold('Current version:'), currentVersion);
+        console.log(chalk.bold('New version:'), newVersion);
+        console.log(chalk.bold('Core:'), existingInstall.hasCore ? 'Will be updated' : 'Not installed');
+
+        if (existingInstall.modules.length > 0) {
+          console.log(chalk.bold('\nModules to update:'));
+          for (const mod of existingInstall.modules) {
+            console.log(`  - ${mod.id}`);
+          }
+        }
+        return;
+      }
+
+      // Perform actual update
+      if (existingInstall.hasCore) {
+        spinner.text = 'Updating core...';
+        await this.updateCore(xiaomaDir, config.force);
+      }
+
+      for (const module of existingInstall.modules) {
+        spinner.text = `Updating module: ${module.id}...`;
+        await this.moduleManager.update(module.id, xiaomaDir, config.force);
+      }
+
+      // Update manifest
+      spinner.text = 'Updating manifest...';
+      await this.manifest.update(xiaomaDir, {
+        version: newVersion,
+        updateDate: new Date().toISOString(),
+      });
+
+      spinner.succeed('Update complete');
+      return { success: true };
+    } catch (error) {
+      spinner.fail('Update failed');
+      throw error;
+    }
+  }
+
+  /**
+   * Get installation status
+   */
+  async getStatus(directory) {
+    const projectDir = path.resolve(directory);
+    const xiaomaDir = await this.findBmadDir(projectDir);
+    return await this.detector.detect(xiaomaDir);
+  }
+
+  /**
+   * Get available modules
+   */
+  async getAvailableModules() {
+    return await this.moduleManager.listAvailable();
+  }
+
+  /**
+   * Uninstall XIAOMA
+   */
+  async uninstall(directory) {
+    const projectDir = path.resolve(directory);
+    const xiaomaDir = await this.findBmadDir(projectDir);
+
+    if (await fs.pathExists(xiaomaDir)) {
+      await fs.remove(xiaomaDir);
+    }
+
+    // Clean up IDE configurations
+    await this.ideManager.cleanup(projectDir);
+
+    return { success: true };
+  }
+
+  /**
+   * Private: Create directory structure
+   */
+  async createDirectoryStructure(xiaomaDir) {
+    await fs.ensureDir(xiaomaDir);
+    await fs.ensureDir(path.join(xiaomaDir, '_cfg'));
+    await fs.ensureDir(path.join(xiaomaDir, '_cfg', 'agents'));
+  }
+
+  /**
+   * Generate clean config.yaml files for each installed module
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {Object} moduleConfigs - Collected configuration values
+   */
+  async generateModuleConfigs(xiaomaDir, moduleConfigs) {
+    const yaml = require('js-yaml');
+
+    // Extract core config values to share with other modules
+    const coreConfig = moduleConfigs.core || {};
+
+    // Get all installed module directories
+    const entries = await fs.readdir(xiaomaDir, { withFileTypes: true });
+    const installedModules = entries
+      .filter((entry) => entry.isDirectory() && entry.name !== '_cfg' && entry.name !== 'docs')
+      .map((entry) => entry.name);
+
+    // Generate config.yaml for each installed module
+    for (const moduleName of installedModules) {
+      const modulePath = path.join(xiaomaDir, moduleName);
+
+      // Get module-specific config or use empty object if none
+      const config = moduleConfigs[moduleName] || {};
+
+      if (await fs.pathExists(modulePath)) {
+        const configPath = path.join(modulePath, 'config.yaml');
+
+        // Create header
+        const packageJson = require(path.join(getProjectRoot(), 'package.json'));
+        const header = `# ${moduleName.toUpperCase()} Module Configuration
+# Generated by XIAOMA installer
+# Version: ${packageJson.version}
+# Date: ${new Date().toISOString()}
+
+`;
+
+        // For non-core modules, add core config values directly
+        let finalConfig = { ...config };
+        let coreSection = '';
+
+        if (moduleName !== 'core' && coreConfig && Object.keys(coreConfig).length > 0) {
+          // Add core values directly to the module config
+          // These will be available for reference in the module
+          finalConfig = {
+            ...config,
+            ...coreConfig, // Spread core config values directly into the module config
+          };
+
+          // Create a comment section to identify core values
+          coreSection = '\n# Core Configuration Values\n';
+        }
+
+        // Convert config to YAML
+        let yamlContent = yaml.dump(finalConfig, {
+          indent: 2,
+          lineWidth: -1,
+          noRefs: true,
+          sortKeys: false,
+        });
+
+        // If we have core values, reorganize the YAML to group them with their comment
+        if (coreSection && moduleName !== 'core') {
+          // Split the YAML into lines
+          const lines = yamlContent.split('\n');
+          const moduleConfigLines = [];
+          const coreConfigLines = [];
+
+          // Separate module-specific and core config lines
+          for (const line of lines) {
+            const key = line.split(':')[0].trim();
+            if (Object.prototype.hasOwnProperty.call(coreConfig, key)) {
+              coreConfigLines.push(line);
+            } else {
+              moduleConfigLines.push(line);
+            }
+          }
+
+          // Rebuild YAML with module config first, then core config with comment
+          yamlContent = moduleConfigLines.join('\n');
+          if (coreConfigLines.length > 0) {
+            yamlContent += coreSection + coreConfigLines.join('\n');
+          }
+        }
+
+        // Write the clean config file with POSIX-compliant final newline
+        const content = header + yamlContent;
+        await fs.writeFile(configPath, content.endsWith('\n') ? content : content + '\n', 'utf8');
+
+        // Track the config file in installedFiles
+        this.installedFiles.push(configPath);
+      }
+    }
+  }
+
+  /**
+   * Install core with resolved dependencies
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {Object} coreFiles - Core files to install
+   */
+  async installCoreWithDependencies(xiaomaDir, coreFiles) {
+    const sourcePath = getModulePath('core');
+    const targetPath = path.join(xiaomaDir, 'core');
+
+    // Install full core
+    await this.installCore(xiaomaDir);
+
+    // If there are specific dependency files, ensure they're included
+    if (coreFiles) {
+      // Already handled by installCore for core module
+    }
+  }
+
+  /**
+   * Install module with resolved dependencies
+   * @param {string} moduleName - Module name
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {Object} moduleFiles - Module files to install
+   */
+  async installModuleWithDependencies(moduleName, xiaomaDir, moduleFiles) {
+    // Get module configuration for conditional installation
+    const moduleConfig = this.configCollector.collectedConfig[moduleName] || {};
+
+    // Use existing module manager for full installation with file tracking
+    // Note: Module-specific installers are called separately after IDE setup
+    await this.moduleManager.install(
+      moduleName,
+      xiaomaDir,
+      (filePath) => {
+        this.installedFiles.push(filePath);
+      },
+      {
+        skipModuleInstaller: true, // We'll run it later after IDE setup
+        moduleConfig: moduleConfig, // Pass module config for conditional filtering
+      },
+    );
+
+    // Process agent files to build YAML agents and create customize templates
+    const modulePath = path.join(xiaomaDir, moduleName);
+    await this.processAgentFiles(modulePath, moduleName);
+
+    // Dependencies are already included in full module install
+  }
+
+  /**
+   * Install partial module (only dependencies needed by other modules)
+   */
+  async installPartialModule(moduleName, xiaomaDir, files) {
+    const sourceBase = getModulePath(moduleName);
+    const targetBase = path.join(xiaomaDir, moduleName);
+
+    // Create module directory
+    await fs.ensureDir(targetBase);
+
+    // Copy only the required dependency files
+    if (files.agents && files.agents.length > 0) {
+      const agentsDir = path.join(targetBase, 'agents');
+      await fs.ensureDir(agentsDir);
+
+      for (const agentPath of files.agents) {
+        const fileName = path.basename(agentPath);
+        const sourcePath = path.join(sourceBase, 'agents', fileName);
+        const targetPath = path.join(agentsDir, fileName);
+
+        if (await fs.pathExists(sourcePath)) {
+          await this.copyFileWithPlaceholderReplacement(sourcePath, targetPath, this.xiaomaFolderName || 'xiaoma');
+          this.installedFiles.push(targetPath);
+        }
+      }
+    }
+
+    if (files.tasks && files.tasks.length > 0) {
+      const tasksDir = path.join(targetBase, 'tasks');
+      await fs.ensureDir(tasksDir);
+
+      for (const taskPath of files.tasks) {
+        const fileName = path.basename(taskPath);
+        const sourcePath = path.join(sourceBase, 'tasks', fileName);
+        const targetPath = path.join(tasksDir, fileName);
+
+        if (await fs.pathExists(sourcePath)) {
+          await this.copyFileWithPlaceholderReplacement(sourcePath, targetPath, this.xiaomaFolderName || 'xiaoma');
+          this.installedFiles.push(targetPath);
+        }
+      }
+    }
+
+    if (files.tools && files.tools.length > 0) {
+      const toolsDir = path.join(targetBase, 'tools');
+      await fs.ensureDir(toolsDir);
+
+      for (const toolPath of files.tools) {
+        const fileName = path.basename(toolPath);
+        const sourcePath = path.join(sourceBase, 'tools', fileName);
+        const targetPath = path.join(toolsDir, fileName);
+
+        if (await fs.pathExists(sourcePath)) {
+          await this.copyFileWithPlaceholderReplacement(sourcePath, targetPath, this.xiaomaFolderName || 'xiaoma');
+          this.installedFiles.push(targetPath);
+        }
+      }
+    }
+
+    if (files.templates && files.templates.length > 0) {
+      const templatesDir = path.join(targetBase, 'templates');
+      await fs.ensureDir(templatesDir);
+
+      for (const templatePath of files.templates) {
+        const fileName = path.basename(templatePath);
+        const sourcePath = path.join(sourceBase, 'templates', fileName);
+        const targetPath = path.join(templatesDir, fileName);
+
+        if (await fs.pathExists(sourcePath)) {
+          await this.copyFileWithPlaceholderReplacement(sourcePath, targetPath, this.xiaomaFolderName || 'xiaoma');
+          this.installedFiles.push(targetPath);
+        }
+      }
+    }
+
+    if (files.data && files.data.length > 0) {
+      for (const dataPath of files.data) {
+        // Preserve directory structure for data files
+        const relative = path.relative(sourceBase, dataPath);
+        const targetPath = path.join(targetBase, relative);
+
+        await fs.ensureDir(path.dirname(targetPath));
+
+        if (await fs.pathExists(dataPath)) {
+          await this.copyFileWithPlaceholderReplacement(dataPath, targetPath, this.xiaomaFolderName || 'xiaoma');
+          this.installedFiles.push(targetPath);
+        }
+      }
+    }
+
+    // Create a marker file to indicate this is a partial installation
+    const markerPath = path.join(targetBase, '.partial');
+    await fs.writeFile(
+      markerPath,
+      `This module contains only dependencies required by other modules.\nInstalled: ${new Date().toISOString()}\n`,
+    );
+  }
+
+  /**
+   * Private: Install core
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   */
+  async installCore(xiaomaDir) {
+    const sourcePath = getModulePath('core');
+    const targetPath = path.join(xiaomaDir, 'core');
+
+    // Copy core files with filtering for localskip agents
+    await this.copyDirectoryWithFiltering(sourcePath, targetPath);
+
+    // Process agent files to inject activation block
+    await this.processAgentFiles(targetPath, 'core');
+  }
+
+  /**
+   * Copy directory with filtering for localskip agents
+   * @param {string} sourcePath - Source directory path
+   * @param {string} targetPath - Target directory path
+   */
+  async copyDirectoryWithFiltering(sourcePath, targetPath) {
+    // Get all files in source directory
+    const files = await this.getFileList(sourcePath);
+
+    for (const file of files) {
+      // Skip config.yaml templates - we'll generate clean ones with actual values
+      if (file === 'config.yaml' || file.endsWith('/config.yaml')) {
+        continue;
+      }
+
+      const sourceFile = path.join(sourcePath, file);
+      const targetFile = path.join(targetPath, file);
+
+      // Check if this is an agent file
+      if (file.includes('agents/') && file.endsWith('.md')) {
+        // Read the file to check for localskip
+        const content = await fs.readFile(sourceFile, 'utf8');
+
+        // Check for localskip="true" in the agent tag
+        const agentMatch = content.match(/<agent[^>]*\slocalskip="true"[^>]*>/);
+        if (agentMatch) {
+          console.log(chalk.dim(`  Skipping web-only agent: ${path.basename(file)}`));
+          continue; // Skip this agent
+        }
+      }
+
+      // Copy the file with placeholder replacement
+      await this.copyFileWithPlaceholderReplacement(sourceFile, targetFile, this.xiaomaFolderName || 'xiaoma');
+
+      // Track the installed file
+      this.installedFiles.push(targetFile);
+    }
+  }
+
+  /**
+   * Get list of all files in a directory recursively
+   * @param {string} dir - Directory path
+   * @param {string} baseDir - Base directory for relative paths
+   * @returns {Array} List of relative file paths
+   */
+  async getFileList(dir, baseDir = dir) {
+    const files = [];
+    const entries = await fs.readdir(dir, { withFileTypes: true });
+
+    for (const entry of entries) {
+      const fullPath = path.join(dir, entry.name);
+
+      if (entry.isDirectory()) {
+        // Skip _module-installer directories
+        if (entry.name === '_module-installer') {
+          continue;
+        }
+        const subFiles = await this.getFileList(fullPath, baseDir);
+        files.push(...subFiles);
+      } else {
+        files.push(path.relative(baseDir, fullPath));
+      }
+    }
+
+    return files;
+  }
+
+  /**
+   * Process agent files to build YAML agents and inject activation blocks
+   * @param {string} modulePath - Path to module in xiaoma/ installation
+   * @param {string} moduleName - Module name
+   */
+  async processAgentFiles(modulePath, moduleName) {
+    const agentsPath = path.join(modulePath, 'agents');
+
+    // Check if agents directory exists
+    if (!(await fs.pathExists(agentsPath))) {
+      return; // No agents to process
+    }
+
+    // Determine project directory (parent of xiaoma/ directory)
+    const xiaomaDir = path.dirname(modulePath);
+    const projectDir = path.dirname(xiaomaDir);
+    const cfgAgentsDir = path.join(xiaomaDir, '_cfg', 'agents');
+
+    // Ensure _cfg/agents directory exists
+    await fs.ensureDir(cfgAgentsDir);
+
+    // Get all agent files
+    const agentFiles = await fs.readdir(agentsPath);
+
+    for (const agentFile of agentFiles) {
+      // Handle YAML agents - build them to .md
+      if (agentFile.endsWith('.agent.yaml')) {
+        const agentName = agentFile.replace('.agent.yaml', '');
+        const yamlPath = path.join(agentsPath, agentFile);
+        const mdPath = path.join(agentsPath, `${agentName}.md`);
+        const customizePath = path.join(cfgAgentsDir, `${moduleName}-${agentName}.customize.yaml`);
+
+        // Create customize template if it doesn't exist
+        if (!(await fs.pathExists(customizePath))) {
+          const genericTemplatePath = getSourcePath('utility', 'templates', 'agent.customize.template.yaml');
+          if (await fs.pathExists(genericTemplatePath)) {
+            await this.copyFileWithPlaceholderReplacement(genericTemplatePath, customizePath, this.xiaomaFolderName || 'xiaoma');
+            console.log(chalk.dim(`  Created customize: ${moduleName}-${agentName}.customize.yaml`));
+          }
+        }
+
+        // Build YAML + customize to .md
+        const customizeExists = await fs.pathExists(customizePath);
+        const xmlContent = await this.xmlHandler.buildFromYaml(yamlPath, customizeExists ? customizePath : null, {
+          includeMetadata: true,
+        });
+
+        // DO NOT replace {project-root} - LLMs understand this placeholder at runtime
+        // const processedContent = xmlContent.replaceAll('{project-root}', projectDir);
+
+        // Write the built .md file to xiaoma/{module}/agents/ with POSIX-compliant final newline
+        const content = xmlContent.endsWith('\n') ? xmlContent : xmlContent + '\n';
+        await fs.writeFile(mdPath, content, 'utf8');
+        this.installedFiles.push(mdPath);
+
+        // Remove the source YAML file - we can regenerate from installer source if needed
+        await fs.remove(yamlPath);
+
+        console.log(chalk.dim(`  Built agent: ${agentName}.md`));
+      }
+      // Handle legacy .md agents - inject activation if needed
+      else if (agentFile.endsWith('.md')) {
+        const agentPath = path.join(agentsPath, agentFile);
+        let content = await fs.readFile(agentPath, 'utf8');
+
+        // Check if content has agent XML and no activation block
+        if (content.includes('<agent') && !content.includes('<activation')) {
+          // Inject the activation block using XML handler
+          content = this.xmlHandler.injectActivationSimple(content);
+          // Ensure POSIX-compliant final newline
+          const finalContent = content.endsWith('\n') ? content : content + '\n';
+          await fs.writeFile(agentPath, finalContent, 'utf8');
+        }
+      }
+    }
+  }
+
+  /**
+   * Build standalone agents in xiaoma/agents/ directory
+   * @param {string} xiaomaDir - Path to xiaoma directory
+   * @param {string} projectDir - Path to project directory
+   */
+  async buildStandaloneAgents(xiaomaDir, projectDir) {
+    const standaloneAgentsPath = path.join(xiaomaDir, 'agents');
+    const cfgAgentsDir = path.join(xiaomaDir, '_cfg', 'agents');
+
+    // Check if standalone agents directory exists
+    if (!(await fs.pathExists(standaloneAgentsPath))) {
+      return;
+    }
+
+    // Get all subdirectories in agents/
+    const agentDirs = await fs.readdir(standaloneAgentsPath, { withFileTypes: true });
+
+    for (const agentDir of agentDirs) {
+      if (!agentDir.isDirectory()) continue;
+
+      const agentDirPath = path.join(standaloneAgentsPath, agentDir.name);
+
+      // Find any .agent.yaml file in the directory
+      const files = await fs.readdir(agentDirPath);
+      const yamlFile = files.find((f) => f.endsWith('.agent.yaml'));
+
+      if (!yamlFile) continue;
+
+      const agentName = path.basename(yamlFile, '.agent.yaml');
+      const sourceYamlPath = path.join(agentDirPath, yamlFile);
+      const targetMdPath = path.join(agentDirPath, `${agentName}.md`);
+      const customizePath = path.join(cfgAgentsDir, `${agentName}.customize.yaml`);
+
+      // Check for customizations
+      const customizeExists = await fs.pathExists(customizePath);
+      let customizedFields = [];
+
+      if (customizeExists) {
+        const customizeContent = await fs.readFile(customizePath, 'utf8');
+        const yaml = require('js-yaml');
+        const customizeYaml = yaml.load(customizeContent);
+
+        // Detect what fields are customized (similar to rebuildAgentFiles)
+        if (customizeYaml) {
+          if (customizeYaml.persona) {
+            for (const [key, value] of Object.entries(customizeYaml.persona)) {
+              if (value !== '' && value !== null && !(Array.isArray(value) && value.length === 0)) {
+                customizedFields.push(`persona.${key}`);
+              }
+            }
+          }
+          if (customizeYaml.agent?.metadata) {
+            for (const [key, value] of Object.entries(customizeYaml.agent.metadata)) {
+              if (value !== '' && value !== null) {
+                customizedFields.push(`metadata.${key}`);
+              }
+            }
+          }
+          if (customizeYaml.critical_actions && customizeYaml.critical_actions.length > 0) {
+            customizedFields.push('critical_actions');
+          }
+          if (customizeYaml.menu && customizeYaml.menu.length > 0) {
+            customizedFields.push('menu');
+          }
+        }
+      }
+
+      // Build YAML to XML .md
+      const xmlContent = await this.xmlHandler.buildFromYaml(sourceYamlPath, customizeExists ? customizePath : null, {
+        includeMetadata: true,
+      });
+
+      // DO NOT replace {project-root} - LLMs understand this placeholder at runtime
+      // const processedContent = xmlContent.replaceAll('{project-root}', projectDir);
+
+      // Write the built .md file with POSIX-compliant final newline
+      const content = xmlContent.endsWith('\n') ? xmlContent : xmlContent + '\n';
+      await fs.writeFile(targetMdPath, content, 'utf8');
+
+      // Display result
+      if (customizedFields.length > 0) {
+        console.log(chalk.dim(`  Built standalone agent: ${agentName}.md `) + chalk.yellow(`(customized: ${customizedFields.join(', ')})`));
+      } else {
+        console.log(chalk.dim(`  Built standalone agent: ${agentName}.md`));
+      }
+    }
+  }
+
+  /**
+   * Rebuild agent files from installer source (for compile command)
+   * @param {string} modulePath - Path to module in xiaoma/ installation
+   * @param {string} moduleName - Module name
+   */
+  async rebuildAgentFiles(modulePath, moduleName) {
+    // Get source agents directory from installer
+    const sourceAgentsPath =
+      moduleName === 'core' ? path.join(getModulePath('core'), 'agents') : path.join(getSourcePath(`modules/${moduleName}`), 'agents');
+
+    if (!(await fs.pathExists(sourceAgentsPath))) {
+      return; // No source agents to rebuild
+    }
+
+    // Determine project directory (parent of xiaoma/ directory)
+    const xiaomaDir = path.dirname(modulePath);
+    const projectDir = path.dirname(xiaomaDir);
+    const cfgAgentsDir = path.join(xiaomaDir, '_cfg', 'agents');
+    const targetAgentsPath = path.join(modulePath, 'agents');
+
+    // Ensure target directory exists
+    await fs.ensureDir(targetAgentsPath);
+
+    // Get all YAML agent files from source
+    const sourceFiles = await fs.readdir(sourceAgentsPath);
+
+    for (const file of sourceFiles) {
+      if (file.endsWith('.agent.yaml')) {
+        const agentName = file.replace('.agent.yaml', '');
+        const sourceYamlPath = path.join(sourceAgentsPath, file);
+        const targetMdPath = path.join(targetAgentsPath, `${agentName}.md`);
+        const customizePath = path.join(cfgAgentsDir, `${moduleName}-${agentName}.customize.yaml`);
+
+        // Check for customizations
+        const customizeExists = await fs.pathExists(customizePath);
+        let customizedFields = [];
+
+        if (customizeExists) {
+          const customizeContent = await fs.readFile(customizePath, 'utf8');
+          const yaml = require('js-yaml');
+          const customizeYaml = yaml.load(customizeContent);
+
+          // Detect what fields are customized
+          if (customizeYaml) {
+            if (customizeYaml.persona) {
+              for (const [key, value] of Object.entries(customizeYaml.persona)) {
+                if (value !== '' && value !== null && !(Array.isArray(value) && value.length === 0)) {
+                  customizedFields.push(`persona.${key}`);
+                }
+              }
+            }
+            if (customizeYaml.agent?.metadata) {
+              for (const [key, value] of Object.entries(customizeYaml.agent.metadata)) {
+                if (value !== '' && value !== null) {
+                  customizedFields.push(`metadata.${key}`);
+                }
+              }
+            }
+            if (customizeYaml.critical_actions && customizeYaml.critical_actions.length > 0) {
+              customizedFields.push('critical_actions');
+            }
+            if (customizeYaml.memories && customizeYaml.memories.length > 0) {
+              customizedFields.push('memories');
+            }
+            if (customizeYaml.menu && customizeYaml.menu.length > 0) {
+              customizedFields.push('menu');
+            }
+            if (customizeYaml.prompts && customizeYaml.prompts.length > 0) {
+              customizedFields.push('prompts');
+            }
+          }
+        }
+
+        // Build YAML + customize to .md
+        const xmlContent = await this.xmlHandler.buildFromYaml(sourceYamlPath, customizeExists ? customizePath : null, {
+          includeMetadata: true,
+        });
+
+        // DO NOT replace {project-root} - LLMs understand this placeholder at runtime
+        // const processedContent = xmlContent.replaceAll('{project-root}', projectDir);
+
+        // Write the rebuilt .md file with POSIX-compliant final newline
+        const content = xmlContent.endsWith('\n') ? xmlContent : xmlContent + '\n';
+        await fs.writeFile(targetMdPath, content, 'utf8');
+
+        // Display result with customizations if any
+        if (customizedFields.length > 0) {
+          console.log(chalk.dim(`  Rebuilt agent: ${agentName}.md `) + chalk.yellow(`(customized: ${customizedFields.join(', ')})`));
+        } else {
+          console.log(chalk.dim(`  Rebuilt agent: ${agentName}.md`));
+        }
+      }
+    }
+  }
+
+  /**
+   * Compile/rebuild all agents and tasks for quick updates
+   * @param {Object} config - Compilation configuration
+   * @returns {Object} Compilation results
+   */
+  async compileAgents(config) {
+    const ora = require('ora');
+    const spinner = ora('Starting agent compilation...').start();
+
+    try {
+      const projectDir = path.resolve(config.directory);
+      const xiaomaDir = await this.findBmadDir(projectDir);
+
+      // Check if xiaoma directory exists
+      if (!(await fs.pathExists(xiaomaDir))) {
+        spinner.fail('No XIAOMA installation found');
+        throw new Error(`XIAOMA not installed at ${xiaomaDir}`);
+      }
+
+      let agentCount = 0;
+      let taskCount = 0;
+
+      // Process all modules in xiaoma directory
+      spinner.text = 'Rebuilding agent files...';
+      const entries = await fs.readdir(xiaomaDir, { withFileTypes: true });
+
+      for (const entry of entries) {
+        if (entry.isDirectory() && entry.name !== '_cfg' && entry.name !== 'docs') {
+          const modulePath = path.join(xiaomaDir, entry.name);
+
+          // Special handling for standalone agents in xiaoma/agents/ directory
+          if (entry.name === 'agents') {
+            spinner.text = 'Building standalone agents...';
+            await this.buildStandaloneAgents(xiaomaDir, projectDir);
+
+            // Count standalone agents
+            const standaloneAgentsPath = path.join(xiaomaDir, 'agents');
+            const standaloneAgentDirs = await fs.readdir(standaloneAgentsPath, { withFileTypes: true });
+            for (const agentDir of standaloneAgentDirs) {
+              if (agentDir.isDirectory()) {
+                const agentDirPath = path.join(standaloneAgentsPath, agentDir.name);
+                const agentFiles = await fs.readdir(agentDirPath);
+                agentCount += agentFiles.filter((f) => f.endsWith('.md') && !f.endsWith('.agent.yaml')).length;
+              }
+            }
+          } else {
+            // Rebuild module agents from installer source
+            const agentsPath = path.join(modulePath, 'agents');
+            if (await fs.pathExists(agentsPath)) {
+              await this.rebuildAgentFiles(modulePath, entry.name);
+              const agentFiles = await fs.readdir(agentsPath);
+              agentCount += agentFiles.filter((f) => f.endsWith('.md')).length;
+            }
+
+            // Count tasks (already built)
+            const tasksPath = path.join(modulePath, 'tasks');
+            if (await fs.pathExists(tasksPath)) {
+              const taskFiles = await fs.readdir(tasksPath);
+              taskCount += taskFiles.filter((f) => f.endsWith('.md')).length;
+            }
+          }
+        }
+      }
+
+      // Reinstall custom agents from _cfg/custom/agents/ sources
+      spinner.start('Rebuilding custom agents...');
+      const customAgentResults = await this.reinstallCustomAgents(projectDir, xiaomaDir);
+      if (customAgentResults.count > 0) {
+        spinner.succeed(`Rebuilt ${customAgentResults.count} custom agent${customAgentResults.count > 1 ? 's' : ''}`);
+        agentCount += customAgentResults.count;
+      } else {
+        spinner.succeed('No custom agents found to rebuild');
+      }
+
+      // Skip full manifest regeneration during compileAgents to preserve custom agents
+      // Custom agents are already added to manifests during individual installation
+      // Only regenerate YAML manifest for IDE updates if needed
+      const existingManifestPath = path.join(xiaomaDir, '_cfg', 'manifest.yaml');
+      let existingIdes = [];
+      if (await fs.pathExists(existingManifestPath)) {
+        const manifestContent = await fs.readFile(existingManifestPath, 'utf8');
+        const yaml = require('js-yaml');
+        const manifest = yaml.load(manifestContent);
+        existingIdes = manifest.ides || [];
+      }
+
+      // Update IDE configurations using the existing IDE list from manifest
+      if (existingIdes && existingIdes.length > 0) {
+        spinner.start('Updating IDE configurations...');
+
+        for (const ide of existingIdes) {
+          spinner.text = `Updating ${ide}...`;
+
+          // Stop spinner before IDE setup to prevent blocking any potential prompts
+          // However, we pass _alreadyConfigured to skip all prompts during compile
+          spinner.stop();
+
+          await this.ideManager.setup(ide, projectDir, xiaomaDir, {
+            selectedModules: installedModules,
+            skipModuleInstall: true, // Skip module installation, just update IDE files
+            verbose: config.verbose,
+            preCollectedConfig: { _alreadyConfigured: true }, // Skip all interactive prompts during compile
+          });
+
+          // Restart spinner for next IDE
+          if (existingIdes.indexOf(ide) < existingIdes.length - 1) {
+            spinner.start('Updating IDE configurations...');
+          }
+        }
+
+        console.log(chalk.green('✓ IDE configurations updated'));
+      } else {
+        console.log(chalk.yellow('⚠️  No IDEs configured. Skipping IDE update.'));
+      }
+
+      return { agentCount, taskCount };
+    } catch (error) {
+      spinner.fail('Compilation failed');
+      throw error;
+    }
+  }
+
+  /**
+   * Private: Update core
+   */
+  async updateCore(xiaomaDir, force = false) {
+    const sourcePath = getModulePath('core');
+    const targetPath = path.join(xiaomaDir, 'core');
+
+    if (force) {
+      await fs.remove(targetPath);
+      await this.installCore(xiaomaDir);
+    } else {
+      // Selective update - preserve user modifications
+      await this.fileOps.syncDirectory(sourcePath, targetPath);
+    }
+  }
+
+  /**
+   * Quick update method - preserves all settings and only prompts for new config fields
+   * @param {Object} config - Configuration with directory
+   * @returns {Object} Update result
+   */
+  async quickUpdate(config) {
+    const ora = require('ora');
+    const spinner = ora('Starting quick update...').start();
+
+    try {
+      const projectDir = path.resolve(config.directory);
+      const xiaomaDir = await this.findBmadDir(projectDir);
+
+      // Check if xiaoma directory exists
+      if (!(await fs.pathExists(xiaomaDir))) {
+        spinner.fail('No XIAOMA installation found');
+        throw new Error(`XIAOMA not installed at ${xiaomaDir}. Use regular install for first-time setup.`);
+      }
+
+      spinner.text = 'Detecting installed modules and configuration...';
+
+      // Detect existing installation
+      const existingInstall = await this.detector.detect(xiaomaDir);
+      const installedModules = existingInstall.modules.map((m) => m.id);
+      const configuredIdes = existingInstall.ides || [];
+
+      // Load saved IDE configurations
+      const savedIdeConfigs = await this.ideConfigManager.loadAllIdeConfigs(xiaomaDir);
+
+      // Get available modules (what we have source for)
+      const availableModules = await this.moduleManager.listAvailable();
+      const availableModuleIds = new Set(availableModules.map((m) => m.id));
+
+      // Only update modules that are BOTH installed AND available (we have source for)
+      const modulesToUpdate = installedModules.filter((id) => availableModuleIds.has(id));
+      const skippedModules = installedModules.filter((id) => !availableModuleIds.has(id));
+
+      spinner.succeed(`Found ${modulesToUpdate.length} module(s) to update and ${configuredIdes.length} configured tool(s)`);
+
+      if (skippedModules.length > 0) {
+        console.log(chalk.yellow(`⚠️  Skipping ${skippedModules.length} module(s) - no source available: ${skippedModules.join(', ')}`));
+      }
+
+      // Load existing configs and collect new fields (if any)
+      console.log(chalk.cyan('\n📋 Checking for new configuration options...'));
+      await this.configCollector.loadExistingConfig(projectDir);
+
+      let promptedForNewFields = false;
+
+      // Check core config for new fields
+      const corePrompted = await this.configCollector.collectModuleConfigQuick('core', projectDir, true);
+      if (corePrompted) {
+        promptedForNewFields = true;
+      }
+
+      // Check each module we're updating for new fields (NOT skipped modules)
+      for (const moduleName of modulesToUpdate) {
+        const modulePrompted = await this.configCollector.collectModuleConfigQuick(moduleName, projectDir, true);
+        if (modulePrompted) {
+          promptedForNewFields = true;
+        }
+      }
+
+      if (!promptedForNewFields) {
+        console.log(chalk.green('✓ All configuration is up to date, no new options to configure'));
+      }
+
+      // Add metadata
+      this.configCollector.collectedConfig._meta = {
+        version: require(path.join(getProjectRoot(), 'package.json')).version,
+        installDate: new Date().toISOString(),
+        lastModified: new Date().toISOString(),
+      };
+
+      // Check if xiaoma_folder has changed
+      const existingBmadFolderName = path.basename(xiaomaDir);
+      const newBmadFolderName = this.configCollector.collectedConfig.core?.xiaoma_folder || existingBmadFolderName;
+
+      if (existingBmadFolderName === newBmadFolderName) {
+        // Normal quick update - start the spinner
+        console.log(chalk.cyan('Updating XIAOMA installation...'));
+      } else {
+        // Folder name has changed - stop spinner and let install() handle it
+        spinner.stop();
+        console.log(chalk.yellow(`\n⚠️  Folder name will change: ${existingBmadFolderName} → ${newBmadFolderName}`));
+        console.log(chalk.yellow('The installer will handle the folder migration.\n'));
+      }
+
+      // Build the config object for the installer
+      const installConfig = {
+        directory: projectDir,
+        installCore: true,
+        modules: modulesToUpdate, // Only update modules we have source for
+        ides: configuredIdes,
+        skipIde: configuredIdes.length === 0,
+        coreConfig: this.configCollector.collectedConfig.core,
+        actionType: 'install', // Use regular install flow
+        _quickUpdate: true, // Flag to skip certain prompts
+        _preserveModules: skippedModules, // Preserve these in manifest even though we didn't update them
+        _savedIdeConfigs: savedIdeConfigs, // Pass saved IDE configs to installer
+      };
+
+      // Call the standard install method
+      const result = await this.install(installConfig);
+
+      // Only succeed the spinner if it's still spinning
+      // (install method might have stopped it if folder name changed)
+      if (spinner.isSpinning) {
+        spinner.succeed('Quick update complete!');
+      }
+
+      return {
+        success: true,
+        moduleCount: modulesToUpdate.length + 1, // +1 for core
+        hadNewFields: promptedForNewFields,
+        modules: ['core', ...modulesToUpdate],
+        skippedModules: skippedModules,
+        ides: configuredIdes,
+      };
+    } catch (error) {
+      spinner.fail('Quick update failed');
+      throw error;
+    }
+  }
+
+  /**
+   * Private: Prompt for update action
+   */
+  async promptUpdateAction() {
+    const inquirer = require('inquirer');
+    return await inquirer.prompt([
+      {
+        type: 'list',
+        name: 'action',
+        message: 'What would you like to do?',
+        choices: [
+          { name: 'Update existing installation', value: 'update' },
+          { name: 'Remove and reinstall', value: 'reinstall' },
+          { name: 'Cancel', value: 'cancel' },
+        ],
+      },
+    ]);
+  }
+
+  /**
+   * Handle legacy XIAOMA v4 migration with automatic backup
+   * @param {string} projectDir - Project directory
+   * @param {Object} legacyV4 - Legacy V4 detection result with offenders array
+   */
+  async handleLegacyV4Migration(projectDir, legacyV4) {
+    console.log(chalk.yellow.bold('\n⚠️  Legacy XIAOMA v4 detected'));
+    console.log(chalk.dim('The installer found legacy artefacts in your project.\n'));
+
+    // Separate .xiaoma* folders (auto-backup) from other offending paths (manual cleanup)
+    const xiaomaFolders = legacyV4.offenders.filter((p) => {
+      const name = path.basename(p);
+      return name.startsWith('.xiaoma'); // Only dot-prefixed folders get auto-backed up
+    });
+    const otherOffenders = legacyV4.offenders.filter((p) => {
+      const name = path.basename(p);
+      return !name.startsWith('.xiaoma'); // Everything else is manual cleanup
+    });
+
+    const inquirer = require('inquirer');
+
+    // Show warning for other offending paths FIRST
+    if (otherOffenders.length > 0) {
+      console.log(chalk.yellow('⚠️  Recommended cleanup:'));
+      console.log(chalk.dim('It is recommended to remove the following items before proceeding:\n'));
+      for (const p of otherOffenders) console.log(chalk.dim(` - ${p}`));
+
+      console.log(chalk.cyan('\nCleanup commands you can copy/paste:'));
+      console.log(chalk.dim('macOS/Linux:'));
+      for (const p of otherOffenders) console.log(chalk.dim(`  rm -rf '${p}'`));
+      console.log(chalk.dim('Windows:'));
+      for (const p of otherOffenders) console.log(chalk.dim(`  rmdir /S /Q "${p}"`));
+
+      const { cleanedUp } = await inquirer.prompt([
+        {
+          type: 'confirm',
+          name: 'cleanedUp',
+          message: 'Have you completed the recommended cleanup? (You can proceed without it, but it is recommended)',
+          default: false,
+        },
+      ]);
+
+      if (cleanedUp) {
+        console.log(chalk.green('✓ Cleanup acknowledged\n'));
+      } else {
+        console.log(chalk.yellow('⚠️  Proceeding without recommended cleanup\n'));
+      }
+    }
+
+    // Handle .xiaoma* folders with automatic backup
+    if (xiaomaFolders.length > 0) {
+      console.log(chalk.cyan('The following legacy folders will be moved to v4-backup:'));
+      for (const p of xiaomaFolders) console.log(chalk.dim(` - ${p}`));
+
+      const { proceed } = await inquirer.prompt([
+        {
+          type: 'confirm',
+          name: 'proceed',
+          message: 'Proceed with backing up legacy v4 folders?',
+          default: true,
+        },
+      ]);
+
+      if (proceed) {
+        const backupDir = path.join(projectDir, 'v4-backup');
+        await fs.ensureDir(backupDir);
+
+        for (const folder of xiaomaFolders) {
+          const folderName = path.basename(folder);
+          const backupPath = path.join(backupDir, folderName);
+
+          // If backup already exists, add timestamp
+          let finalBackupPath = backupPath;
+          if (await fs.pathExists(backupPath)) {
+            const timestamp = new Date().toISOString().replaceAll(/[:.]/g, '-').split('T')[0];
+            finalBackupPath = path.join(backupDir, `${folderName}-${timestamp}`);
+          }
+
+          await fs.move(folder, finalBackupPath, { overwrite: false });
+          console.log(chalk.green(`✓ Moved ${folderName} to ${path.relative(projectDir, finalBackupPath)}`));
+        }
+      } else {
+        throw new Error('Installation cancelled by user');
+      }
+    }
+  }
+
+  /**
+   * Read files-manifest.csv
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @returns {Array} Array of file entries from files-manifest.csv
+   */
+  async readFilesManifest(xiaomaDir) {
+    const filesManifestPath = path.join(xiaomaDir, '_cfg', 'files-manifest.csv');
+    if (!(await fs.pathExists(filesManifestPath))) {
+      return [];
+    }
+
+    try {
+      const content = await fs.readFile(filesManifestPath, 'utf8');
+      const lines = content.split('\n');
+      const files = [];
+
+      for (let i = 1; i < lines.length; i++) {
+        // Skip header
+        const line = lines[i].trim();
+        if (!line) continue;
+
+        // Parse CSV line properly handling quoted values
+        const parts = [];
+        let current = '';
+        let inQuotes = false;
+
+        for (const char of line) {
+          if (char === '"') {
+            inQuotes = !inQuotes;
+          } else if (char === ',' && !inQuotes) {
+            parts.push(current);
+            current = '';
+          } else {
+            current += char;
+          }
+        }
+        parts.push(current); // Add last part
+
+        if (parts.length >= 4) {
+          files.push({
+            type: parts[0],
+            name: parts[1],
+            module: parts[2],
+            path: parts[3],
+            hash: parts[4] || null, // Hash may not exist in old manifests
+          });
+        }
+      }
+
+      return files;
+    } catch (error) {
+      console.warn('Warning: Could not read files-manifest.csv:', error.message);
+      return [];
+    }
+  }
+
+  /**
+   * Detect custom and modified files
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {Array} existingFilesManifest - Previous files from files-manifest.csv
+   * @returns {Object} Object with customFiles and modifiedFiles arrays
+   */
+  async detectCustomFiles(xiaomaDir, existingFilesManifest) {
+    const customFiles = [];
+    const modifiedFiles = [];
+
+    // Check if the manifest has hashes - if not, we can't detect modifications
+    let manifestHasHashes = false;
+    if (existingFilesManifest && existingFilesManifest.length > 0) {
+      manifestHasHashes = existingFilesManifest.some((f) => f.hash);
+    }
+
+    // Build map of previously installed files from files-manifest.csv with their hashes
+    const installedFilesMap = new Map();
+    for (const fileEntry of existingFilesManifest) {
+      if (fileEntry.path) {
+        // Files in manifest are stored as relative paths starting with 'xiaoma/'
+        // Convert to absolute path
+        const relativePath = fileEntry.path.startsWith('xiaoma/') ? fileEntry.path.slice(5) : fileEntry.path;
+        const absolutePath = path.join(xiaomaDir, relativePath);
+        installedFilesMap.set(path.normalize(absolutePath), {
+          hash: fileEntry.hash,
+          relativePath: relativePath,
+        });
+      }
+    }
+
+    // Recursively scan xiaomaDir for all files
+    const scanDirectory = async (dir) => {
+      try {
+        const entries = await fs.readdir(dir, { withFileTypes: true });
+        for (const entry of entries) {
+          const fullPath = path.join(dir, entry.name);
+
+          if (entry.isDirectory()) {
+            // Skip certain directories
+            if (entry.name === 'node_modules' || entry.name === '.git') {
+              continue;
+            }
+            await scanDirectory(fullPath);
+          } else if (entry.isFile()) {
+            const normalizedPath = path.normalize(fullPath);
+            const fileInfo = installedFilesMap.get(normalizedPath);
+
+            // Skip certain system files that are auto-generated
+            const relativePath = path.relative(xiaomaDir, fullPath);
+            const fileName = path.basename(fullPath);
+
+            // Skip _cfg directory - system files
+            if (relativePath.startsWith('_cfg/') || relativePath.startsWith('_cfg\\')) {
+              continue;
+            }
+
+            // Skip config.yaml files - these are regenerated on each install/update
+            // Users should use _cfg/agents/ override files instead
+            if (fileName === 'config.yaml') {
+              continue;
+            }
+
+            if (!fileInfo) {
+              // File not in manifest = custom file
+              customFiles.push(fullPath);
+            } else if (manifestHasHashes && fileInfo.hash) {
+              // File in manifest with hash - check if it was modified
+              const currentHash = await this.manifest.calculateFileHash(fullPath);
+              if (currentHash && currentHash !== fileInfo.hash) {
+                // Hash changed = file was modified
+                modifiedFiles.push({
+                  path: fullPath,
+                  relativePath: fileInfo.relativePath,
+                });
+              }
+            }
+            // If manifest doesn't have hashes, we can't detect modifications
+            // so we just skip files that are in the manifest
+          }
+        }
+      } catch {
+        // Ignore errors scanning directories
+      }
+    };
+
+    await scanDirectory(xiaomaDir);
+    return { customFiles, modifiedFiles };
+  }
+
+  /**
+   * Private: Create agent configuration files
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {Object} userInfo - User information including name and language
+   */
+  async createAgentConfigs(xiaomaDir, userInfo = null) {
+    const agentConfigDir = path.join(xiaomaDir, '_cfg', 'agents');
+    await fs.ensureDir(agentConfigDir);
+
+    // Get all agents from all modules
+    const agents = [];
+    const agentDetails = []; // For manifest generation
+
+    // Check modules for agents (including core)
+    const entries = await fs.readdir(xiaomaDir, { withFileTypes: true });
+    for (const entry of entries) {
+      if (entry.isDirectory() && entry.name !== '_cfg') {
+        const moduleAgentsPath = path.join(xiaomaDir, entry.name, 'agents');
+        if (await fs.pathExists(moduleAgentsPath)) {
+          const agentFiles = await fs.readdir(moduleAgentsPath);
+          for (const agentFile of agentFiles) {
+            if (agentFile.endsWith('.md')) {
+              const agentPath = path.join(moduleAgentsPath, agentFile);
+              const agentContent = await fs.readFile(agentPath, 'utf8');
+
+              // Skip agents with localskip="true"
+              const hasLocalSkip = agentContent.match(/<agent[^>]*\slocalskip="true"[^>]*>/);
+              if (hasLocalSkip) {
+                continue; // Skip this agent - it should not have been installed
+              }
+
+              const agentName = path.basename(agentFile, '.md');
+
+              // Extract any nodes with agentConfig="true"
+              const agentConfigNodes = this.extractAgentConfigNodes(agentContent);
+
+              agents.push({
+                name: agentName,
+                module: entry.name,
+                agentConfigNodes: agentConfigNodes,
+              });
+
+              // Use shared AgentPartyGenerator to extract details
+              let details = AgentPartyGenerator.extractAgentDetails(agentContent, entry.name, agentName);
+
+              // Apply config overrides if they exist
+              if (details) {
+                const configPath = path.join(agentConfigDir, `${entry.name}-${agentName}.md`);
+                if (await fs.pathExists(configPath)) {
+                  const configContent = await fs.readFile(configPath, 'utf8');
+                  details = AgentPartyGenerator.applyConfigOverrides(details, configContent);
+                }
+                agentDetails.push(details);
+              }
+            }
+          }
+        }
+      }
+    }
+
+    // Create config file for each agent
+    let createdCount = 0;
+    let skippedCount = 0;
+
+    // Load agent config template
+    const templatePath = getSourcePath('utility', 'models', 'agent-config-template.md');
+    const templateContent = await fs.readFile(templatePath, 'utf8');
+
+    for (const agent of agents) {
+      const configPath = path.join(agentConfigDir, `${agent.module}-${agent.name}.md`);
+
+      // Skip if config file already exists (preserve custom configurations)
+      if (await fs.pathExists(configPath)) {
+        skippedCount++;
+        continue;
+      }
+
+      // Build config content header
+      let configContent = `# Agent Config: ${agent.name}\n\n`;
+
+      // Process template and add agent-specific config nodes
+      let processedTemplate = templateContent;
+
+      // Replace {core:user_name} placeholder with actual user name if available
+      if (userInfo && userInfo.userName) {
+        processedTemplate = processedTemplate.replaceAll('{core:user_name}', userInfo.userName);
+      }
+
+      // Replace {core:communication_language} placeholder with actual language if available
+      if (userInfo && userInfo.responseLanguage) {
+        processedTemplate = processedTemplate.replaceAll('{core:communication_language}', userInfo.responseLanguage);
+      }
+
+      // If this agent has agentConfig nodes, add them after the existing comment
+      if (agent.agentConfigNodes && agent.agentConfigNodes.length > 0) {
+        // Find the agent-specific configuration nodes comment
+        const commentPattern = /(\s*<!-- Agent-specific configuration nodes -->)/;
+        const commentMatch = processedTemplate.match(commentPattern);
+
+        if (commentMatch) {
+          // Add nodes right after the comment
+          let agentSpecificNodes = '';
+          for (const node of agent.agentConfigNodes) {
+            agentSpecificNodes += `\n    ${node}`;
+          }
+
+          processedTemplate = processedTemplate.replace(commentPattern, `$1${agentSpecificNodes}`);
+        }
+      }
+
+      configContent += processedTemplate;
+
+      // Ensure POSIX-compliant final newline
+      if (!configContent.endsWith('\n')) {
+        configContent += '\n';
+      }
+
+      await fs.writeFile(configPath, configContent, 'utf8');
+      this.installedFiles.push(configPath); // Track agent config files
+      createdCount++;
+    }
+
+    // Generate agent manifest with overrides applied
+    await this.generateAgentManifest(xiaomaDir, agentDetails);
+
+    return { total: agents.length, created: createdCount, skipped: skippedCount };
+  }
+
+  /**
+   * Generate agent manifest XML file
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {Array} agentDetails - Array of agent details
+   */
+  async generateAgentManifest(xiaomaDir, agentDetails) {
+    const manifestPath = path.join(xiaomaDir, '_cfg', 'agent-manifest.csv');
+    await AgentPartyGenerator.writeAgentParty(manifestPath, agentDetails, { forWeb: false });
+  }
+
+  /**
+   * Extract nodes with agentConfig="true" from agent content
+   * @param {string} content - Agent file content
+   * @returns {Array} Array of XML nodes that should be added to agent config
+   */
+  extractAgentConfigNodes(content) {
+    const nodes = [];
+
+    try {
+      // Find all XML nodes with agentConfig="true"
+      // Match self-closing tags and tags with content
+      const selfClosingPattern = /<([a-zA-Z][a-zA-Z0-9_-]*)\s+[^>]*agentConfig="true"[^>]*\/>/g;
+      const withContentPattern = /<([a-zA-Z][a-zA-Z0-9_-]*)\s+[^>]*agentConfig="true"[^>]*>([\s\S]*?)<\/\1>/g;
+
+      // Extract self-closing tags
+      let match;
+      while ((match = selfClosingPattern.exec(content)) !== null) {
+        // Extract just the tag without children (structure only)
+        const tagMatch = match[0].match(/<([a-zA-Z][a-zA-Z0-9_-]*)([^>]*)\/>/);
+        if (tagMatch) {
+          const tagName = tagMatch[1];
+          const attributes = tagMatch[2].replace(/\s*agentConfig="true"/, ''); // Remove agentConfig attribute
+          nodes.push(`<${tagName}${attributes}></${tagName}>`);
+        }
+      }
+
+      // Extract tags with content
+      while ((match = withContentPattern.exec(content)) !== null) {
+        const fullMatch = match[0];
+        const tagName = match[1];
+
+        // Extract opening tag with attributes (removing agentConfig="true")
+        const openingTagMatch = fullMatch.match(new RegExp(`<${tagName}([^>]*)>`));
+        if (openingTagMatch) {
+          const attributes = openingTagMatch[1].replace(/\s*agentConfig="true"/, '');
+          // Add empty node structure (no children)
+          nodes.push(`<${tagName}${attributes}></${tagName}>`);
+        }
+      }
+    } catch (error) {
+      console.error('Error extracting agentConfig nodes:', error);
+    }
+
+    return nodes;
+  }
+
+  /**
+   * Reinstall custom agents from backup and source locations
+   * This preserves custom agents across quick updates/reinstalls
+   * @param {string} projectDir - Project directory
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @returns {Object} Result with count and agent names
+   */
+  async reinstallCustomAgents(projectDir, xiaomaDir) {
+    const {
+      discoverAgents,
+      loadAgentConfig,
+      extractManifestData,
+      addToManifest,
+      createIdeSlashCommands,
+      updateManifestYaml,
+    } = require('../../../lib/agent/installer');
+    const { compileAgent } = require('../../../lib/agent/compiler');
+
+    const results = { count: 0, agents: [] };
+
+    // Check multiple locations for custom agents
+    const sourceLocations = [
+      path.join(xiaomaDir, '_cfg', 'custom', 'agents'), // Backup location
+      path.join(xiaomaDir, 'custom', 'src', 'agents'), // XIAOMA folder source location
+      path.join(projectDir, 'custom', 'src', 'agents'), // Project root source location
+    ];
+
+    let foundAgents = [];
+    let processedAgents = new Set(); // Track to avoid duplicates
+
+    // Discover agents from all locations
+    for (const location of sourceLocations) {
+      if (await fs.pathExists(location)) {
+        const agents = discoverAgents(location);
+        // Only add agents we haven't processed yet
+        const newAgents = agents.filter((agent) => !processedAgents.has(agent.name));
+        foundAgents.push(...newAgents);
+        for (const agent of newAgents) processedAgents.add(agent.name);
+      }
+    }
+
+    if (foundAgents.length === 0) {
+      return results;
+    }
+
+    try {
+      const customAgentsDir = path.join(xiaomaDir, 'custom', 'agents');
+      await fs.ensureDir(customAgentsDir);
+
+      const manifestFile = path.join(xiaomaDir, '_cfg', 'agent-manifest.csv');
+      const manifestYamlFile = path.join(xiaomaDir, '_cfg', 'manifest.yaml');
+
+      for (const agent of foundAgents) {
+        try {
+          const agentConfig = loadAgentConfig(agent.yamlFile);
+          const finalAgentName = agent.name; // Already named correctly from save
+
+          // Determine agent type from the name (e.g., "fred-commit-poet" → "commit-poet")
+          let agentType = finalAgentName;
+          const parts = finalAgentName.split('-');
+          if (parts.length >= 2) {
+            // Try to extract type (last part or last two parts)
+            // For "fred-commit-poet", we want "commit-poet"
+            // This is heuristic - could be improved with metadata storage
+            agentType = parts.slice(-2).join('-'); // Take last 2 parts as type
+          }
+
+          // Create target directory
+          const agentTargetDir = path.join(customAgentsDir, finalAgentName);
+          await fs.ensureDir(agentTargetDir);
+
+          // Calculate paths
+          const compiledFileName = `${finalAgentName}.md`;
+          const compiledPath = path.join(agentTargetDir, compiledFileName);
+          const relativePath = path.relative(projectDir, compiledPath);
+
+          // Compile with embedded defaults (answers are already in defaults section)
+          const { xml, metadata } = compileAgent(
+            await fs.readFile(agent.yamlFile, 'utf8'),
+            agentConfig.defaults || {},
+            finalAgentName,
+            relativePath,
+          );
+
+          // Write compiled agent
+          await fs.writeFile(compiledPath, xml, 'utf8');
+
+          // Backup source YAML to _cfg/custom/agents if not already there
+          const cfgAgentsBackupDir = path.join(xiaomaDir, '_cfg', 'custom', 'agents');
+          await fs.ensureDir(cfgAgentsBackupDir);
+          const backupYamlPath = path.join(cfgAgentsBackupDir, `${finalAgentName}.agent.yaml`);
+
+          // Only backup if source is not already in backup location
+          if (agent.yamlFile !== backupYamlPath) {
+            await fs.copy(agent.yamlFile, backupYamlPath);
+          }
+
+          // Copy sidecar files if expert agent
+          if (agent.hasSidecar && agent.type === 'expert') {
+            const { copySidecarFiles } = require('../../../lib/agent/installer');
+            copySidecarFiles(agent.path, agentTargetDir, agent.yamlFile);
+          }
+
+          // Update manifest CSV
+          if (await fs.pathExists(manifestFile)) {
+            // Preserve YAML metadata for persona name, but override id for filename
+            const manifestMetadata = {
+              ...metadata,
+              id: relativePath, // Use the compiled agent path for id
+              name: metadata.name || finalAgentName, // Use YAML metadata.name (persona name) or fallback
+              title: metadata.title, // Use YAML title
+              icon: metadata.icon, // Use YAML icon
+            };
+            const manifestData = extractManifestData(xml, manifestMetadata, relativePath, 'custom');
+            manifestData.name = finalAgentName; // Use filename for the name field
+            manifestData.path = relativePath;
+            addToManifest(manifestFile, manifestData);
+          }
+
+          // Create IDE slash commands (async function)
+          await createIdeSlashCommands(projectDir, finalAgentName, relativePath, metadata);
+
+          // Update manifest.yaml
+          if (await fs.pathExists(manifestYamlFile)) {
+            updateManifestYaml(manifestYamlFile, finalAgentName, agentType);
+          }
+
+          results.count++;
+          results.agents.push(finalAgentName);
+        } catch (agentError) {
+          console.log(chalk.yellow(`  ⚠️  Failed to reinstall ${agent.name}: ${agentError.message}`));
+        }
+      }
+    } catch (error) {
+      console.log(chalk.yellow(`  ⚠️  Error reinstalling custom agents: ${error.message}`));
+    }
+
+    return results;
+  }
+
+  /**
+   * Copy IDE-specific documentation to XIAOMA docs
+   * @param {Array} ides - List of selected IDEs
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   */
+  async copyIdeDocumentation(ides, xiaomaDir) {
+    const docsDir = path.join(xiaomaDir, 'docs');
+    await fs.ensureDir(docsDir);
+
+    for (const ide of ides) {
+      const sourceDocPath = path.join(getProjectRoot(), 'docs', 'ide-info', `${ide}.md`);
+      const targetDocPath = path.join(docsDir, `${ide}-instructions.md`);
+
+      if (await fs.pathExists(sourceDocPath)) {
+        await this.copyFileWithPlaceholderReplacement(sourceDocPath, targetDocPath, this.xiaomaFolderName || 'xiaoma');
+      }
+    }
+  }
+
+  /**
+   * Scan for legacy/obsolete files in XIAOMA installation
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @returns {Object} Categorized files for cleanup
+   */
+  async scanForLegacyFiles(xiaomaDir) {
+    const legacyFiles = {
+      backup: [],
+      documentation: [],
+      deprecated_task: [],
+      unknown: [],
+    };
+
+    try {
+      // Load files manifest to understand what should exist
+      const manifestPath = path.join(xiaomaDir, 'files-manifest.csv');
+      const manifestFiles = new Set();
+
+      if (await fs.pathExists(manifestPath)) {
+        const manifestContent = await fs.readFile(manifestPath, 'utf8');
+        const lines = manifestContent.split('\n').slice(1); // Skip header
+        for (const line of lines) {
+          if (line.trim()) {
+            const relativePath = line.split(',')[0];
+            if (relativePath) {
+              manifestFiles.add(relativePath);
+            }
+          }
+        }
+      }
+
+      // Scan all files recursively
+      const allFiles = await this.getAllFiles(xiaomaDir);
+
+      for (const filePath of allFiles) {
+        const relativePath = path.relative(xiaomaDir, filePath);
+
+        // Skip expected files
+        if (this.isExpectedFile(relativePath, manifestFiles)) {
+          continue;
+        }
+
+        // Categorize legacy files
+        if (relativePath.endsWith('.bak')) {
+          legacyFiles.backup.push({
+            path: filePath,
+            relativePath: relativePath,
+            size: (await fs.stat(filePath)).size,
+            mtime: (await fs.stat(filePath)).mtime,
+          });
+        } else if (this.isDocumentationFile(relativePath)) {
+          legacyFiles.documentation.push({
+            path: filePath,
+            relativePath: relativePath,
+            size: (await fs.stat(filePath)).size,
+            mtime: (await fs.stat(filePath)).mtime,
+          });
+        } else if (this.isDeprecatedTaskFile(relativePath)) {
+          const suggestedAlternative = this.suggestAlternative(relativePath);
+          legacyFiles.deprecated_task.push({
+            path: filePath,
+            relativePath: relativePath,
+            size: (await fs.stat(filePath)).size,
+            mtime: (await fs.stat(filePath)).mtime,
+            suggestedAlternative,
+          });
+        } else {
+          legacyFiles.unknown.push({
+            path: filePath,
+            relativePath: relativePath,
+            size: (await fs.stat(filePath)).size,
+            mtime: (await fs.stat(filePath)).mtime,
+          });
+        }
+      }
+    } catch (error) {
+      console.warn(`Warning: Could not scan for legacy files: ${error.message}`);
+    }
+
+    return legacyFiles;
+  }
+
+  /**
+   * Get all files in directory recursively
+   * @param {string} dir - Directory to scan
+   * @returns {Array} Array of file paths
+   */
+  async getAllFiles(dir) {
+    const files = [];
+
+    async function scan(currentDir) {
+      const entries = await fs.readdir(currentDir);
+
+      for (const entry of entries) {
+        const fullPath = path.join(currentDir, entry);
+        const stat = await fs.stat(fullPath);
+
+        if (stat.isDirectory()) {
+          // Skip certain directories
+          if (!['node_modules', '.git', 'dist', 'build'].includes(entry)) {
+            await scan(fullPath);
+          }
+        } else {
+          files.push(fullPath);
+        }
+      }
+    }
+
+    await scan(dir);
+    return files;
+  }
+
+  /**
+   * Check if file is expected in installation
+   * @param {string} relativePath - Relative path from XIAOMA dir
+   * @param {Set} manifestFiles - Files from manifest
+   * @returns {boolean} True if expected file
+   */
+  isExpectedFile(relativePath, manifestFiles) {
+    // Core files in manifest
+    if (manifestFiles.has(relativePath)) {
+      return true;
+    }
+
+    // Configuration files
+    if (relativePath.startsWith('_cfg/') || relativePath === 'config.yaml') {
+      return true;
+    }
+
+    // Custom files
+    if (relativePath.startsWith('custom/') || relativePath === 'manifest.yaml') {
+      return true;
+    }
+
+    // Generated files
+    if (relativePath === 'manifest.csv' || relativePath === 'files-manifest.csv') {
+      return true;
+    }
+
+    // IDE-specific files
+    const ides = ['vscode', 'cursor', 'windsurf', 'claude-code', 'github-copilot', 'zsh', 'bash', 'fish'];
+    if (ides.some((ide) => relativePath.includes(ide))) {
+      return true;
+    }
+
+    // XIAOMA MODULE STRUCTURES - recognize valid module content
+    const modulePrefixes = ['xmb/', 'xmc/', 'cis/', 'core/'];
+    const validExtensions = ['.yaml', '.yml', '.json', '.csv', '.md', '.xml', '.svg', '.png', '.jpg', '.gif', '.excalidraw', '.js'];
+
+    // Check if this file is in a recognized module directory
+    for (const modulePrefix of modulePrefixes) {
+      if (relativePath.startsWith(modulePrefix)) {
+        // Check if it has a valid extension
+        const hasValidExtension = validExtensions.some((ext) => relativePath.endsWith(ext));
+        if (hasValidExtension) {
+          return true;
+        }
+      }
+    }
+
+    // Special case for core module resources
+    if (relativePath.startsWith('core/resources/')) {
+      return true;
+    }
+
+    // Special case for docs directory
+    if (relativePath.startsWith('docs/')) {
+      return true;
+    }
+
+    return false;
+  }
+
+  /**
+   * Check if file is documentation
+   * @param {string} relativePath - Relative path
+   * @returns {boolean} True if documentation
+   */
+  isDocumentationFile(relativePath) {
+    const docExtensions = ['.md', '.txt', '.pdf'];
+    const docPatterns = ['docs/', 'README', 'CHANGELOG', 'LICENSE'];
+
+    return docExtensions.some((ext) => relativePath.endsWith(ext)) || docPatterns.some((pattern) => relativePath.includes(pattern));
+  }
+
+  /**
+   * Check if file is deprecated task file
+   * @param {string} relativePath - Relative path
+   * @returns {boolean} True if deprecated
+   */
+  isDeprecatedTaskFile(relativePath) {
+    // Known deprecated files
+    const deprecatedFiles = ['adv-elicit-methods.csv', 'game-resources.json', 'ux-workflow.json'];
+
+    return deprecatedFiles.some((dep) => relativePath.includes(dep));
+  }
+
+  /**
+   * Suggest alternative for deprecated file
+   * @param {string} relativePath - Deprecated file path
+   * @returns {string} Suggested alternative
+   */
+  suggestAlternative(relativePath) {
+    const alternatives = {
+      'adv-elicit-methods.csv': 'Use the new structured workflows in src/modules/',
+      'game-resources.json': 'Resources are now integrated into modules',
+      'ux-workflow.json': 'UX workflows are now in src/modules/xmc/workflows/',
+    };
+
+    for (const [deprecated, alternative] of Object.entries(alternatives)) {
+      if (relativePath.includes(deprecated)) {
+        return alternative;
+      }
+    }
+
+    return 'Check src/modules/ for new alternatives';
+  }
+
+  /**
+   * Perform interactive cleanup of legacy files
+   * @param {string} xiaomaDir - XIAOMA installation directory
+   * @param {boolean} skipInteractive - Skip interactive prompts
+   * @returns {Object} Cleanup results
+   */
+  async performCleanup(xiaomaDir, skipInteractive = false) {
+    const inquirer = require('inquirer');
+    const yaml = require('js-yaml');
+
+    // Load user retention preferences
+    const retentionPath = path.join(xiaomaDir, '_cfg', 'user-retained-files.yaml');
+    let retentionData = { retainedFiles: [], history: [] };
+
+    if (await fs.pathExists(retentionPath)) {
+      const retentionContent = await fs.readFile(retentionPath, 'utf8');
+      retentionData = yaml.load(retentionContent) || retentionData;
+    }
+
+    // Scan for legacy files
+    const legacyFiles = await this.scanForLegacyFiles(xiaomaDir);
+    const allLegacyFiles = [...legacyFiles.backup, ...legacyFiles.documentation, ...legacyFiles.deprecated_task, ...legacyFiles.unknown];
+
+    if (allLegacyFiles.length === 0) {
+      return { deleted: 0, retained: 0, message: 'No legacy files found' };
+    }
+
+    let deletedCount = 0;
+    let retainedCount = 0;
+    const filesToDelete = [];
+
+    if (skipInteractive) {
+      // Auto-delete all non-retained files
+      for (const file of allLegacyFiles) {
+        if (!retentionData.retainedFiles.includes(file.relativePath)) {
+          filesToDelete.push(file);
+        }
+      }
+    } else {
+      // Interactive cleanup
+      console.log(chalk.cyan('\n🧹 Legacy File Cleanup\n'));
+      console.log(chalk.dim('The following obsolete files were found:\n'));
+
+      // Group files by category
+      const categories = [];
+      if (legacyFiles.backup.length > 0) {
+        categories.push({ name: 'Backup Files (.bak)', files: legacyFiles.backup });
+      }
+      if (legacyFiles.documentation.length > 0) {
+        categories.push({ name: 'Documentation', files: legacyFiles.documentation });
+      }
+      if (legacyFiles.deprecated_task.length > 0) {
+        categories.push({ name: 'Deprecated Task Files', files: legacyFiles.deprecated_task });
+      }
+      if (legacyFiles.unknown.length > 0) {
+        categories.push({ name: 'Unknown Files', files: legacyFiles.unknown });
+      }
+
+      for (const category of categories) {
+        console.log(chalk.yellow(`${category.name}:`));
+        for (const file of category.files) {
+          const size = (file.size / 1024).toFixed(1);
+          const date = file.mtime.toLocaleDateString();
+          let line = `  - ${file.relativePath} (${size}KB, ${date})`;
+          if (file.suggestedAlternative) {
+            line += chalk.dim(` → ${file.suggestedAlternative}`);
+          }
+          console.log(chalk.dim(line));
+        }
+        console.log();
+      }
+
+      const prompt = await inquirer.prompt([
+        {
+          type: 'confirm',
+          name: 'proceed',
+          message: 'Would you like to review these files for cleanup?',
+          default: true,
+        },
+      ]);
+
+      if (!prompt.proceed) {
+        return { deleted: 0, retained: allLegacyFiles.length, message: 'Cleanup cancelled by user' };
+      }
+
+      // Show selection interface
+      const selectionPrompt = await inquirer.prompt([
+        {
+          type: 'checkbox',
+          name: 'filesToDelete',
+          message: 'Select files to delete (use SPACEBAR to select, ENTER to continue):',
+          choices: allLegacyFiles.map((file) => {
+            const isRetained = retentionData.retainedFiles.includes(file.relativePath);
+            const description = `${file.relativePath} (${(file.size / 1024).toFixed(1)}KB)`;
+            return {
+              name: description,
+              value: file,
+              checked: !isRetained && !file.relativePath.includes('.bak'),
+            };
+          }),
+          pageSize: Math.min(allLegacyFiles.length, 15),
+        },
+      ]);
+
+      filesToDelete.push(...selectionPrompt.filesToDelete);
+    }
+
+    // Delete selected files
+    for (const file of filesToDelete) {
+      try {
+        await fs.remove(file.path);
+        deletedCount++;
+      } catch (error) {
+        console.warn(`Warning: Could not delete ${file.relativePath}: ${error.message}`);
+      }
+    }
+
+    // Count retained files
+    retainedCount = allLegacyFiles.length - deletedCount;
+
+    // Update retention data
+    const newlyRetained = allLegacyFiles.filter((f) => !filesToDelete.includes(f)).map((f) => f.relativePath);
+
+    retentionData.retainedFiles = [...new Set([...retentionData.retainedFiles, ...newlyRetained])];
+    retentionData.history.push({
+      date: new Date().toISOString(),
+      deleted: deletedCount,
+      retained: retainedCount,
+      files: filesToDelete.map((f) => f.relativePath),
+    });
+
+    // Save retention data
+    await fs.ensureDir(path.dirname(retentionPath));
+    await fs.writeFile(retentionPath, yaml.dump(retentionData), 'utf8');
+
+    return { deleted: deletedCount, retained: retainedCount };
+  }
+}
+
+module.exports = { Installer };